AlfalfaGEDB | MS.gene96662

M. sativa cultivar XinJiangDaYe / MS.gene96662

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96662.t1	AES97588.1	93	158	11	0	1	158	1	158	3.00E-80	307.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96662.t1	G7K1J4	93.0	158	11	0	1	158	1	158	2.2e-80	307.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene96662.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96662.t1	MTR_5g056450	93.038	158	11	0	1	158	1	158	4.78e-98	279
MS.gene96662.t1	MTR_1g041455	58.046	174	50	5	1	158	1	167	1.68e-58	179
MS.gene96662.t1	MTR_1g048880	47.953	171	58	7	1	158	1	153	3.68e-34	117
MS.gene96662.t1	MTR_1g075780	35.032	157	78	6	11	158	4	145	6.06e-14	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 34 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTGCCATCATGTGG+TGG	0.685328	5.3:-45410183	None:intergenic
AAAGGGTTTCTGCTTGGCTG+AGG	0.532206	5.3:-45410231	None:intergenic
AAATCCAATGGATTAACATC+TGG	0.363954	5.3:-45410423	None:intergenic
AACCAAAACCAACGGTTATT+CGG	0.300666	5.3:+45410208	MS.gene96662:CDS
AACTCACATCGAGTCTCACA+TGG	0.586787	5.3:+45410080	MS.gene96662:CDS
AATCAGAAAGCTTTATTCAA+CGG	0.559288	5.3:+45410119	MS.gene96662:CDS
AATCCAATGGATTAACATCT+GGG	0.500492	5.3:-45410422	None:intergenic
ACGGAGCGTATCAACCCTAA+AGG	0.578711	5.3:+45410138	MS.gene96662:CDS
AGCTTAAGTGATAAATCCAA+TGG	0.575565	5.3:-45410435	None:intergenic
ATCTTCAAATGATGGTACTA+AGG	0.506473	5.3:+45410326	MS.gene96662:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCTTAAGTGATAAATCCAA+TGG	-	chr5.3:45410438-45410457	None:intergenic	30.0%
ATCTTCAAATGATGGTACTA+AGG	+	chr5.3:45410326-45410345	MS.gene96662:CDS	30.0%
CTGGTGAGTTTAGTAATATT+AGG	+	chr5.3:45409989-45410008	MS.gene96662:CDS	30.0%
TGAATAAAGCTTTCTGATTG+TGG	-	chr5.3:45410118-45410137	None:intergenic	30.0%
TTTGAGTGTTTGTGAAAAAG+CGG	-	chr5.3:45410053-45410072	None:intergenic	30.0%
AACCAAAACCAACGGTTATT+CGG	+	chr5.3:45410208-45410227	MS.gene96662:CDS	35.0%
ATGATGTGTCAAACTTGGTA+GGG	+	chr5.3:45410013-45410032	MS.gene96662:CDS	35.0%
CATTTGAAGATTCTCCTTCT+AGG	-	chr5.3:45410317-45410336	None:intergenic	35.0%
GAAGGAGAATCTTCAAATGA+TGG	+	chr5.3:45410318-45410337	MS.gene96662:CDS	35.0%
TAACCCAGATGTTAATCCAT+TGG	+	chr5.3:45410419-45410438	MS.gene96662:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	45409985	45410461	45409985	ID=MS.gene96662
chr5.3	mRNA	45409985	45410461	45409985	ID=MS.gene96662.t1;Parent=MS.gene96662
chr5.3	exon	45409985	45410461	45409985	ID=MS.gene96662.t1.exon1;Parent=MS.gene96662.t1
chr5.3	CDS	45409985	45410461	45409985	ID=cds.MS.gene96662.t1;Parent=MS.gene96662.t1

Gene Sequence

>MS.gene96662

ATGGCTGGTGAGTTTAGTAATATTAGGCATGATGTGTCAAACTTGGTAGGGTGTAAATATTGCAACCGCTTTTTCACAAACACTCAAACACTCGTAACTCACATCGAGTCTCACATGGAGTACGAAGAGGCCACAATCAGAAAGCTTTATTCAACGGAGCGTATCAACCCTAAAGGACAATTTCCTCCTCAATGTTTGCCACCACATGATGGCAAGATTTTTCAACCAAAACCAACGGTTATTCGGCCTCAGCCAAGCAGAAACCCTTTTTTCGGCCATGTTGGTTATCGGCAAATGCAACTTCCACCAAATGCTTACCAATCGAAGCACCTAGAAGGAGAATCTTCAAATGATGGTACTAAGGCATATATCAAGCAACTTGAGAAACCTATCAAGAAAATTGATTTCATTGATTTGGTTAATAATGATGATGATAACCCAGATGTTAATCCATTGGATTTATCACTTAAGCTCTAG

Protein sequence

>MS.gene96662.t1

MAGEFSNIRHDVSNLVGCKYCNRFFTNTQTLVTHIESHMEYEEATIRKLYSTERINPKGQFPPQCLPPHDGKIFQPKPTVIRPQPSRNPFFGHVGYRQMQLPPNAYQSKHLEGESSNDGTKAYIKQLEKPIKKIDFIDLVNNDDDNPDVNPLDLSLKL