Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96355.t1 | KEH37974.1 | 93.5 | 248 | 16 | 0 | 1 | 248 | 93 | 340 | 4.30E-134 | 487.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96355.t1 | A0A072V7G2 | 93.5 | 248 | 16 | 0 | 1 | 248 | 93 | 340 | 3.1e-134 | 487.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene96355.t1 | TF | PLATZ |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96355.t1 | MTR_2g055210 | 93.548 | 248 | 16 | 0 | 1 | 248 | 93 | 340 | 7.57e-175 | 484 |
MS.gene96355.t1 | MTR_4g116300 | 41.107 | 253 | 125 | 5 | 10 | 247 | 6 | 249 | 2.76e-57 | 183 |
MS.gene96355.t1 | MTR_4g094680 | 38.710 | 248 | 115 | 4 | 7 | 247 | 19 | 236 | 2.83e-55 | 177 |
MS.gene96355.t1 | MTR_2g036170 | 39.834 | 241 | 116 | 7 | 10 | 247 | 37 | 251 | 1.50e-49 | 163 |
MS.gene96355.t1 | MTR_4g078170 | 33.333 | 240 | 112 | 5 | 10 | 247 | 15 | 208 | 6.27e-38 | 132 |
MS.gene96355.t1 | MTR_5g030130 | 33.745 | 243 | 115 | 5 | 7 | 247 | 32 | 230 | 1.18e-37 | 132 |
MS.gene96355.t1 | MTR_5g007230 | 43.284 | 134 | 74 | 2 | 10 | 141 | 21 | 154 | 1.66e-35 | 126 |
MS.gene96355.t1 | MTR_8g066820 | 43.077 | 130 | 72 | 2 | 7 | 134 | 30 | 159 | 8.63e-34 | 122 |
MS.gene96355.t1 | MTR_1g062160 | 32.099 | 243 | 116 | 8 | 8 | 247 | 5 | 201 | 1.38e-33 | 120 |
MS.gene96355.t1 | MTR_5g030130 | 43.609 | 133 | 73 | 2 | 7 | 137 | 32 | 164 | 1.44e-33 | 120 |
MS.gene96355.t1 | MTR_7g102790 | 42.754 | 138 | 74 | 3 | 8 | 140 | 5 | 142 | 2.44e-33 | 120 |
MS.gene96355.t1 | MTR_2g084495 | 28.063 | 253 | 145 | 9 | 8 | 248 | 3 | 230 | 4.47e-25 | 99.4 |
MS.gene96355.t1 | MTR_2g084525 | 34.483 | 145 | 84 | 4 | 9 | 142 | 4 | 148 | 1.52e-21 | 90.1 |
MS.gene96355.t1 | MTR_2g060500 | 37.226 | 137 | 75 | 4 | 8 | 133 | 9 | 145 | 3.22e-21 | 87.0 |
MS.gene96355.t1 | MTR_2g060540 | 36.496 | 137 | 76 | 4 | 8 | 133 | 9 | 145 | 6.20e-21 | 86.3 |
MS.gene96355.t1 | MTR_8g105930 | 29.655 | 145 | 79 | 3 | 12 | 134 | 15 | 158 | 1.20e-19 | 85.1 |
MS.gene96355.t1 | MTR_2g084510 | 26.848 | 257 | 154 | 10 | 9 | 248 | 3 | 242 | 4.66e-18 | 80.9 |
MS.gene96355.t1 | MTR_5g077740 | 31.884 | 138 | 80 | 6 | 10 | 139 | 23 | 154 | 3.15e-15 | 72.0 |
MS.gene96355.t1 | MTR_1g032880 | 41.860 | 86 | 44 | 3 | 55 | 135 | 27 | 111 | 4.14e-13 | 65.9 |
MS.gene96355.t1 | MTR_8g097310 | 30.345 | 145 | 91 | 5 | 48 | 184 | 4 | 146 | 6.90e-13 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96355.t1 | AT3G60670 | 54.251 | 247 | 97 | 7 | 10 | 248 | 7 | 245 | 5.06e-83 | 248 |
MS.gene96355.t1 | AT2G12646 | 41.569 | 255 | 127 | 5 | 10 | 247 | 3 | 252 | 2.12e-56 | 181 |
MS.gene96355.t1 | AT2G12646 | 41.569 | 255 | 127 | 5 | 10 | 247 | 6 | 255 | 2.47e-56 | 181 |
MS.gene96355.t1 | AT2G12646 | 41.569 | 255 | 127 | 5 | 10 | 247 | 6 | 255 | 2.47e-56 | 181 |
MS.gene96355.t1 | AT1G31040 | 40.329 | 243 | 121 | 4 | 10 | 247 | 19 | 242 | 1.67e-53 | 173 |
MS.gene96355.t1 | AT1G21000 | 34.025 | 241 | 146 | 7 | 10 | 247 | 13 | 243 | 1.96e-35 | 126 |
MS.gene96355.t1 | AT1G21000 | 34.025 | 241 | 146 | 7 | 10 | 247 | 16 | 246 | 2.09e-35 | 126 |
MS.gene96355.t1 | AT1G32700 | 44.697 | 132 | 71 | 2 | 10 | 139 | 12 | 143 | 5.21e-34 | 122 |
MS.gene96355.t1 | AT4G17900 | 31.837 | 245 | 114 | 8 | 7 | 247 | 31 | 226 | 1.64e-33 | 121 |
MS.gene96355.t1 | AT4G17900 | 31.837 | 245 | 114 | 8 | 7 | 247 | 17 | 212 | 1.80e-33 | 120 |
MS.gene96355.t1 | AT1G76590 | 32.917 | 240 | 147 | 7 | 10 | 247 | 18 | 245 | 2.22e-31 | 116 |
MS.gene96355.t1 | AT2G01818 | 31.474 | 251 | 121 | 8 | 10 | 248 | 11 | 222 | 2.54e-31 | 115 |
MS.gene96355.t1 | AT1G43000 | 31.818 | 242 | 131 | 6 | 8 | 247 | 7 | 216 | 4.57e-29 | 109 |
MS.gene96355.t1 | AT1G43000 | 31.818 | 242 | 131 | 6 | 8 | 247 | 14 | 223 | 4.97e-29 | 109 |
MS.gene96355.t1 | AT2G27930 | 40.000 | 140 | 72 | 3 | 10 | 137 | 4 | 143 | 1.38e-28 | 107 |
MS.gene96355.t1 | AT2G27930 | 40.000 | 140 | 72 | 3 | 10 | 137 | 4 | 143 | 1.38e-28 | 107 |
MS.gene96355.t1 | AT2G27930 | 40.876 | 137 | 69 | 3 | 10 | 134 | 4 | 140 | 2.12e-28 | 106 |
MS.gene96355.t1 | AT2G27930 | 40.876 | 137 | 69 | 3 | 10 | 134 | 4 | 140 | 2.12e-28 | 106 |
MS.gene96355.t1 | AT5G46710 | 38.406 | 138 | 82 | 3 | 7 | 141 | 9 | 146 | 3.41e-26 | 101 |
MS.gene96355.t1 | AT5G46710 | 38.406 | 138 | 82 | 3 | 7 | 141 | 25 | 162 | 5.47e-26 | 101 |
MS.gene96355.t1 | AT5G46710 | 39.695 | 131 | 76 | 3 | 7 | 134 | 25 | 155 | 1.10e-25 | 99.4 |
MS.gene96355.t1 | AT1G32700 | 45.192 | 104 | 55 | 2 | 38 | 139 | 1 | 104 | 1.18e-24 | 96.7 |
MS.gene96355.t1 | AT2G27930 | 43.373 | 83 | 37 | 1 | 62 | 134 | 61 | 143 | 1.10e-16 | 76.3 |
MS.gene96355.t1 | AT2G27930 | 43.373 | 83 | 37 | 1 | 62 | 134 | 61 | 143 | 1.10e-16 | 76.3 |
MS.gene96355.t1 | AT2G01818 | 42.308 | 78 | 38 | 2 | 65 | 135 | 6 | 83 | 8.00e-13 | 64.7 |
Find 56 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAACATTTGGTTCACTATC+TGG | 0.237092 | 7.1:+56838476 | MS.gene96355:CDS |
TGCCTCTCACAGATTCTTGC+AGG | 0.296565 | 7.1:+56837401 | MS.gene96355:CDS |
GTAAGGGTCTTGAAGACTTC+TGG | 0.303743 | 7.1:-56837884 | None:intergenic |
GAGGAGCATCTCTTTGGAAT+TGG | 0.338342 | 7.1:-56837838 | None:intergenic |
TTGCTTGAGGAGCATCTCTT+TGG | 0.338603 | 7.1:-56837844 | None:intergenic |
AACCGAACTTCATCCGGTTC+CGG | 0.371774 | 7.1:+56838596 | MS.gene96355:CDS |
AGTCACTTGGTGAAAACATT+TGG | 0.391874 | 7.1:+56838464 | MS.gene96355:CDS |
CACCGGAACCGGATGAAGTT+CGG | 0.397970 | 7.1:-56838598 | None:intergenic |
AGCCAAAGTGGAACAACATT+TGG | 0.404254 | 7.1:-56837252 | None:intergenic |
TCTCGGAGAGTCTGATGAAT+AGG | 0.410323 | 7.1:+56838750 | MS.gene96355:CDS |
GGTTCAAACCGAACTTCATC+CGG | 0.422747 | 7.1:+56838590 | MS.gene96355:CDS |
ATGCCACCATTATCTGATTC+TGG | 0.428827 | 7.1:+56838521 | MS.gene96355:CDS |
GAGAGAGAGCAGAATTTGTA+AGG | 0.431185 | 7.1:-56837901 | None:intergenic |
CACCAAATGTTGTTCCACTT+TGG | 0.432537 | 7.1:+56837250 | MS.gene96355:CDS |
GGGGATATATCCACCGGAAC+CGG | 0.449597 | 7.1:-56838609 | None:intergenic |
CGGTAGTAGCGGTGCAAGCA+AGG | 0.456996 | 7.1:-56838649 | None:intergenic |
GGATGAAGTTCGGTTTGAAC+CGG | 0.475769 | 7.1:-56838588 | None:intergenic |
GCCTGCATGCTCGCCCGTGT+CGG | 0.482367 | 7.1:+56838724 | MS.gene96355:CDS |
TCTAGTCCAGAATCAGATAA+TGG | 0.486066 | 7.1:-56838527 | None:intergenic |
CTCGCCCGTGTCGGAAATCT+CGG | 0.491691 | 7.1:+56838733 | MS.gene96355:CDS |
GATGGTTCGAGAACCGAGTC+AGG | 0.499983 | 7.1:-56838566 | None:intergenic |
TCCGACACGGGCGAGCATGC+AGG | 0.516056 | 7.1:-56838725 | None:intergenic |
GTTGTCCGAAAGAAAAGAAC+CGG | 0.516356 | 7.1:+56838674 | MS.gene96355:CDS |
CAATATAACGGGGCCCTATG+TGG | 0.529393 | 7.1:-56838785 | None:intergenic |
GACTCGGTTCTCGAACCATC+CGG | 0.529624 | 7.1:+56838569 | MS.gene96355:CDS |
GTCTTGAAGACTTCTGGCAC+AGG | 0.531073 | 7.1:-56837878 | None:intergenic |
GAGGAAAGGAACGCCACATA+GGG | 0.533397 | 7.1:+56838772 | MS.gene96355:CDS |
CTACAGTTCTACAGAACAAA+CGG | 0.540640 | 7.1:+56837787 | MS.gene96355:intron |
CGGTCTAATGACACCTGACT+CGG | 0.553504 | 7.1:+56838553 | MS.gene96355:CDS |
AGCATCACTTGAAGCCAAAG+TGG | 0.554106 | 7.1:-56837264 | None:intergenic |
CGAACTTCATCCGGTTCCGG+TGG | 0.558699 | 7.1:+56838599 | MS.gene96355:CDS |
ATCAATGGGGATATATCCAC+CGG | 0.563655 | 7.1:-56838615 | None:intergenic |
ATTCTGCTCTCTCTCTTGCA+AGG | 0.568123 | 7.1:+56837909 | MS.gene96355:CDS |
TGCTTGCACCGCTACTACCG+AGG | 0.570706 | 7.1:+56838652 | MS.gene96355:CDS |
CGGAGAGTCTGATGAATAGG+AGG | 0.571731 | 7.1:+56838753 | MS.gene96355:CDS |
GGAGGAAAGGAACGCCACAT+AGG | 0.574415 | 7.1:+56838771 | MS.gene96355:CDS |
GGTAGTAGCGGTGCAAGCAA+GGG | 0.580460 | 7.1:-56838648 | None:intergenic |
AGTCTGATGAATAGGAGGAA+AGG | 0.580615 | 7.1:+56838758 | MS.gene96355:CDS |
ATGCAGGCCGACACGGTGGT+CGG | 0.595664 | 7.1:-56838709 | None:intergenic |
GAAGTTCGGTTTGAACCGGA+TGG | 0.598179 | 7.1:-56838584 | None:intergenic |
GGTTCTGCAGATATTGCTTG+AGG | 0.599864 | 7.1:-56837857 | None:intergenic |
AGAATCAGATAATGGTGGCA+TGG | 0.607517 | 7.1:-56838519 | None:intergenic |
CTCTCCGAGATTTCCGACAC+GGG | 0.608645 | 7.1:-56838737 | None:intergenic |
GGCGAGCATGCAGGCCGACA+CGG | 0.612985 | 7.1:-56838716 | None:intergenic |
TCTGATTCTGGACTAGATGA+CGG | 0.614207 | 7.1:+56838533 | MS.gene96355:CDS |
AGTAGCGGTGCAAGCAAGGG+CGG | 0.618674 | 7.1:-56838645 | None:intergenic |
TCGGACAACCTCGGTAGTAG+CGG | 0.624276 | 7.1:-56838660 | None:intergenic |
AGAGAGAGCAGAATTTGTAA+GGG | 0.625118 | 7.1:-56837900 | None:intergenic |
AAGAATCTGTGAGAGGCATG+AGG | 0.645559 | 7.1:-56837396 | None:intergenic |
TCACTTTCCGACCACCGTGT+CGG | 0.647068 | 7.1:+56838702 | MS.gene96355:CDS |
AACCTGCAAGAATCTGTGAG+AGG | 0.682015 | 7.1:-56837403 | None:intergenic |
AGTCCAGAATCAGATAATGG+TGG | 0.683117 | 7.1:-56838524 | None:intergenic |
ACTCTCCGAGATTTCCGACA+CGG | 0.701296 | 7.1:-56838738 | None:intergenic |
GAGCATGCAGGCCGACACGG+TGG | 0.741450 | 7.1:-56838713 | None:intergenic |
TGGTCGGAAAGTGATGACAC+CGG | 0.742801 | 7.1:-56838693 | None:intergenic |
GCATGAGGAGAAACACAGTG+AGG | 0.772523 | 7.1:-56837381 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATTAAACTATGTATAT+TGG | + | chr7.1:56837634-56837653 | MS.gene96355:intron | 10.0% |
!! | TGAAAAAAATGTTTATTGTT+TGG | + | chr7.1:56837338-56837357 | MS.gene96355:CDS | 15.0% |
!!! | AAAAAATATGATGATGAAAA+TGG | - | chr7.1:56838249-56838268 | None:intergenic | 15.0% |
!!! | GTTAATTTTTACAAGAATTT+AGG | + | chr7.1:56837693-56837712 | MS.gene96355:intron | 15.0% |
!!! | TTGGAATTTTTAAGTATAAT+TGG | + | chr7.1:56838028-56838047 | MS.gene96355:intron | 15.0% |
!! | ATATTCAATTCGTGTAAAAT+TGG | - | chr7.1:56838143-56838162 | None:intergenic | 20.0% |
!!! | ATGTGTATCATGATATTTTA+AGG | + | chr7.1:56837524-56837543 | MS.gene96355:CDS | 20.0% |
!!! | ATGTTGAATTTAGTTTTAGT+TGG | + | chr7.1:56838191-56838210 | MS.gene96355:intron | 20.0% |
!!! | TAATTGTTTGTCTGATTTTA+TGG | - | chr7.1:56838351-56838370 | None:intergenic | 20.0% |
!!! | TACAATGATTTTATCATGTT+TGG | + | chr7.1:56838009-56838028 | MS.gene96355:intron | 20.0% |
!!! | TATCATGATATTTTAAGGAT+GGG | + | chr7.1:56837529-56837548 | MS.gene96355:CDS | 20.0% |
!!! | TTCAATTTTTAGTGTATGTT+TGG | + | chr7.1:56837968-56837987 | MS.gene96355:intron | 20.0% |
! | AGATTAAATATGAATGTGAG+AGG | - | chr7.1:56837944-56837963 | None:intergenic | 25.0% |
!! | CTATTCAAGTAAGTGATTTT+TGG | + | chr7.1:56837581-56837600 | MS.gene96355:intron | 25.0% |
!! | TACCACAATTAATTTTGTGT+TGG | + | chr7.1:56837750-56837769 | MS.gene96355:intron | 25.0% |
!!! | GTATCATGATATTTTAAGGA+TGG | + | chr7.1:56837528-56837547 | MS.gene96355:CDS | 25.0% |
ACAAGAAAGAGAAAAGAAGA+AGG | - | chr7.1:56837429-56837448 | None:intergenic | 30.0% | |
CACCAACACAAAATTAATTG+TGG | - | chr7.1:56837755-56837774 | None:intergenic | 30.0% | |
! | AAAACATTTGGTTCACTATC+TGG | + | chr7.1:56838476-56838495 | MS.gene96355:CDS | 30.0% |
AGAGAGAGCAGAATTTGTAA+GGG | - | chr7.1:56837903-56837922 | None:intergenic | 35.0% | |
CTACAGTTCTACAGAACAAA+CGG | + | chr7.1:56837787-56837806 | MS.gene96355:intron | 35.0% | |
TCTAGTCCAGAATCAGATAA+TGG | - | chr7.1:56838530-56838549 | None:intergenic | 35.0% | |
! | AGTCACTTGGTGAAAACATT+TGG | + | chr7.1:56838464-56838483 | MS.gene96355:CDS | 35.0% |
! | TTTATGGTTGTGTTTTCCAC+AGG | + | chr7.1:56838439-56838458 | MS.gene96355:intron | 35.0% |
AGCCAAAGTGGAACAACATT+TGG | - | chr7.1:56837255-56837274 | None:intergenic | 40.0% | |
AGTCTGATGAATAGGAGGAA+AGG | + | chr7.1:56838758-56838777 | MS.gene96355:CDS | 40.0% | |
ATCAATGGGGATATATCCAC+CGG | - | chr7.1:56838618-56838637 | None:intergenic | 40.0% | |
ATGCCACCATTATCTGATTC+TGG | + | chr7.1:56838521-56838540 | MS.gene96355:CDS | 40.0% | |
CACCAAATGTTGTTCCACTT+TGG | + | chr7.1:56837250-56837269 | MS.gene96355:CDS | 40.0% | |
GAGAGAGAGCAGAATTTGTA+AGG | - | chr7.1:56837904-56837923 | None:intergenic | 40.0% | |
GTTGTCCGAAAGAAAAGAAC+CGG | + | chr7.1:56838674-56838693 | MS.gene96355:CDS | 40.0% | |
! | AGAATCAGATAATGGTGGCA+TGG | - | chr7.1:56838522-56838541 | None:intergenic | 40.0% |
! | AGTCCAGAATCAGATAATGG+TGG | - | chr7.1:56838527-56838546 | None:intergenic | 40.0% |
! | TCTGATTCTGGACTAGATGA+CGG | + | chr7.1:56838533-56838552 | MS.gene96355:CDS | 40.0% |
! | TCTTTTCTTTCGGACAACCT+CGG | - | chr7.1:56838672-56838691 | None:intergenic | 40.0% |
!!! | TGACACCGGTTCTTTTCTTT+CGG | - | chr7.1:56838682-56838701 | None:intergenic | 40.0% |
AACCTGCAAGAATCTGTGAG+AGG | - | chr7.1:56837406-56837425 | None:intergenic | 45.0% | |
AGCATCACTTGAAGCCAAAG+TGG | - | chr7.1:56837267-56837286 | None:intergenic | 45.0% | |
ATTCTGCTCTCTCTCTTGCA+AGG | + | chr7.1:56837909-56837928 | MS.gene96355:CDS | 45.0% | |
GGTTCAAACCGAACTTCATC+CGG | + | chr7.1:56838590-56838609 | MS.gene96355:CDS | 45.0% | |
GGTTCTGCAGATATTGCTTG+AGG | - | chr7.1:56837860-56837879 | None:intergenic | 45.0% | |
GTAAGGGTCTTGAAGACTTC+TGG | - | chr7.1:56837887-56837906 | None:intergenic | 45.0% | |
TCTCGGAGAGTCTGATGAAT+AGG | + | chr7.1:56838750-56838769 | MS.gene96355:CDS | 45.0% | |
! | AAGAATCTGTGAGAGGCATG+AGG | - | chr7.1:56837399-56837418 | None:intergenic | 45.0% |
! | AAGGGCGGTTTTGCAATCAA+TGG | - | chr7.1:56838633-56838652 | None:intergenic | 45.0% |
! | AGGGCGGTTTTGCAATCAAT+GGG | - | chr7.1:56838632-56838651 | None:intergenic | 45.0% |
! | GGATGAAGTTCGGTTTGAAC+CGG | - | chr7.1:56838591-56838610 | None:intergenic | 45.0% |
! | TTTTCCACAGGTGAGTCACT+TGG | + | chr7.1:56838451-56838470 | MS.gene96355:intron | 45.0% |
!! | GAGGAGCATCTCTTTGGAAT+TGG | - | chr7.1:56837841-56837860 | None:intergenic | 45.0% |
!! | TTGCTTGAGGAGCATCTCTT+TGG | - | chr7.1:56837847-56837866 | None:intergenic | 45.0% |
!!! | TTTTTTTTTTTGTTATTTTA+TGG | + | chr7.1:56838423-56838442 | MS.gene96355:intron | 5.0% |
AACCGAACTTCATCCGGTTC+CGG | + | chr7.1:56838596-56838615 | MS.gene96355:CDS | 50.0% | |
ACTCTCCGAGATTTCCGACA+CGG | - | chr7.1:56838741-56838760 | None:intergenic | 50.0% | |
CGGAGAGTCTGATGAATAGG+AGG | + | chr7.1:56838753-56838772 | MS.gene96355:CDS | 50.0% | |
CGGTCTAATGACACCTGACT+CGG | + | chr7.1:56838553-56838572 | MS.gene96355:CDS | 50.0% | |
GAGGAAAGGAACGCCACATA+GGG | + | chr7.1:56838772-56838791 | MS.gene96355:CDS | 50.0% | |
GCATGAGGAGAAACACAGTG+AGG | - | chr7.1:56837384-56837403 | None:intergenic | 50.0% | |
GTCTTGAAGACTTCTGGCAC+AGG | - | chr7.1:56837881-56837900 | None:intergenic | 50.0% | |
TGCCTCTCACAGATTCTTGC+AGG | + | chr7.1:56837401-56837420 | MS.gene96355:CDS | 50.0% | |
TGGTCGGAAAGTGATGACAC+CGG | - | chr7.1:56838696-56838715 | None:intergenic | 50.0% | |
TTCACCAAGTGACTCACCTG+TGG | - | chr7.1:56838458-56838477 | None:intergenic | 50.0% | |
! | CAATATAACGGGGCCCTATG+TGG | - | chr7.1:56838788-56838807 | None:intergenic | 50.0% |
! | GAAGTTCGGTTTGAACCGGA+TGG | - | chr7.1:56838587-56838606 | None:intergenic | 50.0% |
! | GGGCGGTTTTGCAATCAATG+GGG | - | chr7.1:56838631-56838650 | None:intergenic | 50.0% |
CACCGGAACCGGATGAAGTT+CGG | - | chr7.1:56838601-56838620 | None:intergenic | 55.0% | |
CTCTCCGAGATTTCCGACAC+GGG | - | chr7.1:56838740-56838759 | None:intergenic | 55.0% | |
GATGGTTCGAGAACCGAGTC+AGG | - | chr7.1:56838569-56838588 | None:intergenic | 55.0% | |
GGAGGAAAGGAACGCCACAT+AGG | + | chr7.1:56838771-56838790 | MS.gene96355:CDS | 55.0% | |
GGGGATATATCCACCGGAAC+CGG | - | chr7.1:56838612-56838631 | None:intergenic | 55.0% | |
GGTAGTAGCGGTGCAAGCAA+GGG | - | chr7.1:56838651-56838670 | None:intergenic | 55.0% | |
TCACTTTCCGACCACCGTGT+CGG | + | chr7.1:56838702-56838721 | MS.gene96355:CDS | 55.0% | |
TCGGACAACCTCGGTAGTAG+CGG | - | chr7.1:56838663-56838682 | None:intergenic | 55.0% | |
! | GACTCGGTTCTCGAACCATC+CGG | + | chr7.1:56838569-56838588 | MS.gene96355:CDS | 55.0% |
AGTAGCGGTGCAAGCAAGGG+CGG | - | chr7.1:56838648-56838667 | None:intergenic | 60.0% | |
CGAACTTCATCCGGTTCCGG+TGG | + | chr7.1:56838599-56838618 | MS.gene96355:CDS | 60.0% | |
CGGTAGTAGCGGTGCAAGCA+AGG | - | chr7.1:56838652-56838671 | None:intergenic | 60.0% | |
CTCGCCCGTGTCGGAAATCT+CGG | + | chr7.1:56838733-56838752 | MS.gene96355:CDS | 60.0% | |
TGCTTGCACCGCTACTACCG+AGG | + | chr7.1:56838652-56838671 | MS.gene96355:CDS | 60.0% | |
ATGCAGGCCGACACGGTGGT+CGG | - | chr7.1:56838712-56838731 | None:intergenic | 65.0% | |
GAGCATGCAGGCCGACACGG+TGG | - | chr7.1:56838716-56838735 | None:intergenic | 70.0% | |
GCCTGCATGCTCGCCCGTGT+CGG | + | chr7.1:56838724-56838743 | MS.gene96355:CDS | 70.0% | |
GGCGAGCATGCAGGCCGACA+CGG | - | chr7.1:56838719-56838738 | None:intergenic | 70.0% | |
TCCGACACGGGCGAGCATGC+AGG | - | chr7.1:56838728-56838747 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 56837237 | 56838808 | 56837237 | ID=MS.gene96355 |
chr7.1 | mRNA | 56837237 | 56838808 | 56837237 | ID=MS.gene96355.t1;Parent=MS.gene96355 |
chr7.1 | exon | 56837237 | 56837422 | 56837237 | ID=MS.gene96355.t1.exon1;Parent=MS.gene96355.t1 |
chr7.1 | CDS | 56837237 | 56837422 | 56837237 | ID=cds.MS.gene96355.t1;Parent=MS.gene96355.t1 |
chr7.1 | exon | 56837514 | 56837588 | 56837514 | ID=MS.gene96355.t1.exon2;Parent=MS.gene96355.t1 |
chr7.1 | CDS | 56837514 | 56837588 | 56837514 | ID=cds.MS.gene96355.t1;Parent=MS.gene96355.t1 |
chr7.1 | exon | 56837793 | 56837930 | 56837793 | ID=MS.gene96355.t1.exon3;Parent=MS.gene96355.t1 |
chr7.1 | CDS | 56837793 | 56837930 | 56837793 | ID=cds.MS.gene96355.t1;Parent=MS.gene96355.t1 |
chr7.1 | exon | 56838461 | 56838808 | 56838461 | ID=MS.gene96355.t1.exon4;Parent=MS.gene96355.t1 |
chr7.1 | CDS | 56838461 | 56838808 | 56838461 | ID=cds.MS.gene96355.t1;Parent=MS.gene96355.t1 |
Gene Sequence |
Protein sequence |