AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96689

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96689.t1 MTR_1g106460 95.758 330 14 0 1 330 1 330 0.0 649
MS.gene96689.t1 MTR_1g106460 94.928 276 14 0 1 276 1 276 0.0 533
MS.gene96689.t1 MTR_5g005110 49.699 332 131 10 9 329 9 315 3.55e-86 263
MS.gene96689.t1 MTR_1g106470 43.202 331 132 9 1 324 1 282 5.92e-61 196
MS.gene96689.t1 MTR_5g005110 43.214 280 123 10 9 277 9 263 1.50e-49 166
MS.gene96689.t1 MTR_3g103030 52.147 163 77 1 161 323 153 314 6.71e-48 164
MS.gene96689.t1 MTR_1g018090 51.235 162 69 2 152 313 198 349 1.54e-40 145
MS.gene96689.t1 MTR_1g106480 54.745 137 29 2 217 323 18 151 3.82e-38 133
MS.gene96689.t1 MTR_1g106470 36.014 286 127 9 1 279 1 237 2.25e-28 110
MS.gene96689.t1 MTR_5g079500 62.857 70 26 0 237 306 217 286 8.03e-24 99.8
MS.gene96689.t1 MTR_8g093500 53.623 69 32 0 234 302 110 178 4.91e-18 83.2
MS.gene96689.t1 MTR_4g131160 43.333 90 49 1 214 301 170 259 7.13e-17 81.3
MS.gene96689.t1 MTR_4g131160 43.333 90 49 1 214 301 173 262 8.04e-17 80.9
MS.gene96689.t1 MTR_3g101810 49.254 67 34 0 234 300 167 233 1.13e-16 79.0
MS.gene96689.t1 MTR_7g069590 58.182 55 23 0 245 299 33 87 3.44e-16 75.1
MS.gene96689.t1 MTR_1g018090 40.310 129 67 2 152 280 198 316 4.70e-16 77.8
MS.gene96689.t1 MTR_1g080890 47.059 68 36 0 234 301 189 256 5.01e-14 72.4
MS.gene96689.t1 MTR_1g019240 43.548 62 35 0 254 315 101 162 1.68e-12 67.0
MS.gene96689.t1 MTR_5g017040 42.105 76 44 0 254 329 121 196 3.50e-12 67.0
MS.gene96689.t1 MTR_1g084980 50.000 48 24 0 254 301 478 525 1.14e-11 66.2
MS.gene96689.t1 MTR_3g449770 36.264 91 46 3 224 307 288 373 2.88e-11 64.7
MS.gene96689.t1 MTR_1g069155 37.349 83 45 1 226 301 298 380 7.11e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96689.t1 AT2G14760 37.216 352 150 12 10 324 6 323 6.12e-56 185
MS.gene96689.t1 AT2G14760 35.890 365 150 13 10 324 6 336 3.23e-52 176
MS.gene96689.t1 AT4G33880 38.136 354 165 16 10 320 6 348 2.48e-45 158
MS.gene96689.t1 AT5G43175 54.140 157 57 2 184 325 63 219 5.82e-45 153
MS.gene96689.t1 AT1G27740 53.642 151 52 3 176 325 121 254 1.18e-44 153
MS.gene96689.t1 AT1G66470 54.839 93 41 1 214 306 172 263 1.63e-24 101
MS.gene96689.t1 AT5G37800 61.039 77 27 1 230 306 196 269 1.70e-24 101
MS.gene96689.t1 AT4G30980 45.783 83 45 0 219 301 111 193 1.70e-17 82.0
MS.gene96689.t1 AT4G30980 45.783 83 45 0 219 301 159 241 1.90e-17 82.4
MS.gene96689.t1 AT2G24260 53.846 65 30 0 237 301 34 98 4.27e-17 79.7
MS.gene96689.t1 AT2G24260 53.846 65 30 0 237 301 137 201 9.84e-17 80.5
MS.gene96689.t1 AT5G01305 48.649 74 33 1 237 305 36 109 2.37e-16 76.3
MS.gene96689.t1 AT3G21330 39.394 99 59 1 202 300 234 331 3.52e-16 79.0
MS.gene96689.t1 AT5G58010 47.143 70 37 0 232 301 93 162 7.85e-16 77.0
MS.gene96689.t1 AT4G00120 37.975 79 49 0 222 300 96 174 3.32e-15 73.6
MS.gene96689.t1 AT4G36930 39.189 74 45 0 245 318 198 271 5.51e-12 66.6
MS.gene96689.t1 AT2G20180 40.244 82 38 2 254 326 223 302 5.52e-12 66.6
MS.gene96689.t1 AT2G20180 40.244 82 38 2 254 326 223 302 5.52e-12 66.6
MS.gene96689.t1 AT2G20180 40.244 82 38 2 254 326 223 302 5.52e-12 66.6
MS.gene96689.t1 AT1G09530 39.394 66 40 0 254 319 353 418 9.17e-12 66.2
MS.gene96689.t1 AT1G09530 39.394 66 40 0 254 319 353 418 9.17e-12 66.2
MS.gene96689.t1 AT1G09530 39.394 66 40 0 254 319 353 418 9.17e-12 66.2
MS.gene96689.t1 AT1G09530 39.394 66 40 0 254 319 353 418 9.17e-12 66.2
MS.gene96689.t1 AT1G09530 39.394 66 40 0 254 319 353 418 9.17e-12 66.2
MS.gene96689.t1 AT1G09530 39.394 66 40 0 254 319 353 418 9.17e-12 66.2
MS.gene96689.t1 AT2G20180 40.244 82 38 2 254 326 294 373 9.76e-12 66.2
MS.gene96689.t1 AT2G20180 40.244 82 38 2 254 326 294 373 9.76e-12 66.2
MS.gene96689.t1 AT2G20180 40.244 82 38 2 254 326 294 373 9.76e-12 66.2
MS.gene96689.t1 AT2G20180 40.244 82 38 2 254 326 294 373 9.76e-12 66.2
MS.gene96689.t1 AT5G67110 42.857 77 28 3 254 330 103 163 9.15e-11 61.2

Find 54 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAACAGATTTGAAGTTAA+AGG 0.203807 1.1:-76461830 MS.gene96689:CDS
TCAAATCTGTTGAATCATTC+TGG 0.235168 1.1:+76461839 None:intergenic
CATTAGGGACTAGGCTTTGC+AGG 0.277798 1.1:+76461582 None:intergenic
CTTGGAAGTTATTAAGTAAC+TGG 0.304266 1.1:+76462706 None:intergenic
AACACTATAAGTGCTAAAAT+TGG 0.312512 1.1:+76462437 None:intergenic
TTCATTCCATTGTAAGCAAT+TGG 0.326950 1.1:+76461221 None:intergenic
CAAGTTTCTGAGCACCATTA+TGG 0.327811 1.1:-76462687 MS.gene96689:CDS
TCAACAGATTTGAAGTTAAA+GGG 0.332099 1.1:-76461829 MS.gene96689:CDS
AGAGTTTGGTAAAGATGTTT+TGG 0.332649 1.1:-76462373 MS.gene96689:CDS
CTAAATTGAAATTTCCATAA+TGG 0.336286 1.1:+76462673 None:intergenic
CCTTGGTTCCATTAGGGACT+AGG 0.345834 1.1:+76461573 None:intergenic
CATAATGGTGCTCAGAAACT+TGG 0.346093 1.1:+76462688 None:intergenic
GAAAACACTTCTGAAGAGTT+TGG 0.361815 1.1:-76462387 MS.gene96689:CDS
CAAGGAAAGAAAATGGATTC+TGG 0.368940 1.1:-76462798 None:intergenic
TTTAGCACTTATAGTGTTCA+AGG 0.374420 1.1:-76462432 MS.gene96689:CDS
AAAGCTACCTTGGTTCCATT+AGG 0.376583 1.1:+76461566 None:intergenic
GGATGAAAGTCATGATCTTC+AGG 0.377305 1.1:-76461938 MS.gene96689:CDS
ACAAGAGAAATGTGAAATCT+AGG 0.391427 1.1:-76461999 MS.gene96689:CDS
TTTATTGCTAGTATCAGAAA+TGG 0.398251 1.1:+76462527 None:intergenic
AAGCTACCTTGGTTCCATTA+GGG 0.399329 1.1:+76461567 None:intergenic
GCTATATATCTATGGTAGTT+CGG 0.420297 1.1:+76461169 None:intergenic
CTGCAAAGCCTAGTCCCTAA+TGG 0.420311 1.1:-76461581 MS.gene96689:CDS
AATAAATTTCATAATACAAA+TGG 0.447590 1.1:-76462510 MS.gene96689:CDS
GAAGAATGGAGTTCTCTTAG+TGG 0.449677 1.1:-76462762 MS.gene96689:CDS
ACTATTGTGGATTCATGTCC+TGG 0.460970 1.1:+76462630 None:intergenic
TATATCTATGGTAGTTCGGT+TGG 0.463306 1.1:+76461173 None:intergenic
TAGAAATTCCATCTACATCA+TGG 0.473913 1.1:-76462653 MS.gene96689:CDS
TGTCCTGGCCATGATGTAGA+TGG 0.481256 1.1:+76462645 None:intergenic
GCTATTCATGCTCACTATTG+TGG 0.481463 1.1:+76462617 None:intergenic
AAGGGAAAATCAAAATGTAA+TGG 0.488727 1.1:-76461811 MS.gene96689:CDS
GGCATTCATGTAGCCAATGT+TGG 0.502539 1.1:+76462458 None:intergenic
ATATCTATGGTAGTTCGGTT+GGG 0.502830 1.1:+76461174 None:intergenic
AAGATCTAGGAGCTCGATGA+AGG 0.519130 1.1:-76462304 MS.gene96689:intron
TTCTGAGCTCTGATGATCAC+TGG 0.521996 1.1:-76461253 MS.gene96689:CDS
GCTTACAATGGAATGAACAT+TGG 0.525606 1.1:-76461215 MS.gene96689:CDS
GTGAGCAAAGTTGTGAAGAA+TGG 0.531367 1.1:-76462776 MS.gene96689:CDS
GTTCGGTTGGGATAATGTTG+AGG 0.541601 1.1:+76461186 None:intergenic
AATGATCATGTAGCCAACAT+TGG 0.547548 1.1:-76462471 MS.gene96689:CDS
ATTCCATCTACATCATGGCC+AGG 0.561187 1.1:-76462648 MS.gene96689:CDS
GTTCAAAAGCAACGCTGACG+AGG 0.565933 1.1:-76461959 MS.gene96689:CDS
GTTCTTGATACACTCTTTCG+CGG 0.570482 1.1:+76462347 None:intergenic
TCAGGAGCAGAATTTGAGCT+CGG 0.588142 1.1:-76461920 MS.gene96689:CDS
GCTTTAAAGAAGCTAAATGC+AGG 0.589797 1.1:-76461880 MS.gene96689:CDS
GGATATCAGCACCATGCTTG+AGG 0.592275 1.1:-76461463 MS.gene96689:CDS
AAATTTCATAATACAAATGG+TGG 0.597992 1.1:-76462507 MS.gene96689:CDS
TATGCTCCAATTGCTTACAA+TGG 0.606083 1.1:-76461227 MS.gene96689:CDS
GGAAAATCAAAATGTAATGG+AGG 0.608687 1.1:-76461808 MS.gene96689:CDS
TTGCACAGCTTCCTCAAGCA+TGG 0.610000 1.1:+76461452 None:intergenic
ATAGACACCTTGTGGATCAG+AGG 0.616647 1.1:+76461780 None:intergenic
ATCTAGGAAGAAACCAAAGT+CGG 0.617908 1.1:-76461983 MS.gene96689:CDS
CCTAGTCCCTAATGGAACCA+AGG 0.646129 1.1:-76461573 MS.gene96689:intron
GGTTCTGCCTCTGATCCACA+AGG 0.648330 1.1:-76461787 MS.gene96689:CDS
GGAGCAGAATTTGAGCTCGG+AGG 0.653936 1.1:-76461917 MS.gene96689:CDS
AGAGTGTATCAAGAACAACC+TGG 0.703200 1.1:-76462340 MS.gene96689:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATTTCATAATACAAA+TGG - chr1.1:76461454-76461473 MS.gene96689:CDS 10.0%
!! TATTTCAAGAATATATAATA+TGG + chr1.1:76462644-76462663 None:intergenic 10.0%
!!! TTCAACTATTTTTAAATAAT+TGG - chr1.1:76462432-76462451 MS.gene96689:CDS 10.0%
!! TAAATTTATGATTCATATCA+AGG + chr1.1:76462601-76462620 None:intergenic 15.0%
!! AAATTTCATAATACAAATGG+TGG - chr1.1:76461457-76461476 MS.gene96689:CDS 20.0%
!! AACAAATAGAAACATGTATT+TGG + chr1.1:76461777-76461796 None:intergenic 20.0%
!! CAAATTAAGGTAAAAACATA+AGG - chr1.1:76462556-76462575 MS.gene96689:CDS 20.0%
!! CTAAATTGAAATTTCCATAA+TGG + chr1.1:76461294-76461313 None:intergenic 20.0%
!! GGTATTATGTATAAGAAAAA+AGG - chr1.1:76461727-76461746 MS.gene96689:intron 20.0%
!!! CTGTGATTTTGAATTATTAA+AGG - chr1.1:76462287-76462306 MS.gene96689:intron 20.0%
!!! CTTATGTTTTTACCTTAATT+TGG + chr1.1:76462558-76462577 None:intergenic 20.0%
!!! TATTTGTTTACATTTAAGAC+CGG - chr1.1:76461789-76461808 MS.gene96689:CDS 20.0%
!!! TTATTAGCAATGGTATTTTT+AGG + chr1.1:76462237-76462256 None:intergenic 20.0%
!!! TTTTCTTACTCATGAAATAT+AGG - chr1.1:76462477-76462496 MS.gene96689:CDS 20.0%
!!! TTTTGATTTAATGATTCCAT+AGG - chr1.1:76461933-76461952 MS.gene96689:CDS 20.0%
! AAAAATCAGGAAAAAGATCT+AGG - chr1.1:76461647-76461666 MS.gene96689:intron 25.0%
! AACACTATAAGTGCTAAAAT+TGG + chr1.1:76461530-76461549 None:intergenic 25.0%
! AAGGGAAAATCAAAATGTAA+TGG - chr1.1:76462153-76462172 MS.gene96689:intron 25.0%
! AATTCAAAATCACAGTACTT+TGG + chr1.1:76462282-76462301 None:intergenic 25.0%
! GGACATAAAATTATTAGCAA+TGG + chr1.1:76462247-76462266 None:intergenic 25.0%
! TTCTTATACATAATACCAGA+GGG + chr1.1:76461724-76461743 None:intergenic 25.0%
! TTTATTGCTAGTATCAGAAA+TGG + chr1.1:76461440-76461459 None:intergenic 25.0%
! TTTCTTATACATAATACCAG+AGG + chr1.1:76461725-76461744 None:intergenic 25.0%
!! TCAACAGATTTGAAGTTAAA+GGG - chr1.1:76462135-76462154 MS.gene96689:intron 25.0%
!! TTACTATTATCAGCATTTTG+AGG + chr1.1:76461385-76461404 None:intergenic 25.0%
!! TTCAACAGATTTGAAGTTAA+AGG - chr1.1:76462134-76462153 MS.gene96689:intron 25.0%
!!! GTATTTTTAGGAAATGCAAT+TGG + chr1.1:76462225-76462244 None:intergenic 25.0%
!!! TCAATGTGTTTAATTTTGTC+TGG - chr1.1:76461890-76461909 MS.gene96689:CDS 25.0%
ACAAGAGAAATGTGAAATCT+AGG - chr1.1:76461965-76461984 MS.gene96689:CDS 30.0%
CTTGGAAGTTATTAAGTAAC+TGG + chr1.1:76461261-76461280 None:intergenic 30.0%
GGAAAATCAAAATGTAATGG+AGG - chr1.1:76462156-76462175 MS.gene96689:intron 30.0%
GTACTTTGGACAAAAATTCA+AGG + chr1.1:76462268-76462287 None:intergenic 30.0%
TAGAAATTCCATCTACATCA+TGG - chr1.1:76461311-76461330 MS.gene96689:intron 30.0%
TCAAATCTGTTGAATCATTC+TGG + chr1.1:76462128-76462147 None:intergenic 30.0%
TCTTACTCATGAAATATAGG+TGG - chr1.1:76462480-76462499 MS.gene96689:CDS 30.0%
TTCATTCCATTGTAAGCAAT+TGG + chr1.1:76462746-76462765 None:intergenic 30.0%
TTTAGCACTTATAGTGTTCA+AGG - chr1.1:76461532-76461551 MS.gene96689:intron 30.0%
! AAGTGTTTTCAGTTATCTGT+TGG + chr1.1:76461567-76461586 None:intergenic 30.0%
! AGAGTTTGGTAAAGATGTTT+TGG - chr1.1:76461591-76461610 MS.gene96689:CDS 30.0%
! ATCTTTTTCCTGATTTTTCC+AGG + chr1.1:76461645-76461664 None:intergenic 30.0%
! GCAATATGTGAAGTTTTTAC+AGG - chr1.1:76462531-76462550 MS.gene96689:CDS 30.0%
! GTTTTTACAGGTCCAAATTA+AGG - chr1.1:76462543-76462562 MS.gene96689:CDS 30.0%
AAGAACAACCTGGAAAAATC+AGG - chr1.1:76461634-76461653 MS.gene96689:intron 35.0%
AATGATCATGTAGCCAACAT+TGG - chr1.1:76461493-76461512 MS.gene96689:intron 35.0%
ACCAGGACTATAAAAAAAGC+AGG + chr1.1:76461831-76461850 None:intergenic 35.0%
ATCTAGGAAGAAACCAAAGT+CGG - chr1.1:76461981-76462000 MS.gene96689:CDS 35.0%
ATGATTCATATCAAGGCCTA+AGG + chr1.1:76462594-76462613 None:intergenic 35.0%
GCTTACAATGGAATGAACAT+TGG - chr1.1:76462749-76462768 MS.gene96689:CDS 35.0%
GTGATATTGTGACAAGCATT+TGG - chr1.1:76461849-76461868 MS.gene96689:CDS 35.0%
TATGCTCCAATTGCTTACAA+TGG - chr1.1:76462737-76462756 MS.gene96689:CDS 35.0%
TCTTTGTAAATTACTCCCTC+TGG - chr1.1:76461706-76461725 MS.gene96689:intron 35.0%
! CTCTTGTTCTTTTGTACCTA+TGG + chr1.1:76461952-76461971 None:intergenic 35.0%
! GAAAACACTTCTGAAGAGTT+TGG - chr1.1:76461577-76461596 MS.gene96689:CDS 35.0%
! TGTTTACATTTAAGACCGGA+GGG - chr1.1:76461793-76461812 MS.gene96689:CDS 35.0%
! TTGTTTACATTTAAGACCGG+AGG - chr1.1:76461792-76461811 MS.gene96689:CDS 35.0%
!! GCTTTAAAGAAGCTAAATGC+AGG - chr1.1:76462084-76462103 MS.gene96689:intron 35.0%
!!! TCCTGCTTTTTTTATAGTCC+TGG - chr1.1:76461827-76461846 MS.gene96689:CDS 35.0%
AAAGCTACCTTGGTTCCATT+AGG + chr1.1:76462401-76462420 None:intergenic 40.0%
AAGCTACCTTGGTTCCATTA+GGG + chr1.1:76462400-76462419 None:intergenic 40.0%
ACTATTGTGGATTCATGTCC+TGG + chr1.1:76461337-76461356 None:intergenic 40.0%
AGAGTGTATCAAGAACAACC+TGG - chr1.1:76461624-76461643 MS.gene96689:intron 40.0%
ATGCTTGTCACAATATCACC+AGG + chr1.1:76461848-76461867 None:intergenic 40.0%
ATTCATATCAAGGCCTAAGG+AGG + chr1.1:76462591-76462610 None:intergenic 40.0%
CAAGTTTCTGAGCACCATTA+TGG - chr1.1:76461277-76461296 MS.gene96689:intron 40.0%
CATAATGGTGCTCAGAAACT+TGG + chr1.1:76461279-76461298 None:intergenic 40.0%
GAAGAATGGAGTTCTCTTAG+TGG - chr1.1:76461202-76461221 MS.gene96689:CDS 40.0%
GCTATTCATGCTCACTATTG+TGG + chr1.1:76461350-76461369 None:intergenic 40.0%
GGATGAAAGTCATGATCTTC+AGG - chr1.1:76462026-76462045 MS.gene96689:intron 40.0%
GTGAGCAAAGTTGTGAAGAA+TGG - chr1.1:76461188-76461207 MS.gene96689:CDS 40.0%
GTTCTTGATACACTCTTTCG+CGG + chr1.1:76461620-76461639 None:intergenic 40.0%
TGTCATTGAGAAAGCTACCT+TGG + chr1.1:76462411-76462430 None:intergenic 40.0%
! AAGAAAAAAGGTGCGTGTGT+TGG - chr1.1:76461739-76461758 MS.gene96689:intron 40.0%
! ACTTTTGCATAGACACCTTG+TGG + chr1.1:76462195-76462214 None:intergenic 40.0%
!! AGCTGAGGAAGCTGATTTTA+TGG - chr1.1:76461234-76461253 MS.gene96689:CDS 40.0%
!! GCTGAGGAAGCTGATTTTAT+GGG - chr1.1:76461235-76461254 MS.gene96689:CDS 40.0%
!! TTGCTTTTGAACTCCGACTT+TGG + chr1.1:76461997-76462016 None:intergenic 40.0%
!!! TAGTGGATTTTACACAGCTG+AGG - chr1.1:76461219-76461238 MS.gene96689:CDS 40.0%
AAGATCTAGGAGCTCGATGA+AGG - chr1.1:76461660-76461679 MS.gene96689:intron 45.0%
AAGGATCCTCATTCCTCCTT+AGG - chr1.1:76462575-76462594 MS.gene96689:CDS 45.0%
ATAGACACCTTGTGGATCAG+AGG + chr1.1:76462187-76462206 None:intergenic 45.0%
ATTCCATCTACATCATGGCC+AGG - chr1.1:76461316-76461335 MS.gene96689:intron 45.0%
GGCATTCATGTAGCCAATGT+TGG + chr1.1:76461509-76461528 None:intergenic 45.0%
GTTCGGTTGGGATAATGTTG+AGG + chr1.1:76462781-76462800 None:intergenic 45.0%
TCAGGAGCAGAATTTGAGCT+CGG - chr1.1:76462044-76462063 MS.gene96689:intron 45.0%
! TTCTGAGCTCTGATGATCAC+TGG - chr1.1:76462711-76462730 MS.gene96689:CDS 45.0%
AGGAAGTGACTTACTCCCTC+CGG + chr1.1:76461811-76461830 None:intergenic 50.0%
CATTAGGGACTAGGCTTTGC+AGG + chr1.1:76462385-76462404 None:intergenic 50.0%
CCTAGTCCCTAATGGAACCA+AGG - chr1.1:76462391-76462410 MS.gene96689:CDS 50.0%
CCTTGGTTCCATTAGGGACT+AGG + chr1.1:76462394-76462413 None:intergenic 50.0%
CTGCAAAGCCTAGTCCCTAA+TGG - chr1.1:76462383-76462402 MS.gene96689:CDS 50.0%
GGATATCAGCACCATGCTTG+AGG - chr1.1:76462501-76462520 MS.gene96689:CDS 50.0%
GTTCAAAAGCAACGCTGACG+AGG - chr1.1:76462005-76462024 MS.gene96689:CDS 50.0%
TCAAGGCCTAAGGAGGAATG+AGG + chr1.1:76462584-76462603 None:intergenic 50.0%
TCTAGGAGCTCGATGAAGGT+AGG - chr1.1:76461664-76461683 MS.gene96689:intron 50.0%
TGTCCTGGCCATGATGTAGA+TGG + chr1.1:76461322-76461341 None:intergenic 50.0%
TTGCACAGCTTCCTCAAGCA+TGG + chr1.1:76462515-76462534 None:intergenic 50.0%
GGAGCAGAATTTGAGCTCGG+AGG - chr1.1:76462047-76462066 MS.gene96689:intron 55.0%
GGTTCTGCCTCTGATCCACA+AGG - chr1.1:76462177-76462196 MS.gene96689:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 76461178 76462808 76461178 ID=MS.gene96689
chr1.1 mRNA 76461178 76462808 76461178 ID=MS.gene96689.t1;Parent=MS.gene96689
chr1.1 exon 76462305 76462808 76462305 ID=MS.gene96689.t1.exon1;Parent=MS.gene96689.t1
chr1.1 CDS 76462305 76462808 76462305 ID=cds.MS.gene96689.t1;Parent=MS.gene96689.t1
chr1.1 exon 76461774 76462031 76461774 ID=MS.gene96689.t1.exon2;Parent=MS.gene96689.t1
chr1.1 CDS 76461774 76462031 76461774 ID=cds.MS.gene96689.t1;Parent=MS.gene96689.t1
chr1.1 exon 76461574 76461639 76461574 ID=MS.gene96689.t1.exon3;Parent=MS.gene96689.t1
chr1.1 CDS 76461574 76461639 76461574 ID=cds.MS.gene96689.t1;Parent=MS.gene96689.t1
chr1.1 exon 76461422 76461487 76461422 ID=MS.gene96689.t1.exon4;Parent=MS.gene96689.t1
chr1.1 CDS 76461422 76461487 76461422 ID=cds.MS.gene96689.t1;Parent=MS.gene96689.t1
chr1.1 exon 76461178 76461276 76461178 ID=MS.gene96689.t1.exon5;Parent=MS.gene96689.t1
chr1.1 CDS 76461178 76461276 76461178 ID=cds.MS.gene96689.t1;Parent=MS.gene96689.t1
Gene Sequence

>MS.gene96689

ATGGATTCTGGTGAGCAAAGTTGTGAAGAATGGAGTTCTCTTAGTGGATTTTACACAGCTGAGGAAGCTGATTTTATGGGCCAGTTACTTAATAACTTCCAAGTTTCTGAGCACCATTATGGAAATTTCAATTTAGAAATTCCATCTACATCATGGCCAGGACATGAATCCACAATAGTGAGCATGAATAGCAGTTCACATTTTCCTCAAAATGCTGATAATAGTAACACTGATGTTTTTAGTTTTTCACAAAGTAGCTCCATTTCTGATACTAGCAATAAATTTCATAATACAAATGGTGGTAACATCTGTTTGAATGATCATGTAGCCAACATTGGCTACATGAATGCCAATTTTAGCACTTATAGTGTTCAAGGTCATGACAGCCAACAGATAACTGAAAACACTTCTGAAGAGTTTGGTAAAGATGTTTTGGAATCCGCGAAAGAGTGTATCAAGAACAACCTGGAAAAATCAGGAAAAAGATCTAGGAGCTCGATGAAGGTAGGACAACAAATATCACGTTTTTCTTTGTAAATTACTCCCTCTGGTATTATGTATAAGAAAAAAGGTGCGTGTGTTGGTCTAAATTTAGACCAAATACATGTTTCTATTTGTTTACATTTAAGACCGGAGGGAGTAAGTCACTTCCTGCTTTTTTTATAGTCCTGGTGATATTGTGACAAGCATTTGGTTTTCTAGAAGAATTGATTCAATGTGTTTAATTTTGTCTGGCTCTCATCATGATTTGATAATTTTGATTTAATGATTCCATAGGTACAAAAGAACAAGAGAAATGTGAAATCTAGGAAGAAACCAAAGTCGGAGTTCAAAAGCAACGCTGACGAGGATGAAAGTCATGATCTTCAGGAGCAGAATTTGAGCTCGGAGGATGATGATATCAATGCTTTAAAGAAGCTAAATGCAGGAACATCTTCAATCTTGAACCAGAATGATTCAACAGATTTGAAGTTAAAGGGAAAATCAAAATGTAATGGAGGTTCTGCCTCTGATCCACAAGGTGTCTATGCAAAAGTATGTCTGCCAATTGCATTTCCTAAAAATACCATTGCTAATAATTTTATGTCCTTGAATTTTTGTCCAAAGTACTGTGATTTTGAATTATTAAAGGATTAGATCTCAAGAGATTTTCATTTTGCAAAATGCAGAAAAGAAGAGAAAGAATAAATGAAAGATTGAAAATCCTGCAAAGCCTAGTCCCTAATGGAACCAAGGTAGCTTTCTCAATGACAATTCAACTATTTTTAAATAATTGGTTAAGATGCTAAAAATATCTAGTTTTCTTACTCATGAAATATAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTGCAATATGTGAAGTTTTTACAGGTCCAAATTAAGGTAAAAACATAAGGATCCTCATTCCTCCTTAGGCCTTGATATGAATCATAAATTTAGTTCAGTGCAAAAAAAATATCCATATTATATATTCTTGAAATATTGAGACTAATTTGTGCTTGTTCATATTTTGATTTGAAATGAACAGCTTCTGAGCTCTGATGATCACTGGATGTATGCTCCAATTGCTTACAATGGAATGAACATTGGACTAAACCTCAACATTATCCCAACCGAACTACCATAG
Protein sequence

>MS.gene96689.t1

MDSGEQSCEEWSSLSGFYTAEEADFMGQLLNNFQVSEHHYGNFNLEIPSTSWPGHESTIVSMNSSSHFPQNADNSNTDVFSFSQSSSISDTSNKFHNTNGGNICLNDHVANIGYMNANFSTYSVQGHDSQQITENTSEEFGKDVLESAKECIKNNLEKSGKRSRSSMKVQKNKRNVKSRKKPKSEFKSNADEDESHDLQEQNLSSEDDDINALKKLNAGTSSILNQNDSTDLKLKGKSKCNGGSASDPQGVYAKKRRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLQVQIKLLSSDDHWMYAPIAYNGMNIGLNLNIIPTELP