AlfalfaGEDB | MS.gene95852

M. sativa cultivar XinJiangDaYe / MS.gene95852

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF04640.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95852.t1	XP_003630992.1	97.5	241	6	0	1	241	1	241	9.10E-137	496.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95852.t1	G7LBI1	97.5	241	6	0	1	241	1	241	6.5e-137	496.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene95852.t1	TF	PLATZ

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95852.t1	MTR_8g105930	97.510	241	6	0	1	241	1	241	6.63e-179	491
MS.gene95852.t1	MTR_1g032880	41.837	196	66	2	46	241	16	163	1.04e-40	137
MS.gene95852.t1	MTR_4g116300	33.793	145	74	3	15	158	8	131	6.33e-21	88.6
MS.gene95852.t1	MTR_2g055210	30.345	145	78	4	15	158	104	226	1.69e-19	86.3
MS.gene95852.t1	MTR_4g094680	32.738	168	95	5	15	181	24	174	3.73e-19	83.6
MS.gene95852.t1	MTR_1g062160	35.374	147	71	6	15	158	9	134	6.71e-19	82.0
MS.gene95852.t1	MTR_5g030130	35.616	146	71	5	15	158	37	161	2.58e-17	78.6
MS.gene95852.t1	MTR_5g030130	34.932	146	72	5	15	158	37	161	6.13e-17	76.6
MS.gene95852.t1	MTR_7g102790	33.974	156	77	6	15	165	9	143	7.23e-17	76.6
MS.gene95852.t1	MTR_2g036170	33.793	145	68	4	15	158	39	156	8.31e-17	77.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95852.t1	AT2G01818	43.421	152	66	4	15	161	13	149	9.06e-36	127
MS.gene95852.t1	AT3G60670	33.333	147	76	3	15	160	9	134	4.23e-22	91.7
MS.gene95852.t1	AT2G12646	33.793	145	74	3	15	158	8	131	1.06e-20	88.2
MS.gene95852.t1	AT2G12646	33.793	145	74	3	15	158	8	131	1.06e-20	88.2
MS.gene95852.t1	AT2G12646	33.793	145	74	3	15	158	5	128	1.08e-20	88.2
MS.gene95852.t1	AT1G21000	36.735	147	70	5	15	159	18	143	1.71e-18	82.0
MS.gene95852.t1	AT1G21000	36.735	147	70	5	15	159	15	140	1.73e-18	82.0
MS.gene95852.t1	AT1G43000	31.760	233	122	11	15	237	18	223	5.47e-18	80.1
MS.gene95852.t1	AT1G43000	31.760	233	122	11	15	237	11	216	6.63e-18	79.7
MS.gene95852.t1	AT1G76590	38.060	134	61	4	27	159	33	145	2.36e-17	79.0

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Find 44 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAGACAGGCCTCTG+AGG	0.661748	4.3:+1135084	None:intergenic
AAAGACAGGCCTCTGAGGAG+TGG	0.638363	4.3:+1135089	None:intergenic
AAGCTCATTCTATTCATAGA+AGG	0.351713	4.3:-1136089	MS.gene95852:CDS
ACAACTTCAACCCGCCCACA+TGG	0.636500	4.3:+1135138	None:intergenic
ACTTTAGACTTATAGATCGG+AGG	0.659735	4.3:+1135549	None:intergenic
AGCTGATAAGTTGCTTTCTT+TGG	0.204312	4.3:+1135500	None:intergenic
AGGATCAATCACCAAAGGAA+AGG	0.601046	4.3:-1136242	MS.gene95852:CDS
AGTGCTTCTGCAGCTCAGAA+TGG	0.561001	4.3:+1136028	None:intergenic
ATAGGGGAGCCTCAAAGCCA+AGG	0.624380	4.3:-1135306	MS.gene95852:CDS
ATGATTCCGGTTCCGAATTA+AGG	0.235495	4.3:+1135178	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAACAATGACAGTACAA+AGG	+	chr4.3:1136086-1136105	None:intergenic	30.0%
AACGAAATCAGAATCAGAAT+AGG	+	chr4.3:1135142-1135161	None:intergenic	30.0%
AAGCTCATTCTATTCATAGA+AGG	-	chr4.3:1135711-1135730	MS.gene95852:intron	30.0%
CAAAGGAAAGGAATATAGAT+TGG	-	chr4.3:1135570-1135589	MS.gene95852:CDS	30.0%
CAATCTATATTCCTTTCCTT+TGG	+	chr4.3:1135572-1135591	None:intergenic	30.0%
CATAGTAAAGTCAATAGCTT+CGG	+	chr4.3:1136594-1136613	None:intergenic	30.0%
CCAACTTTAGACTTATAGAT+CGG	+	chr4.3:1136257-1136276	None:intergenic	30.0%
GAAATTTGCATGTGAAGATT+TGG	-	chr4.3:1135341-1135360	MS.gene95852:intron	30.0%
GATAGACTTTAATGATCTGA+TGG	-	chr4.3:1135947-1135966	MS.gene95852:intron	30.0%
GATTTACAGATATTCCTATC+AGG	-	chr4.3:1135739-1135758	MS.gene95852:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	1135074	1136748	1135074	ID=MS.gene95852
chr4.3	mRNA	1135074	1136748	1135074	ID=MS.gene95852.t1;Parent=MS.gene95852
chr4.3	exon	1136746	1136748	1136746	ID=MS.gene95852.t1.exon1;Parent=MS.gene95852.t1
chr4.3	CDS	1136746	1136748	1136746	ID=cds.MS.gene95852.t1;Parent=MS.gene95852.t1
chr4.3	exon	1136008	1136271	1136008	ID=MS.gene95852.t1.exon2;Parent=MS.gene95852.t1
chr4.3	CDS	1136008	1136271	1136008	ID=cds.MS.gene95852.t1;Parent=MS.gene95852.t1
chr4.3	exon	1135413	1135616	1135413	ID=MS.gene95852.t1.exon3;Parent=MS.gene95852.t1
chr4.3	CDS	1135413	1135616	1135413	ID=cds.MS.gene95852.t1;Parent=MS.gene95852.t1
chr4.3	exon	1135074	1135328	1135074	ID=MS.gene95852.t1.exon4;Parent=MS.gene95852.t1
chr4.3	CDS	1135074	1135328	1135074	ID=cds.MS.gene95852.t1;Parent=MS.gene95852.t1

Gene Sequence

>MS.gene95852

ATGGTAAGAACAATTCATCAATTTCCTGTTTTTTCCATGGATTCTTATAAAGTTTTGATTTTTAACCTATTCTGATTCTGATTTCGTTCATTTTGCTTTCAATTCAATGTTCATTCATAACAGCTTTTGCATTTTAGATTCGTTTGATTCTTGATGATTCTGTTTAGTTTGATTTGAACTCATTGTGACCATTTGATTCATATTTTATTTTTGTTTTAAATGTTGGTTGTTTTCAGTTAAGATTAGATGAGTATATTTATCAAATTTGAAATTTGCATGTGAAGATTTGGTTGATTTTTCATTTGTATTTTGAATATCTGAGATTAGGTTTAGGTTTTTGTTGTTAAAGTTTATATTTTTTCATCATTGACTGTTGAAATGTGTTTTTGCTTTTAGATTATTTCTGATTCTGAATTAAGTTTTTGGTTGGGTTCTTGAATTGATTTTGTGGGTACTGAATAATGATGGATTTTGCAGGTGGGGAAGGATCAATCACCAAAGGAAAGGAATATAGATTGGATTAGAGCTCTTATGAATAGTAGCTCTGGCTATTGTGATGATCATCGTGATCTTCGATCTAATGAGAAGAATACTTTCTGTGTAGATTGTGCTGTTAGATTCTGTAGGCACTGTAAAGAAGCTCATTCTATTCATAGAAGGTTTCAGATTTACAGATATTCCTATCAGGATGTTTTCCGCCATTCTGAGCTGCAGAAGCACTTTGACTGCTCAAATATTCAGGTTAATTTGAATGCATTATTACAAGTGATTGATTCATTTTCTATATGATTTATATCAATTCGATTTATTGAGATGAATTTGTTTCATTGTTTGTATATTGTGCTTGTTTTGATTTGTTTTAATCTGGTTGGTGATAGACTTTAATGATCTGATGGACATTACCATTAATGGTTGAACCTATTGAAATTACATTGAATAAATTTTCCATGTGGGTTGAATTATAAATTTTCTAATGTTGTTATCCATGAAATAAATTGTGTTTATTTTTCCTTTGTACTGTCATTGTTTGTTATTGAACATTGTTAAAGTATATACCAATTGTTATTGATCATAAACTCTCACACTCAATTTTGCATAATTTTCATCGTACAATTGTTCCATGATTTGGCAGACTTACATATCGAATAAAGATAGGATTGTGCATCTCAAACCTCGGCCTCCGATCTATAAGTCTAAAGTTGGTGATCAATGCCCTGAATCAAAATCCAAAGAAAGCAACTTATCAGCTAGATTTAAGTCAGGAGGCAGTACATGTGAAGAATGTGGGAAACACTTACAAGATGAGCATAGTCGCTGGTGCTCAATTATATGCAAGGTAACAAACATGCTCTTATTTAATGGTAAAAATTTGCTGTTTTCTATTACATCACTTGTAACTCAAATCATGTGCTGTTGTTAGATAGGGGAGCCTCAAAGCCAAGGTCCAAATCATCACTCAAAAAGGAGTTTAGTTGACTCTTTCAACCAAAGTGGTAGATGCATCATCACTCCGAAAACCGAAGCTATTGACTTTACTATGACTGATAACCTTAATTCGGAACCGGAATCATCTATTTCTGAAGCTGAGCCATGTGGGCGGGTTGAAGTTGTGAATTTCAGAAAGCGCCCGAGAAAAACCACTCCTCAGAGGCCTGTCTTTGTTTTCGTTTCTTAG

Protein sequence

>MS.gene95852.t1

MVGKDQSPKERNIDWIRALMNSSSGYCDDHRDLRSNEKNTFCVDCAVRFCRHCKEAHSIHRRFQIYRYSYQDVFRHSELQKHFDCSNIQTYISNKDRIVHLKPRPPIYKSKVGDQCPESKSKESNLSARFKSGGSTCEECGKHLQDEHSRWCSIICKIGEPQSQGPNHHSKRSLVDSFNQSGRCIITPKTEAIDFTMTDNLNSEPESSISEAEPCGRVEVVNFRKRPRKTTPQRPVFVFVS