Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96544.t1 | GAU12310.1 | 42.9 | 722 | 168 | 4 | 35 | 512 | 82 | 803 | 6.10E-138 | 501.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96544.t1 | Q9SZL7 | 34.9 | 209 | 129 | 3 | 214 | 418 | 250 | 455 | 5.4e-26 | 120.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96544.t1 | A0A2K3L9Y4 | 37.7 | 701 | 186 | 6 | 48 | 506 | 1 | 692 | 7.3e-109 | 404.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene96544.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96544.t1 | MTR_0853s0010 | 93.671 | 158 | 10 | 0 | 20 | 177 | 1 | 158 | 2.18e-106 | 315 |
| MS.gene96544.t1 | MTR_0734s0010 | 51.064 | 188 | 85 | 4 | 328 | 510 | 1 | 186 | 8.53e-55 | 182 |
| MS.gene96544.t1 | MTR_1g019850 | 51.786 | 168 | 68 | 3 | 18 | 179 | 38 | 198 | 6.11e-48 | 166 |
| MS.gene96544.t1 | MTR_2g024230 | 55.224 | 67 | 30 | 0 | 37 | 103 | 83 | 149 | 4.74e-19 | 84.7 |
| MS.gene96544.t1 | MTR_1g033820 | 53.571 | 56 | 26 | 0 | 32 | 87 | 15 | 70 | 7.13e-15 | 70.5 |
| MS.gene96544.t1 | MTR_6g048540 | 46.250 | 80 | 42 | 1 | 336 | 414 | 106 | 185 | 3.36e-13 | 69.7 |
| MS.gene96544.t1 | MTR_6g048540 | 48.052 | 77 | 37 | 2 | 35 | 108 | 19 | 95 | 3.33e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96544.t1 | AT4G38170 | 39.735 | 151 | 89 | 1 | 214 | 362 | 250 | 400 | 4.08e-31 | 127 |
| MS.gene96544.t1 | AT4G38180 | 36.585 | 164 | 104 | 0 | 221 | 384 | 494 | 657 | 1.02e-29 | 124 |
| MS.gene96544.t1 | AT4G38180 | 27.179 | 195 | 124 | 7 | 41 | 223 | 70 | 258 | 7.55e-13 | 71.6 |
| MS.gene96544.t1 | AT2G27110 | 38.571 | 140 | 86 | 0 | 221 | 360 | 439 | 578 | 3.19e-28 | 119 |
| MS.gene96544.t1 | AT2G27110 | 38.571 | 140 | 86 | 0 | 221 | 360 | 439 | 578 | 3.19e-28 | 119 |
| MS.gene96544.t1 | AT2G27110 | 38.571 | 140 | 86 | 0 | 221 | 360 | 294 | 433 | 3.39e-28 | 119 |
| MS.gene96544.t1 | AT4G15090 | 38.667 | 150 | 86 | 4 | 221 | 367 | 469 | 615 | 3.06e-23 | 104 |
| MS.gene96544.t1 | AT4G15090 | 38.667 | 150 | 86 | 4 | 221 | 367 | 469 | 615 | 3.06e-23 | 104 |
| MS.gene96544.t1 | AT4G15090 | 38.667 | 150 | 86 | 4 | 221 | 367 | 469 | 615 | 3.06e-23 | 104 |
| MS.gene96544.t1 | AT4G15090 | 38.667 | 150 | 86 | 4 | 221 | 367 | 469 | 615 | 3.06e-23 | 104 |
| MS.gene96544.t1 | AT4G15090 | 38.667 | 150 | 86 | 4 | 221 | 367 | 469 | 615 | 3.06e-23 | 104 |
| MS.gene96544.t1 | AT3G06250 | 34.444 | 180 | 104 | 2 | 219 | 390 | 554 | 727 | 1.38e-22 | 102 |
| MS.gene96544.t1 | AT3G06250 | 34.444 | 180 | 104 | 2 | 219 | 390 | 554 | 727 | 1.38e-22 | 102 |
| MS.gene96544.t1 | AT3G06250 | 34.444 | 180 | 104 | 2 | 219 | 390 | 554 | 727 | 1.38e-22 | 102 |
| MS.gene96544.t1 | AT5G18960 | 36.364 | 154 | 96 | 2 | 214 | 365 | 579 | 732 | 2.83e-21 | 98.2 |
| MS.gene96544.t1 | AT5G18960 | 36.364 | 154 | 96 | 2 | 214 | 365 | 579 | 732 | 2.83e-21 | 98.2 |
| MS.gene96544.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.27e-18 | 88.6 |
| MS.gene96544.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.27e-18 | 88.6 |
| MS.gene96544.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.27e-18 | 88.6 |
| MS.gene96544.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.57e-18 | 88.6 |
| MS.gene96544.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.57e-18 | 88.6 |
| MS.gene96544.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.62e-18 | 88.6 |
| MS.gene96544.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 373 | 512 | 4.06e-18 | 88.2 |
| MS.gene96544.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 373 | 512 | 4.14e-18 | 88.2 |
| MS.gene96544.t1 | AT1G76320 | 35.556 | 135 | 80 | 3 | 228 | 360 | 414 | 543 | 2.19e-17 | 85.9 |
| MS.gene96544.t1 | AT1G76320 | 35.556 | 135 | 80 | 3 | 228 | 360 | 414 | 543 | 2.19e-17 | 85.9 |
| MS.gene96544.t1 | AT1G76320 | 35.556 | 135 | 80 | 3 | 228 | 360 | 414 | 543 | 2.21e-17 | 85.9 |
| MS.gene96544.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 450 | 558 | 2.72e-17 | 85.9 |
| MS.gene96544.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 450 | 558 | 2.72e-17 | 85.9 |
| MS.gene96544.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 450 | 558 | 2.91e-17 | 85.5 |
| MS.gene96544.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 450 | 558 | 2.91e-17 | 85.5 |
| MS.gene96544.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 450 | 558 | 2.91e-17 | 85.5 |
| MS.gene96544.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 393 | 501 | 3.01e-17 | 85.5 |
| MS.gene96544.t1 | AT1G76320 | 35.556 | 135 | 80 | 3 | 228 | 360 | 414 | 543 | 3.33e-17 | 85.5 |
| MS.gene96544.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 464 | 572 | 3.40e-17 | 85.5 |
| MS.gene96544.t1 | AT3G22170 | 33.793 | 145 | 94 | 2 | 217 | 360 | 474 | 617 | 6.34e-17 | 84.7 |
| MS.gene96544.t1 | AT3G22170 | 33.793 | 145 | 94 | 2 | 217 | 360 | 474 | 617 | 6.34e-17 | 84.7 |
| MS.gene96544.t1 | AT1G80010 | 32.414 | 145 | 87 | 4 | 224 | 360 | 519 | 660 | 7.21e-15 | 78.2 |
| MS.gene96544.t1 | AT1G52520 | 31.724 | 145 | 91 | 4 | 223 | 359 | 492 | 636 | 6.35e-12 | 68.6 |
| MS.gene96544.t1 | AT1G10240 | 30.973 | 113 | 67 | 3 | 249 | 358 | 500 | 604 | 5.34e-11 | 65.9 |
| MS.gene96544.t1 | AT1G10240 | 30.973 | 113 | 67 | 3 | 249 | 358 | 500 | 604 | 5.34e-11 | 65.9 |
Find 55 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCAACTTTATGAATTTA+TGG | 0.151879 | 5.1:-42554016 | MS.gene96544:CDS |
| AAACATCTTTAAGAAGTTTC+AGG | 0.189455 | 5.1:-42554184 | MS.gene96544:CDS |
| TCTTCTTCGGCATTTGATTT+TGG | 0.192710 | 5.1:+42555810 | None:intergenic |
| CCTTTAGTTTGTGCCATTAT+CGG | 0.234963 | 5.1:+42553616 | None:intergenic |
| TATTGATCCTTGTATTGATA+TGG | 0.239238 | 5.1:-42555571 | MS.gene96544:CDS |
| TCTTTCGGAGTCCATCATTC+TGG | 0.292595 | 5.1:+42553723 | None:intergenic |
| CGCTTTAAAATATATTCATT+TGG | 0.310558 | 5.1:+42553937 | None:intergenic |
| GCAATACAATCACAGTAAAA+AGG | 0.311417 | 5.1:-42555395 | MS.gene96544:CDS |
| AACTCAGCTTCTTCAGTTGT+TGG | 0.313522 | 5.1:+42553652 | None:intergenic |
| CCAAGAGTATAAACTATCTT+AGG | 0.313740 | 5.1:-42555248 | MS.gene96544:CDS |
| AAATGTAATGATAGTCCATT+TGG | 0.314496 | 5.1:+42555302 | None:intergenic |
| CCTAAGATAGTTTATACTCT+TGG | 0.340102 | 5.1:+42555248 | None:intergenic |
| TGTCAACTTTATGAATTTAT+GGG | 0.343627 | 5.1:-42554015 | MS.gene96544:CDS |
| CTAAGATAGTTTATACTCTT+GGG | 0.346829 | 5.1:+42555249 | None:intergenic |
| GCTTGAAAAGATCATCAAAA+AGG | 0.372423 | 5.1:-42553746 | MS.gene96544:CDS |
| TGAAACTCTAGTTTGTCTTT+CGG | 0.388167 | 5.1:+42553708 | None:intergenic |
| ATTATGCAGACATATCTTGA+TGG | 0.397243 | 5.1:-42553989 | MS.gene96544:CDS |
| CATGTTATGACTATCTTCTT+CGG | 0.402279 | 5.1:+42555797 | None:intergenic |
| CTTTCTCTGATAGAGATTGT+TGG | 0.404977 | 5.1:-42555119 | MS.gene96544:CDS |
| TGGACAAAGGATGCTAATAT+TGG | 0.412634 | 5.1:-42553913 | MS.gene96544:CDS |
| ATAAAGTTGACAACCACATT+TGG | 0.431711 | 5.1:+42554026 | None:intergenic |
| GCTACAATGTTTAGCAATGA+AGG | 0.444472 | 5.1:-42555147 | MS.gene96544:CDS |
| AACATCAAGAACTGATTGTA+AGG | 0.444776 | 5.1:-42555358 | MS.gene96544:CDS |
| CAATATTCAAGATCCGATAA+TGG | 0.465564 | 5.1:-42553629 | MS.gene96544:CDS |
| TGGAAGAATCAAAAGTGGTC+TGG | 0.469244 | 5.1:-42553560 | MS.gene96544:CDS |
| ATTTGGCAGCCCTTGTATCA+AGG | 0.469613 | 5.1:+42554043 | None:intergenic |
| TGAACATCTAAGTCATGCTC+AGG | 0.476339 | 5.1:+42555606 | None:intergenic |
| GATCAAGAGGGCTTGCCTAC+CGG | 0.495549 | 5.1:-42555177 | MS.gene96544:CDS |
| CCGATAATGGCACAAACTAA+AGG | 0.499113 | 5.1:-42553616 | MS.gene96544:CDS |
| AATGTAATGATAGTCCATTT+GGG | 0.500833 | 5.1:+42555303 | None:intergenic |
| AGAAGAACATGTCAAATATG+TGG | 0.508664 | 5.1:-42553508 | MS.gene96544:CDS |
| ATATCTGTTTGCTCTAATGC+TGG | 0.513015 | 5.1:-42555450 | MS.gene96544:CDS |
| GGTCAGATAATAAACTTGCT+TGG | 0.514870 | 5.1:+42553809 | None:intergenic |
| ACAAACTAAAGGAAGACAAA+AGG | 0.527619 | 5.1:-42553605 | MS.gene96544:CDS |
| TGTCAAATATGTGGAGAAGA+AGG | 0.528520 | 5.1:-42553499 | MS.gene96544:CDS |
| GCTAATATTGGCATTATATG+TGG | 0.529640 | 5.1:-42553901 | MS.gene96544:CDS |
| TGTCATTACTATCAACATGT+TGG | 0.533945 | 5.1:+42555427 | None:intergenic |
| TTTATGTGGACCTTGATACA+AGG | 0.535609 | 5.1:-42554053 | MS.gene96544:CDS |
| AGAGTCATATACTGTTTATG+TGG | 0.549358 | 5.1:-42554067 | MS.gene96544:CDS |
| AAAGGTTAGCCACTTCATCA+AGG | 0.553222 | 5.1:-42554151 | MS.gene96544:CDS |
| TCATAACATGGAGGACATAG+AGG | 0.553789 | 5.1:-42555784 | MS.gene96544:intron |
| AGTTGAACAGTTTGATCAAG+AGG | 0.557965 | 5.1:-42555190 | MS.gene96544:CDS |
| TAAGATAGTTTATACTCTTG+GGG | 0.560800 | 5.1:+42555250 | None:intergenic |
| GTTGAACAGTTTGATCAAGA+GGG | 0.578599 | 5.1:-42555189 | MS.gene96544:CDS |
| CAACCTGGAAGAATCAAAAG+TGG | 0.582803 | 5.1:-42553565 | MS.gene96544:CDS |
| GTTTCAGGACGAGCTTGCAA+AGG | 0.593760 | 5.1:-42554169 | MS.gene96544:CDS |
| AATGCTCGAGTTTCTCAACC+TGG | 0.593762 | 5.1:-42553580 | MS.gene96544:CDS |
| CGAAGAAGATAGTCATAACA+TGG | 0.604552 | 5.1:-42555796 | MS.gene96544:CDS |
| CAATACTCATAATCATGCAA+TGG | 0.611156 | 5.1:-42555277 | MS.gene96544:CDS |
| TCAAATTCCATATCAATACA+AGG | 0.614636 | 5.1:+42555564 | None:intergenic |
| AGTAAAGTTTGACAAAGCAG+TGG | 0.629642 | 5.1:-42554316 | MS.gene96544:CDS |
| GATACAAGGGCTGCCAAATG+TGG | 0.650490 | 5.1:-42554039 | MS.gene96544:CDS |
| TTATGTGGACCTTGATACAA+GGG | 0.662546 | 5.1:-42554052 | MS.gene96544:CDS |
| GAACATCTAAGTCATGCTCA+GGG | 0.664893 | 5.1:+42555607 | None:intergenic |
| AGAAGATAGTCATAACATGG+AGG | 0.736903 | 5.1:-42555793 | MS.gene96544:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGAATGATTAATTTTTTT+TGG | - | chr5.1:42554288-42554307 | MS.gene96544:CDS | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | - | chr5.1:42554289-42554308 | MS.gene96544:CDS | 10.0% |
| !! | AATAATGGTTAAATATGATT+TGG | - | chr5.1:42554751-42554770 | MS.gene96544:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | + | chr5.1:42554751-42554770 | None:intergenic | 15.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | + | chr5.1:42554336-42554355 | None:intergenic | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | + | chr5.1:42554827-42554846 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | - | chr5.1:42554541-42554560 | MS.gene96544:intron | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | + | chr5.1:42554253-42554272 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | + | chr5.1:42554254-42554273 | None:intergenic | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | - | chr5.1:42555242-42555261 | MS.gene96544:CDS | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | - | chr5.1:42555241-42555260 | MS.gene96544:CDS | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | - | chr5.1:42555324-42555343 | MS.gene96544:CDS | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | - | chr5.1:42554765-42554784 | MS.gene96544:intron | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | + | chr5.1:42555323-42555342 | None:intergenic | 20.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | + | chr5.1:42553958-42553977 | None:intergenic | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | + | chr5.1:42553957-42553976 | None:intergenic | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | - | chr5.1:42555034-42555053 | MS.gene96544:intron | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | + | chr5.1:42554011-42554030 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | + | chr5.1:42554010-42554029 | None:intergenic | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+TGG | - | chr5.1:42553931-42553950 | MS.gene96544:CDS | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | + | chr5.1:42553696-42553715 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | + | chr5.1:42554536-42554555 | None:intergenic | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | - | chr5.1:42555073-42555092 | MS.gene96544:CDS | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | - | chr5.1:42553744-42553763 | MS.gene96544:CDS | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | - | chr5.1:42554715-42554734 | MS.gene96544:intron | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | + | chr5.1:42554667-42554686 | None:intergenic | 25.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | - | chr5.1:42553686-42553705 | MS.gene96544:CDS | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | - | chr5.1:42553750-42553769 | MS.gene96544:CDS | 25.0% |
| AACATCAAGAACTGATTGTA+AGG | - | chr5.1:42553899-42553918 | MS.gene96544:CDS | 30.0% | |
| AAGGACAAAATCGAGAAAAA+TGG | - | chr5.1:42555125-42555144 | MS.gene96544:CDS | 30.0% | |
| ACAAACTAAAGGAAGACAAA+AGG | - | chr5.1:42555652-42555671 | MS.gene96544:intron | 30.0% | |
| AGAAGAACATGTCAAATATG+TGG | - | chr5.1:42555749-42555768 | MS.gene96544:intron | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | - | chr5.1:42555190-42555209 | MS.gene96544:CDS | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | - | chr5.1:42555126-42555145 | MS.gene96544:CDS | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | + | chr5.1:42555234-42555253 | None:intergenic | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | - | chr5.1:42555268-42555287 | MS.gene96544:CDS | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | - | chr5.1:42553980-42553999 | MS.gene96544:CDS | 30.0% | |
| CAATATTCAAGATCCGATAA+TGG | - | chr5.1:42555628-42555647 | MS.gene96544:CDS | 30.0% | |
| CATGTTATGACTATCTTCTT+CGG | + | chr5.1:42553463-42553482 | None:intergenic | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | + | chr5.1:42554012-42554031 | None:intergenic | 30.0% | |
| CTCTAATTTCATACAAACCT+TGG | + | chr5.1:42554793-42554812 | None:intergenic | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | - | chr5.1:42553862-42553881 | MS.gene96544:CDS | 30.0% | |
| GCTAATATTGGCATTATATG+TGG | - | chr5.1:42555356-42555375 | MS.gene96544:CDS | 30.0% | |
| GCTTGAAAAGATCATCAAAA+AGG | - | chr5.1:42555511-42555530 | MS.gene96544:CDS | 30.0% | |
| TGATGATTCAATCCAGTAAA+TGG | + | chr5.1:42554410-42554429 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | - | chr5.1:42554798-42554817 | MS.gene96544:intron | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | + | chr5.1:42553833-42553852 | None:intergenic | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | + | chr5.1:42555472-42555491 | None:intergenic | 30.0% |
| ! | CATCATCAGTCCATTTTATT+CGG | - | chr5.1:42554428-42554447 | MS.gene96544:intron | 30.0% |
| ! | CCAAGAGTATAAACTATCTT+AGG | - | chr5.1:42554009-42554028 | MS.gene96544:CDS | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | - | chr5.1:42554026-42554045 | MS.gene96544:CDS | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | - | chr5.1:42554025-42554044 | MS.gene96544:CDS | 30.0% |
| ! | TGAAACTCTAGTTTGTCTTT+CGG | + | chr5.1:42555552-42555571 | None:intergenic | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | - | chr5.1:42554486-42554505 | MS.gene96544:intron | 30.0% |
| !! | TTGAAGATTTTGAGGAAGAT+TGG | - | chr5.1:42554723-42554742 | MS.gene96544:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | - | chr5.1:42554326-42554345 | MS.gene96544:intron | 30.0% |
| !!! | ATATGAAGACCTTTTTTTGC+TGG | - | chr5.1:42554834-42554853 | MS.gene96544:intron | 30.0% |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | - | chr5.1:42554300-42554319 | MS.gene96544:CDS | 30.0% |
| !!! | CAACATCCAGTTTTTTAGAT+CGG | + | chr5.1:42554181-42554200 | None:intergenic | 30.0% |
| !!! | TATGAAGACCTTTTTTTGCT+GGG | - | chr5.1:42554835-42554854 | MS.gene96544:intron | 30.0% |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | - | chr5.1:42555331-42555350 | MS.gene96544:CDS | 30.0% |
| AGAAGATAGTCATAACATGG+AGG | - | chr5.1:42553464-42553483 | MS.gene96544:CDS | 35.0% | |
| AGATCTCCGATCTAAAAAAC+TGG | - | chr5.1:42554172-42554191 | MS.gene96544:CDS | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | - | chr5.1:42554941-42554960 | MS.gene96544:intron | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | - | chr5.1:42554067-42554086 | MS.gene96544:CDS | 35.0% | |
| ATATCTGTTTGCTCTAATGC+TGG | - | chr5.1:42553807-42553826 | MS.gene96544:CDS | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | + | chr5.1:42554441-42554460 | None:intergenic | 35.0% | |
| CATAAACGATGTCGAGTATT+AGG | + | chr5.1:42554596-42554615 | None:intergenic | 35.0% | |
| CGAAGAAGATAGTCATAACA+TGG | - | chr5.1:42553461-42553480 | MS.gene96544:CDS | 35.0% | |
| CGATCTAAAAAACTGGATGT+TGG | - | chr5.1:42554179-42554198 | MS.gene96544:CDS | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | - | chr5.1:42554138-42554157 | MS.gene96544:CDS | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | - | chr5.1:42554773-42554792 | MS.gene96544:intron | 35.0% | |
| GCTACAATGTTTAGCAATGA+AGG | - | chr5.1:42554110-42554129 | MS.gene96544:CDS | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | + | chr5.1:42554645-42554664 | None:intergenic | 35.0% | |
| GTATTCATCCCAGCAAAAAA+AGG | + | chr5.1:42554846-42554865 | None:intergenic | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | - | chr5.1:42554068-42554087 | MS.gene96544:CDS | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | - | chr5.1:42555344-42555363 | MS.gene96544:CDS | 35.0% | |
| TGTCAAATATGTGGAGAAGA+AGG | - | chr5.1:42555758-42555777 | MS.gene96544:intron | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | - | chr5.1:42555205-42555224 | MS.gene96544:CDS | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | - | chr5.1:42555204-42555223 | MS.gene96544:CDS | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | + | chr5.1:42554102-42554121 | None:intergenic | 35.0% |
| ! | AAACGGAGAAGTCTTTTACA+TGG | - | chr5.1:42554471-42554490 | MS.gene96544:intron | 35.0% |
| ! | GGTCAGATAATAAACTTGCT+TGG | + | chr5.1:42555451-42555470 | None:intergenic | 35.0% |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | - | chr5.1:42554493-42554512 | MS.gene96544:intron | 35.0% |
| ! | TGCTTTGTTGCAAGATGAAA+CGG | - | chr5.1:42554454-42554473 | MS.gene96544:intron | 35.0% |
| !! | CCTTTAGTTTGTGCCATTAT+CGG | + | chr5.1:42555644-42555663 | None:intergenic | 35.0% |
| !! | TCTTCTTCGGCATTTGATTT+TGG | + | chr5.1:42553450-42553469 | None:intergenic | 35.0% |
| !! | TTGATGATCTTTTCAAGCTC+TGG | + | chr5.1:42555509-42555528 | None:intergenic | 35.0% |
| AACTCAGCTTCTTCAGTTGT+TGG | + | chr5.1:42555608-42555627 | None:intergenic | 40.0% | |
| AAGCAAAAATGTGGCCCAAA+TGG | - | chr5.1:42553940-42553959 | MS.gene96544:CDS | 40.0% | |
| AATCCAGTAAATGGCGCAAA+TGG | + | chr5.1:42554401-42554420 | None:intergenic | 40.0% | |
| CAACCTGGAAGAATCAAAAG+TGG | - | chr5.1:42555692-42555711 | MS.gene96544:intron | 40.0% | |
| CATCAAAAAGGCCAGAATGA+TGG | - | chr5.1:42555523-42555542 | MS.gene96544:CDS | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | - | chr5.1:42554600-42554619 | MS.gene96544:intron | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | - | chr5.1:42554500-42554519 | MS.gene96544:intron | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | + | chr5.1:42553653-42553672 | None:intergenic | 40.0% | |
| GGAAGATTGGCACCAAATAA+TGG | - | chr5.1:42554736-42554755 | MS.gene96544:intron | 40.0% | |
| GTGCCATAAAAAAATGGGTG+GGG | - | chr5.1:42554031-42554050 | MS.gene96544:CDS | 40.0% | |
| TCATAACATGGAGGACATAG+AGG | - | chr5.1:42553473-42553492 | MS.gene96544:CDS | 40.0% | |
| TGAAACTTGGCTAATGGCAA+TGG | - | chr5.1:42554499-42554518 | MS.gene96544:intron | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | + | chr5.1:42553654-42553673 | None:intergenic | 40.0% | |
| TGGAAGAATCAAAAGTGGTC+TGG | - | chr5.1:42555697-42555716 | MS.gene96544:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | - | chr5.1:42555106-42555125 | MS.gene96544:CDS | 40.0% |
| ! | AGGTGCCATAAAAAAATGGG+TGG | - | chr5.1:42554029-42554048 | MS.gene96544:CDS | 40.0% |
| ! | CCGATAATGGCACAAACTAA+AGG | - | chr5.1:42555641-42555660 | MS.gene96544:intron | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | + | chr5.1:42555118-42555137 | None:intergenic | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | - | chr5.1:42554030-42554049 | MS.gene96544:CDS | 40.0% |
| !! | AGACCACTTTTGATTCTTCC+AGG | + | chr5.1:42555698-42555717 | None:intergenic | 40.0% |
| !!! | CTTCCCCACCCATTTTTTTA+TGG | + | chr5.1:42554037-42554056 | None:intergenic | 40.0% |
| AATGCTCGAGTTTCTCAACC+TGG | - | chr5.1:42555677-42555696 | MS.gene96544:intron | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | + | chr5.1:42555217-42555236 | None:intergenic | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | - | chr5.1:42554853-42554872 | MS.gene96544:intron | 45.0% | |
| GATCAAGATAAGGCGATGTG+CGG | - | chr5.1:42554551-42554570 | MS.gene96544:intron | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | - | chr5.1:42554565-42554584 | MS.gene96544:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | + | chr5.1:42554925-42554944 | None:intergenic | 45.0% | |
| TCTTTCGGAGTCCATCATTC+TGG | + | chr5.1:42555537-42555556 | None:intergenic | 45.0% | |
| ! | ATGCCATTTGCGCCATTTAC+TGG | - | chr5.1:42554395-42554414 | MS.gene96544:intron | 45.0% |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | + | chr5.1:42554098-42554117 | None:intergenic | 45.0% |
| ACTTGGCTAATGGCAATGGG+TGG | - | chr5.1:42554503-42554522 | MS.gene96544:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | - | chr5.1:42555218-42555237 | MS.gene96544:CDS | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | - | chr5.1:42555088-42555107 | MS.gene96544:CDS | 50.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | - | chr5.1:42554306-42554325 | MS.gene96544:CDS | 50.0% |
| GATCAAGAGGGCTTGCCTAC+CGG | - | chr5.1:42554080-42554099 | MS.gene96544:CDS | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | - | chr5.1:42554310-42554329 | MS.gene96544:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 42553438 | 42555841 | 42553438 | ID=MS.gene96544 |
| chr5.1 | mRNA | 42553438 | 42555841 | 42553438 | ID=MS.gene96544.t1;Parent=MS.gene96544 |
| chr5.1 | exon | 42555785 | 42555841 | 42555785 | ID=MS.gene96544.t1.exon1;Parent=MS.gene96544.t1 |
| chr5.1 | CDS | 42555785 | 42555841 | 42555785 | ID=cds.MS.gene96544.t1;Parent=MS.gene96544.t1 |
| chr5.1 | exon | 42555052 | 42555658 | 42555052 | ID=MS.gene96544.t1.exon2;Parent=MS.gene96544.t1 |
| chr5.1 | CDS | 42555052 | 42555658 | 42555052 | ID=cds.MS.gene96544.t1;Parent=MS.gene96544.t1 |
| chr5.1 | exon | 42553438 | 42554336 | 42553438 | ID=MS.gene96544.t1.exon3;Parent=MS.gene96544.t1 |
| chr5.1 | CDS | 42553438 | 42554336 | 42553438 | ID=cds.MS.gene96544.t1;Parent=MS.gene96544.t1 |
| Gene Sequence |
| Protein sequence |
