Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96615.t1 | RHN47222.1 | 86.1 | 79 | 11 | 0 | 224 | 302 | 45 | 123 | 7.60E-32 | 147.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96615.t1 | F4JI46 | 82.9 | 70 | 12 | 0 | 233 | 302 | 159 | 228 | 1.7e-27 | 124.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96615.t1 | A0A072U172 | 86.1 | 79 | 11 | 0 | 224 | 302 | 45 | 123 | 5.5e-32 | 147.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene96615.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96615.t1 | MTR_7g081615 | 86.076 | 79 | 11 | 0 | 224 | 302 | 45 | 123 | 3.07e-43 | 146 |
| MS.gene96615.t1 | MTR_7g107560 | 94.286 | 70 | 4 | 0 | 233 | 302 | 141 | 210 | 1.16e-37 | 139 |
| MS.gene96615.t1 | MTR_1g089500 | 85.714 | 70 | 10 | 0 | 233 | 302 | 148 | 217 | 1.74e-34 | 130 |
| MS.gene96615.t1 | MTR_4g052850 | 73.529 | 68 | 18 | 0 | 233 | 300 | 173 | 240 | 1.10e-28 | 113 |
| MS.gene96615.t1 | MTR_2g086580 | 72.059 | 68 | 19 | 0 | 233 | 300 | 154 | 221 | 3.07e-27 | 110 |
| MS.gene96615.t1 | MTR_7g104900 | 72.059 | 68 | 19 | 0 | 233 | 300 | 178 | 245 | 7.52e-27 | 109 |
| MS.gene96615.t1 | MTR_8g026680 | 67.647 | 68 | 22 | 0 | 233 | 300 | 190 | 257 | 2.10e-26 | 108 |
| MS.gene96615.t1 | MTR_5g093860 | 48.551 | 138 | 49 | 4 | 38 | 153 | 248 | 385 | 4.56e-24 | 102 |
| MS.gene96615.t1 | MTR_5g093860 | 27.706 | 231 | 104 | 7 | 10 | 213 | 76 | 270 | 9.77e-11 | 62.8 |
| MS.gene96615.t1 | MTR_5g064420 | 58.824 | 68 | 24 | 1 | 233 | 300 | 88 | 151 | 2.94e-18 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96615.t1 | AT4G03100 | 82.857 | 70 | 12 | 0 | 233 | 302 | 159 | 228 | 9.71e-33 | 125 |
| MS.gene96615.t1 | AT2G46710 | 75.000 | 68 | 17 | 0 | 233 | 300 | 184 | 251 | 7.10e-29 | 115 |
| MS.gene96615.t1 | AT3G11490 | 70.000 | 70 | 21 | 0 | 233 | 302 | 172 | 241 | 1.38e-26 | 108 |
| MS.gene96615.t1 | AT5G22400 | 70.000 | 70 | 21 | 0 | 233 | 302 | 196 | 265 | 2.14e-26 | 108 |
| MS.gene96615.t1 | AT1G08340 | 67.143 | 70 | 23 | 0 | 233 | 302 | 82 | 151 | 9.69e-26 | 104 |
| MS.gene96615.t1 | AT5G55230 | 42.754 | 138 | 57 | 4 | 38 | 153 | 247 | 384 | 5.47e-20 | 90.5 |
| MS.gene96615.t1 | AT5G55230 | 42.754 | 138 | 57 | 4 | 38 | 153 | 247 | 384 | 5.47e-20 | 90.5 |
| MS.gene96615.t1 | AT4G26760 | 41.304 | 138 | 59 | 4 | 38 | 153 | 247 | 384 | 8.06e-17 | 81.3 |
Find 62 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTAACGGCGCCCTTGCTC+TGG | 0.237388 | 6.3:+57516463 | MS.gene96615:CDS |
| TGATGTTGAAAGACATTAAA+AGG | 0.240263 | 6.3:+57516881 | MS.gene96615:CDS |
| GCTTAATTAAAGCATGGTTT+AGG | 0.269626 | 6.3:+57518036 | MS.gene96615:CDS |
| AACTGAATTACGTGTTGATA+TGG | 0.286348 | 6.3:+57516705 | MS.gene96615:CDS |
| ACTATGGCATCGATTGATTA+TGG | 0.308491 | 6.3:+57516670 | MS.gene96615:CDS |
| CTTAATTAAAGCATGGTTTA+GGG | 0.310350 | 6.3:+57518037 | MS.gene96615:CDS |
| AAACTAACCTTATTGCAATT+AGG | 0.311300 | 6.3:-57517584 | None:intergenic |
| CTTTCTGATGCAAATGTTCC+CGG | 0.352759 | 6.3:+57517320 | MS.gene96615:CDS |
| CTTCCTTCAGGAGTGTTAGA+TGG | 0.358229 | 6.3:+57518062 | MS.gene96615:CDS |
| GGCACCACCACAACGGTAGA+TGG | 0.373724 | 6.3:+57515967 | MS.gene96615:intron |
| TGGTTTAGGGAACTTCCTTC+AGG | 0.390002 | 6.3:+57518050 | MS.gene96615:CDS |
| ACTCATACCTAATTGCAATA+AGG | 0.396247 | 6.3:+57517577 | MS.gene96615:CDS |
| ATGAACCTCAGCTGTGGTAC+TGG | 0.431014 | 6.3:-57516815 | None:intergenic |
| CAATGTACATCAATGTCAAT+TGG | 0.443981 | 6.3:-57518005 | None:intergenic |
| GGCTTCAAGACATAAGACTA+TGG | 0.447388 | 6.3:+57516654 | MS.gene96615:CDS |
| CAACGTCCAACATATCTTCT+CGG | 0.460227 | 6.3:-57516756 | None:intergenic |
| ATTGATGTACATTGCTTGGC+AGG | 0.465018 | 6.3:+57518014 | MS.gene96615:CDS |
| AAAGTTCAAAACCTCTTCAC+CGG | 0.479810 | 6.3:-57517339 | None:intergenic |
| GGAAACAAGTATCTCTACCT+TGG | 0.482679 | 6.3:+57516014 | MS.gene96615:CDS |
| TGCTCTGGGTCTGATTGAGC+AGG | 0.487382 | 6.3:+57516478 | MS.gene96615:CDS |
| TTGAGGGAGCAATTGAATAG+TGG | 0.488849 | 6.3:+57517975 | MS.gene96615:CDS |
| TTTGAGATTCTTTATGAGAG+AGG | 0.491542 | 6.3:+57515273 | MS.gene96615:CDS |
| GAGGTTCATCCACGCTTGAA+TGG | 0.507367 | 6.3:+57516829 | MS.gene96615:CDS |
| TTGCATTCAAGAACTTCCTC+AGG | 0.507388 | 6.3:-57518092 | None:intergenic |
| GAGATTTGAAAGCAAGGTGA+AGG | 0.508249 | 6.3:+57516597 | MS.gene96615:CDS |
| TCAACTTACTGTTGGTTCCA+AGG | 0.514717 | 6.3:-57516031 | None:intergenic |
| GCTTGAATGGTTCTACTGCT+AGG | 0.515593 | 6.3:+57516842 | MS.gene96615:CDS |
| ACTAACGGCGCCCTTGCTCT+GGG | 0.518709 | 6.3:+57516464 | MS.gene96615:CDS |
| GTATACAGAGGCGAAGAGAC+AGG | 0.519368 | 6.3:+57517525 | MS.gene96615:intron |
| CGGTGAAGAGGAACATTTGA+GGG | 0.519428 | 6.3:+57517959 | MS.gene96615:CDS |
| GAAACGAATATCTGAGCAAA+GGG | 0.520239 | 6.3:+57516388 | MS.gene96615:CDS |
| TCTGAGCAAAGGGATCAGTT+TGG | 0.521910 | 6.3:+57516398 | MS.gene96615:CDS |
| TGACATTGATGTACATTGCT+TGG | 0.528199 | 6.3:+57518010 | MS.gene96615:CDS |
| AGTTGAGAGATTTGAAAGCA+AGG | 0.529607 | 6.3:+57516591 | MS.gene96615:CDS |
| GATGGGAAGCACGGATCAGA+AGG | 0.530381 | 6.3:+57515985 | MS.gene96615:CDS |
| CTCAATCAGACCCAGAGCAA+GGG | 0.536025 | 6.3:-57516474 | None:intergenic |
| GCACCACCACAACGGTAGAT+GGG | 0.566901 | 6.3:+57515968 | MS.gene96615:CDS |
| GCTCAATCAGACCCAGAGCA+AGG | 0.574846 | 6.3:-57516475 | None:intergenic |
| TGCAAATGTTCCCGGTGAAG+AGG | 0.582249 | 6.3:+57517328 | MS.gene96615:CDS |
| TGGCAGGCTTAATTAAAGCA+TGG | 0.585096 | 6.3:+57518030 | MS.gene96615:CDS |
| GAAGCATACAAAAGTCATAG+AGG | 0.586514 | 6.3:+57516633 | MS.gene96615:CDS |
| AAATCTAGAAAACGGTGAAG+AGG | 0.588288 | 6.3:+57517947 | MS.gene96615:CDS |
| GACAGAAGCTGAGATATAGC+AGG | 0.590913 | 6.3:-57516429 | None:intergenic |
| TATATGTGATGTTCTACGTA+TGG | 0.597850 | 6.3:+57516786 | MS.gene96615:CDS |
| AGTCCATCTAACACTCCTGA+AGG | 0.599306 | 6.3:-57518065 | None:intergenic |
| CGAAACGAATATCTGAGCAA+AGG | 0.601354 | 6.3:+57516387 | MS.gene96615:CDS |
| ACGGTGAAGAGGAACATTTG+AGG | 0.608771 | 6.3:+57517958 | MS.gene96615:CDS |
| GTCGATGAAGTCACTACTAA+CGG | 0.615354 | 6.3:+57516449 | MS.gene96615:CDS |
| GTGCTTCCCATCTACCGTTG+TGG | 0.621399 | 6.3:-57515974 | None:intergenic |
| AACCTCAGCTGTGGTACTGG+AGG | 0.625534 | 6.3:-57516812 | None:intergenic |
| AAGTTCAAAACCTCTTCACC+GGG | 0.632110 | 6.3:-57517338 | None:intergenic |
| TTTGAGCCGAGAAGATATGT+TGG | 0.632379 | 6.3:+57516750 | MS.gene96615:CDS |
| CTCCTCCAGTACCACAGCTG+AGG | 0.636208 | 6.3:+57516810 | MS.gene96615:CDS |
| TTTCAACATCAAGAATGTGT+CGG | 0.636903 | 6.3:-57516869 | None:intergenic |
| CTTCCCATCTACCGTTGTGG+TGG | 0.642364 | 6.3:-57515971 | None:intergenic |
| ATGGGAAGCACGGATCAGAA+GGG | 0.672928 | 6.3:+57515986 | MS.gene96615:CDS |
| ACAACGGTAGATGGGAAGCA+CGG | 0.674251 | 6.3:+57515976 | MS.gene96615:CDS |
| GCAGTAGAACCATTCAAGCG+TGG | 0.675695 | 6.3:-57516838 | None:intergenic |
| GCGTGGATGAACCTCAGCTG+TGG | 0.686403 | 6.3:-57516821 | None:intergenic |
| GTTAGATGGACTTTCACCTG+AGG | 0.686418 | 6.3:+57518076 | MS.gene96615:CDS |
| TAAAAGGCAGAGACTGCACA+AGG | 0.702377 | 6.3:+57516897 | MS.gene96615:CDS |
| TGTTGCAGGCACCACCACAA+CGG | 0.717676 | 6.3:+57515960 | MS.gene96615:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAATTCAAAATATTAA+AGG | - | chr6.3:57516283-57516302 | None:intergenic | 10.0% |
| !!! | TTTTTAATTAATGAATTTTC+AGG | + | chr6.3:57517905-57517924 | MS.gene96615:intron | 10.0% |
| !! | CAAATATTCTTTCTATAAAA+AGG | - | chr6.3:57515356-57515375 | None:intergenic | 15.0% |
| !!! | AAGTAAATCAATCAATTTTA+CGG | - | chr6.3:57516144-57516163 | None:intergenic | 15.0% |
| !!! | GAAATGATATTTTTAGATAT+CGG | - | chr6.3:57515716-57515735 | None:intergenic | 15.0% |
| !!! | TAATATTTTGAATTCATTTC+TGG | + | chr6.3:57516284-57516303 | MS.gene96615:intron | 15.0% |
| !!! | TTTTGTATAAATCTAGAAAA+CGG | + | chr6.3:57517939-57517958 | MS.gene96615:CDS | 15.0% |
| !! | AATTAAAAAGTGATAAAAGC+AGG | - | chr6.3:57517894-57517913 | None:intergenic | 20.0% |
| !! | GAGATAATTACTCATATAAT+TGG | + | chr6.3:57515935-57515954 | MS.gene96615:intron | 20.0% |
| !! | TTTCAATTATTTGTGTAGAA+GGG | + | chr6.3:57516935-57516954 | MS.gene96615:intron | 20.0% |
| !!! | ATCATAATTTTTGTATACAG+AGG | + | chr6.3:57517513-57517532 | MS.gene96615:intron | 20.0% |
| !!! | TAACATTTTGCAAAACAAAA+TGG | - | chr6.3:57515516-57515535 | None:intergenic | 20.0% |
| !!! | TTTACTTTCATACATTGTTT+TGG | + | chr6.3:57516157-57516176 | MS.gene96615:intron | 20.0% |
| ! | AAACTAACCTTATTGCAATT+AGG | - | chr6.3:57517587-57517606 | None:intergenic | 25.0% |
| ! | ACAAAAGAAGAACTTTCTAA+GGG | + | chr6.3:57517244-57517263 | MS.gene96615:intron | 25.0% |
| ! | AGCAGGAAAAAAATTATAGT+TGG | - | chr6.3:57517877-57517896 | None:intergenic | 25.0% |
| ! | ATAATGTTGAAGAGTCAAAA+AGG | - | chr6.3:57515598-57515617 | None:intergenic | 25.0% |
| ! | ATTATGATCATGAGACAAAA+CGG | - | chr6.3:57517501-57517520 | None:intergenic | 25.0% |
| ! | ATTCTGTTTGATTCAATGTT+TGG | + | chr6.3:57517391-57517410 | MS.gene96615:intron | 25.0% |
| ! | CAAGTTTCTTCCTATAAAAA+AGG | - | chr6.3:57515319-57515338 | None:intergenic | 25.0% |
| ! | CAATGTTCTTATGATTCAAA+AGG | + | chr6.3:57517739-57517758 | MS.gene96615:intron | 25.0% |
| ! | CATAAAATCCATTTCAATTG+CGG | - | chr6.3:57515852-57515871 | None:intergenic | 25.0% |
| ! | CTTAATTAAAGCATGGTTTA+GGG | + | chr6.3:57518037-57518056 | MS.gene96615:CDS | 25.0% |
| ! | CTTTCAATTATTTGTGTAGA+AGG | + | chr6.3:57516934-57516953 | MS.gene96615:intron | 25.0% |
| ! | GAAATAGTACACTATAATCT+TGG | + | chr6.3:57515541-57515560 | MS.gene96615:intron | 25.0% |
| ! | TAATGTTGAAGAGTCAAAAA+GGG | - | chr6.3:57515597-57515616 | None:intergenic | 25.0% |
| ! | TGATGTTGAAAGACATTAAA+AGG | + | chr6.3:57516881-57516900 | MS.gene96615:CDS | 25.0% |
| ! | TTTAGGGATATTAAAAAGTG+AGG | + | chr6.3:57515481-57515500 | MS.gene96615:intron | 25.0% |
| !! | ATATCAGTTACCATAACTTT+TGG | - | chr6.3:57516540-57516559 | None:intergenic | 25.0% |
| !! | TAAGATCAAATATTTCGAGT+CGG | - | chr6.3:57515648-57515667 | None:intergenic | 25.0% |
| !! | TCTGGTTAACTTTTAATCTA+TGG | + | chr6.3:57516302-57516321 | MS.gene96615:intron | 25.0% |
| !! | TGATTCTGTCATTTAACTTA+CGG | + | chr6.3:57516112-57516131 | MS.gene96615:intron | 25.0% |
| !! | TGATTTTTGTGTATATCTGA+AGG | + | chr6.3:57517292-57517311 | MS.gene96615:intron | 25.0% |
| !!! | ATCTAGCTTTGTAACTTTTA+GGG | + | chr6.3:57515465-57515484 | MS.gene96615:intron | 25.0% |
| !!! | CAATTGAAATGGATTTTATG+GGG | + | chr6.3:57515852-57515871 | MS.gene96615:intron | 25.0% |
| !!! | CTTCTGAAGTTTATAAGTTT+GGG | + | chr6.3:57516512-57516531 | MS.gene96615:intron | 25.0% |
| !!! | GCAATTGAAATGGATTTTAT+GGG | + | chr6.3:57515851-57515870 | MS.gene96615:intron | 25.0% |
| !!! | GTTGGTTATTCCTTTTTTAT+AGG | + | chr6.3:57515306-57515325 | MS.gene96615:intron | 25.0% |
| !!! | TTCTGAAGTTTATAAGTTTG+GGG | + | chr6.3:57516513-57516532 | MS.gene96615:intron | 25.0% |
| !!! | TTTTTTTATGAAGACTGAAC+TGG | + | chr6.3:57516567-57516586 | MS.gene96615:intron | 25.0% |
| AAAACCTTCTAAGCTAAGAA+AGG | - | chr6.3:57515762-57515781 | None:intergenic | 30.0% | |
| ACTCATACCTAATTGCAATA+AGG | + | chr6.3:57517577-57517596 | MS.gene96615:CDS | 30.0% | |
| ATAGTACACTATAATCTTGG+TGG | + | chr6.3:57515544-57515563 | MS.gene96615:intron | 30.0% | |
| ATATCCTTTCTTAGCTTAGA+AGG | + | chr6.3:57515755-57515774 | MS.gene96615:intron | 30.0% | |
| ATTGAAATCTACCACCAATA+AGG | - | chr6.3:57517053-57517072 | None:intergenic | 30.0% | |
| ATTGAATCAAACAGAATCAG+AGG | - | chr6.3:57517388-57517407 | None:intergenic | 30.0% | |
| CAATGTACATCAATGTCAAT+TGG | - | chr6.3:57518008-57518027 | None:intergenic | 30.0% | |
| CACAAAAGAAGAACTTTCTA+AGG | + | chr6.3:57517243-57517262 | MS.gene96615:intron | 30.0% | |
| CCAAACTTATAAACTTCAGA+AGG | - | chr6.3:57516514-57516533 | None:intergenic | 30.0% | |
| GACTCGAAATATTTGATCTT+AGG | + | chr6.3:57515647-57515666 | MS.gene96615:intron | 30.0% | |
| GCTTAATTAAAGCATGGTTT+AGG | + | chr6.3:57518036-57518055 | MS.gene96615:CDS | 30.0% | |
| GTAGAAATTCAACTTACTGT+TGG | - | chr6.3:57516042-57516061 | None:intergenic | 30.0% | |
| TATATGTGATGTTCTACGTA+TGG | + | chr6.3:57516786-57516805 | MS.gene96615:CDS | 30.0% | |
| TATTTGTAATTCTTGCACAG+TGG | + | chr6.3:57516202-57516221 | MS.gene96615:intron | 30.0% | |
| TCAAAGCAAAACAAACATTG+AGG | - | chr6.3:57517152-57517171 | None:intergenic | 30.0% | |
| TCAAATTTCTCCCTTCAAAT+CGG | + | chr6.3:57516986-57517005 | MS.gene96615:intron | 30.0% | |
| TCACAAATCACATCAGAATA+TGG | - | chr6.3:57517669-57517688 | None:intergenic | 30.0% | |
| TCATATAATTGGTATGTTGC+AGG | + | chr6.3:57515946-57515965 | MS.gene96615:intron | 30.0% | |
| TCTCAAAAACCTATCCATTA+AGG | + | chr6.3:57515619-57515638 | MS.gene96615:intron | 30.0% | |
| TGATTCAATGTTTGGTAGAT+TGG | + | chr6.3:57517399-57517418 | MS.gene96615:intron | 30.0% | |
| TTATTTGCTTTCCTCCTTAT+TGG | + | chr6.3:57517036-57517055 | MS.gene96615:intron | 30.0% | |
| TTGTCATTCAATGTCTGATA+TGG | + | chr6.3:57515409-57515428 | MS.gene96615:intron | 30.0% | |
| TTTCAACATCAAGAATGTGT+CGG | - | chr6.3:57516872-57516891 | None:intergenic | 30.0% | |
| ! | AACTGAATTACGTGTTGATA+TGG | + | chr6.3:57516705-57516724 | MS.gene96615:CDS | 30.0% |
| ! | ACTTCATATTTTGTGTTTGC+AGG | + | chr6.3:57517178-57517197 | MS.gene96615:intron | 30.0% |
| ! | ATTTTATGGGGCTTAAAGAA+GGG | + | chr6.3:57515864-57515883 | MS.gene96615:intron | 30.0% |
| ! | GATTCTGTCATTTAACTTAC+GGG | + | chr6.3:57516113-57516132 | MS.gene96615:intron | 30.0% |
| ! | TATAGTTGGTTCACATAATC+TGG | - | chr6.3:57517863-57517882 | None:intergenic | 30.0% |
| ! | TTTGAGATTCTTTATGAGAG+AGG | + | chr6.3:57515273-57515292 | MS.gene96615:CDS | 30.0% |
| ! | TTTTTCACACTGTTCATACT+CGG | + | chr6.3:57516246-57516265 | MS.gene96615:intron | 30.0% |
| !! | CCTTCTGAAGTTTATAAGTT+TGG | + | chr6.3:57516511-57516530 | MS.gene96615:intron | 30.0% |
| !! | CGCAATTGAAATGGATTTTA+TGG | + | chr6.3:57515850-57515869 | MS.gene96615:intron | 30.0% |
| !! | TTAATGAATTTTCAGGCTGA+AGG | + | chr6.3:57517912-57517931 | MS.gene96615:intron | 30.0% |
| !!! | CATCTAGCTTTGTAACTTTT+AGG | + | chr6.3:57515464-57515483 | MS.gene96615:intron | 30.0% |
| !!! | TTTGTTGCTTTTCGTATTGT+TGG | + | chr6.3:57515907-57515926 | MS.gene96615:intron | 30.0% |
| AAAAAATGAGCAGGTGATGA+TGG | + | chr6.3:57517208-57517227 | MS.gene96615:intron | 35.0% | |
| AAAGTTCAAAACCTCTTCAC+CGG | - | chr6.3:57517342-57517361 | None:intergenic | 35.0% | |
| AAATCTAGAAAACGGTGAAG+AGG | + | chr6.3:57517947-57517966 | MS.gene96615:CDS | 35.0% | |
| AAATTTCTCCCTTCAAATCG+GGG | + | chr6.3:57516988-57517007 | MS.gene96615:intron | 35.0% | |
| AAGCAAAACAAACATTGAGG+TGG | - | chr6.3:57517149-57517168 | None:intergenic | 35.0% | |
| AGTTGAGAGATTTGAAAGCA+AGG | + | chr6.3:57516591-57516610 | MS.gene96615:CDS | 35.0% | |
| CAAATTTCTCCCTTCAAATC+GGG | + | chr6.3:57516987-57517006 | MS.gene96615:intron | 35.0% | |
| CAATACGAAAAGCAACAAAG+CGG | - | chr6.3:57515906-57515925 | None:intergenic | 35.0% | |
| CTAAGAAGAGCAAAATCAGA+AGG | - | chr6.3:57517615-57517634 | None:intergenic | 35.0% | |
| CTTTGAATCCGCAATTGAAA+TGG | + | chr6.3:57515841-57515860 | MS.gene96615:intron | 35.0% | |
| GAAAAACCTCAGCAGTTATT+TGG | + | chr6.3:57515566-57515585 | MS.gene96615:intron | 35.0% | |
| GAAACGAATATCTGAGCAAA+GGG | + | chr6.3:57516388-57516407 | MS.gene96615:CDS | 35.0% | |
| GAAGCATACAAAAGTCATAG+AGG | + | chr6.3:57516633-57516652 | MS.gene96615:CDS | 35.0% | |
| GAGAGAGGTGAAATTATTGT+TGG | + | chr6.3:57515288-57515307 | MS.gene96615:intron | 35.0% | |
| GGTGGTAGATTTCAATGTTA+TGG | + | chr6.3:57517057-57517076 | MS.gene96615:intron | 35.0% | |
| TGACATTGATGTACATTGCT+TGG | + | chr6.3:57518010-57518029 | MS.gene96615:CDS | 35.0% | |
| TGCATCAGTAACAGAATAGT+GGG | - | chr6.3:57517775-57517794 | None:intergenic | 35.0% | |
| TGTAGAAGGGATTAACATGA+GGG | + | chr6.3:57516948-57516967 | MS.gene96615:intron | 35.0% | |
| ! | GATTTTATGGGGCTTAAAGA+AGG | + | chr6.3:57515863-57515882 | MS.gene96615:intron | 35.0% |
| !! | ACTATGGCATCGATTGATTA+TGG | + | chr6.3:57516670-57516689 | MS.gene96615:CDS | 35.0% |
| AACTGCAGTGTTAGTGTGTT+TGG | + | chr6.3:57517697-57517716 | MS.gene96615:intron | 40.0% | |
| AAGTTCAAAACCTCTTCACC+GGG | - | chr6.3:57517341-57517360 | None:intergenic | 40.0% | |
| ACTGCAGTGTTAGTGTGTTT+GGG | + | chr6.3:57517698-57517717 | MS.gene96615:intron | 40.0% | |
| ATCCAATTGTGTTGTGTCTC+AGG | - | chr6.3:57515443-57515462 | None:intergenic | 40.0% | |
| ATTGATGTACATTGCTTGGC+AGG | + | chr6.3:57518014-57518033 | MS.gene96615:CDS | 40.0% | |
| ATTTCTACATAGCCCGTCAT+AGG | + | chr6.3:57516054-57516073 | MS.gene96615:intron | 40.0% | |
| CAACGTCCAACATATCTTCT+CGG | - | chr6.3:57516759-57516778 | None:intergenic | 40.0% | |
| CACTATTCTGTTACTGATGC+AGG | + | chr6.3:57517774-57517793 | MS.gene96615:intron | 40.0% | |
| CGAAACGAATATCTGAGCAA+AGG | + | chr6.3:57516387-57516406 | MS.gene96615:CDS | 40.0% | |
| CTGCATCAGTAACAGAATAG+TGG | - | chr6.3:57517776-57517795 | None:intergenic | 40.0% | |
| CTTTCTGATGCAAATGTTCC+CGG | + | chr6.3:57517320-57517339 | MS.gene96615:CDS | 40.0% | |
| GAAATCTACCACCAATAAGG+AGG | - | chr6.3:57517050-57517069 | None:intergenic | 40.0% | |
| GAGATTTGAAAGCAAGGTGA+AGG | + | chr6.3:57516597-57516616 | MS.gene96615:CDS | 40.0% | |
| GATCAACCAAATAACTGCTG+AGG | - | chr6.3:57515575-57515594 | None:intergenic | 40.0% | |
| GCATCAGTAACAGAATAGTG+GGG | - | chr6.3:57517774-57517793 | None:intergenic | 40.0% | |
| GGAAACAAGTATCTCTACCT+TGG | + | chr6.3:57516014-57516033 | MS.gene96615:CDS | 40.0% | |
| GGAAGAGCAAAAAAATGAGC+AGG | + | chr6.3:57517199-57517218 | MS.gene96615:intron | 40.0% | |
| GGAATCTTACTGTTTGGGTA+CGG | + | chr6.3:57515683-57515702 | MS.gene96615:intron | 40.0% | |
| GGCTTCAAGACATAAGACTA+TGG | + | chr6.3:57516654-57516673 | MS.gene96615:CDS | 40.0% | |
| GTCGATGAAGTCACTACTAA+CGG | + | chr6.3:57516449-57516468 | MS.gene96615:CDS | 40.0% | |
| GTGTAGAAGGGATTAACATG+AGG | + | chr6.3:57516947-57516966 | MS.gene96615:intron | 40.0% | |
| TGGCAGGCTTAATTAAAGCA+TGG | + | chr6.3:57518030-57518049 | MS.gene96615:CDS | 40.0% | |
| TTCCTGAGACACAACACAAT+TGG | + | chr6.3:57515438-57515457 | MS.gene96615:intron | 40.0% | |
| TTGAGGGAGCAATTGAATAG+TGG | + | chr6.3:57517975-57517994 | MS.gene96615:CDS | 40.0% | |
| TTGCATTCAAGAACTTCCTC+AGG | - | chr6.3:57518095-57518114 | None:intergenic | 40.0% | |
| TTTCTACATAGCCCGTCATA+GGG | + | chr6.3:57516055-57516074 | MS.gene96615:intron | 40.0% | |
| TTTGAGCCGAGAAGATATGT+TGG | + | chr6.3:57516750-57516769 | MS.gene96615:CDS | 40.0% | |
| TTTGCTTTCCTCCTTATTGG+TGG | + | chr6.3:57517039-57517058 | MS.gene96615:intron | 40.0% | |
| ! | AGTTTGGGGTCCAAAAGTTA+TGG | + | chr6.3:57516527-57516546 | MS.gene96615:intron | 40.0% |
| ! | ATCTTAGGTGCATTTTCCTC+TGG | + | chr6.3:57515662-57515681 | MS.gene96615:intron | 40.0% |
| ! | ATGATTTGTAGCCCTATGAC+GGG | - | chr6.3:57516069-57516088 | None:intergenic | 40.0% |
| ! | CATGATTTGTAGCCCTATGA+CGG | - | chr6.3:57516070-57516089 | None:intergenic | 40.0% |
| ! | GCTTTTCGTATTGTTGGAGA+TGG | + | chr6.3:57515913-57515932 | MS.gene96615:intron | 40.0% |
| !! | CCTCTGGAATCTTACTGTTT+GGG | + | chr6.3:57515678-57515697 | MS.gene96615:intron | 40.0% |
| !! | TCAACTTACTGTTGGTTCCA+AGG | - | chr6.3:57516034-57516053 | None:intergenic | 40.0% |
| !! | TCCTCTGGAATCTTACTGTT+TGG | + | chr6.3:57515677-57515696 | MS.gene96615:intron | 40.0% |
| !!! | TTTTTTCCTTCAACCTGTGC+AGG | + | chr6.3:57516331-57516350 | MS.gene96615:intron | 40.0% |
| ACGGTGAAGAGGAACATTTG+AGG | + | chr6.3:57517958-57517977 | MS.gene96615:CDS | 45.0% | |
| AGGAGAGGTTATACTCACAG+GGG | + | chr6.3:57517794-57517813 | MS.gene96615:intron | 45.0% | |
| AGTCCATCTAACACTCCTGA+AGG | - | chr6.3:57518068-57518087 | None:intergenic | 45.0% | |
| CAGGAGAGGTTATACTCACA+GGG | + | chr6.3:57517793-57517812 | MS.gene96615:intron | 45.0% | |
| CCCAAACAGTAAGATTCCAG+AGG | - | chr6.3:57515681-57515700 | None:intergenic | 45.0% | |
| CGGTGAAGAGGAACATTTGA+GGG | + | chr6.3:57517959-57517978 | MS.gene96615:CDS | 45.0% | |
| CTGCAGTGTTAGTGTGTTTG+GGG | + | chr6.3:57517699-57517718 | MS.gene96615:intron | 45.0% | |
| GACAGAAGCTGAGATATAGC+AGG | - | chr6.3:57516432-57516451 | None:intergenic | 45.0% | |
| TAAAAGGCAGAGACTGCACA+AGG | + | chr6.3:57516897-57516916 | MS.gene96615:CDS | 45.0% | |
| TCTGAGCAAAGGGATCAGTT+TGG | + | chr6.3:57516398-57516417 | MS.gene96615:CDS | 45.0% | |
| TGGTTTAGGGAACTTCCTTC+AGG | + | chr6.3:57518050-57518069 | MS.gene96615:CDS | 45.0% | |
| TTCTGTTACTGATGCAGGAG+AGG | + | chr6.3:57517779-57517798 | MS.gene96615:intron | 45.0% | |
| ! | AGTCGGCTTCCTTAATGGAT+AGG | - | chr6.3:57515631-57515650 | None:intergenic | 45.0% |
| ! | GCTTGAATGGTTCTACTGCT+AGG | + | chr6.3:57516842-57516861 | MS.gene96615:CDS | 45.0% |
| ! | GTTAGATGGACTTTCACCTG+AGG | + | chr6.3:57518076-57518095 | MS.gene96615:CDS | 45.0% |
| ! | TGTTAGTGTGTTTGGGGTCT+CGG | + | chr6.3:57517705-57517724 | MS.gene96615:intron | 45.0% |
| ! | TTTCGAGTCGGCTTCCTTAA+TGG | - | chr6.3:57515636-57515655 | None:intergenic | 45.0% |
| !! | ATGAGCAGGTGATGATGGAA+AGG | + | chr6.3:57517213-57517232 | MS.gene96615:intron | 45.0% |
| !! | CTTCCTTCAGGAGTGTTAGA+TGG | + | chr6.3:57518062-57518081 | MS.gene96615:CDS | 45.0% |
| !! | TGAGCAGGTGATGATGGAAA+GGG | + | chr6.3:57517214-57517233 | MS.gene96615:intron | 45.0% |
| ACAACGGTAGATGGGAAGCA+CGG | + | chr6.3:57515976-57515995 | MS.gene96615:CDS | 50.0% | |
| AGAGGTTATACTCACAGGGG+AGG | + | chr6.3:57517797-57517816 | MS.gene96615:intron | 50.0% | |
| ATGAACCTCAGCTGTGGTAC+TGG | - | chr6.3:57516818-57516837 | None:intergenic | 50.0% | |
| CTCAATCAGACCCAGAGCAA+GGG | - | chr6.3:57516477-57516496 | None:intergenic | 50.0% | |
| GAGGTTCATCCACGCTTGAA+TGG | + | chr6.3:57516829-57516848 | MS.gene96615:CDS | 50.0% | |
| GCAGGAGAGGTTATACTCAC+AGG | + | chr6.3:57517792-57517811 | MS.gene96615:intron | 50.0% | |
| GCAGTAGAACCATTCAAGCG+TGG | - | chr6.3:57516841-57516860 | None:intergenic | 50.0% | |
| GCTAAGTCTTTGACCTGCAC+AGG | - | chr6.3:57516347-57516366 | None:intergenic | 50.0% | |
| GTATACAGAGGCGAAGAGAC+AGG | + | chr6.3:57517525-57517544 | MS.gene96615:intron | 50.0% | |
| TACTCACAGGGGAGGACTAA+AGG | + | chr6.3:57517805-57517824 | MS.gene96615:intron | 50.0% | |
| TGCAAATGTTCCCGGTGAAG+AGG | + | chr6.3:57517328-57517347 | MS.gene96615:CDS | 50.0% | |
| ! | ATGGGAAGCACGGATCAGAA+GGG | + | chr6.3:57515986-57516005 | MS.gene96615:CDS | 50.0% |
| ! | CAGTTCAGCCCCGATTTGAA+GGG | - | chr6.3:57516999-57517018 | None:intergenic | 50.0% |
| ! | CTTTGACCTGCACAGGTTGA+AGG | - | chr6.3:57516340-57516359 | None:intergenic | 50.0% |
| ! | GCACGGATCAGAAGGGTTTT+TGG | + | chr6.3:57515993-57516012 | MS.gene96615:CDS | 50.0% |
| ! | TCAGTTCAGCCCCGATTTGA+AGG | - | chr6.3:57517000-57517019 | None:intergenic | 50.0% |
| CTTCCCATCTACCGTTGTGG+TGG | - | chr6.3:57515974-57515993 | None:intergenic | 55.0% | |
| GCACCACCACAACGGTAGAT+GGG | + | chr6.3:57515968-57515987 | MS.gene96615:CDS | 55.0% | |
| GCTCAATCAGACCCAGAGCA+AGG | - | chr6.3:57516478-57516497 | None:intergenic | 55.0% | |
| GTGCTTCCCATCTACCGTTG+TGG | - | chr6.3:57515977-57515996 | None:intergenic | 55.0% | |
| TGTTGCAGGCACCACCACAA+CGG | + | chr6.3:57515960-57515979 | MS.gene96615:intron | 55.0% | |
| ! | AACCTCAGCTGTGGTACTGG+AGG | - | chr6.3:57516815-57516834 | None:intergenic | 55.0% |
| ! | GATGGGAAGCACGGATCAGA+AGG | + | chr6.3:57515985-57516004 | MS.gene96615:CDS | 55.0% |
| ! | TGCTCTGGGTCTGATTGAGC+AGG | + | chr6.3:57516478-57516497 | MS.gene96615:CDS | 55.0% |
| ACTAACGGCGCCCTTGCTCT+GGG | + | chr6.3:57516464-57516483 | MS.gene96615:CDS | 60.0% | |
| CTCCTCCAGTACCACAGCTG+AGG | + | chr6.3:57516810-57516829 | MS.gene96615:CDS | 60.0% | |
| GCGTGGATGAACCTCAGCTG+TGG | - | chr6.3:57516824-57516843 | None:intergenic | 60.0% | |
| GGCACCACCACAACGGTAGA+TGG | + | chr6.3:57515967-57515986 | MS.gene96615:intron | 60.0% | |
| TACTAACGGCGCCCTTGCTC+TGG | + | chr6.3:57516463-57516482 | MS.gene96615:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 57515261 | 57518136 | 57515261 | ID=MS.gene96615 |
| chr6.3 | mRNA | 57515261 | 57518136 | 57515261 | ID=MS.gene96615.t1;Parent=MS.gene96615 |
| chr6.3 | exon | 57515261 | 57515294 | 57515261 | ID=MS.gene96615.t1.exon1;Parent=MS.gene96615.t1 |
| chr6.3 | CDS | 57515261 | 57515294 | 57515261 | ID=cds.MS.gene96615.t1;Parent=MS.gene96615.t1 |
| chr6.3 | exon | 57515968 | 57516044 | 57515968 | ID=MS.gene96615.t1.exon2;Parent=MS.gene96615.t1 |
| chr6.3 | CDS | 57515968 | 57516044 | 57515968 | ID=cds.MS.gene96615.t1;Parent=MS.gene96615.t1 |
| chr6.3 | exon | 57516353 | 57516499 | 57516353 | ID=MS.gene96615.t1.exon3;Parent=MS.gene96615.t1 |
| chr6.3 | CDS | 57516353 | 57516499 | 57516353 | ID=cds.MS.gene96615.t1;Parent=MS.gene96615.t1 |
| chr6.3 | exon | 57516580 | 57516918 | 57516580 | ID=MS.gene96615.t1.exon4;Parent=MS.gene96615.t1 |
| chr6.3 | CDS | 57516580 | 57516918 | 57516580 | ID=cds.MS.gene96615.t1;Parent=MS.gene96615.t1 |
| chr6.3 | exon | 57517314 | 57517349 | 57517314 | ID=MS.gene96615.t1.exon5;Parent=MS.gene96615.t1 |
| chr6.3 | CDS | 57517314 | 57517349 | 57517314 | ID=cds.MS.gene96615.t1;Parent=MS.gene96615.t1 |
| chr6.3 | exon | 57517533 | 57517598 | 57517533 | ID=MS.gene96615.t1.exon6;Parent=MS.gene96615.t1 |
| chr6.3 | CDS | 57517533 | 57517598 | 57517533 | ID=cds.MS.gene96615.t1;Parent=MS.gene96615.t1 |
| chr6.3 | exon | 57517927 | 57518136 | 57517927 | ID=MS.gene96615.t1.exon7;Parent=MS.gene96615.t1 |
| chr6.3 | CDS | 57517927 | 57518136 | 57517927 | ID=cds.MS.gene96615.t1;Parent=MS.gene96615.t1 |
| Gene Sequence |
| Protein sequence |
