Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96710.t1 | RVW21903.1 | 27.8 | 1185 | 255 | 10 | 11 | 598 | 62 | 1242 | 2.80E-110 | 409.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96710.t1 | Q6Z2G9 | 55.7 | 174 | 67 | 4 | 625 | 791 | 84 | 254 | 5.5e-46 | 187.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96710.t1 | A0A438CFA8 | 27.8 | 1185 | 255 | 10 | 11 | 598 | 62 | 1242 | 2.0e-110 | 409.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene96710.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96710.t1 | MTR_5g020580 | 82.081 | 173 | 23 | 2 | 625 | 791 | 71 | 241 | 8.56e-89 | 286 |
| MS.gene96710.t1 | MTR_8g077195 | 61.494 | 174 | 59 | 2 | 624 | 791 | 68 | 239 | 1.56e-65 | 224 |
| MS.gene96710.t1 | MTR_8g077620 | 55.429 | 175 | 65 | 4 | 624 | 791 | 67 | 235 | 3.47e-53 | 189 |
| MS.gene96710.t1 | MTR_8g077675 | 52.571 | 175 | 71 | 4 | 624 | 791 | 63 | 232 | 1.50e-51 | 185 |
| MS.gene96710.t1 | MTR_1g022370 | 50.847 | 177 | 76 | 4 | 624 | 791 | 85 | 259 | 5.64e-47 | 173 |
| MS.gene96710.t1 | MTR_2g007930 | 51.412 | 177 | 73 | 6 | 625 | 791 | 70 | 243 | 1.53e-43 | 163 |
| MS.gene96710.t1 | MTR_2g020280 | 50.289 | 173 | 78 | 2 | 625 | 791 | 55 | 225 | 2.02e-43 | 162 |
| MS.gene96710.t1 | MTR_1g098790 | 50.286 | 175 | 76 | 5 | 625 | 791 | 69 | 240 | 2.80e-43 | 163 |
| MS.gene96710.t1 | MTR_2g076200 | 46.386 | 166 | 81 | 2 | 627 | 786 | 60 | 223 | 4.12e-39 | 149 |
| MS.gene96710.t1 | MTR_1g088960 | 46.429 | 168 | 81 | 3 | 625 | 786 | 66 | 230 | 5.34e-36 | 141 |
| MS.gene96710.t1 | MTR_2g076210 | 42.857 | 168 | 83 | 3 | 631 | 791 | 59 | 220 | 6.96e-34 | 134 |
| MS.gene96710.t1 | MTR_8g077640 | 52.632 | 152 | 43 | 4 | 624 | 751 | 110 | 256 | 1.05e-33 | 134 |
| MS.gene96710.t1 | MTR_0210s0010 | 69.792 | 96 | 23 | 1 | 646 | 741 | 9 | 98 | 1.45e-33 | 124 |
| MS.gene96710.t1 | MTR_2g020280 | 51.613 | 124 | 58 | 1 | 668 | 791 | 5 | 126 | 1.82e-28 | 116 |
| MS.gene96710.t1 | MTR_8g077650 | 45.000 | 160 | 63 | 8 | 624 | 779 | 30 | 168 | 1.55e-26 | 112 |
| MS.gene96710.t1 | MTR_1g023800 | 42.373 | 118 | 55 | 2 | 605 | 709 | 41 | 158 | 9.13e-22 | 93.2 |
| MS.gene96710.t1 | MTR_0479s0040 | 68.571 | 70 | 16 | 1 | 662 | 731 | 12 | 75 | 2.73e-21 | 89.0 |
| MS.gene96710.t1 | MTR_2g103820 | 66.667 | 57 | 19 | 0 | 14 | 70 | 17 | 73 | 2.99e-16 | 74.3 |
| MS.gene96710.t1 | MTR_8g059225 | 39.175 | 97 | 56 | 1 | 502 | 598 | 74 | 167 | 9.63e-16 | 76.3 |
| MS.gene96710.t1 | MTR_6g472230 | 36.792 | 106 | 65 | 1 | 501 | 606 | 70 | 173 | 6.60e-13 | 73.2 |
| MS.gene96710.t1 | MTR_3g093120 | 31.000 | 100 | 66 | 2 | 499 | 598 | 388 | 484 | 1.36e-11 | 68.2 |
| MS.gene96710.t1 | MTR_3g448730 | 35.955 | 89 | 54 | 1 | 518 | 606 | 102 | 187 | 4.22e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96710.t1 | AT2G18280 | 54.913 | 173 | 67 | 3 | 625 | 791 | 64 | 231 | 1.00e-53 | 191 |
| MS.gene96710.t1 | AT2G18280 | 54.913 | 173 | 67 | 3 | 625 | 791 | 64 | 231 | 1.00e-53 | 191 |
| MS.gene96710.t1 | AT1G76900 | 49.438 | 178 | 76 | 5 | 625 | 791 | 73 | 247 | 9.00e-42 | 159 |
| MS.gene96710.t1 | AT1G76900 | 49.438 | 178 | 76 | 5 | 625 | 791 | 73 | 247 | 9.00e-42 | 159 |
| MS.gene96710.t1 | AT1G76900 | 49.438 | 178 | 76 | 5 | 625 | 791 | 73 | 247 | 9.00e-42 | 159 |
| MS.gene96710.t1 | AT2G47900 | 42.152 | 223 | 106 | 5 | 590 | 791 | 20 | 240 | 2.18e-41 | 157 |
| MS.gene96710.t1 | AT1G25280 | 52.000 | 175 | 76 | 3 | 625 | 791 | 75 | 249 | 2.27e-41 | 157 |
| MS.gene96710.t1 | AT2G47900 | 42.342 | 222 | 106 | 5 | 590 | 791 | 20 | 239 | 3.26e-41 | 156 |
| MS.gene96710.t1 | AT2G47900 | 42.342 | 222 | 106 | 5 | 590 | 791 | 20 | 239 | 3.26e-41 | 156 |
| MS.gene96710.t1 | AT1G47270 | 48.171 | 164 | 68 | 4 | 625 | 781 | 60 | 213 | 7.74e-41 | 155 |
| MS.gene96710.t1 | AT1G47270 | 48.171 | 164 | 68 | 4 | 625 | 781 | 84 | 237 | 1.21e-40 | 155 |
| MS.gene96710.t1 | AT1G47270 | 48.171 | 164 | 68 | 4 | 625 | 781 | 85 | 238 | 1.30e-40 | 155 |
| MS.gene96710.t1 | AT1G53320 | 45.665 | 173 | 86 | 2 | 625 | 791 | 60 | 230 | 6.62e-40 | 152 |
| MS.gene96710.t1 | AT1G43640 | 44.318 | 176 | 86 | 5 | 625 | 791 | 5 | 177 | 1.28e-38 | 147 |
| MS.gene96710.t1 | AT1G43640 | 44.318 | 176 | 86 | 5 | 625 | 791 | 71 | 243 | 3.98e-38 | 148 |
| MS.gene96710.t1 | AT3G06380 | 48.503 | 167 | 74 | 4 | 631 | 791 | 56 | 216 | 1.57e-37 | 145 |
| MS.gene96710.t1 | AT5G18680 | 47.305 | 167 | 79 | 2 | 631 | 791 | 62 | 225 | 5.97e-35 | 137 |
| MS.gene96710.t1 | AT5G18680 | 46.154 | 130 | 67 | 1 | 662 | 791 | 7 | 133 | 2.88e-23 | 101 |
| MS.gene96710.t1 | AT3G06380 | 46.032 | 126 | 62 | 3 | 666 | 791 | 5 | 124 | 4.32e-23 | 100 |
| MS.gene96710.t1 | AT4G23160 | 38.947 | 95 | 56 | 1 | 499 | 593 | 453 | 545 | 3.22e-14 | 77.4 |
| MS.gene96710.t1 | AT4G23160 | 38.947 | 95 | 56 | 1 | 499 | 593 | 453 | 545 | 3.22e-14 | 77.4 |
| MS.gene96710.t1 | AT1G61940 | 43.243 | 74 | 36 | 1 | 625 | 692 | 14 | 87 | 4.01e-14 | 73.9 |
| MS.gene96710.t1 | AT1G25280 | 50.704 | 71 | 34 | 1 | 722 | 791 | 1 | 71 | 8.53e-11 | 63.9 |
| MS.gene96710.t1 | AT1G25280 | 50.704 | 71 | 34 | 1 | 722 | 791 | 1 | 71 | 8.53e-11 | 63.9 |
Find 151 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTCAGGTCTAACATTT+TGG | 0.098131 | 3.3:-26902392 | MS.gene96710:CDS |
| TCTTTAGCATTGTCACTTTC+TGG | 0.100423 | 3.3:+26908977 | None:intergenic |
| TTTAAGTCAACCTTCTTTAA+AGG | 0.152993 | 3.3:-26908497 | MS.gene96710:CDS |
| ACTATTAGTGGTTTCTTTAT+TGG | 0.165780 | 3.3:-26907270 | MS.gene96710:CDS |
| CTCCTACTGGACCGGCTATT+TGG | 0.181607 | 3.3:+26902310 | None:intergenic |
| TTAAAGAAGGTTGACTTAAA+AGG | 0.215059 | 3.3:+26908500 | None:intergenic |
| TCTGCGTATCTATTGTATTA+TGG | 0.232029 | 3.3:-26902547 | MS.gene96710:CDS |
| CCAGTAGGAGATTTCTTTCT+AGG | 0.241845 | 3.3:-26902297 | MS.gene96710:CDS |
| TCATCATGATGACAAGAAAA+AGG | 0.257927 | 3.3:-26908558 | MS.gene96710:CDS |
| TTCTGGAATGCTTTGCCTAA+TGG | 0.271439 | 3.3:+26908994 | None:intergenic |
| GACTTAAAAGGTTTCTTATT+AGG | 0.273757 | 3.3:+26908512 | None:intergenic |
| TCCTATTTCGTTAAATCAGC+TGG | 0.277516 | 3.3:-26902620 | MS.gene96710:CDS |
| TGAGGACTGGAAAGATTCTT+TGG | 0.303057 | 3.3:-26909176 | MS.gene96710:CDS |
| GAGACGTAACCGCACTCTTA+TGG | 0.313492 | 3.3:-26907520 | MS.gene96710:CDS |
| TGGCTGGAGGAGCCATTTCT+TGG | 0.323552 | 3.3:-26905681 | MS.gene96710:CDS |
| AACCTTGCTGCTTCCACCTC+TGG | 0.339309 | 3.3:-26908620 | MS.gene96710:CDS |
| CTCCACAGTTTGACGTTATG+AGG | 0.342172 | 3.3:-26908745 | MS.gene96710:CDS |
| TAGGCTCTGGAATATCATTA+TGG | 0.346156 | 3.3:+26907009 | None:intergenic |
| CGATCTTCTTCAAGAGTAAC+TGG | 0.350021 | 3.3:+26907126 | None:intergenic |
| TTCTTTATTGGTTATAGTGT+GGG | 0.353298 | 3.3:-26907258 | MS.gene96710:CDS |
| CGTCAACCTTCCACACTCTT+CGG | 0.358084 | 3.3:+26902645 | None:intergenic |
| CACAGACTTAATCATATCTA+TGG | 0.360821 | 3.3:-26902455 | MS.gene96710:CDS |
| GTCAACCTTCCACACTCTTC+GGG | 0.361120 | 3.3:+26902646 | None:intergenic |
| CCAGGCACTCCTCAACAAAA+TGG | 0.361895 | 3.3:-26907552 | MS.gene96710:CDS |
| CATGATGATACTTTCCTTTG+TGG | 0.362796 | 3.3:+26908573 | None:intergenic |
| TGCAAGTATTGCAAGAAGTT+TGG | 0.365894 | 3.3:-26908470 | MS.gene96710:CDS |
| CCCAGCTGATTTAACGAAAT+AGG | 0.367273 | 3.3:+26902619 | None:intergenic |
| TAGAAGAGACTGAGACTTCT+TGG | 0.372030 | 3.3:-26902729 | MS.gene96710:CDS |
| CTAGATCTGAAGACTATTAG+TGG | 0.376493 | 3.3:-26907282 | MS.gene96710:CDS |
| CTCCAATAGGGTGTGTCTTA+AGG | 0.377301 | 3.3:-26909041 | MS.gene96710:CDS |
| TAGTTATATGCTTGAACTCT+TGG | 0.377661 | 3.3:+26902265 | None:intergenic |
| GACCTTAAGACACACCCTAT+TGG | 0.381812 | 3.3:+26909039 | None:intergenic |
| TTCTTTGGGGAGATGCCTTA+AGG | 0.385632 | 3.3:-26907455 | MS.gene96710:CDS |
| TTTAACACTCTTCCAAGAAA+TGG | 0.388400 | 3.3:+26905669 | None:intergenic |
| GAAGTAGACTTTCGGTCGTC+AGG | 0.399306 | 3.3:+26905721 | None:intergenic |
| GCCTATTGATGTTGATGAAC+CGG | 0.405351 | 3.3:-26906991 | MS.gene96710:CDS |
| GCTTTCAACAACTTTGAAAC+GGG | 0.410044 | 3.3:+26905555 | None:intergenic |
| AAACATGTACCTGTCATTGC+TGG | 0.418349 | 3.3:+26910624 | None:intergenic |
| AAAAGTGGGAAACCTCCAAT+AGG | 0.423808 | 3.3:-26909054 | MS.gene96710:CDS |
| CTTGCATTCTCCTTTAAAGA+AGG | 0.427443 | 3.3:+26908487 | None:intergenic |
| TTACCCATCAAAAGCTCATA+AGG | 0.428840 | 3.3:+26907381 | None:intergenic |
| GCATCTCCCCAAAGAAAATC+AGG | 0.430769 | 3.3:+26907462 | None:intergenic |
| CCCGGTTCATCAACATCAAT+AGG | 0.436713 | 3.3:+26906990 | None:intergenic |
| CTCCGATACAATGCTTCATC+AGG | 0.436765 | 3.3:-26902585 | MS.gene96710:CDS |
| TGCTTTCAACAACTTTGAAA+CGG | 0.438354 | 3.3:+26905554 | None:intergenic |
| CAAGAAGTTTGGTCATAAGA+TGG | 0.442882 | 3.3:-26908459 | MS.gene96710:CDS |
| TTTCTTTATTGGTTATAGTG+TGG | 0.445956 | 3.3:-26907259 | MS.gene96710:CDS |
| ATATGAGCAATTCAGCTCAT+AGG | 0.446313 | 3.3:+26902226 | None:intergenic |
| GTGCTCCTGTGTGTGAATCA+TGG | 0.450066 | 3.3:-26902699 | MS.gene96710:CDS |
| TTGGTGAAAGTACTTTGATC+TGG | 0.452717 | 3.3:-26908787 | MS.gene96710:CDS |
| AGGCAACCTCCACATGGATC+TGG | 0.456221 | 3.3:-26902340 | MS.gene96710:CDS |
| AATATAGACAGCAGTCCTTA+AGG | 0.457387 | 3.3:+26907440 | None:intergenic |
| GATGCATTGGTAAGGGCAGC+AGG | 0.459361 | 3.3:+26909103 | None:intergenic |
| AGCTCTGTGAAAACTCTGAA+TGG | 0.463099 | 3.3:-26909208 | MS.gene96710:CDS |
| CTTGACATCCTTTGTGCCAG+AGG | 0.464040 | 3.3:+26908604 | None:intergenic |
| TAGGAGATTTCTTTCTAGGC+AGG | 0.469861 | 3.3:-26902293 | MS.gene96710:CDS |
| AAGTTGTTGAAAGCATATCT+AGG | 0.472176 | 3.3:-26905546 | MS.gene96710:CDS |
| ATATCATCTCCTTGAGTGAC+TGG | 0.472768 | 3.3:+26907053 | None:intergenic |
| AACCGTTCAAGAACAATCAA+TGG | 0.481500 | 3.3:-26904658 | MS.gene96710:CDS |
| AAGGATCTCAAGGTCGAGAT+TGG | 0.481585 | 3.3:-26908806 | MS.gene96710:CDS |
| AAAACACTAAGAGCTCTTCT+CGG | 0.481772 | 3.3:-26905477 | MS.gene96710:CDS |
| GGTTATAGTGTGGGTTCTAG+AGG | 0.485640 | 3.3:-26907249 | MS.gene96710:intron |
| AAACATGTACCTGTCATTGT+TGG | 0.486770 | 3.3:+26904633 | None:intergenic |
| CGTTCCAGCAATGCGTATGT+TGG | 0.488866 | 3.3:-26902415 | MS.gene96710:CDS |
| CCCTCTTGCTGATGGAATAA+CGG | 0.489307 | 3.3:+26904699 | None:intergenic |
| TTCTCTTCCTACAGATAATG+TGG | 0.489569 | 3.3:-26907078 | MS.gene96710:CDS |
| TTAAGCCGGAAGTAGACTTT+CGG | 0.490135 | 3.3:+26905713 | None:intergenic |
| TCATCAACATCAATAGGCTC+TGG | 0.492409 | 3.3:+26906996 | None:intergenic |
| CCTATTTCGTTAAATCAGCT+GGG | 0.495267 | 3.3:-26902619 | MS.gene96710:CDS |
| GAAAATCAGGCAATGAAGAA+TGG | 0.495319 | 3.3:+26907475 | None:intergenic |
| ATACCATGGAGAAGTCCATT+AGG | 0.498674 | 3.3:-26909009 | MS.gene96710:CDS |
| GGGGAAAGCAATGCATCACT+TGG | 0.499136 | 3.3:-26908537 | MS.gene96710:CDS |
| TTTCTTGGCTTTGTCAAAGC+GGG | 0.508811 | 3.3:+26908925 | None:intergenic |
| CCTAGAAAGAAATCTCCTAC+TGG | 0.516235 | 3.3:+26902297 | None:intergenic |
| CTGGGTATCAGTAGATGCAT+TGG | 0.519552 | 3.3:+26909090 | None:intergenic |
| TCACTATATACGACATTGAC+AGG | 0.521151 | 3.3:-26902360 | MS.gene96710:CDS |
| TTGCCTAATGGACTTCTCCA+TGG | 0.521780 | 3.3:+26909006 | None:intergenic |
| TATCAGTAGATGCATTGGTA+AGG | 0.522395 | 3.3:+26909095 | None:intergenic |
| ATCCATTGATTGTTCTTGAA+CGG | 0.524481 | 3.3:+26904656 | None:intergenic |
| AAAGTGGGAAACCTCCAATA+GGG | 0.525098 | 3.3:-26909053 | MS.gene96710:CDS |
| GCTCTGTGAAAACTCTGAAT+GGG | 0.526318 | 3.3:-26909207 | MS.gene96710:CDS |
| ACTCTCTGAGATCGTCTCAA+TGG | 0.526370 | 3.3:+26906948 | None:intergenic |
| CTTAAGACACACCCTATTGG+AGG | 0.526490 | 3.3:+26909042 | None:intergenic |
| AGATGATATACCACCACTGC+AGG | 0.534718 | 3.3:-26907039 | MS.gene96710:CDS |
| TGTAACTGCCCTCTTGCTGA+TGG | 0.535181 | 3.3:+26904691 | None:intergenic |
| GACGACCGAAAGTCTACTTC+CGG | 0.538953 | 3.3:-26905718 | MS.gene96710:CDS |
| GACGAGACTGGAAGAAATCC+AGG | 0.540062 | 3.3:-26907627 | MS.gene96710:CDS |
| TATGGTAGATATGACGAGAC+TGG | 0.544605 | 3.3:-26907639 | MS.gene96710:intron |
| GTATTATGGACTGGTGCCAT+TGG | 0.546205 | 3.3:-26902533 | MS.gene96710:CDS |
| TCTTCAAGAGTAACTGGTCG+TGG | 0.546561 | 3.3:+26907132 | None:intergenic |
| ATACTCTGCCTCCATGGTAG+AGG | 0.548957 | 3.3:+26905630 | None:intergenic |
| TCTGAATGGGACTAACTATG+AGG | 0.550778 | 3.3:-26909194 | MS.gene96710:CDS |
| TAAGGTCATAACTTATACCA+TGG | 0.552037 | 3.3:-26909023 | MS.gene96710:CDS |
| AAAGAAATCTCCTACTGGAC+CGG | 0.552476 | 3.3:+26902302 | None:intergenic |
| GATTGCTATAGTAGTTCAAG+AGG | 0.554130 | 3.3:-26908678 | MS.gene96710:CDS |
| TTTGACAAGACAAAGTATGA+TGG | 0.559751 | 3.3:-26908884 | MS.gene96710:CDS |
| GACATCCTTTGTGCCAGAGG+TGG | 0.560401 | 3.3:+26908607 | None:intergenic |
| TCAATGGATCCAACAATGAC+AGG | 0.561610 | 3.3:-26904642 | MS.gene96710:intron |
| GAAGCTCAATACACTATGCC+AGG | 0.566608 | 3.3:-26907570 | MS.gene96710:CDS |
| AGATATGATTAAGTCTGTGC+CGG | 0.568041 | 3.3:+26902459 | None:intergenic |
| AGCGACATACTCTGCCTCCA+TGG | 0.568701 | 3.3:+26905624 | None:intergenic |
| CGATACAATGCTTCATCAGG+AGG | 0.568935 | 3.3:-26902582 | MS.gene96710:CDS |
| GTGAAAGTACTTTGATCTGG+AGG | 0.569980 | 3.3:-26908784 | MS.gene96710:CDS |
| GTATCTATTGTATTATGGAC+TGG | 0.570769 | 3.3:-26902542 | MS.gene96710:CDS |
| GCACTCTTATGGACATGGTA+AGG | 0.572109 | 3.3:-26907509 | MS.gene96710:CDS |
| AATGTCGTATATAGTGAACT+TGG | 0.574240 | 3.3:+26902366 | None:intergenic |
| ACTGTGGAGGCAGAGATTCA+AGG | 0.578590 | 3.3:+26908759 | None:intergenic |
| CTGGAATTCAACCAAATAGC+CGG | 0.579251 | 3.3:-26902321 | MS.gene96710:CDS |
| TCAATGGATCCAGCAATGAC+AGG | 0.588151 | 3.3:-26910633 | MS.gene96710:intron |
| TGAGAAGCAAGGGGTTCACA+AGG | 0.589389 | 3.3:-26908408 | MS.gene96710:CDS |
| ATGGGACTAACTATGAGGAC+TGG | 0.590595 | 3.3:-26909189 | MS.gene96710:CDS |
| TGCTATAGTAGTTCAAGAGG+AGG | 0.591095 | 3.3:-26908675 | MS.gene96710:CDS |
| CTCCTGATGAAGCATTGTAT+CGG | 0.592254 | 3.3:+26902583 | None:intergenic |
| ATCAGTAGATGCATTGGTAA+GGG | 0.593962 | 3.3:+26909096 | None:intergenic |
| CAATAAGCTGAAGGATCTCA+AGG | 0.594145 | 3.3:-26908816 | MS.gene96710:CDS |
| CTGAACAATCTCTTGTGTAA+CGG | 0.594307 | 3.3:+26902672 | None:intergenic |
| AAGCTACTTGTCAAGCTATG+TGG | 0.594944 | 3.3:-26905594 | MS.gene96710:CDS |
| AAGTAGACTTTCGGTCGTCA+GGG | 0.597064 | 3.3:+26905722 | None:intergenic |
| ATGCGTATGTTGGAAAACTC+AGG | 0.599772 | 3.3:-26902405 | MS.gene96710:CDS |
| AGCAATTCAGCTCATAGGAA+TGG | 0.600877 | 3.3:+26902231 | None:intergenic |
| AATGTGGTTCCAGTCACTCA+AGG | 0.601777 | 3.3:-26907062 | MS.gene96710:CDS |
| TGAAAGTACTTTGATCTGGA+GGG | 0.603722 | 3.3:-26908783 | MS.gene96710:CDS |
| TGCCAGAGGTGGAAGCAGCA+AGG | 0.608462 | 3.3:+26908618 | None:intergenic |
| AGACTCCCGAAGAGTGTGGA+AGG | 0.609764 | 3.3:-26902651 | MS.gene96710:CDS |
| TGCTTCCACCTCTGGCACAA+AGG | 0.610617 | 3.3:-26908612 | MS.gene96710:CDS |
| CCGTTATTCCATCAGCAAGA+GGG | 0.613563 | 3.3:-26904699 | MS.gene96710:CDS |
| TTATCGCAATATATCACAAG+TGG | 0.617220 | 3.3:+26905523 | None:intergenic |
| TCACACACAGGAGCACAAGA+AGG | 0.618611 | 3.3:+26902706 | None:intergenic |
| GCAAGGGGTTCACAAGGCTG+AGG | 0.619641 | 3.3:-26908402 | MS.gene96710:CDS |
| TCCTGTGTGTGAATCATGGA+GGG | 0.620710 | 3.3:-26902695 | MS.gene96710:CDS |
| GCCGTTATTCCATCAGCAAG+AGG | 0.620798 | 3.3:-26904700 | MS.gene96710:CDS |
| CCTATTGATGTTGATGAACC+GGG | 0.621453 | 3.3:-26906990 | MS.gene96710:CDS |
| TAACCGCACTCTTATGGACA+TGG | 0.623272 | 3.3:-26907514 | MS.gene96710:CDS |
| ACTGGAACCACATTATCTGT+AGG | 0.626083 | 3.3:+26907071 | None:intergenic |
| GCACTACTACAATAAGCTGA+AGG | 0.629157 | 3.3:-26908825 | MS.gene96710:CDS |
| CATTGTATCGGAGAATCACA+AGG | 0.642254 | 3.3:+26902595 | None:intergenic |
| GTTCAGACTCCCGAAGAGTG+TGG | 0.642949 | 3.3:-26902655 | MS.gene96710:CDS |
| GCCCTCCATGATTCACACAC+AGG | 0.647670 | 3.3:+26902694 | None:intergenic |
| CTCCTGTGTGTGAATCATGG+AGG | 0.651561 | 3.3:-26902696 | MS.gene96710:CDS |
| ATTGACAGGCAACCTCCACA+TGG | 0.655106 | 3.3:-26902346 | MS.gene96710:CDS |
| AACCAAATAGCCGGTCCAGT+AGG | 0.657951 | 3.3:-26902312 | MS.gene96710:CDS |
| ACAAAGTATGATGGTACAAG+CGG | 0.660812 | 3.3:-26908875 | MS.gene96710:CDS |
| CTCATAACGTCAAACTGTGG+AGG | 0.661069 | 3.3:+26908746 | None:intergenic |
| GTCCTCATAACGTCAAACTG+TGG | 0.661075 | 3.3:+26908743 | None:intergenic |
| TCTTACAGCTACCTCTACCA+TGG | 0.664045 | 3.3:-26905641 | MS.gene96710:CDS |
| GATACAATGCTTCATCAGGA+GGG | 0.667883 | 3.3:-26902581 | MS.gene96710:CDS |
| ACTACTTCAGCTAAATCACC+CGG | 0.674856 | 3.3:+26906972 | None:intergenic |
| TGAATTCCAGATCCATGTGG+AGG | 0.693280 | 3.3:+26902334 | None:intergenic |
| GGTTGAATTCCAGATCCATG+TGG | 0.703182 | 3.3:+26902331 | None:intergenic |
| TACAGCTACCTCTACCATGG+AGG | 0.727309 | 3.3:-26905638 | MS.gene96710:CDS |
| TTACCATGTCCATAAGAGTG+CGG | 0.735594 | 3.3:+26907511 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 26902237 | 26910652 | 26902237 | ID=MS.gene96710 |
| chr3.3 | mRNA | 26902237 | 26910652 | 26902237 | ID=MS.gene96710.t1;Parent=MS.gene96710 |
| chr3.3 | exon | 26910634 | 26910652 | 26910634 | ID=MS.gene96710.t1.exon1;Parent=MS.gene96710.t1 |
| chr3.3 | CDS | 26910634 | 26910652 | 26910634 | ID=cds.MS.gene96710.t1;Parent=MS.gene96710.t1 |
| chr3.3 | exon | 26908395 | 26909241 | 26908395 | ID=MS.gene96710.t1.exon2;Parent=MS.gene96710.t1 |
| chr3.3 | CDS | 26908395 | 26909241 | 26908395 | ID=cds.MS.gene96710.t1;Parent=MS.gene96710.t1 |
| chr3.3 | exon | 26907250 | 26907653 | 26907250 | ID=MS.gene96710.t1.exon3;Parent=MS.gene96710.t1 |
| chr3.3 | CDS | 26907250 | 26907653 | 26907250 | ID=cds.MS.gene96710.t1;Parent=MS.gene96710.t1 |
| chr3.3 | exon | 26906946 | 26907167 | 26906946 | ID=MS.gene96710.t1.exon4;Parent=MS.gene96710.t1 |
| chr3.3 | CDS | 26906946 | 26907167 | 26906946 | ID=cds.MS.gene96710.t1;Parent=MS.gene96710.t1 |
| chr3.3 | exon | 26905447 | 26905748 | 26905447 | ID=MS.gene96710.t1.exon5;Parent=MS.gene96710.t1 |
| chr3.3 | CDS | 26905447 | 26905748 | 26905447 | ID=cds.MS.gene96710.t1;Parent=MS.gene96710.t1 |
| chr3.3 | exon | 26904643 | 26904721 | 26904643 | ID=MS.gene96710.t1.exon6;Parent=MS.gene96710.t1 |
| chr3.3 | CDS | 26904643 | 26904721 | 26904643 | ID=cds.MS.gene96710.t1;Parent=MS.gene96710.t1 |
| chr3.3 | exon | 26902237 | 26902748 | 26902237 | ID=MS.gene96710.t1.exon7;Parent=MS.gene96710.t1 |
| chr3.3 | CDS | 26902237 | 26902748 | 26902237 | ID=cds.MS.gene96710.t1;Parent=MS.gene96710.t1 |
| Gene Sequence |
| Protein sequence |