Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95781.t1 | KEH43846.1 | 94.8 | 401 | 15 | 4 | 1 | 399 | 93 | 489 | 9.80E-179 | 636.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95781.t1 | Q9SBV6 | 51.6 | 126 | 47 | 3 | 65 | 187 | 39 | 153 | 1.7e-22 | 108.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95781.t1 | A0A072VQD1 | 94.8 | 401 | 15 | 4 | 1 | 399 | 93 | 489 | 7.1e-179 | 636.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene95781.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95781.t1 | MTR_1g103380 | 97.506 | 401 | 4 | 4 | 1 | 399 | 93 | 489 | 0.0 | 798 |
| MS.gene95781.t1 | MTR_6g017055 | 39.776 | 357 | 114 | 16 | 84 | 401 | 108 | 402 | 4.44e-47 | 167 |
| MS.gene95781.t1 | MTR_7g018500 | 36.438 | 365 | 154 | 12 | 41 | 393 | 57 | 355 | 1.22e-38 | 143 |
| MS.gene95781.t1 | MTR_4g111935 | 40.625 | 160 | 66 | 4 | 96 | 238 | 120 | 267 | 2.92e-20 | 92.4 |
| MS.gene95781.t1 | MTR_4g079580 | 55.738 | 61 | 27 | 0 | 109 | 169 | 21 | 81 | 6.21e-17 | 82.0 |
| MS.gene95781.t1 | MTR_8g463380 | 55.738 | 61 | 27 | 0 | 109 | 169 | 53 | 113 | 1.70e-16 | 81.3 |
| MS.gene95781.t1 | MTR_2g078200 | 57.377 | 61 | 26 | 0 | 109 | 169 | 19 | 79 | 2.13e-16 | 79.7 |
| MS.gene95781.t1 | MTR_2g090960 | 53.333 | 60 | 28 | 0 | 109 | 168 | 23 | 82 | 2.59e-16 | 80.1 |
| MS.gene95781.t1 | MTR_4g109660 | 37.037 | 108 | 67 | 1 | 109 | 216 | 55 | 161 | 2.78e-13 | 70.5 |
| MS.gene95781.t1 | MTR_6g015350 | 51.667 | 60 | 29 | 0 | 109 | 168 | 48 | 107 | 4.03e-13 | 70.5 |
| MS.gene95781.t1 | MTR_7g015010 | 44.444 | 81 | 45 | 0 | 109 | 189 | 56 | 136 | 2.17e-12 | 68.6 |
| MS.gene95781.t1 | MTR_3g026050 | 48.333 | 60 | 31 | 0 | 109 | 168 | 56 | 115 | 2.57e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95781.t1 | AT1G67260 | 42.690 | 171 | 67 | 5 | 110 | 253 | 87 | 253 | 1.12e-26 | 110 |
| MS.gene95781.t1 | AT1G67260 | 42.690 | 171 | 67 | 5 | 110 | 253 | 87 | 253 | 1.12e-26 | 110 |
| MS.gene95781.t1 | AT1G67260 | 42.690 | 171 | 67 | 5 | 110 | 253 | 87 | 253 | 1.30e-26 | 110 |
| MS.gene95781.t1 | AT1G68800 | 68.182 | 66 | 21 | 0 | 110 | 175 | 112 | 177 | 3.98e-21 | 94.7 |
| MS.gene95781.t1 | AT1G68800 | 68.182 | 66 | 21 | 0 | 110 | 175 | 112 | 177 | 4.01e-21 | 94.4 |
| MS.gene95781.t1 | AT3G18550 | 30.043 | 233 | 104 | 8 | 61 | 235 | 66 | 297 | 1.81e-18 | 87.4 |
| MS.gene95781.t1 | AT3G18550 | 31.034 | 232 | 101 | 8 | 61 | 234 | 66 | 296 | 3.23e-18 | 86.7 |
| MS.gene95781.t1 | AT4G18390 | 39.850 | 133 | 68 | 2 | 109 | 236 | 41 | 166 | 3.62e-18 | 85.9 |
| MS.gene95781.t1 | AT4G18390 | 39.850 | 133 | 68 | 2 | 109 | 236 | 41 | 166 | 3.62e-18 | 85.9 |
| MS.gene95781.t1 | AT3G18550 | 29.958 | 237 | 103 | 9 | 61 | 235 | 66 | 301 | 3.73e-18 | 86.7 |
| MS.gene95781.t1 | AT3G18550 | 29.958 | 237 | 103 | 9 | 61 | 235 | 66 | 301 | 3.73e-18 | 86.7 |
| MS.gene95781.t1 | AT1G30210 | 42.188 | 128 | 57 | 3 | 109 | 236 | 49 | 159 | 2.24e-17 | 83.2 |
| MS.gene95781.t1 | AT1G30210 | 42.188 | 128 | 57 | 3 | 109 | 236 | 49 | 159 | 2.24e-17 | 83.2 |
| MS.gene95781.t1 | AT1G53230 | 56.452 | 62 | 27 | 0 | 109 | 170 | 48 | 109 | 5.67e-17 | 82.8 |
| MS.gene95781.t1 | AT1G53230 | 56.452 | 62 | 27 | 0 | 109 | 170 | 48 | 109 | 5.67e-17 | 82.8 |
| MS.gene95781.t1 | AT3G15030 | 57.377 | 61 | 26 | 0 | 109 | 169 | 44 | 104 | 1.04e-16 | 82.0 |
| MS.gene95781.t1 | AT3G15030 | 57.377 | 61 | 26 | 0 | 109 | 169 | 44 | 104 | 1.04e-16 | 82.0 |
| MS.gene95781.t1 | AT3G15030 | 57.377 | 61 | 26 | 0 | 109 | 169 | 44 | 104 | 1.04e-16 | 82.0 |
| MS.gene95781.t1 | AT3G15030 | 57.377 | 61 | 26 | 0 | 109 | 169 | 44 | 104 | 1.04e-16 | 82.0 |
| MS.gene95781.t1 | AT2G31070 | 56.667 | 60 | 26 | 0 | 109 | 168 | 28 | 87 | 2.64e-16 | 80.5 |
| MS.gene95781.t1 | AT3G02150 | 51.667 | 60 | 29 | 0 | 109 | 168 | 73 | 132 | 2.07e-12 | 67.8 |
| MS.gene95781.t1 | AT3G02150 | 51.667 | 60 | 29 | 0 | 109 | 168 | 73 | 132 | 2.89e-12 | 68.2 |
| MS.gene95781.t1 | AT5G60970 | 46.667 | 60 | 32 | 0 | 109 | 168 | 62 | 121 | 2.59e-11 | 65.1 |
Find 74 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCTGTCACAACAAAATT+TGG | 0.083599 | 1.1:-74288129 | None:intergenic |
| GATGAAGAAGGGAAATTATT+AGG | 0.158390 | 1.1:-74287865 | None:intergenic |
| TCCCTTGTTCAACTCCAAAT+TGG | 0.198049 | 1.1:+74288961 | MS.gene95781:CDS |
| CCTTAGGGATAGTAGGAATT+AGG | 0.215420 | 1.1:-74288890 | None:intergenic |
| AGGAATCCATTATGATTAAA+AGG | 0.231280 | 1.1:+74288826 | MS.gene95781:CDS |
| AGAAAAGAAAGGGTACTATT+AGG | 0.235751 | 1.1:-74287904 | None:intergenic |
| TGGAGTTGAACAAGGGAATA+AGG | 0.272402 | 1.1:-74288955 | None:intergenic |
| TTGGAGCTAGTCTCCCAATT+TGG | 0.297661 | 1.1:-74288975 | None:intergenic |
| AAGAAGAGTAGTATTGTTAT+TGG | 0.300314 | 1.1:-74287956 | None:intergenic |
| TTGAAACTTGGTAATTCCTT+AGG | 0.318513 | 1.1:-74288906 | None:intergenic |
| TCATAATCATCATAACCTAT+TGG | 0.320855 | 1.1:+74288761 | MS.gene95781:CDS |
| GGATAGTAGGAATTAGGTTT+TGG | 0.326225 | 1.1:-74288884 | None:intergenic |
| AAACAACCAGCAGCAGTTAT+AGG | 0.340022 | 1.1:+74288153 | MS.gene95781:CDS |
| GAATGCAACAAGAAGAAATT+AGG | 0.347577 | 1.1:+74288583 | MS.gene95781:CDS |
| GAAAAGAAAGGGTACTATTA+GGG | 0.366150 | 1.1:-74287903 | None:intergenic |
| CAAGATAATGGCTACAACTT+TGG | 0.372622 | 1.1:+74288084 | MS.gene95781:CDS |
| AGAAGAGTAGTATTGTTATT+GGG | 0.374456 | 1.1:-74287955 | None:intergenic |
| TTGTAGAGGTTGGAAAATCT+TGG | 0.376948 | 1.1:+74289280 | MS.gene95781:intron |
| ATGAAGAAGGGAAATTATTA+GGG | 0.385216 | 1.1:-74287864 | None:intergenic |
| CCCTTGTTCAACTCCAAATT+GGG | 0.387307 | 1.1:+74288962 | MS.gene95781:CDS |
| GCAATGTTTGAACAAGATAA+TGG | 0.390494 | 1.1:+74288072 | MS.gene95781:CDS |
| TAGGTATTTCACTATCCAAT+AGG | 0.395659 | 1.1:-74288776 | None:intergenic |
| TTTCCTCCTATAACTGCTGC+TGG | 0.420270 | 1.1:-74288159 | None:intergenic |
| AAAAGAAGGGTTACTACTAT+AGG | 0.421997 | 1.1:-74288739 | None:intergenic |
| GGTAATTCCTTAGGGATAGT+AGG | 0.423994 | 1.1:-74288897 | None:intergenic |
| TGTAGAGGTTGGAAAATCTT+GGG | 0.424816 | 1.1:+74289281 | MS.gene95781:intron |
| GTTGAATCTGCACCAGGTCC+AGG | 0.426040 | 1.1:-74288609 | None:intergenic |
| AGCCACTCAAGTGTGTTACT+TGG | 0.429932 | 1.1:-74288300 | None:intergenic |
| CAATCTGCAAAATTAGCATC+AGG | 0.430784 | 1.1:-74288039 | None:intergenic |
| TTATAGGAGGAAAGAAAGAT+AGG | 0.430839 | 1.1:+74288169 | MS.gene95781:CDS |
| TTAATATTGTGGTTGAAACT+TGG | 0.430928 | 1.1:-74288918 | None:intergenic |
| CTAAAGGGAGAAAATTGAAA+TGG | 0.439828 | 1.1:+74288469 | MS.gene95781:CDS |
| ATGGTAGTTGTTCTTCTAAA+GGG | 0.441018 | 1.1:+74288454 | MS.gene95781:CDS |
| GAAGAAGAAGATGATGAAGA+AGG | 0.449349 | 1.1:-74287877 | None:intergenic |
| AATCATTATTATTAATATTG+TGG | 0.455465 | 1.1:-74288929 | None:intergenic |
| TGAAACTTGGTAATTCCTTA+GGG | 0.456765 | 1.1:-74288905 | None:intergenic |
| GATGGTAGTTGTTCTTCTAA+AGG | 0.462971 | 1.1:+74288453 | MS.gene95781:CDS |
| GTCACAACAAAATTTGGAAT+CGG | 0.465229 | 1.1:-74288123 | None:intergenic |
| TCTGGCGGTGGTGGCGGCGA+TGG | 0.465460 | 1.1:+74288435 | MS.gene95781:CDS |
| TTATGATGATTATGAAAAGA+AGG | 0.467263 | 1.1:-74288753 | None:intergenic |
| AAGAAGAAGATGATGAAGAA+GGG | 0.472483 | 1.1:-74287876 | None:intergenic |
| AGTGGCTATTCCACAAAAGT+TGG | 0.483262 | 1.1:-74288994 | None:intergenic |
| TCAGTTTCAGTACTATCAAC+AGG | 0.489731 | 1.1:-74288678 | None:intergenic |
| ATTGTCAATGAGAAAAGAAA+GGG | 0.521480 | 1.1:-74287914 | None:intergenic |
| TATGATGATTATGAAAAGAA+GGG | 0.526879 | 1.1:-74288752 | None:intergenic |
| GATTGTCAATGAGAAAAGAA+AGG | 0.527029 | 1.1:-74287915 | None:intergenic |
| AGTGAAATACCTAGAGATCA+TGG | 0.535750 | 1.1:+74288786 | MS.gene95781:CDS |
| TTAAATCCACCATGATCTCT+AGG | 0.537094 | 1.1:-74288795 | None:intergenic |
| GTATTTGTTGAATCTGCACC+AGG | 0.542255 | 1.1:-74288615 | None:intergenic |
| TGGTGGATTTAATGTGATTG+AGG | 0.542326 | 1.1:+74288806 | MS.gene95781:CDS |
| CCTAATTCCTACTATCCCTA+AGG | 0.544884 | 1.1:+74288890 | MS.gene95781:CDS |
| TCCCAATTTGGAGTTGAACA+AGG | 0.545085 | 1.1:-74288963 | None:intergenic |
| CAAGAGCAAGAGCTAGAGAA+AGG | 0.553192 | 1.1:+74288532 | MS.gene95781:CDS |
| GCAAAATTAGCATCAGGGAA+TGG | 0.555133 | 1.1:-74288033 | None:intergenic |
| CAGTAAGATTCACACATCAC+AGG | 0.558791 | 1.1:+74288194 | MS.gene95781:CDS |
| GAAATTAGGTACCCTGGACC+TGG | 0.562470 | 1.1:+74288597 | MS.gene95781:CDS |
| TTGAATCTGCACCAGGTCCA+GGG | 0.571969 | 1.1:-74288608 | None:intergenic |
| CTACATGCTTCTTGAATCCG+TGG | 0.574833 | 1.1:+74289027 | MS.gene95781:CDS |
| CAAGAAGAAATTAGGTACCC+TGG | 0.600461 | 1.1:+74288591 | MS.gene95781:CDS |
| AAACTGAGGCTTATGCAAGA+TGG | 0.603501 | 1.1:+74288694 | MS.gene95781:CDS |
| TGTTGATAGTACTGAAACTG+AGG | 0.605008 | 1.1:+74288680 | MS.gene95781:CDS |
| AAAATCTTGGGAGGAGCGAA+AGG | 0.610425 | 1.1:+74289293 | MS.gene95781:CDS |
| CCCAATTTGGAGTTGAACAA+GGG | 0.612112 | 1.1:-74288962 | None:intergenic |
| CACAGGGTTTGAGAGACAGA+AGG | 0.612414 | 1.1:+74288211 | MS.gene95781:CDS |
| CAACCAGCAGCAGTTATAGG+AGG | 0.626000 | 1.1:+74288156 | MS.gene95781:CDS |
| AATCTGCAAAATTAGCATCA+GGG | 0.626917 | 1.1:-74288038 | None:intergenic |
| TGTTACAAGATGTGTAGCAG+TGG | 0.627912 | 1.1:+74288558 | MS.gene95781:CDS |
| ACAGGGTTTGAGAGACAGAA+GGG | 0.629239 | 1.1:+74288212 | MS.gene95781:CDS |
| GCATGTAGATAGATTCATAG+TGG | 0.634816 | 1.1:-74289012 | None:intergenic |
| AGTAAGATTCACACATCACA+GGG | 0.651645 | 1.1:+74288195 | MS.gene95781:CDS |
| TGATGTGTTGATGTAGTGAA+AGG | 0.657369 | 1.1:-74288000 | None:intergenic |
| AACCAAGTAACACACTTGAG+TGG | 0.665918 | 1.1:+74288298 | MS.gene95781:CDS |
| AGAGGTTGGAAAATCTTGGG+AGG | 0.691186 | 1.1:+74289284 | MS.gene95781:intron |
| GAAATACCTAGAGATCATGG+TGG | 0.750657 | 1.1:+74288789 | MS.gene95781:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATTATTATTAATATTG+TGG | - | chr1.1:74288932-74288951 | None:intergenic | 10.0% |
| !! | GTAATTAATTAATGTGTTTG+AGG | + | chr1.1:74289249-74289268 | MS.gene95781:intron | 20.0% |
| !! | TATGATGATTATGAAAAGAA+GGG | - | chr1.1:74288755-74288774 | None:intergenic | 20.0% |
| !! | TTATGATGATTATGAAAAGA+AGG | - | chr1.1:74288756-74288775 | None:intergenic | 20.0% |
| !!! | TGCTATTTGAATCAAAAAAT+GGG | - | chr1.1:74288404-74288423 | None:intergenic | 20.0% |
| !!! | TTGCTATTTGAATCAAAAAA+TGG | - | chr1.1:74288405-74288424 | None:intergenic | 20.0% |
| ! | AAGAAGAGTAGTATTGTTAT+TGG | - | chr1.1:74287959-74287978 | None:intergenic | 25.0% |
| ! | ACTTAGTTAATTACTTACCA+CGG | - | chr1.1:74289047-74289066 | None:intergenic | 25.0% |
| ! | AGGAATCCATTATGATTAAA+AGG | + | chr1.1:74288826-74288845 | MS.gene95781:CDS | 25.0% |
| ! | ATGAAGAAGGGAAATTATTA+GGG | - | chr1.1:74287867-74287886 | None:intergenic | 25.0% |
| ! | ATTGTCAATGAGAAAAGAAA+GGG | - | chr1.1:74287917-74287936 | None:intergenic | 25.0% |
| ! | TCATAATCATCATAACCTAT+TGG | + | chr1.1:74288761-74288780 | MS.gene95781:CDS | 25.0% |
| ! | TTAATATTGTGGTTGAAACT+TGG | - | chr1.1:74288921-74288940 | None:intergenic | 25.0% |
| !! | AATAGCAACAAATCATTTTC+TGG | + | chr1.1:74288417-74288436 | MS.gene95781:CDS | 25.0% |
| !! | AGAAGAGTAGTATTGTTATT+GGG | - | chr1.1:74287958-74287977 | None:intergenic | 25.0% |
| !! | CATGTTCCTTTTAATCATAA+TGG | - | chr1.1:74288835-74288854 | None:intergenic | 25.0% |
| !! | TTGGGAAAATCATTATTTTC+AGG | - | chr1.1:74287940-74287959 | None:intergenic | 25.0% |
| !!! | AACACTAATTTGCTAGTTTT+CGG | + | chr1.1:74289325-74289344 | MS.gene95781:CDS | 25.0% |
| AAAAGAAGGGTTACTACTAT+AGG | - | chr1.1:74288742-74288761 | None:intergenic | 30.0% | |
| AAGAAGAAGATGATGAAGAA+GGG | - | chr1.1:74287879-74287898 | None:intergenic | 30.0% | |
| AATCTGCAAAATTAGCATCA+GGG | - | chr1.1:74288041-74288060 | None:intergenic | 30.0% | |
| ATGGTAGTTGTTCTTCTAAA+GGG | + | chr1.1:74288454-74288473 | MS.gene95781:CDS | 30.0% | |
| CTAAAGGGAGAAAATTGAAA+TGG | + | chr1.1:74288469-74288488 | MS.gene95781:CDS | 30.0% | |
| GAATGCAACAAGAAGAAATT+AGG | + | chr1.1:74288583-74288602 | MS.gene95781:CDS | 30.0% | |
| GATGAAGAAGGGAAATTATT+AGG | - | chr1.1:74287868-74287887 | None:intergenic | 30.0% | |
| GATTGTCAATGAGAAAAGAA+AGG | - | chr1.1:74287918-74287937 | None:intergenic | 30.0% | |
| GCAATGTTTGAACAAGATAA+TGG | + | chr1.1:74288072-74288091 | MS.gene95781:CDS | 30.0% | |
| TAGGTATTTCACTATCCAAT+AGG | - | chr1.1:74288779-74288798 | None:intergenic | 30.0% | |
| TTATAGGAGGAAAGAAAGAT+AGG | + | chr1.1:74288169-74288188 | MS.gene95781:CDS | 30.0% | |
| ! | GTCACAACAAAATTTGGAAT+CGG | - | chr1.1:74288126-74288145 | None:intergenic | 30.0% |
| ! | TGAAACTTGGTAATTCCTTA+GGG | - | chr1.1:74288908-74288927 | None:intergenic | 30.0% |
| ! | TTGAAACTTGGTAATTCCTT+AGG | - | chr1.1:74288909-74288928 | None:intergenic | 30.0% |
| !! | AGAAAAGAAAGGGTACTATT+AGG | - | chr1.1:74287907-74287926 | None:intergenic | 30.0% |
| !! | GAAAAGAAAGGGTACTATTA+GGG | - | chr1.1:74287906-74287925 | None:intergenic | 30.0% |
| AGTAAGATTCACACATCACA+GGG | + | chr1.1:74288195-74288214 | MS.gene95781:CDS | 35.0% | |
| AGTGAAATACCTAGAGATCA+TGG | + | chr1.1:74288786-74288805 | MS.gene95781:CDS | 35.0% | |
| CAATCTGCAAAATTAGCATC+AGG | - | chr1.1:74288042-74288061 | None:intergenic | 35.0% | |
| GAAGAAGAAGATGATGAAGA+AGG | - | chr1.1:74287880-74287899 | None:intergenic | 35.0% | |
| GATGGTAGTTGTTCTTCTAA+AGG | + | chr1.1:74288453-74288472 | MS.gene95781:CDS | 35.0% | |
| GCATGTAGATAGATTCATAG+TGG | - | chr1.1:74289015-74289034 | None:intergenic | 35.0% | |
| TCAGTTTCAGTACTATCAAC+AGG | - | chr1.1:74288681-74288700 | None:intergenic | 35.0% | |
| TGCTCTGTCACAACAAAATT+TGG | - | chr1.1:74288132-74288151 | None:intergenic | 35.0% | |
| TGTAGAGGTTGGAAAATCTT+GGG | + | chr1.1:74289281-74289300 | MS.gene95781:intron | 35.0% | |
| TTAAATCCACCATGATCTCT+AGG | - | chr1.1:74288798-74288817 | None:intergenic | 35.0% | |
| TTGTAGAGGTTGGAAAATCT+TGG | + | chr1.1:74289280-74289299 | MS.gene95781:intron | 35.0% | |
| ! | AGCAACAAATCATTTTCTGG+CGG | + | chr1.1:74288420-74288439 | MS.gene95781:CDS | 35.0% |
| ! | CAAGATAATGGCTACAACTT+TGG | + | chr1.1:74288084-74288103 | MS.gene95781:CDS | 35.0% |
| ! | GGATAGTAGGAATTAGGTTT+TGG | - | chr1.1:74288887-74288906 | None:intergenic | 35.0% |
| ! | TGATGTGTTGATGTAGTGAA+AGG | - | chr1.1:74288003-74288022 | None:intergenic | 35.0% |
| !! | TGGTGGATTTAATGTGATTG+AGG | + | chr1.1:74288806-74288825 | MS.gene95781:CDS | 35.0% |
| !! | TGTTGATAGTACTGAAACTG+AGG | + | chr1.1:74288680-74288699 | MS.gene95781:CDS | 35.0% |
| !!! | TTGAGGTGTTGATTTTGTAG+AGG | + | chr1.1:74289266-74289285 | MS.gene95781:intron | 35.0% |
| AAACAACCAGCAGCAGTTAT+AGG | + | chr1.1:74288153-74288172 | MS.gene95781:CDS | 40.0% | |
| AAACTGAGGCTTATGCAAGA+TGG | + | chr1.1:74288694-74288713 | MS.gene95781:CDS | 40.0% | |
| AACCAAGTAACACACTTGAG+TGG | + | chr1.1:74288298-74288317 | MS.gene95781:CDS | 40.0% | |
| AGTGGCTATTCCACAAAAGT+TGG | - | chr1.1:74288997-74289016 | None:intergenic | 40.0% | |
| CAAGAAGAAATTAGGTACCC+TGG | + | chr1.1:74288591-74288610 | MS.gene95781:CDS | 40.0% | |
| CAGTAAGATTCACACATCAC+AGG | + | chr1.1:74288194-74288213 | MS.gene95781:CDS | 40.0% | |
| CCCTTGTTCAACTCCAAATT+GGG | + | chr1.1:74288962-74288981 | MS.gene95781:CDS | 40.0% | |
| CCTAATTCCTACTATCCCTA+AGG | + | chr1.1:74288890-74288909 | MS.gene95781:CDS | 40.0% | |
| CCTTAGGGATAGTAGGAATT+AGG | - | chr1.1:74288893-74288912 | None:intergenic | 40.0% | |
| GAAATACCTAGAGATCATGG+TGG | + | chr1.1:74288789-74288808 | MS.gene95781:CDS | 40.0% | |
| GCAAAATTAGCATCAGGGAA+TGG | - | chr1.1:74288036-74288055 | None:intergenic | 40.0% | |
| GGTAATTCCTTAGGGATAGT+AGG | - | chr1.1:74288900-74288919 | None:intergenic | 40.0% | |
| TCCCTTGTTCAACTCCAAAT+TGG | + | chr1.1:74288961-74288980 | MS.gene95781:CDS | 40.0% | |
| TGGAGTTGAACAAGGGAATA+AGG | - | chr1.1:74288958-74288977 | None:intergenic | 40.0% | |
| TGTTACAAGATGTGTAGCAG+TGG | + | chr1.1:74288558-74288577 | MS.gene95781:CDS | 40.0% | |
| ! | CCCAATTTGGAGTTGAACAA+GGG | - | chr1.1:74288965-74288984 | None:intergenic | 40.0% |
| ! | GTATTTGTTGAATCTGCACC+AGG | - | chr1.1:74288618-74288637 | None:intergenic | 40.0% |
| ! | TCCCAATTTGGAGTTGAACA+AGG | - | chr1.1:74288966-74288985 | None:intergenic | 40.0% |
| !! | AACAAATCATTTTCTGGCGG+TGG | + | chr1.1:74288423-74288442 | MS.gene95781:CDS | 40.0% |
| !!! | GGTGTTGATTTTGTAGAGGT+TGG | + | chr1.1:74289270-74289289 | MS.gene95781:intron | 40.0% |
| AAAATCTTGGGAGGAGCGAA+AGG | + | chr1.1:74289293-74289312 | MS.gene95781:CDS | 45.0% | |
| ACAGGGTTTGAGAGACAGAA+GGG | + | chr1.1:74288212-74288231 | MS.gene95781:CDS | 45.0% | |
| AGAGGTTGGAAAATCTTGGG+AGG | + | chr1.1:74289284-74289303 | MS.gene95781:intron | 45.0% | |
| CAAGAGCAAGAGCTAGAGAA+AGG | + | chr1.1:74288532-74288551 | MS.gene95781:CDS | 45.0% | |
| CTACATGCTTCTTGAATCCG+TGG | + | chr1.1:74289027-74289046 | MS.gene95781:CDS | 45.0% | |
| TTTCCTCCTATAACTGCTGC+TGG | - | chr1.1:74288162-74288181 | None:intergenic | 45.0% | |
| ! | AGCCACTCAAGTGTGTTACT+TGG | - | chr1.1:74288303-74288322 | None:intergenic | 45.0% |
| ! | TTGGAGCTAGTCTCCCAATT+TGG | - | chr1.1:74288978-74288997 | None:intergenic | 45.0% |
| !! | AAATCATTTTCTGGCGGTGG+TGG | + | chr1.1:74288426-74288445 | MS.gene95781:CDS | 45.0% |
| !! | GAGACTAGCTCCAACTTTTG+TGG | + | chr1.1:74288984-74289003 | MS.gene95781:CDS | 45.0% |
| CAACCAGCAGCAGTTATAGG+AGG | + | chr1.1:74288156-74288175 | MS.gene95781:CDS | 50.0% | |
| CACAGGGTTTGAGAGACAGA+AGG | + | chr1.1:74288211-74288230 | MS.gene95781:CDS | 50.0% | |
| GAAATTAGGTACCCTGGACC+TGG | + | chr1.1:74288597-74288616 | MS.gene95781:CDS | 50.0% | |
| TTGAATCTGCACCAGGTCCA+GGG | - | chr1.1:74288611-74288630 | None:intergenic | 50.0% | |
| GTTGAATCTGCACCAGGTCC+AGG | - | chr1.1:74288612-74288631 | None:intergenic | 55.0% | |
| !! | TCATTTTCTGGCGGTGGTGG+CGG | + | chr1.1:74288429-74288448 | MS.gene95781:CDS | 55.0% |
| !! | TCTGGCGGTGGTGGCGGCGA+TGG | + | chr1.1:74288435-74288454 | MS.gene95781:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 74287853 | 74289357 | 74287853 | ID=MS.gene95781 |
| chr1.1 | mRNA | 74287853 | 74289357 | 74287853 | ID=MS.gene95781.t1;Parent=MS.gene95781 |
| chr1.1 | exon | 74287853 | 74289048 | 74287853 | ID=MS.gene95781.t1.exon1;Parent=MS.gene95781.t1 |
| chr1.1 | CDS | 74287853 | 74289048 | 74287853 | ID=cds.MS.gene95781.t1;Parent=MS.gene95781.t1 |
| chr1.1 | exon | 74289288 | 74289357 | 74289288 | ID=MS.gene95781.t1.exon2;Parent=MS.gene95781.t1 |
| chr1.1 | CDS | 74289288 | 74289357 | 74289288 | ID=cds.MS.gene95781.t1;Parent=MS.gene95781.t1 |
| Gene Sequence |
| Protein sequence |