AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96687

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96687.t1 MTR_1g106470 70.261 306 58 3 1 293 1 286 5.74e-142 401
MS.gene96687.t1 MTR_1g106470 64.591 257 58 3 1 244 1 237 1.13e-102 300
MS.gene96687.t1 MTR_5g005110 46.884 337 119 14 1 297 1 317 1.41e-72 226
MS.gene96687.t1 MTR_1g106480 69.412 170 8 3 154 293 1 156 1.12e-68 211
MS.gene96687.t1 MTR_1g106460 40.774 336 151 9 1 295 1 329 1.49e-62 201
MS.gene96687.t1 MTR_3g103030 51.724 174 77 3 119 287 142 313 1.86e-48 164
MS.gene96687.t1 MTR_1g106490 70.192 104 27 1 23 122 24 127 7.35e-43 144
MS.gene96687.t1 MTR_5g005110 40.714 280 111 12 1 242 1 263 2.50e-38 136
MS.gene96687.t1 MTR_1g018090 81.818 77 14 0 202 278 273 349 2.72e-38 139
MS.gene96687.t1 MTR_1g106460 32.979 282 142 8 1 241 1 276 7.50e-29 112
MS.gene96687.t1 MTR_5g079500 52.809 89 41 1 183 271 199 286 2.25e-24 100
MS.gene96687.t1 MTR_8g093500 55.072 69 31 0 199 267 110 178 7.33e-18 82.0
MS.gene96687.t1 MTR_4g131160 56.716 67 29 0 200 266 193 259 3.05e-17 81.6
MS.gene96687.t1 MTR_4g131160 56.716 67 29 0 200 266 196 262 3.22e-17 81.6
MS.gene96687.t1 MTR_3g101810 42.056 107 56 2 193 297 163 265 3.57e-17 80.1
MS.gene96687.t1 MTR_1g080890 53.425 73 34 0 194 266 184 256 1.16e-16 79.7
MS.gene96687.t1 MTR_7g069590 56.364 55 24 0 210 264 33 87 3.09e-15 72.0
MS.gene96687.t1 MTR_1g018090 72.727 44 12 0 202 245 273 316 6.57e-14 71.2
MS.gene96687.t1 MTR_1g084980 50.877 57 28 0 210 266 469 525 7.05e-14 72.4
MS.gene96687.t1 MTR_1g019240 38.824 85 50 1 196 280 80 162 9.09e-14 70.1
MS.gene96687.t1 MTR_3g449770 41.772 79 36 2 199 272 300 373 6.79e-13 68.9
MS.gene96687.t1 MTR_7g053410 45.455 88 45 2 182 266 294 381 1.70e-12 67.8
MS.gene96687.t1 MTR_7g053410 47.368 76 39 1 192 266 306 381 1.97e-12 67.8
MS.gene96687.t1 MTR_5g017040 39.706 68 41 0 212 279 114 181 4.04e-12 66.2
MS.gene96687.t1 MTR_8g012290 38.614 101 52 2 192 291 280 371 2.31e-11 64.3
MS.gene96687.t1 MTR_8g012290 38.614 101 52 2 192 291 280 371 2.44e-11 64.3
MS.gene96687.t1 MTR_7g099540 45.614 57 31 0 210 266 259 315 2.79e-11 64.3
MS.gene96687.t1 MTR_1g070870 47.423 97 48 2 173 266 90 186 3.58e-11 63.2
MS.gene96687.t1 MTR_1g069155 38.889 72 44 0 195 266 309 380 7.02e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96687.t1 AT2G14760 38.957 326 155 11 10 294 6 328 8.81e-50 168
MS.gene96687.t1 AT2G14760 37.463 339 155 12 10 294 6 341 4.74e-46 158
MS.gene96687.t1 AT4G33880 36.782 348 143 13 10 285 6 348 9.65e-45 155
MS.gene96687.t1 AT5G43175 71.134 97 28 0 189 285 118 214 2.85e-44 150
MS.gene96687.t1 AT1G27740 73.563 87 23 0 199 285 163 249 1.26e-41 144
MS.gene96687.t1 AT5G37800 50.000 98 44 2 174 271 177 269 6.42e-23 96.7
MS.gene96687.t1 AT1G66470 58.333 72 29 1 200 271 193 263 5.49e-22 94.0
MS.gene96687.t1 AT2G24260 51.852 81 39 0 197 277 29 109 1.75e-19 85.9
MS.gene96687.t1 AT2G24260 58.571 70 29 0 197 266 132 201 6.07e-19 86.3
MS.gene96687.t1 AT4G30980 57.143 70 30 0 197 266 124 193 1.20e-18 84.7
MS.gene96687.t1 AT4G30980 57.143 70 30 0 197 266 172 241 1.45e-18 85.1
MS.gene96687.t1 AT5G58010 44.898 98 52 1 171 266 65 162 2.57e-17 80.9
MS.gene96687.t1 AT3G21330 49.383 81 36 2 185 265 256 331 1.66e-16 79.3
MS.gene96687.t1 AT5G01305 51.613 62 30 0 201 262 35 96 7.54e-16 74.3
MS.gene96687.t1 AT4G00120 53.704 54 25 0 212 265 121 174 2.83e-15 73.2
MS.gene96687.t1 AT1G09530 43.939 66 37 0 210 275 344 409 2.65e-13 70.5
MS.gene96687.t1 AT1G09530 43.939 66 37 0 210 275 344 409 2.65e-13 70.5
MS.gene96687.t1 AT1G09530 43.939 66 37 0 210 275 344 409 2.65e-13 70.5
MS.gene96687.t1 AT1G09530 43.939 66 37 0 210 275 344 409 2.65e-13 70.5
MS.gene96687.t1 AT1G09530 43.939 66 37 0 210 275 344 409 2.65e-13 70.5
MS.gene96687.t1 AT1G09530 43.939 66 37 0 210 275 344 409 2.65e-13 70.5
MS.gene96687.t1 AT4G36930 37.838 74 46 0 210 283 198 271 1.29e-12 67.8
MS.gene96687.t1 AT5G50915 34.395 157 91 5 139 287 65 217 1.37e-12 67.0
MS.gene96687.t1 AT5G50915 34.395 157 91 5 139 287 65 217 1.37e-12 67.0
MS.gene96687.t1 AT5G50915 34.395 157 91 5 139 287 65 217 1.70e-12 66.6
MS.gene96687.t1 AT5G50915 34.395 157 91 5 139 287 65 217 1.70e-12 66.6
MS.gene96687.t1 AT3G23690 44.737 76 41 1 192 266 180 255 1.36e-11 64.7
MS.gene96687.t1 AT5G48560 46.053 76 40 1 192 266 290 365 1.86e-11 64.7
MS.gene96687.t1 AT2G20180 47.368 57 30 0 210 266 214 270 1.86e-11 64.7
MS.gene96687.t1 AT2G20180 47.368 57 30 0 210 266 214 270 1.86e-11 64.7
MS.gene96687.t1 AT2G20180 47.368 57 30 0 210 266 214 270 1.86e-11 64.7
MS.gene96687.t1 AT2G20180 47.368 57 30 0 210 266 285 341 1.95e-11 64.7
MS.gene96687.t1 AT2G20180 47.368 57 30 0 210 266 285 341 1.95e-11 64.7
MS.gene96687.t1 AT2G20180 47.368 57 30 0 210 266 285 341 1.95e-11 64.7
MS.gene96687.t1 AT2G20180 47.368 57 30 0 210 266 285 341 1.95e-11 64.7
MS.gene96687.t1 AT5G48560 46.053 76 40 1 192 266 290 365 2.03e-11 64.7
MS.gene96687.t1 AT4G00050 46.154 52 28 0 219 270 121 172 5.53e-11 62.8
MS.gene96687.t1 AT4G00050 46.154 52 28 0 219 270 223 274 9.57e-11 62.4

Find 63 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTTAGTCCACAATATT+TGG 0.147520 1.1:-76474588 MS.gene96687:CDS
CAAATATTGTGGACTAAATT+TGG 0.154244 1.1:+76474589 None:intergenic
TGGCTCATAGAACCAGATTT+TGG 0.215361 1.1:+76474191 None:intergenic
TTCTCTTCTCCAACTAAATT+AGG 0.240816 1.1:-76473300 MS.gene96687:CDS
GCTTACAATGGAATAAATAT+TGG 0.247349 1.1:-76473336 MS.gene96687:CDS
TGGAACCCATTCATGTGATT+TGG 0.268183 1.1:-76474657 MS.gene96687:CDS
CCCATTCTTCAGAAATCAAT+TGG 0.299308 1.1:+76474789 None:intergenic
CTACGCAACTTAGGTGCTTC+AGG 0.318498 1.1:+76474056 None:intergenic
CAGAAAATATAAGGAATGTT+AGG 0.319597 1.1:-76474220 MS.gene96687:CDS
CCCAATTGATTTCTGAAGAA+TGG 0.332468 1.1:-76474790 MS.gene96687:CDS
TGTAGGTTTCAGAAAATATA+AGG 0.339371 1.1:-76474229 MS.gene96687:intron
AAATCTACCTTAGTTCCATT+TGG 0.344620 1.1:+76473643 None:intergenic
TTTATTCCATTGTAAGCAAT+TGG 0.346999 1.1:+76473342 None:intergenic
GGAACCCATTCATGTGATTT+GGG 0.350013 1.1:-76474656 MS.gene96687:CDS
GACTTCATGGCTCAGTTCCT+TGG 0.360528 1.1:-76474731 MS.gene96687:CDS
ATTCATCTTCCTAATTTAGT+TGG 0.363312 1.1:+76473291 None:intergenic
CCAATTGATTTCTGAAGAAT+GGG 0.373736 1.1:-76474789 MS.gene96687:CDS
AATCTACCTTAGTTCCATTT+GGG 0.385383 1.1:+76473644 None:intergenic
GTTAGGAAATGTCCAAAATC+TGG 0.392760 1.1:-76474203 MS.gene96687:CDS
GAAGAATGGGATTCTCTTAG+TGG 0.394320 1.1:-76474776 MS.gene96687:CDS
TTGTTCCCAAATCACATGAA+TGG 0.399061 1.1:+76474651 None:intergenic
TCTTGTTGAAAACAATTTGC+GGG 0.406671 1.1:-76474504 MS.gene96687:CDS
AGCCGAGGAAGCTGACTTCA+TGG 0.435912 1.1:-76474744 MS.gene96687:CDS
TGTTCCCAAATCACATGAAT+GGG 0.437898 1.1:+76474652 None:intergenic
TGTTGGAGCCATGCCACGTT+AGG 0.453646 1.1:+76474156 None:intergenic
TTGCAAACTCTTGTCCCAAA+TGG 0.455826 1.1:-76473658 MS.gene96687:CDS
ACTAAATTTGGCATCTTCCA+TGG 0.457758 1.1:+76474601 None:intergenic
TCTTGTCCCAAATGGAACTA+AGG 0.473754 1.1:-76473650 MS.gene96687:intron
GAATGGGTTCCATTACTTGA+AGG 0.488758 1.1:+76474668 None:intergenic
TATGAATGCATTAATCATGA+AGG 0.497393 1.1:-76474539 MS.gene96687:CDS
ATGCTTTGTGCATCAGTGGC+AGG 0.503605 1.1:+76474011 None:intergenic
GCTCAGTTCCTTGGTTGTAG+TGG 0.503788 1.1:-76474722 MS.gene96687:CDS
TTCTTGTTGAAAACAATTTG+CGG 0.503995 1.1:-76474505 MS.gene96687:CDS
TGCATTAATCATGAAGGGCC+GGG 0.507871 1.1:-76474533 MS.gene96687:CDS
AACCTGTGGAAAACAGTTGT+TGG 0.508340 1.1:+76474139 None:intergenic
GAAGAGAAAGAATAAATGAA+AGG 0.522466 1.1:-76473690 MS.gene96687:CDS
ATGCATTAATCATGAAGGGC+CGG 0.525603 1.1:-76474534 MS.gene96687:CDS
CCATTCTTCAGAAATCAATT+GGG 0.537373 1.1:+76474790 None:intergenic
TTACTTGAAGGAAAATAAGA+TGG 0.542752 1.1:+76474680 None:intergenic
AGCCATGAAGTCAGCTTCCT+CGG 0.543459 1.1:+76474742 None:intergenic
AAGTTATGATCCAAATATTG+TGG 0.544900 1.1:+76474578 None:intergenic
ATGAATGCATTAATCATGAA+GGG 0.569600 1.1:-76474538 MS.gene96687:CDS
TGAAGGAAAATAAGATGGCA+TGG 0.574425 1.1:+76474685 None:intergenic
AAACAATTTGCGGGATGAGA+GGG 0.575684 1.1:-76474495 MS.gene96687:CDS
GAAGAGGGCCTAACGTGGCA+TGG 0.579675 1.1:-76474164 MS.gene96687:CDS
AAAACAATTTGCGGGATGAG+AGG 0.581008 1.1:-76474496 MS.gene96687:CDS
AGAAAATCGAAGGCAGGAAG+TGG 0.581938 1.1:-76474035 MS.gene96687:CDS
ACGTTAGGCCCTCTTCATTG+TGG 0.582294 1.1:+76474171 None:intergenic
TTGCGTAGAAAATCGAAGGC+AGG 0.583966 1.1:-76474041 MS.gene96687:CDS
TAGTGTTTCCACTACAACCA+AGG 0.593389 1.1:+76474714 None:intergenic
AATGATGATGACTTCAGAAG+AGG 0.597972 1.1:-76474465 MS.gene96687:CDS
TCTATGAGCCACAATGAAGA+GGG 0.604923 1.1:-76474179 MS.gene96687:CDS
TATGCTCCAATTGCTTACAA+TGG 0.606083 1.1:-76473348 MS.gene96687:CDS
GGATATTAGTACCATGCTTG+AGG 0.607564 1.1:-76473531 MS.gene96687:CDS
TTCTATGAGCCACAATGAAG+AGG 0.608991 1.1:-76474180 MS.gene96687:CDS
TAGTTGGAGAAGAGAAGCTG+AGG 0.609048 1.1:+76473307 None:intergenic
TTGGACAGCTTCCTCAAGCA+TGG 0.619471 1.1:+76473520 None:intergenic
TAAGTTGCGTAGAAAATCGA+AGG 0.620676 1.1:-76474045 MS.gene96687:CDS
AAGATTTAGAAGCTCACTAG+AGG 0.625436 1.1:-76474411 MS.gene96687:intron
ATAAATGCTTTGTGCATCAG+TGG 0.654510 1.1:+76474007 None:intergenic
AAAGGATTAGAGTTAACCTG+TGG 0.678724 1.1:+76474125 None:intergenic
ACAATGAAGAGGGCCTAACG+TGG 0.686185 1.1:-76474169 MS.gene96687:CDS
TAGTGGACAGTACACAGCCG+AGG 0.694851 1.1:-76474759 MS.gene96687:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTCATTGTTTATTTATTTAT+TGG - chr1.1:76474684-76474703 MS.gene96687:CDS 15.0%
!! ATTGAACTATTACTCAATAA+TGG - chr1.1:76474488-76474507 MS.gene96687:CDS 20.0%
!! GCATAAAAGAAATTGAAAAA+TGG + chr1.1:76474648-76474667 None:intergenic 20.0%
!! TTGAACTATTACTCAATAAT+GGG - chr1.1:76474489-76474508 MS.gene96687:CDS 20.0%
!!! TAAGTGCATATTTAGAATTA+CGG + chr1.1:76474259-76474278 None:intergenic 20.0%
!!! TAATCATGATTTTACTATGT+AGG - chr1.1:76473847-76473866 MS.gene96687:intron 20.0%
!!! TAGAGGTATAATAATAGTTA+AGG - chr1.1:76473699-76473718 MS.gene96687:intron 20.0%
!!! TTTTTTTGTTTGTGAATTGT+AGG - chr1.1:76474538-76474557 MS.gene96687:CDS 20.0%
! AAGTTATGATCCAAATATTG+TGG + chr1.1:76473518-76473537 None:intergenic 25.0%
! ACATTTCTTTAGTGCATATT+TGG - chr1.1:76474133-76474152 MS.gene96687:CDS 25.0%
! ATGAATGCATTAATCATGAA+GGG - chr1.1:76473555-76473574 MS.gene96687:intron 25.0%
! CAAATTTAGTCCACAATATT+TGG - chr1.1:76473505-76473524 MS.gene96687:CDS 25.0%
! CAGAAAATATAAGGAATGTT+AGG - chr1.1:76473873-76473892 MS.gene96687:intron 25.0%
! GAAGAGAAAGAATAAATGAA+AGG - chr1.1:76474403-76474422 MS.gene96687:intron 25.0%
! GCTTACAATGGAATAAATAT+TGG - chr1.1:76474757-76474776 MS.gene96687:CDS 25.0%
! TATGAATGCATTAATCATGA+AGG - chr1.1:76473554-76473573 MS.gene96687:intron 25.0%
! TGTAGGTTTCAGAAAATATA+AGG - chr1.1:76473864-76473883 MS.gene96687:intron 25.0%
! TTACTTGAAGGAAAATAAGA+TGG + chr1.1:76473416-76473435 None:intergenic 25.0%
! TTCTTGTTGAAAACAATTTG+CGG - chr1.1:76473588-76473607 MS.gene96687:intron 25.0%
! TTTATTCCATTGTAAGCAAT+TGG + chr1.1:76474754-76474773 None:intergenic 25.0%
!! ACAATATGTTACCATGATTT+TGG - chr1.1:76474179-76474198 MS.gene96687:CDS 25.0%
!! CAAATATTGTGGACTAAATT+TGG + chr1.1:76473507-76473526 None:intergenic 25.0%
!! GCATTCATAGTTTATCTTTT+TGG + chr1.1:76473543-76473562 None:intergenic 25.0%
!!! TCTTATTTTCCTTCAAGTAA+TGG - chr1.1:76473416-76473435 MS.gene96687:intron 25.0%
AAATCTACCTTAGTTCCATT+TGG + chr1.1:76474453-76474472 None:intergenic 30.0%
AATCTACCTTAGTTCCATTT+GGG + chr1.1:76474452-76474471 None:intergenic 30.0%
ACAGTAGTCAGTAGTTTAAT+TGG + chr1.1:76474310-76474329 None:intergenic 30.0%
ACTAAAGAAATGTCCTTCAA+AGG + chr1.1:76474126-76474145 None:intergenic 30.0%
AGAGGATAAAAGCAAAAACT+TGG - chr1.1:76473646-76473665 MS.gene96687:intron 30.0%
AGTTAAACGTCTCTCATTAT+AGG - chr1.1:76474353-76474372 MS.gene96687:intron 30.0%
ATCTTCCATGGAAAAAAACA+TGG + chr1.1:76473483-76473502 None:intergenic 30.0%
CCATTCTTCAGAAATCAATT+GGG + chr1.1:76473306-76473325 None:intergenic 30.0%
CTAAAGAAATGTCCTTCAAA+GGG + chr1.1:76474125-76474144 None:intergenic 30.0%
GAACTAAGGTAGATTTCTTA+AGG - chr1.1:76474457-76474476 MS.gene96687:CDS 30.0%
GAGGATAAAAGCAAAAACTT+GGG - chr1.1:76473647-76473666 MS.gene96687:intron 30.0%
TCTTGTTGAAAACAATTTGC+GGG - chr1.1:76473589-76473608 MS.gene96687:intron 30.0%
TTCTCTTCTCCAACTAAATT+AGG - chr1.1:76474793-76474812 MS.gene96687:CDS 30.0%
! AGCTTCTAAATCTTTTTGCA+GGG + chr1.1:76473676-76473695 None:intergenic 30.0%
! CCAATTGATTTCTGAAGAAT+GGG - chr1.1:76473304-76473323 MS.gene96687:CDS 30.0%
! CGTAACTTTTACCAAAATCA+TGG + chr1.1:76474193-76474212 None:intergenic 30.0%
! GTTTTTGCAGCTTCAAATTA+AGG - chr1.1:76474604-76474623 MS.gene96687:CDS 30.0%
! TAAACTACTGACTACTGTAT+TGG - chr1.1:76474312-76474331 MS.gene96687:intron 30.0%
! TCTTTTAGGCTTAGAATTGA+AGG + chr1.1:76474016-76474035 None:intergenic 30.0%
! TTTTCAACAAGAACTAAACC+CGG + chr1.1:76473581-76473600 None:intergenic 30.0%
!! TACTCAATAATGGGTTAAGA+TGG - chr1.1:76474498-76474517 MS.gene96687:CDS 30.0%
!! TTTTGTTTGTGAATTGTAGG+TGG - chr1.1:76474541-76474560 MS.gene96687:CDS 30.0%
AAAGGATTAGAGTTAACCTG+TGG + chr1.1:76473971-76473990 None:intergenic 35.0%
AAGATTTAGAAGCTCACTAG+AGG - chr1.1:76473682-76473701 MS.gene96687:CDS 35.0%
ACTAAATTTGGCATCTTCCA+TGG + chr1.1:76473495-76473514 None:intergenic 35.0%
ATAAATGCTTTGTGCATCAG+TGG + chr1.1:76474089-76474108 None:intergenic 35.0%
CATGGAAAAAAACATGGACA+AGG + chr1.1:76473477-76473496 None:intergenic 35.0%
CCCATTCTTCAGAAATCAAT+TGG + chr1.1:76473307-76473326 None:intergenic 35.0%
GCTGCAAAAACTTCACATAT+TGG + chr1.1:76474595-76474614 None:intergenic 35.0%
GTGAATTTGATGAATCACGA+TGG + chr1.1:76474237-76474256 None:intergenic 35.0%
GTTAGGAAATGTCCAAAATC+TGG - chr1.1:76473890-76473909 MS.gene96687:intron 35.0%
TAAGTTGCGTAGAAAATCGA+AGG - chr1.1:76474048-76474067 MS.gene96687:CDS 35.0%
TATGCTCCAATTGCTTACAA+TGG - chr1.1:76474745-76474764 MS.gene96687:CDS 35.0%
TGAAGGAAAATAAGATGGCA+TGG + chr1.1:76473411-76473430 None:intergenic 35.0%
TGTTCCCAAATCACATGAAT+GGG + chr1.1:76473444-76473463 None:intergenic 35.0%
TTGTTCCCAAATCACATGAA+TGG + chr1.1:76473445-76473464 None:intergenic 35.0%
! AATGATGATGACTTCAGAAG+AGG - chr1.1:76473628-76473647 MS.gene96687:intron 35.0%
! CCCAATTGATTTCTGAAGAA+TGG - chr1.1:76473303-76473322 MS.gene96687:CDS 35.0%
! GAGCTTCTAAATCTTTTTGC+AGG + chr1.1:76473677-76473696 None:intergenic 35.0%
! GGTTAACTCTAATCCTTTTC+TGG - chr1.1:76473973-76473992 MS.gene96687:intron 35.0%
! TTCGATTTTCTACGCAACTT+AGG + chr1.1:76474049-76474068 None:intergenic 35.0%
!!! AATCCTTTTCTGGAGCAAAA+TGG - chr1.1:76473983-76474002 MS.gene96687:intron 35.0%
!!! CTTGTCCATGTTTTTTTCCA+TGG - chr1.1:76473475-76473494 MS.gene96687:intron 35.0%
!!! TTTTGAGCTCTGAAGATATG+TGG - chr1.1:76474719-76474738 MS.gene96687:CDS 35.0%
AAAACAATTTGCGGGATGAG+AGG - chr1.1:76473597-76473616 MS.gene96687:intron 40.0%
AAACAATTTGCGGGATGAGA+GGG - chr1.1:76473598-76473617 MS.gene96687:intron 40.0%
AACCTGTGGAAAACAGTTGT+TGG + chr1.1:76473957-76473976 None:intergenic 40.0%
ATGCATTAATCATGAAGGGC+CGG - chr1.1:76473559-76473578 MS.gene96687:intron 40.0%
CAAGAGTAAGTTCCCTTTGA+AGG - chr1.1:76474110-76474129 MS.gene96687:CDS 40.0%
GAAGAATGGGATTCTCTTAG+TGG - chr1.1:76473317-76473336 MS.gene96687:CDS 40.0%
GGAACCCATTCATGTGATTT+GGG - chr1.1:76473437-76473456 MS.gene96687:intron 40.0%
GGATATTAGTACCATGCTTG+AGG - chr1.1:76474562-76474581 MS.gene96687:CDS 40.0%
TAGTGTTTCCACTACAACCA+AGG + chr1.1:76473382-76473401 None:intergenic 40.0%
TCTATGAGCCACAATGAAGA+GGG - chr1.1:76473914-76473933 MS.gene96687:intron 40.0%
TCTTGTCCCAAATGGAACTA+AGG - chr1.1:76474443-76474462 MS.gene96687:CDS 40.0%
TGGAACCCATTCATGTGATT+TGG - chr1.1:76473436-76473455 MS.gene96687:intron 40.0%
TTCTATGAGCCACAATGAAG+AGG - chr1.1:76473913-76473932 MS.gene96687:intron 40.0%
TTGCAAACTCTTGTCCCAAA+TGG - chr1.1:76474435-76474454 MS.gene96687:CDS 40.0%
! GAATGGGTTCCATTACTTGA+AGG + chr1.1:76473428-76473447 None:intergenic 40.0%
! TGGCTCATAGAACCAGATTT+TGG + chr1.1:76473905-76473924 None:intergenic 40.0%
! TTTCCTCATGTTTTGTGCAG+AGG - chr1.1:76474379-76474398 MS.gene96687:intron 40.0%
!! TAGGTGCTTCAGGTTCTTTT+AGG + chr1.1:76474030-76474049 None:intergenic 40.0%
AGAAAATCGAAGGCAGGAAG+TGG - chr1.1:76474058-76474077 MS.gene96687:CDS 45.0%
TAGTTGGAGAAGAGAAGCTG+AGG + chr1.1:76474789-76474808 None:intergenic 45.0%
TCTCCTCTGCACAAAACATG+AGG + chr1.1:76474385-76474404 None:intergenic 45.0%
TGCATTAATCATGAAGGGCC+GGG - chr1.1:76473560-76473579 MS.gene96687:intron 45.0%
TTGCGTAGAAAATCGAAGGC+AGG - chr1.1:76474052-76474071 MS.gene96687:CDS 45.0%
! CCTCCATTTTGCTCCAGAAA+AGG + chr1.1:76473989-76474008 None:intergenic 45.0%
! CTCCAACAACTGTTTTCCAC+AGG - chr1.1:76473952-76473971 MS.gene96687:intron 45.0%
!!! CCTTTTCTGGAGCAAAATGG+AGG - chr1.1:76473986-76474005 MS.gene96687:intron 45.0%
ACAATGAAGAGGGCCTAACG+TGG - chr1.1:76473924-76473943 MS.gene96687:intron 50.0%
ACGTTAGGCCCTCTTCATTG+TGG + chr1.1:76473925-76473944 None:intergenic 50.0%
AGCCATGAAGTCAGCTTCCT+CGG + chr1.1:76473354-76473373 None:intergenic 50.0%
ATGCTTTGTGCATCAGTGGC+AGG + chr1.1:76474085-76474104 None:intergenic 50.0%
CTACGCAACTTAGGTGCTTC+AGG + chr1.1:76474040-76474059 None:intergenic 50.0%
GACTTCATGGCTCAGTTCCT+TGG - chr1.1:76473362-76473381 MS.gene96687:CDS 50.0%
GCTCAGTTCCTTGGTTGTAG+TGG - chr1.1:76473371-76473390 MS.gene96687:CDS 50.0%
TTGGACAGCTTCCTCAAGCA+TGG + chr1.1:76474576-76474595 None:intergenic 50.0%
TGTTGGAGCCATGCCACGTT+AGG + chr1.1:76473940-76473959 None:intergenic 55.0%
! AGCCGAGGAAGCTGACTTCA+TGG - chr1.1:76473349-76473368 MS.gene96687:CDS 55.0%
! TAGTGGACAGTACACAGCCG+AGG - chr1.1:76473334-76473353 MS.gene96687:CDS 55.0%
GAAGAGGGCCTAACGTGGCA+TGG - chr1.1:76473929-76473948 MS.gene96687:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 76473293 76474822 76473293 ID=MS.gene96687
chr1.1 mRNA 76473293 76474822 76473293 ID=MS.gene96687.t1;Parent=MS.gene96687
chr1.1 exon 76474412 76474822 76474412 ID=MS.gene96687.t1.exon1;Parent=MS.gene96687.t1
chr1.1 CDS 76474412 76474822 76474412 ID=cds.MS.gene96687.t1;Parent=MS.gene96687.t1
chr1.1 exon 76474001 76474246 76474001 ID=MS.gene96687.t1.exon2;Parent=MS.gene96687.t1
chr1.1 CDS 76474001 76474246 76474001 ID=cds.MS.gene96687.t1;Parent=MS.gene96687.t1
chr1.1 exon 76473651 76473716 76473651 ID=MS.gene96687.t1.exon3;Parent=MS.gene96687.t1
chr1.1 CDS 76473651 76473716 76473651 ID=cds.MS.gene96687.t1;Parent=MS.gene96687.t1
chr1.1 exon 76473490 76473555 76473490 ID=MS.gene96687.t1.exon4;Parent=MS.gene96687.t1
chr1.1 CDS 76473490 76473555 76473490 ID=cds.MS.gene96687.t1;Parent=MS.gene96687.t1
chr1.1 exon 76473293 76473397 76473293 ID=MS.gene96687.t1.exon5;Parent=MS.gene96687.t1
chr1.1 CDS 76473293 76473397 76473293 ID=cds.MS.gene96687.t1;Parent=MS.gene96687.t1
Gene Sequence

>MS.gene96687

ATGGAATCTGCCCAATTGATTTCTGAAGAATGGGATTCTCTTAGTGGACAGTACACAGCCGAGGAAGCTGACTTCATGGCTCAGTTCCTTGGTTGTAGTGGAAACACTAGTTTTGCCATGCCATCTTATTTTCCTTCAAGTAATGGAACCCATTCATGTGATTTGGGAACAAATATTGATTCCTTGTCCATGTTTTTTTCCATGGAAGATGCCAAATTTAGTCCACAATATTTGGATCATAACTTAACCAAAAAGATAAACTATGAATGCATTAATCATGAAGGGCCGGGTTTAGTTCTTGTTGAAAACAATTTGCGGGATGAGAGGGAGCATGAAATGATGATGACTTCAGAAGAGGATAAAAGCAAAAACTTGGGAAACCCTGCAAAAAGATTTAGAAGCTCACTAGAGGTATAATAATAGTTAAGGTATTTATTATTGACAAAAAATAGTTGATGTTAAATTAAACTTTGAAAACGACAAATAAATAAAAATAATTTTTTCTACAAAAAAGCAACAAGTTTAGAAGCTACTACGTTGATTGTTTGAGATTTTAATCATGATTTTACTATGTAGGTTTCAGAAAATATAAGGAATGTTAGGAAATGTCCAAAATCTGGTTCTATGAGCCACAATGAAGAGGGCCTAACGTGGCATGGCTCCAACAACTGTTTTCCACAGGTTAACTCTAATCCTTTTCTGGAGCAAAATGGAGGAAAACCTTCAATTCTAAGCCTAAAAGAACCTGAAGCACCTAAGTTGCGTAGAAAATCGAAGGCAGGAAGTGGTCCTGCCACTGATGCACAAAGCATTTATGCAAGAGTAAGTTCCCTTTGAAGGACATTTCTTTAGTGCATATTTGGATTCAAGTGAGTTATGCTGAATCACAATATGTTACCATGATTTTGGTAAAAGTTACGATTTAGATTTCAATCATCGTGCCATCGTGATTCATCAAATTCACCGTAATTCTAAATATGCACTTAATAAAATCATGATGAAGAATAGTACATGCCAATTAAACTACTGACTACTGTATTGGTAACATTTTCTTGCTTTTAGTTAAACGTCTCTCATTATAGGTTTTTTCCTCATGTTTTGTGCAGAGGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCTTGCAAACTCTTGTCCCAAATGGAACTAAGGTAGATTTCTTAAGGACAACAATATTGAACTATTACTCAATAATGGGTTAAGATGGTCAAATTCTCAAACTTTTTTTTTTGTTTGTGAATTGTAGGTGGATATTAGTACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAGCTTCAAATTAAGGTAACAATTTGAGAAACTTCCATTTTTCAATTTCTTTTATGCAAAACATAAATATTAACTCATTGTTTATTTATTTATTGGATATGAAACAGCTTTTGAGCTCTGAAGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATAAATATTGGATTAGACCTCAGCTTCTCTTCTCCAACTAAATTAGGAAGATGA
Protein sequence

>MS.gene96687.t1

MESAQLISEEWDSLSGQYTAEEADFMAQFLGCSGNTSFAMPSYFPSSNGTHSCDLGTNIDSLSMFFSMEDAKFSPQYLDHNLTKKINYECINHEGPGLVLVENNLRDEREHEMMMTSEEDKSKNLGNPAKRFRSSLEVSENIRNVRKCPKSGSMSHNEEGLTWHGSNNCFPQVNSNPFLEQNGGKPSILSLKEPEAPKLRRKSKAGSGPATDAQSIYARRRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSEDMWMYAPIAYNGINIGLDLSFSSPTKLGR