AlfalfaGEDB | MS.gene96217

M. sativa cultivar XinJiangDaYe / MS.gene96217

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96217.t1	XP_003593962.1	80.7	171	33	0	1	171	196	366	4.50E-74	287.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96217.t1	G7IPZ5	80.7	171	33	0	1	171	196	366	3.3e-74	287.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene96217.t1	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96217.t1	MTR_2g019810	80.702	171	33	0	1	171	196	366	1.57e-99	291
MS.gene96217.t1	MTR_2g019840	73.373	169	45	0	1	169	208	376	7.02e-86	257
MS.gene96217.t1	MTR_2g436400	52.564	156	72	2	11	164	222	377	8.36e-50	164
MS.gene96217.t1	MTR_2g436460	47.674	172	82	4	1	164	205	376	5.49e-46	154
MS.gene96217.t1	MTR_2g437080	51.923	156	73	2	11	164	215	370	5.54e-46	154
MS.gene96217.t1	MTR_2g437960	47.753	178	86	3	1	171	216	393	9.78e-46	154
MS.gene96217.t1	MTR_2g437960	47.753	178	86	3	1	171	216	393	1.29e-45	155
MS.gene96217.t1	MTR_2g437030	51.282	156	74	2	11	164	301	456	2.17e-45	155
MS.gene96217.t1	MTR_4g119550	48.718	156	78	2	11	164	225	380	4.09e-44	150
MS.gene96217.t1	MTR_2g437090	50.000	156	76	2	11	164	3	158	4.31e-44	144

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96217.t1	AT5G07900	40.385	156	90	2	9	161	244	399	5.15e-34	124
MS.gene96217.t1	AT1G21150	32.500	160	105	2	9	165	195	354	3.63e-23	94.4
MS.gene96217.t1	AT1G21150	32.500	160	105	2	9	165	231	390	4.71e-23	94.4
MS.gene96217.t1	AT1G21150	32.500	160	105	2	9	165	295	454	8.69e-23	94.0
MS.gene96217.t1	AT1G62010	26.768	198	103	6	9	165	207	403	3.02e-15	72.8
MS.gene96217.t1	AT1G61980	27.692	195	97	7	9	161	223	415	7.56e-14	68.6
MS.gene96217.t1	AT1G61980	27.692	195	97	7	9	161	223	415	7.56e-14	68.6
MS.gene96217.t1	AT1G61980	27.692	195	97	7	9	161	223	415	7.56e-14	68.6
MS.gene96217.t1	AT1G61960	30.000	120	80	1	46	161	332	451	3.35e-13	67.0
MS.gene96217.t1	AT1G61990	26.289	194	101	6	9	161	216	408	5.07e-13	66.2

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Find 30 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCAGCATAAGAAGTAT+TGG	0.453268	2.2:+64990794	None:intergenic
AAAGTATCCATGGTGTATGT+TGG	0.510423	2.2:-64990897	MS.gene96217:CDS
AATACTTCTTATGCTGAGTT+TGG	0.261332	2.2:-64990792	MS.gene96217:CDS
AATTTCAACGCAAAAGCCCT+AGG	0.586081	2.2:+64990755	None:intergenic
ACAGATGCCAACATACACCA+TGG	0.670800	2.2:+64990890	None:intergenic
ACTGCCTTCTCAAATACTGC+AGG	0.547454	2.2:+64991073	None:intergenic
AGAGACTTTGAAAGGTGTAG+GGG	0.645255	2.2:+64990697	None:intergenic
AGATCCTCAGAGACTTTGAA+AGG	0.621290	2.2:+64990689	None:intergenic
AGATTAATGCGTATAAGAAA+TGG	0.381339	2.2:-64990955	MS.gene96217:CDS
AGATTAGTCCAAAATCCGTA+TGG	0.549136	2.2:-64990985	MS.gene96217:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATACTTCTTATGCTGAGTT+TGG	-	chr2.2:64990891-64990910	MS.gene96217:CDS	30.0%
ATTAATCTTCCTTTCCCATA+CGG	+	chr2.2:64990716-64990735	None:intergenic	30.0%
TATGCTGAGTTTGGAAAAAA+GGG	-	chr2.2:64990900-64990919	MS.gene96217:CDS	30.0%
TCAATCCAAAGGTTTGATTA+AGG	-	chr2.2:64990954-64990973	MS.gene96217:CDS	30.0%
TTATGCTGAGTTTGGAAAAA+AGG	-	chr2.2:64990899-64990918	MS.gene96217:CDS	30.0%
AGCATCCTTAATCAAACCTT+TGG	+	chr2.2:64990962-64990981	None:intergenic	35.0%
GAGATATGTGAATTGCTATG+AGG	-	chr2.2:64991026-64991045	MS.gene96217:CDS	35.0%
GGAAAAAAGGGTTATTCCTA+GGG	-	chr2.2:64990912-64990931	MS.gene96217:CDS	35.0%
TGGAAAAAAGGGTTATTCCT+AGG	-	chr2.2:64990911-64990930	MS.gene96217:CDS	35.0%
AATTTCAACGCAAAAGCCCT+AGG	+	chr2.2:64990931-64990950	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	64990595	64991110	64990595	ID=MS.gene96217
chr2.2	mRNA	64990595	64991110	64990595	ID=MS.gene96217.t1;Parent=MS.gene96217
chr2.2	exon	64990595	64991110	64990595	ID=MS.gene96217.t1.exon1;Parent=MS.gene96217.t1
chr2.2	CDS	64990595	64991110	64990595	ID=cds.MS.gene96217.t1;Parent=MS.gene96217.t1

Gene Sequence

>MS.gene96217

ATGCTCTCTAAGAAACCTGCAGTATTTGAGAAGGCAGTTTTGGAAGTAAAACAATTAGGATTCAATCCTAACAATACGTTTTTCCTTATCGCACTACATGCTAAGATTAGTCCAAAATCCGTATGGGAAAGGAAGATTAATGCGTATAAGAAATGGGGTTGGTCTGATGAAGTTATTGTCTCAGCATTTTTAAAGTATCCATGGTGTATGTTGGCATCTGTGGAAAAAATTGAAGCAGTGATGCAGTTTTTTGTCAATCACATGGGTTGGGAGTCTAATGTGCTTGCCAAATATCCAATACTTCTTATGCTGAGTTTGGAAAAAAGGGTTATTCCTAGGGCTTTTGCGTTGAAATTTCTTCAATCCAAAGGTTTGATTAAGGATGCTAAGTCCCCTACACCTTTCAAAGTCTCTGAGGATCTGTTTTTGAAGAGATATGTGAATTGCTATGAGGAAGAAGCATCTCAGCTGTTGAAATTGTATGAAGAGAAAAGAGATGCTTCAACTTTCAAATAA

Protein sequence

>MS.gene96217.t1

MLSKKPAVFEKAVLEVKQLGFNPNNTFFLIALHAKISPKSVWERKINAYKKWGWSDEVIVSAFLKYPWCMLASVEKIEAVMQFFVNHMGWESNVLAKYPILLMLSLEKRVIPRAFALKFLQSKGLIKDAKSPTPFKVSEDLFLKRYVNCYEEEASQLLKLYEEKRDASTFK