Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95852.t1 | XP_003630992.1 | 97.5 | 241 | 6 | 0 | 1 | 241 | 1 | 241 | 9.10E-137 | 496.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95852.t1 | G7LBI1 | 97.5 | 241 | 6 | 0 | 1 | 241 | 1 | 241 | 6.5e-137 | 496.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene95852.t1 | TF | PLATZ |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95852.t1 | MTR_8g105930 | 97.510 | 241 | 6 | 0 | 1 | 241 | 1 | 241 | 6.63e-179 | 491 |
MS.gene95852.t1 | MTR_1g032880 | 41.837 | 196 | 66 | 2 | 46 | 241 | 16 | 163 | 1.04e-40 | 137 |
MS.gene95852.t1 | MTR_4g116300 | 33.793 | 145 | 74 | 3 | 15 | 158 | 8 | 131 | 6.33e-21 | 88.6 |
MS.gene95852.t1 | MTR_2g055210 | 30.345 | 145 | 78 | 4 | 15 | 158 | 104 | 226 | 1.69e-19 | 86.3 |
MS.gene95852.t1 | MTR_4g094680 | 32.738 | 168 | 95 | 5 | 15 | 181 | 24 | 174 | 3.73e-19 | 83.6 |
MS.gene95852.t1 | MTR_1g062160 | 35.374 | 147 | 71 | 6 | 15 | 158 | 9 | 134 | 6.71e-19 | 82.0 |
MS.gene95852.t1 | MTR_5g030130 | 35.616 | 146 | 71 | 5 | 15 | 158 | 37 | 161 | 2.58e-17 | 78.6 |
MS.gene95852.t1 | MTR_5g030130 | 34.932 | 146 | 72 | 5 | 15 | 158 | 37 | 161 | 6.13e-17 | 76.6 |
MS.gene95852.t1 | MTR_7g102790 | 33.974 | 156 | 77 | 6 | 15 | 165 | 9 | 143 | 7.23e-17 | 76.6 |
MS.gene95852.t1 | MTR_2g036170 | 33.793 | 145 | 68 | 4 | 15 | 158 | 39 | 156 | 8.31e-17 | 77.4 |
MS.gene95852.t1 | MTR_4g078170 | 34.932 | 146 | 72 | 5 | 15 | 158 | 17 | 141 | 8.40e-17 | 76.6 |
MS.gene95852.t1 | MTR_8g066820 | 34.932 | 146 | 72 | 5 | 15 | 158 | 35 | 159 | 4.84e-16 | 75.1 |
MS.gene95852.t1 | MTR_5g007230 | 32.877 | 146 | 75 | 5 | 15 | 158 | 23 | 147 | 1.18e-15 | 73.6 |
MS.gene95852.t1 | MTR_2g084510 | 31.210 | 157 | 91 | 5 | 13 | 165 | 3 | 146 | 8.08e-15 | 72.0 |
MS.gene95852.t1 | MTR_2g084525 | 29.936 | 157 | 93 | 5 | 13 | 165 | 4 | 147 | 3.50e-14 | 70.1 |
MS.gene95852.t1 | MTR_2g060540 | 29.530 | 149 | 88 | 5 | 13 | 157 | 10 | 145 | 2.64e-12 | 63.2 |
MS.gene95852.t1 | MTR_2g060500 | 29.530 | 149 | 88 | 5 | 13 | 157 | 10 | 145 | 3.34e-12 | 62.8 |
MS.gene95852.t1 | MTR_2g084495 | 34.021 | 97 | 60 | 3 | 13 | 105 | 4 | 100 | 2.08e-11 | 62.0 |
MS.gene95852.t1 | MTR_8g097310 | 31.250 | 112 | 54 | 3 | 50 | 158 | 4 | 95 | 2.53e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95852.t1 | AT2G01818 | 43.421 | 152 | 66 | 4 | 15 | 161 | 13 | 149 | 9.06e-36 | 127 |
MS.gene95852.t1 | AT3G60670 | 33.333 | 147 | 76 | 3 | 15 | 160 | 9 | 134 | 4.23e-22 | 91.7 |
MS.gene95852.t1 | AT2G12646 | 33.793 | 145 | 74 | 3 | 15 | 158 | 8 | 131 | 1.06e-20 | 88.2 |
MS.gene95852.t1 | AT2G12646 | 33.793 | 145 | 74 | 3 | 15 | 158 | 8 | 131 | 1.06e-20 | 88.2 |
MS.gene95852.t1 | AT2G12646 | 33.793 | 145 | 74 | 3 | 15 | 158 | 5 | 128 | 1.08e-20 | 88.2 |
MS.gene95852.t1 | AT1G21000 | 36.735 | 147 | 70 | 5 | 15 | 159 | 18 | 143 | 1.71e-18 | 82.0 |
MS.gene95852.t1 | AT1G21000 | 36.735 | 147 | 70 | 5 | 15 | 159 | 15 | 140 | 1.73e-18 | 82.0 |
MS.gene95852.t1 | AT1G43000 | 31.760 | 233 | 122 | 11 | 15 | 237 | 18 | 223 | 5.47e-18 | 80.1 |
MS.gene95852.t1 | AT1G43000 | 31.760 | 233 | 122 | 11 | 15 | 237 | 11 | 216 | 6.63e-18 | 79.7 |
MS.gene95852.t1 | AT1G76590 | 38.060 | 134 | 61 | 4 | 27 | 159 | 33 | 145 | 2.36e-17 | 79.0 |
MS.gene95852.t1 | AT4G17900 | 31.875 | 160 | 87 | 4 | 2 | 159 | 23 | 162 | 4.20e-17 | 77.8 |
MS.gene95852.t1 | AT1G31040 | 30.675 | 163 | 90 | 3 | 15 | 176 | 21 | 161 | 6.74e-17 | 77.8 |
MS.gene95852.t1 | AT4G17900 | 33.333 | 147 | 76 | 4 | 15 | 159 | 22 | 148 | 7.84e-17 | 77.0 |
MS.gene95852.t1 | AT2G27930 | 33.333 | 150 | 85 | 5 | 15 | 161 | 6 | 143 | 5.61e-16 | 73.6 |
MS.gene95852.t1 | AT2G27930 | 33.333 | 150 | 85 | 5 | 15 | 161 | 6 | 143 | 5.61e-16 | 73.6 |
MS.gene95852.t1 | AT2G27930 | 33.333 | 147 | 83 | 5 | 15 | 158 | 6 | 140 | 2.03e-15 | 72.4 |
MS.gene95852.t1 | AT2G27930 | 33.333 | 147 | 83 | 5 | 15 | 158 | 6 | 140 | 2.03e-15 | 72.4 |
MS.gene95852.t1 | AT5G46710 | 31.902 | 163 | 84 | 5 | 1 | 161 | 21 | 158 | 2.35e-15 | 71.6 |
MS.gene95852.t1 | AT2G01818 | 39.175 | 97 | 44 | 2 | 65 | 161 | 4 | 85 | 3.56e-15 | 71.2 |
MS.gene95852.t1 | AT5G46710 | 31.677 | 161 | 83 | 5 | 1 | 159 | 21 | 156 | 8.21e-15 | 71.6 |
MS.gene95852.t1 | AT1G32700 | 31.447 | 159 | 86 | 5 | 2 | 158 | 1 | 138 | 1.20e-14 | 70.9 |
MS.gene95852.t1 | AT5G46710 | 31.447 | 159 | 82 | 5 | 3 | 159 | 7 | 140 | 2.08e-14 | 70.1 |
MS.gene95852.t1 | AT1G32700 | 35.294 | 119 | 55 | 4 | 41 | 158 | 2 | 99 | 7.71e-12 | 62.4 |
Find 44 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTGATAAGTTGCTTTCTT+TGG | 0.204312 | 4.3:+1135500 | None:intergenic |
ATGATTCCGGTTCCGAATTA+AGG | 0.235495 | 4.3:+1135178 | None:intergenic |
CTTTGACTGCTCAAATATTC+AGG | 0.261064 | 4.3:-1136007 | MS.gene95852:intron |
GTCCAAATCATCACTCAAAA+AGG | 0.343718 | 4.3:-1135284 | MS.gene95852:CDS |
AAGCTCATTCTATTCATAGA+AGG | 0.351713 | 4.3:-1136089 | MS.gene95852:CDS |
GATTTACAGATATTCCTATC+AGG | 0.363443 | 4.3:-1136061 | MS.gene95852:CDS |
CAATCTATATTCCTTTCCTT+TGG | 0.367572 | 4.3:+1136231 | None:intergenic |
TGATTTGGACCTTGGCTTTG+AGG | 0.368181 | 4.3:+1135297 | None:intergenic |
TTGAGTGATGATTTGGACCT+TGG | 0.380468 | 4.3:+1135289 | None:intergenic |
TATGACTGATAACCTTAATT+CGG | 0.380930 | 4.3:-1135190 | MS.gene95852:CDS |
GCTTCAGAAATAGATGATTC+CGG | 0.410307 | 4.3:+1135165 | None:intergenic |
CAAAGGAAAGGAATATAGAT+TGG | 0.423544 | 4.3:-1136230 | MS.gene95852:CDS |
CTTACATATCGAATAAAGAT+AGG | 0.448689 | 4.3:-1135593 | MS.gene95852:CDS |
TGATAACCTTAATTCGGAAC+CGG | 0.455008 | 4.3:-1135184 | MS.gene95852:CDS |
CATAGTAAAGTCAATAGCTT+CGG | 0.480348 | 4.3:+1135209 | None:intergenic |
GACTTATAGATCGGAGGCCG+AGG | 0.481284 | 4.3:+1135555 | None:intergenic |
ATGGCGGAAAACATCCTGAT+AGG | 0.486299 | 4.3:+1136047 | None:intergenic |
GCTCTTATGAATAGTAGCTC+TGG | 0.499499 | 4.3:-1136201 | MS.gene95852:CDS |
TTATCAGCTAGATTTAAGTC+AGG | 0.519647 | 4.3:-1135486 | MS.gene95852:CDS |
CCGATCTATAAGTCTAAAGT+TGG | 0.532512 | 4.3:-1135546 | MS.gene95852:CDS |
TGAAGCTGAGCCATGTGGGC+GGG | 0.537407 | 4.3:-1135148 | MS.gene95852:CDS |
AGTGCTTCTGCAGCTCAGAA+TGG | 0.561001 | 4.3:+1136028 | None:intergenic |
CCAACTTTAGACTTATAGAT+CGG | 0.562220 | 4.3:+1135546 | None:intergenic |
GGCAGTACATGTGAAGAATG+TGG | 0.570625 | 4.3:-1135462 | MS.gene95852:CDS |
TAAGAAACGAAAACAAAGAC+AGG | 0.585409 | 4.3:+1135075 | None:intergenic |
GCAGTACATGTGAAGAATGT+GGG | 0.588854 | 4.3:-1135461 | MS.gene95852:CDS |
CTGAAGCTGAGCCATGTGGG+CGG | 0.592373 | 4.3:-1135149 | MS.gene95852:CDS |
TCAGCTAGATTTAAGTCAGG+AGG | 0.597898 | 4.3:-1135483 | MS.gene95852:CDS |
AGGATCAATCACCAAAGGAA+AGG | 0.601046 | 4.3:-1136242 | MS.gene95852:CDS |
CTGGTGCTCAATTATATGCA+AGG | 0.606595 | 4.3:-1135412 | MS.gene95852:intron |
GTTGACTCTTTCAACCAAAG+TGG | 0.608258 | 4.3:-1135255 | MS.gene95852:CDS |
GGATTGTGCATCTCAAACCT+CGG | 0.608993 | 4.3:-1135572 | MS.gene95852:CDS |
TACAAGATGAGCATAGTCGC+TGG | 0.613510 | 4.3:-1135431 | MS.gene95852:CDS |
ATAGGGGAGCCTCAAAGCCA+AGG | 0.624380 | 4.3:-1135306 | MS.gene95852:CDS |
TTTCTGAAGCTGAGCCATGT+GGG | 0.625236 | 4.3:-1135152 | MS.gene95852:CDS |
ACAACTTCAACCCGCCCACA+TGG | 0.636500 | 4.3:+1135138 | None:intergenic |
AAAGACAGGCCTCTGAGGAG+TGG | 0.638363 | 4.3:+1135089 | None:intergenic |
GCTTCTGCAGCTCAGAATGG+CGG | 0.645960 | 4.3:+1136031 | None:intergenic |
TGATGATGCATCTACCACTT+TGG | 0.646189 | 4.3:+1135241 | None:intergenic |
GGGGAAGGATCAATCACCAA+AGG | 0.648113 | 4.3:-1136247 | MS.gene95852:CDS |
ATTGTGCTGTTAGATTCTGT+AGG | 0.654870 | 4.3:-1136122 | MS.gene95852:CDS |
ATTTCTGAAGCTGAGCCATG+TGG | 0.657682 | 4.3:-1135153 | MS.gene95852:CDS |
ACTTTAGACTTATAGATCGG+AGG | 0.659735 | 4.3:+1135549 | None:intergenic |
AAAACAAAGACAGGCCTCTG+AGG | 0.661748 | 4.3:+1135084 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATAAAATATGAATCAAA+TGG | + | chr4.3:1135265-1135284 | None:intergenic | 10.0% |
!!! | TTTATTTTTGTTTTAAATGT+TGG | - | chr4.3:1135277-1135296 | MS.gene95852:CDS | 10.0% |
!! | AATAAACACAATTTATTTCA+TGG | + | chr4.3:1136060-1136079 | None:intergenic | 15.0% |
!! | TTATTCAATGTAATTTCAAT+AGG | + | chr4.3:1135994-1136013 | None:intergenic | 15.0% |
!! | AGTTTATGATCAATAACAAT+TGG | + | chr4.3:1136132-1136151 | None:intergenic | 20.0% |
!!! | ATTGAATAAATTTTCCATGT+GGG | - | chr4.3:1136005-1136024 | MS.gene95852:intron | 20.0% |
!!! | TATTTTGAATATCTGAGATT+AGG | - | chr4.3:1135379-1135398 | MS.gene95852:intron | 20.0% |
!!! | TGTTTTGATTTGTTTTAATC+TGG | - | chr4.3:1135919-1135938 | MS.gene95852:intron | 20.0% |
! | AATTTATAATTCAACCCACA+TGG | + | chr4.3:1136022-1136041 | None:intergenic | 25.0% |
! | CAAAACTTTATAAGAATCCA+TGG | + | chr4.3:1135111-1135130 | None:intergenic | 25.0% |
! | CTTACATATCGAATAAAGAT+AGG | - | chr4.3:1136207-1136226 | MS.gene95852:CDS | 25.0% |
! | TATGACTGATAACCTTAATT+CGG | - | chr4.3:1136610-1136629 | MS.gene95852:intron | 25.0% |
!! | ACAAACATGCTCTTATTTAA+TGG | - | chr4.3:1136413-1136432 | MS.gene95852:intron | 25.0% |
!! | CATTGAATAAATTTTCCATG+TGG | - | chr4.3:1136004-1136023 | MS.gene95852:intron | 25.0% |
!! | CTGATTCTGAATTAAGTTTT+TGG | - | chr4.3:1135477-1135496 | MS.gene95852:CDS | 25.0% |
!!! | TCTGAATTAAGTTTTTGGTT+GGG | - | chr4.3:1135482-1135501 | MS.gene95852:CDS | 25.0% |
!!! | TTCTGAATTAAGTTTTTGGT+TGG | - | chr4.3:1135481-1135500 | MS.gene95852:CDS | 25.0% |
!!! | TTGATTTGTTTTAATCTGGT+TGG | - | chr4.3:1135923-1135942 | MS.gene95852:intron | 25.0% |
!!! | TTTCTTTGGATTTTGATTCA+GGG | + | chr4.3:1136289-1136308 | None:intergenic | 25.0% |
AACAAACAATGACAGTACAA+AGG | + | chr4.3:1136086-1136105 | None:intergenic | 30.0% | |
AACGAAATCAGAATCAGAAT+AGG | + | chr4.3:1135142-1135161 | None:intergenic | 30.0% | |
AAGCTCATTCTATTCATAGA+AGG | - | chr4.3:1135711-1135730 | MS.gene95852:intron | 30.0% | |
CAAAGGAAAGGAATATAGAT+TGG | - | chr4.3:1135570-1135589 | MS.gene95852:CDS | 30.0% | |
CAATCTATATTCCTTTCCTT+TGG | + | chr4.3:1135572-1135591 | None:intergenic | 30.0% | |
CATAGTAAAGTCAATAGCTT+CGG | + | chr4.3:1136594-1136613 | None:intergenic | 30.0% | |
CCAACTTTAGACTTATAGAT+CGG | + | chr4.3:1136257-1136276 | None:intergenic | 30.0% | |
GAAATTTGCATGTGAAGATT+TGG | - | chr4.3:1135341-1135360 | MS.gene95852:intron | 30.0% | |
GATAGACTTTAATGATCTGA+TGG | - | chr4.3:1135947-1135966 | MS.gene95852:intron | 30.0% | |
GATTTACAGATATTCCTATC+AGG | - | chr4.3:1135739-1135758 | MS.gene95852:intron | 30.0% | |
TAAGAAACGAAAACAAAGAC+AGG | + | chr4.3:1136728-1136747 | None:intergenic | 30.0% | |
TAAGAATCCATGGAAAAAAC+AGG | + | chr4.3:1135101-1135120 | None:intergenic | 30.0% | |
TCAATAGGTTCAACCATTAA+TGG | + | chr4.3:1135979-1135998 | None:intergenic | 30.0% | |
TTATCAGCTAGATTTAAGTC+AGG | - | chr4.3:1136314-1136333 | MS.gene95852:intron | 30.0% | |
! | GAATATCTGAGATTAGGTTT+AGG | - | chr4.3:1135385-1135404 | MS.gene95852:intron | 30.0% |
!! | GGTTCTTGAATTGATTTTGT+GGG | - | chr4.3:1135503-1135522 | MS.gene95852:CDS | 30.0% |
!!! | CTTTCTTTGGATTTTGATTC+AGG | + | chr4.3:1136290-1136309 | None:intergenic | 30.0% |
!!! | TCAATTTCCTGTTTTTTCCA+TGG | - | chr4.3:1135091-1135110 | MS.gene95852:CDS | 30.0% |
!!! | TGAATAATGATGGATTTTGC+AGG | - | chr4.3:1135529-1135548 | MS.gene95852:CDS | 30.0% |
ACTTTAGACTTATAGATCGG+AGG | + | chr4.3:1136254-1136273 | None:intergenic | 35.0% | |
CGTACAATTGTTCCATGATT+TGG | - | chr4.3:1136180-1136199 | MS.gene95852:CDS | 35.0% | |
CTTTGACTGCTCAAATATTC+AGG | - | chr4.3:1135793-1135812 | MS.gene95852:intron | 35.0% | |
GCTTCAGAAATAGATGATTC+CGG | + | chr4.3:1136638-1136657 | None:intergenic | 35.0% | |
GTCCAAATCATCACTCAAAA+AGG | - | chr4.3:1136516-1136535 | MS.gene95852:intron | 35.0% | |
TATGTAAGTCTGCCAAATCA+TGG | + | chr4.3:1136195-1136214 | None:intergenic | 35.0% | |
TGATAACCTTAATTCGGAAC+CGG | - | chr4.3:1136616-1136635 | MS.gene95852:intron | 35.0% | |
! | AAGTCAATAGCTTCGGTTTT+CGG | + | chr4.3:1136587-1136606 | None:intergenic | 35.0% |
! | AGCTGATAAGTTGCTTTCTT+TGG | + | chr4.3:1136303-1136322 | None:intergenic | 35.0% |
! | ATCATGTGCTGTTGTTAGAT+AGG | - | chr4.3:1136476-1136495 | MS.gene95852:intron | 35.0% |
! | ATTGTGCTGTTAGATTCTGT+AGG | - | chr4.3:1135678-1135697 | MS.gene95852:intron | 35.0% |
! | CCGATCTATAAGTCTAAAGT+TGG | - | chr4.3:1136254-1136273 | MS.gene95852:intron | 35.0% |
! | CTGATGGACATTACCATTAA+TGG | - | chr4.3:1135963-1135982 | MS.gene95852:intron | 35.0% |
! | TCATGTGCTGTTGTTAGATA+GGG | - | chr4.3:1136477-1136496 | MS.gene95852:intron | 35.0% |
!! | GGGTTCTTGAATTGATTTTG+TGG | - | chr4.3:1135502-1135521 | MS.gene95852:CDS | 35.0% |
!! | TTGTGGGTACTGAATAATGA+TGG | - | chr4.3:1135519-1135538 | MS.gene95852:CDS | 35.0% |
!!! | ATAATGATGGATTTTGCAGG+TGG | - | chr4.3:1135532-1135551 | MS.gene95852:CDS | 35.0% |
!!! | CTCCTTTTTGAGTGATGATT+TGG | + | chr4.3:1136521-1136540 | None:intergenic | 35.0% |
!!! | TAATGATGGATTTTGCAGGT+GGG | - | chr4.3:1135533-1135552 | MS.gene95852:CDS | 35.0% |
AGGATCAATCACCAAAGGAA+AGG | - | chr4.3:1135558-1135577 | MS.gene95852:CDS | 40.0% | |
ATGATTCCGGTTCCGAATTA+AGG | + | chr4.3:1136625-1136644 | None:intergenic | 40.0% | |
CTGGTGCTCAATTATATGCA+AGG | - | chr4.3:1136388-1136407 | MS.gene95852:intron | 40.0% | |
GCAGTACATGTGAAGAATGT+GGG | - | chr4.3:1136339-1136358 | MS.gene95852:intron | 40.0% | |
GCTCTTATGAATAGTAGCTC+TGG | - | chr4.3:1135599-1135618 | MS.gene95852:intron | 40.0% | |
TCAGCTAGATTTAAGTCAGG+AGG | - | chr4.3:1136317-1136336 | MS.gene95852:intron | 40.0% | |
! | CATGTGCTGTTGTTAGATAG+GGG | - | chr4.3:1136478-1136497 | MS.gene95852:intron | 40.0% |
! | GTTGACTCTTTCAACCAAAG+TGG | - | chr4.3:1136545-1136564 | MS.gene95852:intron | 40.0% |
! | TGATGATGCATCTACCACTT+TGG | + | chr4.3:1136562-1136581 | None:intergenic | 40.0% |
! | TTGAGTGATGATTTGGACCT+TGG | + | chr4.3:1136514-1136533 | None:intergenic | 40.0% |
!!! | AATGATGGATTTTGCAGGTG+GGG | - | chr4.3:1135534-1135553 | MS.gene95852:CDS | 40.0% |
AAAACAAAGACAGGCCTCTG+AGG | + | chr4.3:1136719-1136738 | None:intergenic | 45.0% | |
GGATTGTGCATCTCAAACCT+CGG | - | chr4.3:1136228-1136247 | MS.gene95852:CDS | 45.0% | |
GGCAGTACATGTGAAGAATG+TGG | - | chr4.3:1136338-1136357 | MS.gene95852:intron | 45.0% | |
TACAAGATGAGCATAGTCGC+TGG | - | chr4.3:1136369-1136388 | MS.gene95852:intron | 45.0% | |
! | ATGGCGGAAAACATCCTGAT+AGG | + | chr4.3:1135756-1135775 | None:intergenic | 45.0% |
! | TCTGAGGAGTGGTTTTTCTC+GGG | + | chr4.3:1136703-1136722 | None:intergenic | 45.0% |
!! | ATTTCTGAAGCTGAGCCATG+TGG | - | chr4.3:1136647-1136666 | MS.gene95852:intron | 45.0% |
!! | CTCTGAGGAGTGGTTTTTCT+CGG | + | chr4.3:1136704-1136723 | None:intergenic | 45.0% |
!! | TGATTTGGACCTTGGCTTTG+AGG | + | chr4.3:1136506-1136525 | None:intergenic | 45.0% |
!! | TTTCTGAAGCTGAGCCATGT+GGG | - | chr4.3:1136648-1136667 | MS.gene95852:intron | 45.0% |
AGTGCTTCTGCAGCTCAGAA+TGG | + | chr4.3:1135775-1135794 | None:intergenic | 50.0% | |
CGAGAAAAACCACTCCTCAG+AGG | - | chr4.3:1136702-1136721 | MS.gene95852:intron | 50.0% | |
GGGGAAGGATCAATCACCAA+AGG | - | chr4.3:1135553-1135572 | MS.gene95852:CDS | 50.0% | |
! | ATGGATTTTGCAGGTGGGGA+AGG | - | chr4.3:1135538-1135557 | MS.gene95852:CDS | 50.0% |
ACAACTTCAACCCGCCCACA+TGG | + | chr4.3:1136665-1136684 | None:intergenic | 55.0% | |
ATAGGGGAGCCTCAAAGCCA+AGG | - | chr4.3:1136494-1136513 | MS.gene95852:intron | 55.0% | |
GACTTATAGATCGGAGGCCG+AGG | + | chr4.3:1136248-1136267 | None:intergenic | 55.0% | |
GCTTCTGCAGCTCAGAATGG+CGG | + | chr4.3:1135772-1135791 | None:intergenic | 55.0% | |
! | AAAGACAGGCCTCTGAGGAG+TGG | + | chr4.3:1136714-1136733 | None:intergenic | 55.0% |
CTGAAGCTGAGCCATGTGGG+CGG | - | chr4.3:1136651-1136670 | MS.gene95852:intron | 60.0% | |
TGAAGCTGAGCCATGTGGGC+GGG | - | chr4.3:1136652-1136671 | MS.gene95852:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 1135074 | 1136748 | 1135074 | ID=MS.gene95852 |
chr4.3 | mRNA | 1135074 | 1136748 | 1135074 | ID=MS.gene95852.t1;Parent=MS.gene95852 |
chr4.3 | exon | 1136746 | 1136748 | 1136746 | ID=MS.gene95852.t1.exon1;Parent=MS.gene95852.t1 |
chr4.3 | CDS | 1136746 | 1136748 | 1136746 | ID=cds.MS.gene95852.t1;Parent=MS.gene95852.t1 |
chr4.3 | exon | 1136008 | 1136271 | 1136008 | ID=MS.gene95852.t1.exon2;Parent=MS.gene95852.t1 |
chr4.3 | CDS | 1136008 | 1136271 | 1136008 | ID=cds.MS.gene95852.t1;Parent=MS.gene95852.t1 |
chr4.3 | exon | 1135413 | 1135616 | 1135413 | ID=MS.gene95852.t1.exon3;Parent=MS.gene95852.t1 |
chr4.3 | CDS | 1135413 | 1135616 | 1135413 | ID=cds.MS.gene95852.t1;Parent=MS.gene95852.t1 |
chr4.3 | exon | 1135074 | 1135328 | 1135074 | ID=MS.gene95852.t1.exon4;Parent=MS.gene95852.t1 |
chr4.3 | CDS | 1135074 | 1135328 | 1135074 | ID=cds.MS.gene95852.t1;Parent=MS.gene95852.t1 |
Gene Sequence |
Protein sequence |