AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96688

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96688.t1 MTR_1g106470 78.947 304 35 4 1 292 1 287 3.90e-159 444
MS.gene96688.t1 MTR_1g106470 75.197 254 34 4 1 242 1 237 1.75e-120 345
MS.gene96688.t1 MTR_5g005110 46.246 333 116 9 1 290 1 313 1.79e-76 236
MS.gene96688.t1 MTR_1g106460 43.636 330 143 9 1 290 1 327 1.11e-62 201
MS.gene96688.t1 MTR_1g106480 63.030 165 23 3 158 292 1 157 6.54e-57 180
MS.gene96688.t1 MTR_3g103030 51.149 174 71 3 124 285 142 313 8.76e-48 162
MS.gene96688.t1 MTR_5g005110 40.000 285 104 9 1 240 1 263 3.68e-43 149
MS.gene96688.t1 MTR_1g018090 84.416 77 12 0 200 276 273 349 1.68e-39 142
MS.gene96688.t1 MTR_1g106490 59.821 112 30 4 23 127 24 127 5.35e-30 110
MS.gene96688.t1 MTR_1g106460 34.146 287 130 8 1 239 1 276 3.55e-29 112
MS.gene96688.t1 MTR_5g079500 49.451 91 45 1 179 269 197 286 1.24e-23 98.2
MS.gene96688.t1 MTR_8g093500 66.071 56 19 0 210 265 123 178 1.78e-18 83.6
MS.gene96688.t1 MTR_3g101810 62.963 54 20 0 210 263 180 233 1.15e-16 78.6
MS.gene96688.t1 MTR_4g131160 57.576 66 28 0 199 264 194 259 1.22e-16 79.7
MS.gene96688.t1 MTR_4g131160 57.576 66 28 0 199 264 197 262 1.27e-16 79.7
MS.gene96688.t1 MTR_7g069590 56.364 55 24 0 208 262 33 87 5.67e-16 73.9
MS.gene96688.t1 MTR_1g080890 52.055 73 35 0 192 264 184 256 1.48e-15 76.3
MS.gene96688.t1 MTR_1g018090 77.273 44 10 0 200 243 273 316 3.13e-15 75.1
MS.gene96688.t1 MTR_7g053410 43.299 97 45 2 178 264 285 381 4.67e-13 69.3
MS.gene96688.t1 MTR_4g033295 42.857 98 55 1 170 266 87 184 5.18e-13 66.6
MS.gene96688.t1 MTR_7g053410 43.299 97 45 2 178 264 285 381 5.22e-13 69.3
MS.gene96688.t1 MTR_4g033295 42.268 97 55 1 170 265 87 183 7.63e-13 66.2
MS.gene96688.t1 MTR_1g084980 47.368 57 30 0 208 264 469 525 1.64e-12 68.2
MS.gene96688.t1 MTR_1g019240 36.620 71 45 0 208 278 92 162 6.43e-12 64.7
MS.gene96688.t1 MTR_3g449770 40.278 72 38 1 199 270 307 373 2.65e-11 64.3
MS.gene96688.t1 MTR_8g012290 40.449 89 43 2 202 289 292 371 4.06e-11 63.5
MS.gene96688.t1 MTR_8g012290 40.449 89 43 2 202 289 292 371 4.24e-11 63.5
MS.gene96688.t1 MTR_5g017040 37.037 81 51 0 210 290 114 194 4.51e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96688.t1 AT2G14760 38.720 328 149 10 10 291 6 327 3.27e-51 171
MS.gene96688.t1 AT2G14760 37.243 341 149 11 10 291 6 340 1.76e-47 162
MS.gene96688.t1 AT4G33880 75.000 104 25 1 181 283 245 348 2.11e-46 159
MS.gene96688.t1 AT5G43175 70.103 97 29 0 187 283 118 214 3.60e-43 147
MS.gene96688.t1 AT1G27740 78.571 84 18 0 200 283 166 249 1.00e-42 147
MS.gene96688.t1 AT5G37800 53.409 88 40 1 182 269 183 269 3.27e-23 97.1
MS.gene96688.t1 AT1G66470 60.000 70 27 1 200 269 195 263 9.35e-22 93.2
MS.gene96688.t1 AT2G24260 53.333 75 35 0 200 274 34 108 6.78e-18 81.6
MS.gene96688.t1 AT4G30980 57.143 70 30 0 195 264 124 193 1.17e-17 82.0
MS.gene96688.t1 AT4G30980 57.143 70 30 0 195 264 172 241 1.57e-17 82.0
MS.gene96688.t1 AT2G24260 60.000 65 26 0 200 264 137 201 2.20e-17 81.6
MS.gene96688.t1 AT5G01305 53.226 62 29 0 199 260 35 96 9.37e-17 76.6
MS.gene96688.t1 AT3G21330 58.929 56 23 0 208 263 276 331 1.25e-16 79.7
MS.gene96688.t1 AT5G58010 55.385 65 29 0 200 264 98 162 9.76e-16 76.3
MS.gene96688.t1 AT4G00120 46.970 66 34 1 210 275 121 185 1.85e-15 73.6
MS.gene96688.t1 AT1G09530 40.909 66 39 0 208 273 344 409 4.33e-12 66.6
MS.gene96688.t1 AT1G09530 40.909 66 39 0 208 273 344 409 4.33e-12 66.6
MS.gene96688.t1 AT1G09530 40.909 66 39 0 208 273 344 409 4.33e-12 66.6
MS.gene96688.t1 AT1G09530 40.909 66 39 0 208 273 344 409 4.33e-12 66.6
MS.gene96688.t1 AT1G09530 40.909 66 39 0 208 273 344 409 4.33e-12 66.6
MS.gene96688.t1 AT1G09530 40.909 66 39 0 208 273 344 409 4.33e-12 66.6
MS.gene96688.t1 AT1G73830 45.000 80 40 2 202 280 148 224 8.37e-12 64.7
MS.gene96688.t1 AT1G18400 50.000 64 31 1 202 264 146 209 8.47e-12 64.3
MS.gene96688.t1 AT5G48560 46.053 76 40 1 190 264 290 365 8.53e-12 65.9
MS.gene96688.t1 AT1G73830 45.000 80 40 2 202 280 148 224 8.54e-12 64.7
MS.gene96688.t1 AT3G23690 40.625 96 54 2 170 264 162 255 8.95e-12 65.5
MS.gene96688.t1 AT4G09180 52.941 68 31 1 200 266 183 250 8.96e-12 64.3
MS.gene96688.t1 AT5G48560 46.053 76 40 1 190 264 290 365 9.39e-12 65.5
MS.gene96688.t1 AT5G50915 43.529 85 43 3 202 285 137 217 1.32e-11 64.3
MS.gene96688.t1 AT5G50915 43.529 85 43 3 202 285 137 217 1.32e-11 64.3
MS.gene96688.t1 AT1G18400 50.000 64 31 1 202 264 146 209 1.35e-11 63.9
MS.gene96688.t1 AT5G50915 43.529 85 43 3 202 285 137 217 1.80e-11 63.5
MS.gene96688.t1 AT5G50915 43.529 85 43 3 202 285 137 217 1.80e-11 63.5
MS.gene96688.t1 AT4G00050 48.077 52 27 0 217 268 121 172 2.05e-11 63.9
MS.gene96688.t1 AT2G20180 47.368 57 30 0 208 264 214 270 6.09e-11 62.8
MS.gene96688.t1 AT2G20180 47.368 57 30 0 208 264 214 270 6.09e-11 62.8
MS.gene96688.t1 AT2G20180 47.368 57 30 0 208 264 214 270 6.09e-11 62.8
MS.gene96688.t1 AT2G20180 47.368 57 30 0 208 264 285 341 7.05e-11 62.8
MS.gene96688.t1 AT2G20180 47.368 57 30 0 208 264 285 341 7.05e-11 62.8
MS.gene96688.t1 AT2G20180 47.368 57 30 0 208 264 285 341 7.05e-11 62.8
MS.gene96688.t1 AT2G20180 47.368 57 30 0 208 264 285 341 7.05e-11 62.8

Find 49 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTTAGTCCTCAATATT+TGG 0.162834 1.1:-76468309 MS.gene96688:CDS
TTGCTCATAGAAGCAGATTT+TGG 0.214748 1.1:+76467991 None:intergenic
CAAATATTGAGGACTAAATT+TGG 0.216033 1.1:+76468310 None:intergenic
GCTTACAATGGAATGAATAT+TGG 0.254169 1.1:-76467076 MS.gene96688:CDS
CCCATTCTTCAGAAATCAAT+TGG 0.299308 1.1:+76468588 None:intergenic
TTCATTCCATTGTAAGCAAT+TGG 0.326950 1.1:+76467082 None:intergenic
CCCAATTGATTTCTGAAGAA+TGG 0.332468 1.1:-76468589 MS.gene96688:CDS
GAAGCTACCTTTGTTCCATT+TGG 0.350337 1.1:+76467394 None:intergenic
AATGATAGCATTGATCATAA+AGG 0.357619 1.1:-76468260 MS.gene96688:CDS
AAGCTACCTTTGTTCCATTT+GGG 0.369150 1.1:+76467395 None:intergenic
CCAATTGATTTCTGAAGAAT+GGG 0.373736 1.1:-76468588 MS.gene96688:CDS
ATGTTTAGAGCCAGTGAAAC+TGG 0.383865 1.1:-76468234 MS.gene96688:CDS
CTACCTAAGTTGGGTGCCTC+AGG 0.386763 1.1:+76467874 None:intergenic
GAAGAATGGGATTCTCTTAG+TGG 0.394320 1.1:-76468575 MS.gene96688:CDS
ATGATAGCATTGATCATAAA+GGG 0.425204 1.1:-76468259 MS.gene96688:CDS
TTCATGAATCAGTTCCTTAG+TGG 0.426280 1.1:-76468527 MS.gene96688:intron
GGTAGAAAATCAAGAGCAAC+AGG 0.428540 1.1:-76467856 MS.gene96688:CDS
CTTCTATCCTCTTCTGAACA+AGG 0.432681 1.1:+76468173 None:intergenic
TGGAACCTACTCATGTGATT+TGG 0.438360 1.1:-76468378 MS.gene96688:CDS
TGCAGGTCTTAGAAAACATT+AGG 0.448557 1.1:-76468026 MS.gene96688:intron
CCTTTGTTCCATTTGGGACA+AGG 0.453226 1.1:+76467401 None:intergenic
TTGCAAACCCTTGTCCCAAA+TGG 0.465028 1.1:-76467409 MS.gene96688:CDS
CTTTGTTCCATTTGGGACAA+GGG 0.489847 1.1:+76467402 None:intergenic
ATGTTATCATCCAAATATTG+AGG 0.490926 1.1:+76468299 None:intergenic
GAACCTGAGGCACCCAACTT+AGG 0.497691 1.1:-76467877 MS.gene96688:CDS
AAGATTTAGGAGCTCAATAG+AGG 0.507018 1.1:-76468126 MS.gene96688:intron
GCAGCAAGAACCAGTTTCAC+TGG 0.514887 1.1:+76468224 None:intergenic
TTCTGAACCTTGTTCAGAAG+AGG 0.517904 1.1:-76468180 MS.gene96688:CDS
TGTTGCCAAATCACATGAGT+AGG 0.518267 1.1:+76468373 None:intergenic
ATGCTCTGTGCATCAGTGGC+AGG 0.521454 1.1:+76467829 None:intergenic
TCACATGTTGACTCAATTGG+AGG 0.523673 1.1:-76467925 MS.gene96688:CDS
TGCTAACAATGAAATGATGA+TGG 0.528083 1.1:-76468204 MS.gene96688:CDS
TCTTCAGAAATCAATTGGGC+AGG 0.532125 1.1:+76468593 None:intergenic
CCATTCTTCAGAAATCAATT+GGG 0.537373 1.1:+76468589 None:intergenic
TCTACCACCACTACAAGTAG+TGG 0.550792 1.1:-76468398 MS.gene96688:CDS
TTCTGAGCTCAGAAGATATG+TGG 0.585124 1.1:-76467114 MS.gene96688:CDS
TTCTATGAGCAACAATGAAG+AGG 0.588809 1.1:-76467980 MS.gene96688:CDS
TATGCTCCAATTGCTTACAA+TGG 0.606083 1.1:-76467088 MS.gene96688:CDS
GAAGAGGACTTAATGTGGCA+TGG 0.606487 1.1:-76467964 MS.gene96688:CDS
AGATATTAGCACTATGCTTG+AGG 0.620150 1.1:-76467289 MS.gene96688:CDS
CCTTGTCCCAAATGGAACAA+AGG 0.623499 1.1:-76467401 MS.gene96688:intron
GGTTCCACTACTTGTAGTGG+TGG 0.630243 1.1:+76468394 None:intergenic
GTAGGTTCCACTACTTGTAG+TGG 0.640555 1.1:+76468391 None:intergenic
TCTGAGCCTAAAAGAACCTG+AGG 0.648501 1.1:-76467890 MS.gene96688:CDS
TAGTGGACAGTACACAGCTG+AGG 0.680277 1.1:-76468558 MS.gene96688:CDS
ACAATGAAGAGGACTTAATG+TGG 0.680942 1.1:-76467969 MS.gene96688:CDS
ATAAATGCTCTGTGCATCAG+TGG 0.693217 1.1:+76467825 None:intergenic
TAGTTGTAGAAGAAAAGCTG+AGG 0.699528 1.1:+76467047 None:intergenic
AGAAAATCAAGAGCAACAGG+TGG 0.715777 1.1:-76467853 MS.gene96688:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAATTGATATCATATT+TGG + chr1.1:76468451-76468470 None:intergenic 15.0%
!!! TCACTATATTAAATTTTGTT+TGG - chr1.1:76467911-76467930 MS.gene96688:CDS 15.0%
!! AGTTCAATTTCCATTAATTA+AGG + chr1.1:76468272-76468291 None:intergenic 20.0%
!! ATGGAAATTGAACTAAAAAT+TGG - chr1.1:76468278-76468297 MS.gene96688:CDS 20.0%
!! ATTGAACTAAAAATTGGTTA+AGG - chr1.1:76468284-76468303 MS.gene96688:CDS 20.0%
!! ATTTAATATAGTGACAACAA+TGG + chr1.1:76467905-76467924 None:intergenic 20.0%
!! TTCAAATAAGTGAATACAAA+AGG - chr1.1:76468102-76468121 MS.gene96688:intron 20.0%
!!! AATTTTTCATTGTGAATTGT+AGG - chr1.1:76468328-76468347 MS.gene96688:CDS 20.0%
!!! ACTATTTTCAAATAAACTAC+TGG - chr1.1:76468000-76468019 MS.gene96688:CDS 20.0%
!!! GGTAATAAAAATACAAGTTT+TGG - chr1.1:76467135-76467154 MS.gene96688:intron 20.0%
!!! TTGTATTTTTATTACCACTA+AGG + chr1.1:76467131-76467150 None:intergenic 20.0%
! AACATGTGAAAAACAGTTAT+TGG + chr1.1:76467705-76467724 None:intergenic 25.0%
! AATTCATCATGATTCTATTG+CGG + chr1.1:76467872-76467891 None:intergenic 25.0%
! ATCTTCCAAACAAAAAAACA+TGG + chr1.1:76467310-76467329 None:intergenic 25.0%
! ATGTTATCATCCAAATATTG+AGG + chr1.1:76467345-76467364 None:intergenic 25.0%
! ATTTGGATATCGAATAATGA+AGG + chr1.1:76468434-76468453 None:intergenic 25.0%
! CAAATATTGAGGACTAAATT+TGG + chr1.1:76467334-76467353 None:intergenic 25.0%
! CAAATTTAGTCCTCAATATT+TGG - chr1.1:76467332-76467351 MS.gene96688:intron 25.0%
!! TGATCATAATTTTACTATGC+AGG - chr1.1:76467598-76467617 MS.gene96688:intron 25.0%
!!! AATGATAGCATTGATCATAA+AGG - chr1.1:76467381-76467400 MS.gene96688:intron 25.0%
!!! ATGATAGCATTGATCATAAA+GGG - chr1.1:76467382-76467401 MS.gene96688:intron 25.0%
AAACACATAAAATCAGCATG+AGG + chr1.1:76467177-76467196 None:intergenic 30.0%
AAGGTAGCTTCCTTAATTAA+TGG - chr1.1:76468259-76468278 MS.gene96688:CDS 30.0%
CCATTCTTCAGAAATCAATT+GGG + chr1.1:76467055-76467074 None:intergenic 30.0%
CTAAATAAGTCTCTCATGAA+AGG - chr1.1:76468151-76468170 MS.gene96688:CDS 30.0%
GCTTACAATGGAATGAATAT+TGG - chr1.1:76468565-76468584 MS.gene96688:CDS 30.0%
TGCTAACAATGAAATGATGA+TGG - chr1.1:76467437-76467456 MS.gene96688:CDS 30.0%
TTCATTCCATTGTAAGCAAT+TGG + chr1.1:76468562-76468581 None:intergenic 30.0%
! ATTTTATGTGTTTCTCCCAA+GGG - chr1.1:76467184-76467203 MS.gene96688:intron 30.0%
! CCAATTGATTTCTGAAGAAT+GGG - chr1.1:76467053-76467072 MS.gene96688:CDS 30.0%
! CTTGATTTTCTACCTAAGTT+GGG + chr1.1:76467779-76467798 None:intergenic 30.0%
! GTTTTTGCAGCATCAAATTA+AGG - chr1.1:76468394-76468413 MS.gene96688:CDS 30.0%
! TCTTGATTTTCTACCTAAGT+TGG + chr1.1:76467780-76467799 None:intergenic 30.0%
!!! ACTGTCCATGTTTTTTTGTT+TGG - chr1.1:76467302-76467321 MS.gene96688:intron 30.0%
!!! TTTTCACATGTTGACTCAAT+TGG - chr1.1:76467713-76467732 MS.gene96688:intron 30.0%
AAGATTTAGGAGCTCAATAG+AGG - chr1.1:76467515-76467534 MS.gene96688:intron 35.0%
AAGCTACCTTTGTTCCATTT+GGG + chr1.1:76468249-76468268 None:intergenic 35.0%
ACAATGAAGAGGACTTAATG+TGG - chr1.1:76467672-76467691 MS.gene96688:intron 35.0%
AGAACCCTGCAAAAAGATTT+AGG - chr1.1:76467502-76467521 MS.gene96688:intron 35.0%
AGAGGATAGAAGCAAAAACA+TGG - chr1.1:76467479-76467498 MS.gene96688:intron 35.0%
AGATATTAGCACTATGCTTG+AGG - chr1.1:76468352-76468371 MS.gene96688:CDS 35.0%
AGTGTCACAAGTGTTTATGT+CGG - chr1.1:76468071-76468090 MS.gene96688:intron 35.0%
CCCATTCTTCAGAAATCAAT+TGG + chr1.1:76467056-76467075 None:intergenic 35.0%
GCTGCAAAAACTTCACATAT+TGG + chr1.1:76468385-76468404 None:intergenic 35.0%
TAGTTGTAGAAGAAAAGCTG+AGG + chr1.1:76468597-76468616 None:intergenic 35.0%
TATGCTCCAATTGCTTACAA+TGG - chr1.1:76468553-76468572 MS.gene96688:CDS 35.0%
TGCAGGTCTTAGAAAACATT+AGG - chr1.1:76467615-76467634 MS.gene96688:intron 35.0%
TTCATGAATCAGTTCCTTAG+TGG - chr1.1:76467114-76467133 MS.gene96688:CDS 35.0%
TTCTATGAGCAACAATGAAG+AGG - chr1.1:76467661-76467680 MS.gene96688:intron 35.0%
! AGCTCCTAAATCTTTTTGCA+GGG + chr1.1:76467509-76467528 None:intergenic 35.0%
! CCCAATTGATTTCTGAAGAA+TGG - chr1.1:76467052-76467071 MS.gene96688:CDS 35.0%
! GATTTTATGTGTTTCTCCCA+AGG - chr1.1:76467183-76467202 MS.gene96688:intron 35.0%
! TTGCTCATAGAAGCAGATTT+TGG + chr1.1:76467653-76467672 None:intergenic 35.0%
AGAAAATCAAGAGCAACAGG+TGG - chr1.1:76467788-76467807 MS.gene96688:intron 40.0%
ATAAATGCTCTGTGCATCAG+TGG + chr1.1:76467819-76467838 None:intergenic 40.0%
CTTCTATCCTCTTCTGAACA+AGG + chr1.1:76467471-76467490 None:intergenic 40.0%
GAAGAATGGGATTCTCTTAG+TGG - chr1.1:76467066-76467085 MS.gene96688:CDS 40.0%
GAAGCTACCTTTGTTCCATT+TGG + chr1.1:76468250-76468269 None:intergenic 40.0%
GGTAGAAAATCAAGAGCAAC+AGG - chr1.1:76467785-76467804 MS.gene96688:intron 40.0%
TCAGCATGAGGAAAGTAAGA+TGG + chr1.1:76467165-76467184 None:intergenic 40.0%
TCTTCAGAAATCAATTGGGC+AGG + chr1.1:76467051-76467070 None:intergenic 40.0%
TGGAACCTACTCATGTGATT+TGG - chr1.1:76467263-76467282 MS.gene96688:CDS 40.0%
TGTTGCCAAATCACATGAGT+AGG + chr1.1:76467271-76467290 None:intergenic 40.0%
TTCTGAACCTTGTTCAGAAG+AGG - chr1.1:76467461-76467480 MS.gene96688:intron 40.0%
TTCTGAGCTCAGAAGATATG+TGG - chr1.1:76468527-76468546 MS.gene96688:intron 40.0%
TTGCGGAAATGTCACTCAAA+TGG + chr1.1:76467855-76467874 None:intergenic 40.0%
! ATGTTTAGAGCCAGTGAAAC+TGG - chr1.1:76467407-76467426 MS.gene96688:CDS 40.0%
! CTTTGTTCCATTTGGGACAA+GGG + chr1.1:76468242-76468261 None:intergenic 40.0%
! GAGCTCCTAAATCTTTTTGC+AGG + chr1.1:76467510-76467529 None:intergenic 40.0%
!! TCACATGTTGACTCAATTGG+AGG - chr1.1:76467716-76467735 MS.gene96688:intron 40.0%
CCTTGTCCCAAATGGAACAA+AGG - chr1.1:76468240-76468259 MS.gene96688:CDS 45.0%
GAAGAGGACTTAATGTGGCA+TGG - chr1.1:76467677-76467696 MS.gene96688:intron 45.0%
GTAGGTTCCACTACTTGTAG+TGG + chr1.1:76467253-76467272 None:intergenic 45.0%
TCTACCACCACTACAAGTAG+TGG - chr1.1:76467243-76467262 MS.gene96688:intron 45.0%
TCTGAGCCTAAAAGAACCTG+AGG - chr1.1:76467751-76467770 MS.gene96688:intron 45.0%
TTGCAAACCCTTGTCCCAAA+TGG - chr1.1:76468232-76468251 MS.gene96688:CDS 45.0%
! AGTACTTGTGCTACTCCCTT+GGG + chr1.1:76467202-76467221 None:intergenic 45.0%
! CCTTTGTTCCATTTGGGACA+AGG + chr1.1:76468243-76468262 None:intergenic 45.0%
!! GATTAATTAATTTATTTATT+TGG - chr1.1:76468494-76468513 MS.gene96688:intron 5.0%
GCAGCAAGAACCAGTTTCAC+TGG + chr1.1:76467420-76467439 None:intergenic 50.0%
GGTTCCACTACTTGTAGTGG+TGG + chr1.1:76467250-76467269 None:intergenic 50.0%
! CAGTACTTGTGCTACTCCCT+TGG + chr1.1:76467203-76467222 None:intergenic 50.0%
! TAGTGGACAGTACACAGCTG+AGG - chr1.1:76467083-76467102 MS.gene96688:CDS 50.0%
! TGGGTGCCTCAGGTTCTTTT+AGG + chr1.1:76467760-76467779 None:intergenic 50.0%
ATGCTCTGTGCATCAGTGGC+AGG + chr1.1:76467815-76467834 None:intergenic 55.0%
! CTACCTAAGTTGGGTGCCTC+AGG + chr1.1:76467770-76467789 None:intergenic 55.0%
! GAACCTGAGGCACCCAACTT+AGG - chr1.1:76467764-76467783 MS.gene96688:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 76467042 76468621 76467042 ID=MS.gene96688
chr1.1 mRNA 76467042 76468621 76467042 ID=MS.gene96688.t1;Parent=MS.gene96688
chr1.1 exon 76468528 76468621 76468528 ID=MS.gene96688.t1.exon1;Parent=MS.gene96688.t1
chr1.1 CDS 76468528 76468621 76468528 ID=cds.MS.gene96688.t1;Parent=MS.gene96688.t1
chr1.1 exon 76468127 76468458 76468127 ID=MS.gene96688.t1.exon2;Parent=MS.gene96688.t1
chr1.1 CDS 76468127 76468458 76468127 ID=cds.MS.gene96688.t1;Parent=MS.gene96688.t1
chr1.1 exon 76467819 76468043 76467819 ID=MS.gene96688.t1.exon3;Parent=MS.gene96688.t1
chr1.1 CDS 76467819 76468043 76467819 ID=cds.MS.gene96688.t1;Parent=MS.gene96688.t1
chr1.1 exon 76467402 76467467 76467402 ID=MS.gene96688.t1.exon4;Parent=MS.gene96688.t1
chr1.1 CDS 76467402 76467467 76467402 ID=cds.MS.gene96688.t1;Parent=MS.gene96688.t1
chr1.1 exon 76467248 76467313 76467248 ID=MS.gene96688.t1.exon5;Parent=MS.gene96688.t1
chr1.1 CDS 76467248 76467313 76467248 ID=cds.MS.gene96688.t1;Parent=MS.gene96688.t1
chr1.1 exon 76467042 76467137 76467042 ID=MS.gene96688.t1.exon6;Parent=MS.gene96688.t1
chr1.1 CDS 76467042 76467137 76467042 ID=cds.MS.gene96688.t1;Parent=MS.gene96688.t1
Gene Sequence

>MS.gene96688

ATGGAACCTGCCCAATTGATTTCTGAAGAATGGGATTCTCTTAGTGGACAGTACACAGCTGAGGAAGCTGACTTCATGAATCAGTTCCTTAGTGGTAATAAAAATACAAGTTTTGGCATGCCATCTTACTTTCCTCATGCTGATTTTATGTGTTTCTCCCAAGGGAGTAGCACAAGTACTGATAATAGTGCTAATACATTTTCTACCACCACTACAAGTAGTGGAACCTACTCATGTGATTTGGCAACAAACTTTGATTCACTGTCCATGTTTTTTTGTTTGGAAGATGCCAAATTTAGTCCTCAATATTTGGATGATAACATAAGTAAACACATAAATAATGATAGCATTGATCATAAAGGGTCATGTTTAGAGCCAGTGAAACTGGTTCTTGCTGCTAACAATGAAATGATGATGGTTTCTGAACCTTGTTCAGAAGAGGATAGAAGCAAAAACATGGAGAACCCTGCAAAAAGATTTAGGAGCTCAATAGAGGTACAATAATATAATAGTATGAAGTTTAAGTTATGTTGTTTATTTGTGTGAGATTAGATTGTGATCATAATTTTACTATGCAGGTCTTAGAAAACATTAGGAATGTTAAGTGTCCAAAATCTGCTTCTATGAGCAACAATGAAGAGGACTTAATGTGGCATGGCTCCAATAACTGTTTTTCACATGTTGACTCAATTGGAGGAACATCTTCAAATCTGAGCCTAAAAGAACCTGAGGCACCCAACTTAGGTAGAAAATCAAGAGCAACAGGTGGTCCTGCCACTGATGCACAGAGCATTTATGCAAGAGTAAGTACCATTTGAGTGACATTTCCGCAATAGAATCATGATGAATTATAATACATTCCATTGTTGTCACTATATTAAATTTTGTTTGGATAATCAACTCAATTAAGCACTTATCATGTACATAAATGCTTATGTACAAGTTATTTTTTTGACAAACTATTTTCAAATAAACTACTGGTTGTTTTCATAACGTGAACATGTCATATGTTTTCATAAACTCTCACAAAGTGTCACAAGTGTTTATGTCGGTAAATAAGTTCAAATAAGTGAATACAAAAGGTATTATATTCTTGTCTTTGCTTTTAGCTAAATAAGTCTCTCATGAAAGGTTTATTTTCTTTTGTTCTGCAGAAGAGAAGAGAAAGAATAAATGAAAGATTGAGAATCTTGCAAACCCTTGTCCCAAATGGAACAAAGGTAGCTTCCTTAATTAATGGAAATTGAACTAAAAATTGGTTAAGGTGTACAAATTCTCAATTTCTCAATTTTTCATTGTGAATTGTAGGTAGATATTAGCACTATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAGCATCAAATTAAGGTAACTATTTGATAACCTTCATTATTCGATATCCAAATATGATATCAATTTTTCAGCTTTTTACATGCAAAAGATAATGATTAATTAATTTATTTATTTGGATGAAACAGCTTCTGAGCTCAGAAGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATGAATATTGGATTAGACCTCAGCTTTTCTTCTACAACTAATTAA
Protein sequence

>MS.gene96688.t1

MEPAQLISEEWDSLSGQYTAEEADFMNQFLSGSSTSTDNSANTFSTTTTSSGTYSCDLATNFDSLSMFFCLEDAKFSPQYLDDNISKHINNDSIDHKGSCLEPVKLVLAANNEMMMVSEPCSEEDRSKNMENPAKRFRSSIEVLENIRNVKCPKSASMSNNEEDLMWHGSNNCFSHVDSIGGTSSNLSLKEPEAPNLGRKSRATGGPATDAQSIYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQHQIKLLSSEDMWMYAPIAYNGMNIGLDLSFSSTTN