AlfalfaGEDB | MS.gene96180

M. sativa cultivar XinJiangDaYe / MS.gene96180

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0097159 GO:0110165 GO:1901363
PFAM: PF03110.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96180.t1	RHN72345.1	95.4	747	34	0	1	747	12	758	0.00E+00	1434.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96180.t1	Q8S9G8	46.8	784	360	16	2	741	24	794	2.2e-182	640.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96180.t1	A0A396J706	95.4	747	34	0	1	747	12	758	0.0e+00	1434.9

TFs/TRs:

Gene ID	Type	Classification
MS.gene96180.t1	TF	SBP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96180.t1	MTR_2g020620	94.645	747	27	1	1	747	12	745	0.0	1407
MS.gene96180.t1	MTR_2g020620	95.942	616	25	0	132	747	26	641	0.0	1202
MS.gene96180.t1	MTR_2g020620	96.436	477	17	0	271	747	1	477	0.0	957
MS.gene96180.t1	MTR_1g086250	27.052	329	197	12	270	581	447	749	6.04e-28	121
MS.gene96180.t1	MTR_1g086250	48.315	89	46	0	77	165	132	220	4.15e-21	99.4
MS.gene96180.t1	MTR_1g086250	27.052	329	197	12	270	581	255	557	7.77e-28	120
MS.gene96180.t1	MTR_8g080690	34.921	189	105	4	77	254	136	317	1.46e-26	112
MS.gene96180.t1	MTR_7g110320	26.176	340	213	10	273	598	449	764	1.53e-25	113
MS.gene96180.t1	MTR_7g110320	46.809	94	48	1	79	170	130	223	6.30e-22	102
MS.gene96180.t1	MTR_7g110320	26.176	340	213	10	273	598	449	764	2.66e-25	112
MS.gene96180.t1	MTR_7g110320	46.809	94	48	1	79	170	130	223	1.03e-21	101
MS.gene96180.t1	MTR_1g035010	29.600	250	161	4	261	502	449	691	3.01e-25	112
MS.gene96180.t1	MTR_1g035010	38.323	167	82	6	29	184	41	197	2.60e-22	103
MS.gene96180.t1	MTR_8g005960	56.250	80	35	0	86	165	181	260	2.79e-24	105
MS.gene96180.t1	MTR_2g078770	41.406	128	68	2	77	204	43	163	6.02e-24	99.8
MS.gene96180.t1	MTR_2g046550	24.688	401	266	9	273	660	465	842	6.23e-24	108
MS.gene96180.t1	MTR_2g046550	48.958	96	47	1	79	172	124	219	8.48e-22	101
MS.gene96180.t1	MTR_2g046550	24.688	401	266	9	273	660	230	607	1.46e-23	107
MS.gene96180.t1	MTR_4g088555	56.410	78	34	0	92	169	63	140	6.87e-23	95.9
MS.gene96180.t1	MTR_7g092930	46.512	86	46	0	80	165	56	141	3.64e-22	99.0
MS.gene96180.t1	MTR_5g046670	50.000	92	45	1	79	169	230	321	3.67e-22	101
MS.gene96180.t1	MTR_3g085180	37.956	137	82	2	77	211	150	285	4.92e-22	100
MS.gene96180.t1	MTR_1g053715	54.667	75	34	0	91	165	73	147	4.93e-22	99.0
MS.gene96180.t1	MTR_8g096780	48.864	88	44	1	79	165	85	172	7.63e-22	99.0
MS.gene96180.t1	MTR_7g444860	54.217	83	38	0	88	170	145	227	8.25e-22	97.4
MS.gene96180.t1	MTR_7g028740	45.977	87	47	0	79	165	64	150	3.27e-21	96.7
MS.gene96180.t1	MTR_4g109770	47.872	94	46	2	79	171	112	203	3.41e-21	97.8
MS.gene96180.t1	MTR_2g461920	47.253	91	47	1	79	168	157	247	3.48e-21	98.6
MS.gene96180.t1	MTR_8g080670	33.908	174	98	4	92	254	162	329	5.35e-20	93.6
MS.gene96180.t1	MTR_8g463140	40.385	104	62	0	92	195	65	168	1.62e-19	87.4
MS.gene96180.t1	MTR_2g014200	43.956	91	51	0	79	169	51	141	2.65e-19	85.5
MS.gene96180.t1	MTR_8g080680	30.918	207	126	5	63	254	95	299	7.36e-19	90.1
MS.gene96180.t1	MTR_3g099080	43.478	92	52	0	74	165	80	171	1.04e-18	89.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96180.t1	AT5G18830	46.429	784	363	15	2	741	24	794	0.0	659
MS.gene96180.t1	AT5G18830	46.429	784	363	15	2	741	24	794	0.0	659
MS.gene96180.t1	AT5G18830	45.855	772	359	12	2	741	24	768	0.0	657
MS.gene96180.t1	AT1G76580	28.629	248	162	4	261	501	482	721	8.00e-25	111
MS.gene96180.t1	AT1G76580	40.952	105	59	1	91	195	113	214	5.05e-21	99.4
MS.gene96180.t1	AT1G53160	49.020	102	47	2	77	173	34	135	9.05e-25	102
MS.gene96180.t1	AT2G33810	47.826	92	48	0	78	169	40	131	3.24e-24	99.0
MS.gene96180.t1	AT1G02065	51.613	93	44	1	84	176	180	271	6.66e-24	103
MS.gene96180.t1	AT1G69170	48.421	95	49	0	74	168	106	200	1.87e-23	103
MS.gene96180.t1	AT2G47070	50.000	96	41	2	71	165	90	179	7.17e-23	105
MS.gene96180.t1	AT2G47070	27.385	325	190	10	273	583	360	652	6.03e-22	102
MS.gene96180.t1	AT1G27370	46.392	97	52	0	69	165	153	249	9.30e-23	100
MS.gene96180.t1	AT1G27360	53.333	75	35	0	91	165	174	248	9.81e-23	101
MS.gene96180.t1	AT1G27360	53.333	75	35	0	91	165	174	248	9.81e-23	101
MS.gene96180.t1	AT1G27360	53.333	75	35	0	91	165	174	248	9.81e-23	101
MS.gene96180.t1	AT1G27360	53.333	75	35	0	91	165	174	248	9.81e-23	101
MS.gene96180.t1	AT1G27370	46.392	97	52	0	69	165	153	249	1.18e-22	101
MS.gene96180.t1	AT1G27370	46.392	97	52	0	69	165	153	249	1.18e-22	101
MS.gene96180.t1	AT1G27370	46.392	97	52	0	69	165	153	249	1.18e-22	101
MS.gene96180.t1	AT1G27370	46.392	97	52	0	69	165	153	249	1.18e-22	101
MS.gene96180.t1	AT1G27370	46.392	97	52	0	69	165	153	249	1.18e-22	101
MS.gene96180.t1	AT1G27370	46.392	97	52	0	69	165	153	249	1.18e-22	101
MS.gene96180.t1	AT3G57920	45.714	105	55	2	70	172	35	139	1.49e-22	100
MS.gene96180.t1	AT1G53160	45.000	120	56	3	77	186	34	153	2.57e-22	95.1
MS.gene96180.t1	AT1G53160	45.000	120	56	3	77	186	34	153	2.57e-22	95.1
MS.gene96180.t1	AT3G60030	54.430	79	36	0	92	170	127	205	6.30e-22	102
MS.gene96180.t1	AT3G60030	25.610	328	200	11	270	583	398	695	9.23e-20	95.1
MS.gene96180.t1	AT2G47070	27.385	325	190	10	273	583	231	523	9.59e-22	101
MS.gene96180.t1	AT2G47070	54.167	48	22	0	118	165	3	50	1.52e-11	68.6
MS.gene96180.t1	AT5G43270	53.247	77	36	0	89	165	166	242	1.89e-21	98.2
MS.gene96180.t1	AT5G43270	53.247	77	36	0	89	165	166	242	1.89e-21	98.2
MS.gene96180.t1	AT5G43270	53.247	77	36	0	89	165	166	242	1.89e-21	98.2
MS.gene96180.t1	AT1G20980	42.017	119	65	1	76	190	104	222	2.29e-21	100
MS.gene96180.t1	AT1G20980	24.779	339	225	8	261	587	485	805	2.56e-21	100
MS.gene96180.t1	AT1G76580	40.952	105	59	1	91	195	113	214	2.84e-21	99.4
MS.gene96180.t1	AT1G76580	30.682	176	114	2	261	429	482	656	5.90e-21	98.6
MS.gene96180.t1	AT1G76580	40.952	105	59	1	91	195	113	214	3.20e-21	99.4
MS.gene96180.t1	AT1G76580	30.682	176	114	2	261	429	482	656	5.04e-21	98.6
MS.gene96180.t1	AT3G15270	53.165	79	37	0	92	170	63	141	3.22e-20	89.4
MS.gene96180.t1	AT5G50670	50.000	74	37	0	92	165	101	174	5.82e-20	92.8
MS.gene96180.t1	AT5G50670	50.000	74	37	0	92	165	101	174	5.82e-20	92.8
MS.gene96180.t1	AT5G50570	50.000	74	37	0	92	165	101	174	5.82e-20	92.8
MS.gene96180.t1	AT5G50570	50.000	74	37	0	92	165	101	174	5.82e-20	92.8
MS.gene96180.t1	AT2G42200	52.000	75	36	0	91	165	73	147	8.86e-19	89.4
MS.gene96180.t1	AT1G02065	48.214	56	29	0	84	139	180	235	1.31e-11	65.9

Find 166 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAATGATTCAACTATCATTT+TGG	0.092702	2.2:-64606103	MS.gene96180:CDS
TCTTCCAGATAGCATCTTTC+TGG	0.114884	2.2:+64609922	None:intergenic
AACTTTATTCCTGTACTTAT+TGG	0.134941	2.2:-64606384	MS.gene96180:CDS
CGCTATCACCATTAATATTC+TGG	0.166748	2.2:+64610872	None:intergenic
ACATTTATCCACATAATATT+TGG	0.170789	2.2:+64610372	None:intergenic
GTTGATATTTCTGAGCTTAA+AGG	0.179143	2.2:-64611758	MS.gene96180:CDS
TTTGTTATGCTTATCAAATT+TGG	0.209664	2.2:+64606069	None:intergenic
ACTTTATTCCTGTACTTATT+GGG	0.226415	2.2:-64606383	MS.gene96180:CDS
GAAGAAGAACCGGTTGTTAA+TGG	0.267583	2.2:-64610913	MS.gene96180:CDS
AAAGGATATTATAATGAATA+TGG	0.277893	2.2:-64605250	MS.gene96180:CDS
CCAGAGACCCAGAATATTAA+TGG	0.284738	2.2:-64610880	MS.gene96180:CDS
CTCTCCTTTCTAAACAATTT+CGG	0.289124	2.2:-64606308	MS.gene96180:CDS
CAACTGATAACTTGGCGTTT+TGG	0.290551	2.2:+64605902	None:intergenic
AGGTTTGAAGCCTTCCATTT+TGG	0.297680	2.2:+64605939	None:intergenic
GGCTGCATCGGCGCGTTGTC+AGG	0.298075	2.2:-64611795	MS.gene96180:CDS
CATGTCAACATCACTTATAT+TGG	0.320229	2.2:+64606035	None:intergenic
TTAACCTCGGGTCACGCTTT+CGG	0.322042	2.2:+64611927	None:intergenic
GCTGCTACTGTTGTTCTTGA+TGG	0.323330	2.2:-64611695	MS.gene96180:CDS
GCTGAAACACAAGCGAATAT+TGG	0.331955	2.2:-64610829	MS.gene96180:CDS
ACGGAGTTGTAGAAGGAAAT+TGG	0.333246	2.2:-64611505	MS.gene96180:CDS
CCGAAGATCTCTCCTCCGTT+TGG	0.333564	2.2:-64612042	MS.gene96180:CDS
TCGGCGCGTTGTCAGGTTCC+TGG	0.339982	2.2:-64611788	MS.gene96180:CDS
TCTAACAAAGCATCGAGTTC+GGG	0.348406	2.2:+64611863	None:intergenic
TAAAAGAAACCCGGCCTGTT+TGG	0.355695	2.2:+64610636	None:intergenic
CTGTAGGTTGAGAATGAGTC+TGG	0.356081	2.2:-64606414	MS.gene96180:intron
TCAAAGATATTGCTATTTGT+TGG	0.367649	2.2:-64606139	MS.gene96180:CDS
TCCTAGTTCTCCATCACAAT+TGG	0.372983	2.2:+64611392	None:intergenic
AACTGCACGCGCGGCTGCAT+CGG	0.375468	2.2:-64611807	MS.gene96180:CDS
TCTGGATCAGGGTTAGAGTT+TGG	0.377437	2.2:+64611965	None:intergenic
ACTCTGCATCTGCTCTAAAC+TGG	0.380253	2.2:+64605331	None:intergenic
TAAGAGTGATTATTCATCTA+TGG	0.380403	2.2:-64610761	MS.gene96180:intron
CGAAGATCTCTCCTCCGTTT+GGG	0.382192	2.2:-64612041	MS.gene96180:CDS
GTTGAACAAACACCTTCTAA+TGG	0.384218	2.2:+64605077	None:intergenic
TTCTAACAAAGCATCGAGTT+CGG	0.397622	2.2:+64611862	None:intergenic
AAACAATTTCGGTCTGCATC+TGG	0.400091	2.2:-64606297	MS.gene96180:CDS
ACTTGGAGCCGCAGCCTTCT+CGG	0.401109	2.2:+64610584	None:intergenic
GTTCGTGCTCGTTTCTTCCC+TGG	0.407134	2.2:+64611827	None:intergenic
ACTTGCTGCGGCCTAAGTTT+CGG	0.410694	2.2:-64609549	MS.gene96180:intron
CCATTAATATTCTGGGTCTC+TGG	0.421873	2.2:+64610880	None:intergenic
CAAACGGAGGAGAGATCTTC+GGG	0.431075	2.2:+64612043	None:intergenic
CTTGCAGTGCCAAACAGGCC+GGG	0.431911	2.2:-64610645	MS.gene96180:intron
CTTCCAGATAGCATCTTTCT+GGG	0.432338	2.2:+64609923	None:intergenic
ACCGGTTCTTCTTCATGATC+CGG	0.435427	2.2:+64610922	None:intergenic
GCTCCCAGAAAGATGCTATC+TGG	0.435998	2.2:-64609926	MS.gene96180:CDS
ATCTTCAACAACTGATAACT+TGG	0.440620	2.2:+64605894	None:intergenic
AAGGGAAACGGAGTTGTAGA+AGG	0.440946	2.2:-64611512	MS.gene96180:CDS
GCTTGCAGTGCCAAACAGGC+CGG	0.446028	2.2:-64610646	MS.gene96180:intron
CAATATGAAGGCGACTTAGA+AGG	0.446383	2.2:+64610790	None:intergenic
TTTAGAGCAGATGCAGAGTT+GGG	0.447298	2.2:-64605327	MS.gene96180:CDS
TTTGGAAGAGGAGGGAGCTG+TGG	0.449145	2.2:+64611983	None:intergenic
CCAAACGGAGGAGAGATCTT+CGG	0.450370	2.2:+64612042	None:intergenic
TTGCAATGCCAAATATTATG+TGG	0.451793	2.2:-64610380	MS.gene96180:CDS
AGATCTTCGGGAGGGTCCAT+TGG	0.455600	2.2:+64612055	None:intergenic
GGGTTAGAGTTTGGAAGAGG+AGG	0.464452	2.2:+64611974	None:intergenic
GCCGGATCATGAAGAAGAAC+CGG	0.466001	2.2:-64610923	MS.gene96180:CDS
GATGCTTTGTTAGAAGATAA+CGG	0.467392	2.2:-64611854	MS.gene96180:CDS
TCAGGGTTAGAGTTTGGAAG+AGG	0.468601	2.2:+64611971	None:intergenic
ATATATCCCTCTAGCTCTAC+AGG	0.469152	2.2:+64610435	None:intergenic
AGTTGGCAGTATCCATTAGA+AGG	0.469741	2.2:-64605089	MS.gene96180:CDS
TGTGATGGAGAACTAGGAAT+AGG	0.470974	2.2:-64611387	MS.gene96180:intron
GTTTAGAGCAGATGCAGAGT+TGG	0.473139	2.2:-64605328	MS.gene96180:CDS
CAGACCGAAATTGTTTAGAA+AGG	0.476881	2.2:+64606304	None:intergenic
GCTATCACCATTAATATTCT+GGG	0.480687	2.2:+64610873	None:intergenic
GAAGTGTGAGTATTGCGTTC+CGG	0.480786	2.2:-64607363	MS.gene96180:CDS
TTAGAAGATAACGGTTTACC+AGG	0.484755	2.2:-64611845	MS.gene96180:CDS
ATGCTAGAGATGCTATTTGT+CGG	0.486858	2.2:-64605987	MS.gene96180:CDS
CCTGGGGCCTGCATTTATTG+AGG	0.489676	2.2:-64607252	MS.gene96180:intron
TCATATTGAGGAAAATCTCC+TGG	0.489818	2.2:-64607270	MS.gene96180:CDS
AATTGGAGCGGCATAATACT+AGG	0.491494	2.2:-64611488	MS.gene96180:CDS
AGGCTATCATCGACGGCATA+GGG	0.494022	2.2:-64611738	MS.gene96180:CDS
GTTGACGAACCATTAACAAC+CGG	0.496044	2.2:+64610904	None:intergenic
AAGGCTATCATCGACGGCAT+AGG	0.500460	2.2:-64611739	MS.gene96180:CDS
ATCACTTGTTGTTTGTCTTG+TGG	0.502076	2.2:-64605148	MS.gene96180:CDS
CTTTATTCCTGTACTTATTG+GGG	0.502295	2.2:-64606382	MS.gene96180:CDS
CATCCCACATGCTTTGAAGC+AGG	0.502812	2.2:-64609604	MS.gene96180:CDS
TTTGCAGATATTCCAATGGT+TGG	0.503021	2.2:-64610466	MS.gene96180:intron
TCTTTATCCCCAATAAGTAC+AGG	0.504320	2.2:+64606375	None:intergenic
CAGGCATACTTGCCAACCAT+TGG	0.506762	2.2:+64610454	None:intergenic
TGTGTATCCATCTTTCATCA+TGG	0.512510	2.2:-64605123	MS.gene96180:CDS
TTGTCTTCAGCCGAGTTATG+TGG	0.514776	2.2:+64607338	None:intergenic
TCATGGGAGGGTTAACGAGT+TGG	0.515866	2.2:-64605106	MS.gene96180:CDS
AACCCTCCCATGATGAAAGA+TGG	0.518354	2.2:+64605116	None:intergenic
TACACATGCCCTTCAGCAGT+TGG	0.521989	2.2:+64606010	None:intergenic
TATCCATCTTTCATCATGGG+AGG	0.523127	2.2:-64605119	MS.gene96180:CDS
TCCAATTGTGATGGAGAACT+AGG	0.524696	2.2:-64611393	MS.gene96180:CDS
AGTTGTTGAAGATAACAGTC+AGG	0.525980	2.2:-64605884	MS.gene96180:intron
CGGAATTTCCGAGAAGGCTG+CGG	0.528004	2.2:-64610592	MS.gene96180:CDS
CGGATTTCGATGAAGGGAAA+CGG	0.538156	2.2:-64611524	MS.gene96180:CDS
CTAGAGGGATATATCCGCCC+TGG	0.540836	2.2:-64610426	MS.gene96180:CDS
TAATACTAGGAGGAGGAGAA+AGG	0.540952	2.2:-64611475	MS.gene96180:CDS
ATGATCTTCCGTGTAATGAA+AGG	0.541427	2.2:-64609872	MS.gene96180:intron
AGATCACGCACATAATACAT+AGG	0.541842	2.2:+64609953	None:intergenic
GACGGCATAGGGTTTGTTTG+CGG	0.543698	2.2:-64611727	MS.gene96180:CDS
AGCCTTCTCGGAAATTCCGC+AGG	0.545096	2.2:+64610596	None:intergenic
ATAACTACCTCAATAAATGC+AGG	0.551106	2.2:+64607245	None:intergenic
GTGACCGTCAAAATCTTACC+AGG	0.551898	2.2:-64605209	MS.gene96180:CDS
GTGTATCCATCTTTCATCAT+GGG	0.553001	2.2:-64605122	MS.gene96180:CDS
CATATTGAGGAAAATCTCCT+GGG	0.554987	2.2:-64607269	MS.gene96180:CDS
CTCTTATTGTCACAATATGA+AGG	0.557692	2.2:+64610778	None:intergenic
CCTCAATAAATGCAGGCCCC+AGG	0.559939	2.2:+64607252	None:intergenic
AAAAGTCGAGGCAAACATGC+AGG	0.562694	2.2:-64609647	MS.gene96180:CDS
TGAAGGCGACTTAGAAGGAT+CGG	0.563449	2.2:+64610795	None:intergenic
CAATATAAGTGATGTTGACA+TGG	0.564749	2.2:-64606034	MS.gene96180:CDS
GATATGTGTCCCTCATATTG+AGG	0.564934	2.2:-64607282	MS.gene96180:CDS
AGAAAGATGCTATCTGGAAG+AGG	0.569804	2.2:-64609920	MS.gene96180:CDS
ACGAGCACGAACTGCACGCG+CGG	0.570422	2.2:-64611816	MS.gene96180:CDS
AGCTTAAAGGCTATCATCGA+CGG	0.570632	2.2:-64611745	MS.gene96180:CDS
AATGATGATTCCAATTGTGA+TGG	0.570689	2.2:-64611402	MS.gene96180:CDS
AAGGCTGTAGATTCTGCAGT+AGG	0.571229	2.2:-64611456	MS.gene96180:CDS
GCTATTTGTCGGAAAGGTGG+AGG	0.572191	2.2:-64605976	MS.gene96180:CDS
TTTCCTGCTTCAAAGCATGT+GGG	0.574026	2.2:+64609601	None:intergenic
TACTTGACCCGCGAGAAAGT+TGG	0.574402	2.2:+64611898	None:intergenic
AGAGATGCTATTTGTCGGAA+AGG	0.576533	2.2:-64605982	MS.gene96180:CDS
TCAGCCGAGTTATGTGGAGC+CGG	0.576623	2.2:+64607344	None:intergenic
AAAATTACATACCGAAACTT+AGG	0.578450	2.2:+64609538	None:intergenic
ACTTGCTCCAACTTTCTCGC+GGG	0.581441	2.2:-64611905	MS.gene96180:CDS
GAATATCGTCGTCGAAGTCG+AGG	0.582065	2.2:+64612005	None:intergenic
TGTTTCAGCAGAAGCAACAA+AGG	0.585054	2.2:+64610843	None:intergenic
GAGGTAAGAGAGGTCCCAAA+CGG	0.585354	2.2:+64612027	None:intergenic
TCGAGTTCGGGGCATGCACA+TGG	0.586136	2.2:+64611875	None:intergenic
AGTTGGAGCAAGTTAACCTC+GGG	0.590174	2.2:+64611915	None:intergenic
ACTTGCTTGTAGATATAGCA+TGG	0.593375	2.2:-64606218	MS.gene96180:CDS
AACTTGCTCCAACTTTCTCG+CGG	0.593749	2.2:-64611906	MS.gene96180:CDS
GGTTAGAGTTTGGAAGAGGA+GGG	0.593911	2.2:+64611975	None:intergenic
ATCCATCTTTCATCATGGGA+GGG	0.600817	2.2:-64605118	MS.gene96180:CDS
GATGCTATTTGTCGGAAAGG+TGG	0.601141	2.2:-64605979	MS.gene96180:CDS
AAGTATGCCTGTAGAGCTAG+AGG	0.601194	2.2:-64610442	MS.gene96180:CDS
CGTAAAGCTTAAAAGAAACC+CGG	0.601561	2.2:+64610627	None:intergenic
GATCACGCACATAATACATA+GGG	0.602014	2.2:+64609954	None:intergenic
CGAAGTCGAGGAGGTAAGAG+AGG	0.603612	2.2:+64612017	None:intergenic
TGACATGGACCAACTGCTGA+AGG	0.605178	2.2:-64606019	MS.gene96180:CDS
AGAGATACTGTCAACAGTGT+GGG	0.614903	2.2:-64611664	MS.gene96180:CDS
TCGAGATCTCAAGAATCCCC+TGG	0.617392	2.2:+64605191	None:intergenic
CTTTGAAGCAGGAAAACCCA+TGG	0.618843	2.2:-64609593	MS.gene96180:CDS
ATCATTCAGATGAATTAGAG+TGG	0.618975	2.2:+64609895	None:intergenic
CGGAGGAGAGATCTTCGGGA+GGG	0.624318	2.2:+64612047	None:intergenic
TAGAGGGATATATCCGCCCT+GGG	0.627129	2.2:-64610425	MS.gene96180:CDS
AGCGGCATAATACTAGGAGG+AGG	0.628758	2.2:-64611482	MS.gene96180:CDS
ATCGTCAGGATCGTACACCC+AGG	0.629008	2.2:+64610408	None:intergenic
AGGCAAACATGCAGGCACCT+AGG	0.631524	2.2:-64609639	MS.gene96180:CDS
CTGATCCAGACGAAAACGAT+AGG	0.631786	2.2:-64611952	MS.gene96180:CDS
CGTTCCGGCTCCACATAACT+CGG	0.633833	2.2:-64607348	MS.gene96180:CDS
GTAAGAGAGGTCCCAAACGG+AGG	0.636882	2.2:+64612030	None:intergenic
AAGTTGGAGCAAGTTAACCT+CGG	0.643009	2.2:+64611914	None:intergenic
GGATGAATATAGTGAAGCCT+AGG	0.643635	2.2:+64609622	None:intergenic
ATCCTGCGGAATTTCCGAGA+AGG	0.655388	2.2:-64610598	MS.gene96180:CDS
TCGTCAGGATCGTACACCCA+GGG	0.658661	2.2:+64610409	None:intergenic
GCTTTACGACTGGAATCCTG+CGG	0.658919	2.2:-64610612	MS.gene96180:CDS
CTTGTGGAAGTAACTTGCTG+CGG	0.661577	2.2:-64609561	MS.gene96180:CDS
CTAACAAAGCATCGAGTTCG+GGG	0.661782	2.2:+64611864	None:intergenic
GGATCCGAAAGCGTGACCCG+AGG	0.668770	2.2:-64611931	MS.gene96180:CDS
GAAATATCAACTTCACAACC+AGG	0.671070	2.2:+64611770	None:intergenic
AATTTCTGTGACAAAAGTCG+AGG	0.673573	2.2:-64609659	MS.gene96180:CDS
GAAACAAACCTTTCATTACA+CGG	0.677907	2.2:+64609864	None:intergenic
TATCGTCGTCGAAGTCGAGG+AGG	0.681010	2.2:+64612008	None:intergenic
AAGAGATACTGTCAACAGTG+TGG	0.681163	2.2:-64611665	MS.gene96180:CDS
GACATGGACCAACTGCTGAA+GGG	0.681962	2.2:-64606018	MS.gene96180:CDS
GTTGTAGAAGGAAATTGGAG+CGG	0.686927	2.2:-64611500	MS.gene96180:CDS
ACGGAGGAGAGATCTTCGGG+AGG	0.691526	2.2:+64612046	None:intergenic
TGACCGTCAAAATCTTACCA+GGG	0.692658	2.2:-64605208	MS.gene96180:CDS
TAGAAGATAACGGTTTACCA+GGG	0.694372	2.2:-64611844	MS.gene96180:CDS
GACCGTCAAAATCTTACCAG+GGG	0.695671	2.2:-64605207	MS.gene96180:CDS
TGGAGCGGCATAATACTAGG+AGG	0.705490	2.2:-64611485	MS.gene96180:CDS
AGTATGCCTGTAGAGCTAGA+GGG	0.705762	2.2:-64610441	MS.gene96180:CDS
ATATTGAGGAAAATCTCCTG+GGG	0.711856	2.2:-64607268	MS.gene96180:CDS
TCAGGATCGTACACCCAGGG+CGG	0.738843	2.2:+64610412	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	64605071	64612074	64605071	ID=MS.gene96180
chr2.2	mRNA	64605071	64612074	64605071	ID=MS.gene96180.t1;Parent=MS.gene96180
chr2.2	exon	64611662	64612074	64611662	ID=MS.gene96180.t1.exon1;Parent=MS.gene96180.t1
chr2.2	CDS	64611662	64612074	64611662	ID=cds.MS.gene96180.t1;Parent=MS.gene96180.t1
chr2.2	exon	64611388	64611560	64611388	ID=MS.gene96180.t1.exon2;Parent=MS.gene96180.t1
chr2.2	CDS	64611388	64611560	64611388	ID=cds.MS.gene96180.t1;Parent=MS.gene96180.t1
chr2.2	exon	64610762	64610988	64610762	ID=MS.gene96180.t1.exon3;Parent=MS.gene96180.t1
chr2.2	CDS	64610762	64610988	64610762	ID=cds.MS.gene96180.t1;Parent=MS.gene96180.t1
chr2.2	exon	64610586	64610660	64610586	ID=MS.gene96180.t1.exon4;Parent=MS.gene96180.t1
chr2.2	CDS	64610586	64610660	64610586	ID=cds.MS.gene96180.t1;Parent=MS.gene96180.t1
chr2.2	exon	64610374	64610481	64610374	ID=MS.gene96180.t1.exon5;Parent=MS.gene96180.t1
chr2.2	CDS	64610374	64610481	64610374	ID=cds.MS.gene96180.t1;Parent=MS.gene96180.t1
chr2.2	exon	64609873	64609987	64609873	ID=MS.gene96180.t1.exon6;Parent=MS.gene96180.t1
chr2.2	CDS	64609873	64609987	64609873	ID=cds.MS.gene96180.t1;Parent=MS.gene96180.t1
chr2.2	exon	64609550	64609685	64609550	ID=MS.gene96180.t1.exon7;Parent=MS.gene96180.t1
chr2.2	CDS	64609550	64609685	64609550	ID=cds.MS.gene96180.t1;Parent=MS.gene96180.t1
chr2.2	exon	64607253	64607415	64607253	ID=MS.gene96180.t1.exon8;Parent=MS.gene96180.t1
chr2.2	CDS	64607253	64607415	64607253	ID=cds.MS.gene96180.t1;Parent=MS.gene96180.t1
chr2.2	exon	64605885	64606430	64605885	ID=MS.gene96180.t1.exon9;Parent=MS.gene96180.t1
chr2.2	CDS	64605885	64606430	64605885	ID=cds.MS.gene96180.t1;Parent=MS.gene96180.t1
chr2.2	exon	64605071	64605358	64605071	ID=MS.gene96180.t1.exon10;Parent=MS.gene96180.t1
chr2.2	CDS	64605071	64605358	64605071	ID=cds.MS.gene96180.t1;Parent=MS.gene96180.t1

Gene Sequence

>MS.gene96180

ATGGACCCTCCCGAAGATCTCTCCTCCGTTTGGGACCTCTCTTACCTCCTCGACTTCGACGACGATATTCCACAGCTCCCTCCTCTTCCAAACTCTAACCCTGATCCAGACGAAAACGATAGGATCCGAAAGCGTGACCCGAGGTTAACTTGCTCCAACTTTCTCGCGGGTCAAGTACCATGTGCATGCCCCGAACTCGATGCTTTGTTAGAAGATAACGGTTTACCAGGGAAGAAACGAGCACGAACTGCACGCGCGGCTGCATCGGCGCGTTGTCAGGTTCCTGGTTGTGAAGTTGATATTTCTGAGCTTAAAGGCTATCATCGACGGCATAGGGTTTGTTTGCGGTGTGCTAATGCTGCTACTGTTGTTCTTGATGGTGATGTGAAGAGATACTGTCAACAGTGTGGGAAGTAAGATTGATGTTGATTGTTATGAATTTTGTGATTGAAGTTGATTATTGTGAATTTTATGATGATGATGATGTTGATTGGGGAATTTGTTGATTATGTAGATTTCATGTTTTATCGGATTTCGATGAAGGGAAACGGAGTTGTAGAAGGAAATTGGAGCGGCATAATACTAGGAGGAGGAGAAAGGCTGTAGATTCTGCAGTAGGAGTTGATAATGAAGTTCAAACTGTTACTCAAAATGATGATTCCAATTGTGATGGAGAACTAGGAATAGGTTGGTTTATTATATTCAGTGTTTAGTATCACACTCTTATTTATTGGTATAAACACTTGTGAGTTGTGACACTGTTTCAGAGAAGTTATGAAAACTGCGTATAAAATGATGTTCATAGGTTGTTTTCAGCTTATTTCCGTCGGCGCATTAGGATAACTTATGAAAACAACTAATAGGTTATACAGAAGCCGTTTGACTTTATTTGTCTTGTGTTAGAAATAGCTTATTCATAAGCGCTTATTATATAAGCTGCAAAATAAACTGTTTGTGCAAACAGGGCCTATCACTCTGTCAACTGACAAGTCAATGGTTGAATAATTGTTTTTCTTCTTCTTCAATATGATAGTATATTCTAATTTAATTTCCATGTGGCTTTATGGATGTGTATGGATCTTGCAGATTATTCGAATTTGAGTAGTGAGAATATCGAAAAAAGAGTGTTGCCGGATCATGAAGAAGAACCGGTTGTTAATGGTTCGTCAACACCAGAGACCCAGAATATTAATGGTGATAGCGTCGTTTCCTTTGTTGCTTCTGCTGAAACACAAGCGAATATTGGAAAAGATGTTTCCGATCCTTCTAAGTCGCCTTCATATTGTGACAATAAGAGTGATTATTCATCTATGGTGGGTTGCTCTGCTTGTTTATTTATTGCTTTTATTTCATGTGTTTATTTTTGGTGCGAGAAATTGCTGTTGGTGTATGCTGATTGAAATTTTGCTTGCAGTGCCAAACAGGCCGGGTTTCTTTTAAGCTTTACGACTGGAATCCTGCGGAATTTCCGAGAAGGCTGCGGCTCCAAGTATTTTAAAGCATTTTATTACAGTTTAGTATTTTGATTGTGGCAAGATTTTCTGCCATCTACATGTTAGTGACTGATTAACAAGCAGTCAAATGTTTTTGCAGATATTCCAATGGTTGGCAAGTATGCCTGTAGAGCTAGAGGGATATATCCGCCCTGGGTGTACGATCCTGACGATTTTTATTGCAATGCCAAATATTATGTGGATAAATGTAAGTGTTCAACTTGATGTTCTTTATATTATAGTTCTTGTACCATATCTTAAGTGCCTGTTAGGTAAAAATAATGCTTTCTTATTACACGGGTTAAGTTCCCTGTATTAGACTTTATGGTTTTTTGTTATGCTCATTCTCATGGTTGCTAGTTTTGCTACATTGAGATCATGTTTGTTTGTTCTCTAATTAGTTGTGCGCTACTACCTGCAACATTTCTCCACTCCCTCTCTCTGTAATGAATCAGGAATTTCATTAATTAACTAATAAAAAGAATTAAAACCCTGTTTTCAAGTATTTAGTTTTTACTGAATCTGATTGGTCCATATTTTTTCTTCCTCTTTCTGATTTTTGACTTCATTTTGTCTCTCTTATGGATCGACCAGTTACTCAAAGACCCTATGTATTATGTGCGTGATCTTGTTGCTCCCAGAAAGATGCTATCTGGAAGAGGAACCACTCTAATTCATCTGAATGATATGATCTTCCGTGTAATGAAAGGTTTGTTTCCGTTTCATTTGTATACTTATTTTTGGTTCACTCTTCTCCTAAATTATTTGAGTTGTTTTTCTGGAAGAGCATTTTAGAACCTGATTCAGGTTCCTTTTGTTATTTTTAGTTATAGGCTTCAAGTTCCGAGGAAAGCTTTCAATTGTTTAAATTAACTAGTATATTTCATTGATTACAGATGGAATTTCTGTGACAAAAGTCGAGGCAAACATGCAGGCACCTAGGCTTCACTATATTCATCCCACATGCTTTGAAGCAGGAAAACCCATGGAATTTTTCGCTTGTGGAAGTAACTTGCTGCGGCCTAAGTTTCGGTATGTAATTTTCACCTCTTCTAAACATCATTTAAAGCATGTTTTTGCATGTTCATTTGCCAGACATAAGCATATTTATTTGCATTATATACATAATATATTTGCCAGTGTTGGGGACCTAATGTAAGGGAAAATACACTTAGGCTTTGTTTGGGAGTTTGGAGGGGAGGGGAGGGGAGGGTTTTGAAAAAAAAAGGAAGGAGCAAGTGGAAGAAATAGAAGACATTGGGAGGAGAGGGTTTTGGAGGTTAATTTTTTACTTATAATAAAAAATCCCCCTCATTTGGGGGAACTCAAAAATTGTATTGGGGGAGGGTTTTGGGGGGTTATGGAGGGTTTATATGAATTTTTCAAATTCAATCTATGTTGTTATAATATTCTTAAAATTAAAAGTATATTAATCATAAGTATTAGTTTATCATTCTCTAAAAAACTGTTTTTTCAAAAAATGTGAATTTTTTGTCCATTTTTCTATATATTTCCAACCCCCCAAAGCCCTCCCCTCCCTTCCCCTCCAAACTCCCAAACAAAGCCTTAGGTTGTAAGGGAAAACACATGCAGGTCACAAGGCAAGTGATAGAAACCAGAACCACACAAAGGCAATTAATAGAGAAAACATAGTAACAAAATACAGTGTTCGTATTATTCTTGAAATGGAAATATTACAGTGGAACAATATCCTTATTGCCCATAGCTGAGCTGCTACTCTGTCCATGTTTAACTATGATTTTCCAAGATACCTTTCTCTTACTACTCAATCCCCCATATATTAGAAGCCCTCTACGCGATTTCCCCTCTCTCACTCCACTGCTACTCAATTTTGTACGCTACTTGTCTCCACCTTAAATATAAAAACAAAAGGAATGGAGGGAGTAGCAGATAATGCTGTATTATTAGTTTTTTAAAAACAATGATTATCTATGTTCCTAAATATGAGACCCTTCTGAAAACAATTCTAACTTTCTTGTATTAACTATTATTTCACCATAATAACCGTAGTTAGTTCATTTCTCTCTCATGTGAGGATCGAGGAAAGAGGTTTAGTGATGAGCCACCGATATAAATTAACTATGTTCATAATTCATTACATGCAAAAGTGAGTTAATGACTCAATAAATTTGAGAGTAATTTTGGAAACATAAGACCCATTTTTAACAAATTTAATGCCGCAAACCAAATTAACCAATTTTCTTAATCTGTTTAAATTTATCAAAGGGTCTTATATACAAGGATGTAGTTAGTATATGAATGTAGAACATTCCAATTAATTTATGAAGTGTATTTCACATCTAAGTAACGTATCATTAAGTGTGCCTAAGGTAACATGTCAATAAGTATACCCTTAGGTACTATATATTTTATTGGGGAAAAACACTACATTACTTGAACTAAATACTAGGTACTATGATTGTAAACATCTCCAATTGTCCTATCTGGAGTTAAGCAGAGAAAATTTTATGCTGCAGAAAGTTATAAACTGATTCTGCTCATCACTGCATCATGTTTTGCATATAAAACTTCAAGTAAAAGGCAATTAACAGCATCACAAGAAATTACATAATCAAATCATTCATATACGTAGCTATATATTTTATTTAGGAATTGACCTTCCTTTTAGGTTTGCATTCCCATATCATAATGATAGCACAGTTTAGTGGGTTCTACCTTTTGTTATAATCTTTTTTGGTGTCACTCTGATCTTAGTAAATTTTGGGAAATTTAATTTAATACGATATTTATTATAAAGGCATAAACCACTTGGGTTGGCCTGGTGGTGTTGGCTTGGGTCTTTGGAGTGTGCTCCTTCAAGGTCTCGGGTTAGATTCTCCTCGGTCCCAATTTCAGTGGCCTAGTTTGGCTTATTCAAAAAAATAAATAAATTATATTTATCATATTTGAGTTTTTTGTCTTTTAGTTGACACGTGTTTATGCTCATTTTCAAATGTATCATATTTGTTGAAGCCACTAGAATTGGTCTAGTGGTGAGGGGTTCGGGTAAGTATGCACGAGGTCCTAGGTTCCGACCGACACCATTGTACACCAAAAAAGAAAGTATCATATTTATTCAGCTAGTTTAGATTTTGGTTCACTTGTCAATGTACGTCTGACTGTAATGAGGTGATAATCATGGCAGGCTTCTTGTATCTTTTTATGGAAAGTATCTGAAGTGTGAGTATTGCGTTCCGGCTCCACATAACTCGGCTGAAGACAATATTTCTTGTGCTTTTGATAATCAGTTATATAAGATATGTGTCCCTCATATTGAGGAAAATCTCCTGGGGCCTGCATTTATTGAGGTAGTTATTGACATTTTTTGTTCCTTAAGTATGCATTGACCTCCATTTCTAATTTCCTGTTTGCTATGTTTCATATCACATTGAGAAAGAAAACTTGACGTTGACCAATACTTGTATGTTTTCTTTTAGATTAGTTAACTTCATATGCATCTGTTGCAATTAAATTTTGTCCGTATGACCTGATAATTTAACAGTTCATTCTAAAAAATCATCAAACAAATTGAGGAACACTGAAACTTTAATGGGTGCAGCTGAGTACTATGACCTTAAGTATTTAGTTTAATTTGGATGTGTCATTTTCGTTGGTAATTTCTTTCTATATTTATTTCTTATTTATTTTTCTGATTTCTGATAAATTAATTTCAATGCATCAAAAGATAATCATAATGCAACGTGCCAAATTTAAGCATATCCCCATAGAAAGTCTTCCCGGTATCGAATTTTGCACTGATATCTTATTGGTTCTTTTCATTTAACCTGTTATCTTAAGCAAATGGGATTTATCTAAGGAAGCTCTTTGACTAAGAGCTGTAGTTATCATGGAAACTTTCGAATTTGGGATTTGTATTATAAAATTGTGGTTTGGTGATGTTGTATTGAATTGTACTTGATCTGTAAAAAAAGCAAGAAATTTTTTGATGATTGTAACGTCAAATCAAGAGAAATTGCCTGAACCTTTTATTTGATGTGATTTTGGAGGTAGCTATAACCCTTGATTAAATTGATTAAATTTCATTTATAAACTGTTTTTATCAAAATGGAAATTTTTAGTTACCACTTCATATTTTTCTTTGTTTCATCATACTTCTTTCCTTTCTGTAGGTTGAGAATGAGTCTGGTTTATCAAACTTTATTCCTGTACTTATTGGGGATAAAGAAATTTGCACTGAAATGAAGATATTGCAACAAAAATTAGACGCTTCTCTCCTTTCTAAACAATTTCGGTCTGCATCTGGCAGTTCTATTTGTAGCTCATGTGAAGCTTTTGCACATATTCACACATCATCATCAGACTTGCTTGTAGATATAGCATGGTTACTTAAAGACCCGACTTCAGAAATTTTTGACAGAATGGTATCTGCTTCACAGATTCAAAGATATTGCTATTTGTTGGATTTTCTAATATGCAATGATTCAACTATCATTTTGGGAAAAATATTGCCAAATTTGATAAGCATAACAAAAAGCATGAAATCCAATATAAGTGATGTTGACATGGACCAACTGCTGAAGGGCATGTGTAATGCTAGAGATGCTATTTGTCGGAAAGGTGGAGGTATAGTTTTGAACTCCAAAATGGAAGGCTTCAAACCTGCTCAGTGCAGTTCCCAAAACGCCAAGTTATCAGTTGTTGAAGATAACAGTCAGGTTAGAGCTATTATTAATTCTGTTTTATTCCCATGATAATGTCATTAATTAATTTTTAGCTTTTAGATTAGATACTCCGCGTTTTACTTCATGATATTTTTTTTTACTATACAATCGAAAATAAAACCTAGTGGGCCATGCATTTATGTCAACTATGTATCTGATTTCAAATATTTCAGTACACGTTGTATTTGACTGTACTCATAACTGCCAAACTTGTTACACTACTTCCTATCCTCAATTCGTTATTTTTTTGTTGAAGATTTAAAGCCATTCCTTCCACATATATTTTCAGCTCAAGAGTATGTTTTGAACTATTGACTAAGTTTCTCTCGGAAAAATGGTAAAGTAGAATCACATGAAAACAACAAATTTATTTCATTTAGTAAACTCTGCTTTGGACCATCAACAGTAGCATGTGTTGGAATTTCCATGGAAAAGATGGAGCAAAGTTCATTTTCTGATTCCGCAAATCCTAGTTGGATTGACATGTTTCTTATCTTATACATTGATTTTTGCTTTGCAGGGTATCCAGTTTAGAGCAGATGCAGAGTTGGGAGTTCTGAGAAGTCTCGCTTCCGATGAAAAAAATCAGAAGATACCGCTTTTGAAAAAGGATATTATAATGAATATGGAAGAGCTGCCTAAAAGATGTGACCGTCAAAATCTTACCAGGGGATTCTTGAGATCTCGACCAACTATTTTTGTGCTTGTATCACTTGTTGTTTGTCTTGTGGTATGTGTATCCATCTTTCATCATGGGAGGGTTAACGAGTTGGCAGTATCCATTAGAAGGTGTTTGTTCAACCATTGA

Protein sequence

>MS.gene96180.t1

MDPPEDLSSVWDLSYLLDFDDDIPQLPPLPNSNPDPDENDRIRKRDPRLTCSNFLAGQVPCACPELDALLEDNGLPGKKRARTARAAASARCQVPGCEVDISELKGYHRRHRVCLRCANAATVVLDGDVKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKAVDSAVGVDNEVQTVTQNDDSNCDGELGIDYSNLSSENIEKRVLPDHEEEPVVNGSSTPETQNINGDSVVSFVASAETQANIGKDVSDPSKSPSYCDNKSDYSSMCQTGRVSFKLYDWNPAEFPRRLRLQIFQWLASMPVELEGYIRPGCTILTIFIAMPNIMWINLLKDPMYYVRDLVAPRKMLSGRGTTLIHLNDMIFRVMKDGISVTKVEANMQAPRLHYIHPTCFEAGKPMEFFACGSNLLRPKFRLLVSFYGKYLKCEYCVPAPHNSAEDNISCAFDNQLYKICVPHIEENLLGPAFIEVENESGLSNFIPVLIGDKEICTEMKILQQKLDASLLSKQFRSASGSSICSSCEAFAHIHTSSSDLLVDIAWLLKDPTSEIFDRMVSASQIQRYCYLLDFLICNDSTIILGKILPNLISITKSMKSNISDVDMDQLLKGMCNARDAICRKGGGIVLNSKMEGFKPAQCSSQNAKLSVVEDNSQGIQFRADAELGVLRSLASDEKNQKIPLLKKDIIMNMEELPKRCDRQNLTRGFLRSRPTIFVLVSLVVCLVVCVSIFHHGRVNELAVSIRRCLFNH