AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96781

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96781.t1 MTR_4g081870 97.987 149 3 0 1 149 1 149 9.07e-108 308
MS.gene96781.t1 MTR_5g041940 88.732 142 16 0 8 149 2 143 5.27e-96 278
MS.gene96781.t1 MTR_2g093810 70.470 149 42 1 3 149 8 156 3.08e-74 224
MS.gene96781.t1 MTR_7g100990 70.139 144 41 1 8 149 10 153 2.99e-71 217
MS.gene96781.t1 MTR_2157s0010 74.074 135 32 1 3 134 2 136 4.17e-71 215
MS.gene96781.t1 MTR_4g089135 73.846 130 32 1 8 135 14 143 4.02e-70 215
MS.gene96781.t1 MTR_2g080010 72.093 129 34 1 8 134 14 142 1.40e-69 214
MS.gene96781.t1 MTR_7g085220 65.563 151 43 1 8 149 7 157 1.46e-68 211
MS.gene96781.t1 MTR_8g094580 61.111 144 55 1 6 149 4 146 1.62e-63 196
MS.gene96781.t1 MTR_3g088110 62.143 140 52 1 4 143 2 140 1.54e-62 194
MS.gene96781.t1 MTR_2g079990 63.910 133 48 0 9 141 16 148 4.77e-62 194
MS.gene96781.t1 MTR_2g079990 63.910 133 48 0 9 141 16 148 7.62e-62 195
MS.gene96781.t1 MTR_8g059170 61.765 136 52 0 5 140 10 145 5.50e-61 191
MS.gene96781.t1 MTR_3g096920 62.500 136 50 1 8 143 6 140 1.89e-59 186
MS.gene96781.t1 MTR_3g096920 62.500 136 50 1 8 143 6 140 3.60e-59 186
MS.gene96781.t1 MTR_2g064090 57.639 144 57 2 9 150 6 147 6.62e-57 181
MS.gene96781.t1 MTR_6g012670 59.701 134 54 0 1 134 12 145 1.12e-54 174
MS.gene96781.t1 MTR_4g108760 61.240 129 50 0 8 136 16 144 2.88e-54 174
MS.gene96781.t1 MTR_8g467490 63.492 126 44 1 11 134 16 141 1.33e-53 174
MS.gene96781.t1 MTR_6g477900 58.594 128 51 1 9 134 6 133 2.23e-53 169
MS.gene96781.t1 MTR_7g005280 63.636 132 43 2 9 138 15 143 2.43e-53 169
MS.gene96781.t1 MTR_5g040420 62.698 126 45 1 11 134 16 141 3.08e-53 173
MS.gene96781.t1 MTR_6g084430 60.317 126 50 0 9 134 5 130 7.22e-53 170
MS.gene96781.t1 MTR_3g435150 61.719 128 49 0 9 136 16 143 1.35e-52 169
MS.gene96781.t1 MTR_2g078700 60.769 130 49 1 9 136 23 152 4.16e-52 169
MS.gene96781.t1 MTR_6g011860 59.259 135 54 1 1 134 7 141 4.90e-52 170
MS.gene96781.t1 MTR_5g076850 58.088 136 55 1 9 142 6 141 1.23e-51 174
MS.gene96781.t1 MTR_2g062730 55.797 138 57 2 1 134 2 139 1.84e-51 167
MS.gene96781.t1 MTR_1g096430 55.396 139 54 2 9 144 7 140 1.89e-51 167
MS.gene96781.t1 MTR_5g021710 55.814 129 54 1 9 134 8 136 2.92e-51 167
MS.gene96781.t1 MTR_3g070030 58.462 130 54 0 8 137 18 147 3.36e-51 166
MS.gene96781.t1 MTR_4g101680 52.740 146 66 1 4 146 2 147 4.97e-51 166
MS.gene96781.t1 MTR_4g035590 57.037 135 55 1 3 134 2 136 5.13e-51 166
MS.gene96781.t1 MTR_3g064580 59.375 128 50 1 9 134 6 133 8.11e-51 172
MS.gene96781.t1 MTR_1g008740 60.305 131 45 3 9 134 13 141 1.32e-50 165
MS.gene96781.t1 MTR_1g008740 60.305 131 45 3 9 134 27 155 1.33e-50 165
MS.gene96781.t1 MTR_7g085260 57.037 135 54 1 6 136 14 148 1.65e-50 166
MS.gene96781.t1 MTR_4g036030 52.055 146 67 1 4 146 2 147 1.89e-50 164
MS.gene96781.t1 MTR_3g109340 56.522 138 56 2 1 134 12 149 3.36e-50 164
MS.gene96781.t1 MTR_8g076110 54.264 129 56 1 9 134 6 134 3.50e-50 163
MS.gene96781.t1 MTR_3g109340 56.522 138 56 2 1 134 12 149 3.94e-50 164
MS.gene96781.t1 MTR_5g012080 55.072 138 58 2 9 142 7 144 9.92e-49 160
MS.gene96781.t1 MTR_8g024480 49.306 144 70 1 8 148 14 157 1.01e-48 162
MS.gene96781.t1 MTR_3g116070 58.140 129 51 2 9 134 23 151 1.44e-48 160
MS.gene96781.t1 MTR_7g011130 54.745 137 60 1 8 144 18 152 5.27e-48 158
MS.gene96781.t1 MTR_4g134460 56.800 125 53 1 11 134 56 180 9.34e-48 159
MS.gene96781.t1 MTR_6g032770 54.962 131 57 1 8 136 17 147 1.06e-47 158
MS.gene96781.t1 MTR_5g090970 57.480 127 51 1 11 134 20 146 1.95e-47 155
MS.gene96781.t1 MTR_7g097090 52.344 128 59 1 9 134 10 137 3.10e-47 154
MS.gene96781.t1 MTR_5g014300 53.472 144 58 2 9 143 6 149 1.64e-46 154
MS.gene96781.t1 MTR_2g068880 57.364 129 50 2 11 134 24 152 2.09e-46 153
MS.gene96781.t1 MTR_8g099750 55.303 132 55 2 9 138 14 143 2.76e-46 150
MS.gene96781.t1 MTR_1g069805 50.781 128 61 1 9 134 10 137 3.22e-46 151
MS.gene96781.t1 MTR_2g064470 50.746 134 64 1 3 136 5 136 4.80e-46 152
MS.gene96781.t1 MTR_2g068920 57.364 129 50 2 11 134 23 151 4.97e-46 151
MS.gene96781.t1 MTR_7g011120 54.264 129 59 0 8 136 7 135 6.79e-46 152
MS.gene96781.t1 MTR_5g090970 57.480 127 50 2 11 134 20 145 7.48e-46 152
MS.gene96781.t1 MTR_5g069030 58.594 128 51 1 8 133 24 151 1.94e-45 157
MS.gene96781.t1 MTR_1g090720 56.349 126 53 1 9 132 42 167 2.87e-45 154
MS.gene96781.t1 MTR_4g098630 52.817 142 62 2 9 145 6 147 5.65e-45 149
MS.gene96781.t1 MTR_1g097300 50.365 137 66 1 11 145 21 157 5.93e-45 154
MS.gene96781.t1 MTR_3g093040 51.111 135 64 1 1 133 100 234 2.13e-44 148
MS.gene96781.t1 MTR_3g093050 56.693 127 53 1 9 133 22 148 4.84e-44 152
MS.gene96781.t1 MTR_2g086880 56.911 123 52 1 11 132 20 142 5.63e-44 151
MS.gene96781.t1 MTR_3g093050 56.693 127 53 1 9 133 22 148 5.84e-44 152
MS.gene96781.t1 MTR_2g086880 56.911 123 52 1 11 132 20 142 7.22e-44 152
MS.gene96781.t1 MTR_3g098810 56.061 132 52 2 8 135 13 142 9.91e-44 142
MS.gene96781.t1 MTR_3g096140 50.000 128 62 1 9 134 7 134 1.44e-43 145
MS.gene96781.t1 MTR_4g075980 53.543 127 56 1 11 134 17 143 2.59e-43 145
MS.gene96781.t1 MTR_3g098810 56.061 132 52 2 8 135 13 142 3.80e-43 142
MS.gene96781.t1 MTR_3g096140 50.794 126 60 1 11 134 9 134 1.52e-42 144
MS.gene96781.t1 MTR_8g063550 51.163 129 61 1 8 134 5 133 1.25e-41 141
MS.gene96781.t1 MTR_1g090723 49.275 138 66 3 1 135 1 137 1.64e-41 145
MS.gene96781.t1 MTR_1g090723 49.275 138 66 3 1 135 1 137 1.90e-41 145
MS.gene96781.t1 MTR_1g090723 49.275 138 66 3 1 135 1 137 1.93e-41 145
MS.gene96781.t1 MTR_0036s0150 50.758 132 60 3 11 138 7 137 2.50e-41 144
MS.gene96781.t1 MTR_8g063550 51.163 129 61 1 8 134 5 133 3.50e-41 142
MS.gene96781.t1 MTR_8g063550 51.163 129 61 1 8 134 5 133 3.54e-41 142
MS.gene96781.t1 MTR_3g070040 52.800 125 56 1 13 137 12 133 3.65e-38 132
MS.gene96781.t1 MTR_8g093580 48.837 129 64 1 8 134 5 133 7.57e-38 134
MS.gene96781.t1 MTR_8g023840 50.758 132 59 4 6 132 8 138 4.17e-37 131
MS.gene96781.t1 MTR_4g094302 45.312 128 60 2 9 134 11 130 5.77e-37 124
MS.gene96781.t1 MTR_4g094302 45.312 128 60 2 9 134 11 130 2.24e-36 124
MS.gene96781.t1 MTR_8g094580 62.222 90 33 1 60 149 4 92 1.33e-35 123
MS.gene96781.t1 MTR_2g086690 43.537 147 76 3 10 149 5 151 1.36e-34 121
MS.gene96781.t1 MTR_4g052620 43.537 147 77 3 9 149 5 151 2.19e-34 120
MS.gene96781.t1 MTR_3g096140 46.903 113 58 1 24 134 1 113 5.32e-33 119
MS.gene96781.t1 MTR_8g023930 48.062 129 61 4 9 132 24 151 9.47e-33 120
MS.gene96781.t1 MTR_7g105170 41.958 143 76 3 9 144 4 146 4.40e-32 115
MS.gene96781.t1 MTR_8g023900 47.619 126 60 4 12 132 196 320 1.80e-30 114
MS.gene96781.t1 MTR_8g023900 44.961 129 65 4 9 132 12 139 1.64e-29 112
MS.gene96781.t1 MTR_8g023860 46.512 129 63 5 9 132 12 139 3.67e-30 113
MS.gene96781.t1 MTR_8g093790 43.796 137 61 4 1 137 2 122 3.79e-28 102
MS.gene96781.t1 MTR_7g070140 56.962 79 32 1 62 138 17 95 5.58e-25 93.6
MS.gene96781.t1 MTR_8g023880 37.107 159 76 7 1 140 1 154 6.70e-23 91.3
MS.gene96781.t1 MTR_3g096400 36.552 145 79 5 6 144 4 141 2.94e-22 88.2
MS.gene96781.t1 MTR_7g083330 29.221 154 101 5 1 149 10 160 8.34e-19 79.0
MS.gene96781.t1 MTR_7g083360 29.927 137 89 5 3 136 4 136 6.14e-18 75.9
MS.gene96781.t1 MTR_7g083370 29.688 128 84 4 8 132 9 133 2.63e-17 73.9
MS.gene96781.t1 MTR_7g070150 66.667 33 11 0 106 138 9 41 1.79e-11 57.4
MS.gene96781.t1 MTR_7g116460 33.846 130 73 6 15 134 11 137 2.68e-11 59.3
MS.gene96781.t1 MTR_8g102240 32.215 149 77 6 9 134 47 194 5.87e-11 59.7
MS.gene96781.t1 MTR_8g102240 32.215 149 77 6 9 134 47 194 5.87e-11 59.7
MS.gene96781.t1 MTR_4g078875 31.469 143 80 5 9 134 48 189 6.97e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96781.t1 AT1G69490 79.866 149 30 0 1 149 1 149 6.92e-89 260
MS.gene96781.t1 AT1G61110 72.059 136 37 1 8 142 15 150 3.37e-70 214
MS.gene96781.t1 AT3G04070 67.808 146 40 3 9 149 10 153 1.96e-66 205
MS.gene96781.t1 AT3G15510 73.600 125 31 1 13 135 21 145 2.21e-66 206
MS.gene96781.t1 AT3G04070 67.808 146 40 3 9 149 10 153 2.25e-66 206
MS.gene96781.t1 AT1G77450 60.839 143 55 1 1 143 2 143 7.56e-64 196
MS.gene96781.t1 AT1G52890 65.649 131 45 0 5 135 10 140 6.22e-63 196
MS.gene96781.t1 AT3G15500 66.929 127 42 0 9 135 14 140 1.90e-62 194
MS.gene96781.t1 AT4G27410 65.354 127 44 0 9 135 14 140 4.11e-62 193
MS.gene96781.t1 AT1G01720 61.268 142 54 1 8 149 6 146 2.87e-61 191
MS.gene96781.t1 AT5G08790 62.687 134 49 1 9 142 7 139 1.64e-59 186
MS.gene96781.t1 AT1G52880 70.769 130 34 1 13 138 21 150 1.07e-58 185
MS.gene96781.t1 AT5G63790 60.294 136 53 1 9 144 50 184 4.01e-58 183
MS.gene96781.t1 AT5G63790 60.294 136 53 1 9 144 60 194 4.78e-58 183
MS.gene96781.t1 AT4G27410 57.639 144 44 1 9 135 14 157 1.21e-57 182
MS.gene96781.t1 AT3G29035 61.765 136 52 0 1 136 16 151 4.80e-57 181
MS.gene96781.t1 AT5G39610 61.029 136 53 0 1 136 12 147 3.32e-56 177
MS.gene96781.t1 AT2G33480 60.902 133 49 1 9 141 15 144 1.86e-55 175
MS.gene96781.t1 AT2G33480 60.902 133 49 1 9 141 15 144 2.14e-55 175
MS.gene96781.t1 AT5G07680 60.741 135 53 0 2 136 10 144 4.55e-55 176
MS.gene96781.t1 AT5G07680 62.791 129 48 0 8 136 2 130 7.81e-55 175
MS.gene96781.t1 AT3G18400 59.231 130 53 0 9 138 5 134 2.17e-54 174
MS.gene96781.t1 AT5G61430 62.016 129 49 0 8 136 15 143 2.58e-54 174
MS.gene96781.t1 AT5G13180 64.844 128 40 2 9 134 14 138 2.67e-54 171
MS.gene96781.t1 AT3G17730 60.156 128 49 1 9 134 6 133 4.03e-54 171
MS.gene96781.t1 AT5G39820 61.111 126 47 1 11 134 22 147 1.21e-52 170
MS.gene96781.t1 AT3G15170 59.231 130 51 1 9 136 20 149 1.98e-52 169
MS.gene96781.t1 AT2G24430 60.156 128 49 1 9 134 16 143 3.68e-52 168
MS.gene96781.t1 AT2G24430 60.156 128 49 1 9 134 16 143 3.68e-52 168
MS.gene96781.t1 AT1G65910 58.594 128 51 1 9 134 6 133 4.66e-52 174
MS.gene96781.t1 AT2G18060 54.015 137 60 1 1 134 1 137 5.29e-52 169
MS.gene96781.t1 AT2G18060 54.015 137 60 1 1 134 1 137 5.29e-52 169
MS.gene96781.t1 AT4G36160 55.797 138 57 2 1 134 1 138 7.09e-52 169
MS.gene96781.t1 AT4G36160 55.797 138 57 2 1 134 1 138 7.09e-52 169
MS.gene96781.t1 AT4G36160 55.797 138 57 2 1 134 5 142 7.69e-52 169
MS.gene96781.t1 AT5G53950 60.000 130 50 1 9 136 17 146 1.48e-51 168
MS.gene96781.t1 AT4G10350 56.204 137 57 1 1 134 1 137 1.97e-51 167
MS.gene96781.t1 AT1G33280 57.037 135 55 1 3 134 2 136 3.82e-51 165
MS.gene96781.t1 AT1G76420 59.375 128 50 1 9 134 22 149 3.84e-51 166
MS.gene96781.t1 AT5G17260 58.333 132 53 1 9 138 6 137 5.01e-51 169
MS.gene96781.t1 AT1G26870 61.417 127 47 1 9 133 16 142 6.13e-51 167
MS.gene96781.t1 AT1G71930 51.773 141 65 1 1 138 1 141 1.16e-50 164
MS.gene96781.t1 AT1G71930 51.773 141 65 1 1 138 1 141 1.16e-50 164
MS.gene96781.t1 AT5G66300 50.000 144 69 1 1 141 4 147 7.93e-50 161
MS.gene96781.t1 AT3G03200 58.594 128 51 1 9 134 6 133 8.35e-50 166
MS.gene96781.t1 AT1G54330 57.812 128 52 1 9 134 6 133 1.61e-49 161
MS.gene96781.t1 AT5G46590 59.690 129 49 2 9 134 6 134 1.73e-49 160
MS.gene96781.t1 AT3G04060 58.462 130 53 1 8 136 19 148 1.74e-49 162
MS.gene96781.t1 AT5G46590 59.690 129 49 2 9 134 6 134 2.08e-49 160
MS.gene96781.t1 AT5G18270 58.462 130 53 1 8 136 20 149 2.65e-49 161
MS.gene96781.t1 AT2G02450 59.200 125 50 1 11 134 53 177 3.09e-49 162
MS.gene96781.t1 AT2G02450 59.200 125 50 1 11 134 53 177 3.24e-49 163
MS.gene96781.t1 AT2G43000 56.818 132 57 0 11 142 20 151 6.63e-49 158
MS.gene96781.t1 AT1G79580 55.147 136 57 2 9 140 17 152 6.93e-49 161
MS.gene96781.t1 AT1G79580 55.147 136 57 2 9 140 17 152 6.93e-49 161
MS.gene96781.t1 AT1G79580 55.147 136 57 2 9 140 17 152 6.93e-49 161
MS.gene96781.t1 AT1G79580 55.147 136 57 2 9 140 17 152 6.93e-49 161
MS.gene96781.t1 AT1G79580 55.147 136 57 2 9 140 17 152 6.93e-49 161
MS.gene96781.t1 AT5G18270 57.692 130 54 1 8 136 20 149 8.20e-49 160
MS.gene96781.t1 AT1G12260 52.482 141 64 1 9 146 7 147 1.34e-48 159
MS.gene96781.t1 AT1G62700 53.521 142 63 1 8 146 6 147 1.47e-48 161
MS.gene96781.t1 AT1G62700 53.521 142 63 1 8 146 6 147 1.47e-48 161
MS.gene96781.t1 AT5G62380 55.814 129 54 1 9 134 7 135 2.06e-48 159
MS.gene96781.t1 AT5G62380 55.814 129 54 1 9 134 7 135 2.06e-48 159
MS.gene96781.t1 AT1G12260 52.482 141 64 1 9 146 7 147 3.87e-48 160
MS.gene96781.t1 AT3G12977 50.000 134 67 0 3 136 12 145 5.18e-48 156
MS.gene96781.t1 AT1G32770 53.846 130 57 1 8 134 15 144 5.87e-48 158
MS.gene96781.t1 AT4G17980 53.957 139 60 2 9 143 6 144 9.49e-48 155
MS.gene96781.t1 AT4G17980 53.957 139 60 2 9 143 6 144 1.63e-47 155
MS.gene96781.t1 AT2G46770 53.077 130 58 1 8 134 15 144 1.64e-47 157
MS.gene96781.t1 AT4G35580 55.556 135 58 1 1 133 1 135 1.81e-47 160
MS.gene96781.t1 AT4G35580 58.268 127 51 1 9 133 9 135 2.41e-47 160
MS.gene96781.t1 AT4G35580 58.268 127 51 1 9 133 9 135 2.53e-47 160
MS.gene96781.t1 AT3G61910 50.769 130 61 1 8 134 10 139 1.46e-46 154
MS.gene96781.t1 AT2G17040 56.693 127 52 1 11 134 8 134 1.66e-46 152
MS.gene96781.t1 AT1G34180 54.762 126 55 1 11 134 18 143 1.95e-46 156
MS.gene96781.t1 AT1G34190 53.968 126 56 1 11 134 18 143 2.78e-46 158
MS.gene96781.t1 AT1G56010 50.355 141 66 2 2 138 9 149 3.05e-46 153
MS.gene96781.t1 AT3G10480 51.333 150 66 3 3 150 23 167 3.26e-46 156
MS.gene96781.t1 AT1G33060 57.480 127 52 1 9 133 24 150 5.35e-46 158
MS.gene96781.t1 AT1G33060 57.480 127 52 1 9 133 24 150 5.43e-46 158
MS.gene96781.t1 AT4G28530 48.276 145 57 2 8 134 9 153 6.50e-46 153
MS.gene96781.t1 AT3G10480 52.113 142 64 2 3 142 23 162 6.59e-46 155
MS.gene96781.t1 AT1G34180 54.762 126 55 1 11 134 18 143 8.46e-46 157
MS.gene96781.t1 AT3G10500 55.039 129 56 1 9 135 9 137 9.54e-46 156
MS.gene96781.t1 AT3G10490 48.000 150 74 2 3 150 21 168 9.87e-46 149
MS.gene96781.t1 AT5G04410 55.469 128 55 1 9 134 9 136 1.02e-45 157
MS.gene96781.t1 AT5G24590 55.882 136 57 2 1 133 5 140 2.73e-45 154
MS.gene96781.t1 AT2G27300 51.538 130 62 1 9 137 14 143 5.55e-45 150
MS.gene96781.t1 AT3G44290 54.331 127 57 1 11 136 16 142 1.19e-44 146
MS.gene96781.t1 AT5G22290 51.825 137 62 2 1 136 16 149 1.94e-44 149
MS.gene96781.t1 AT1G34180 49.275 138 56 1 11 134 18 155 3.60e-44 150
MS.gene96781.t1 AT1G32510 53.623 138 55 2 9 137 6 143 7.46e-44 145
MS.gene96781.t1 AT3G44290 54.331 127 57 1 11 136 16 142 8.26e-44 147
MS.gene96781.t1 AT3G10490 51.111 135 64 1 3 135 21 155 1.03e-43 149
MS.gene96781.t1 AT1G34180 49.275 138 56 1 11 134 18 155 1.41e-43 151
MS.gene96781.t1 AT3G49530 53.906 128 56 2 9 133 13 140 2.96e-42 145
MS.gene96781.t1 AT3G49530 53.906 128 56 2 9 133 13 140 4.16e-42 145
MS.gene96781.t1 AT3G12910 56.589 129 50 4 11 134 23 150 1.43e-41 140
MS.gene96781.t1 AT3G10480 42.857 175 63 3 3 142 23 195 6.87e-41 143
MS.gene96781.t1 AT5G64060 50.000 128 62 1 9 134 6 133 2.65e-40 138
MS.gene96781.t1 AT5G09330 51.938 129 60 1 8 134 5 133 1.86e-39 139
MS.gene96781.t1 AT5G09330 51.938 129 60 1 8 134 5 133 1.86e-39 139
MS.gene96781.t1 AT5G09330 51.938 129 60 1 8 134 5 133 1.86e-39 139
MS.gene96781.t1 AT5G09330 51.938 129 60 1 8 134 5 133 1.86e-39 139
MS.gene96781.t1 AT5G09330 51.938 129 60 1 8 134 5 133 1.86e-39 139
MS.gene96781.t1 AT1G32870 53.125 128 56 2 9 134 10 135 2.25e-39 139
MS.gene96781.t1 AT1G32870 53.125 128 56 2 9 134 10 135 2.42e-39 139
MS.gene96781.t1 AT1G32870 53.125 128 56 2 9 134 46 171 4.29e-39 139
MS.gene96781.t1 AT5G04395 43.624 149 68 3 2 134 21 169 4.86e-36 123
MS.gene96781.t1 AT5G64530 44.186 129 58 3 8 134 2 118 5.20e-33 114
MS.gene96781.t1 AT5G61430 64.557 79 28 0 58 136 2 80 1.04e-32 117
MS.gene96781.t1 AT5G64530 44.531 128 57 3 9 134 3 118 1.95e-32 114
MS.gene96781.t1 AT4G10350 68.493 73 23 0 62 134 18 90 4.75e-32 115
MS.gene96781.t1 AT4G28530 48.148 108 40 1 8 99 9 116 1.38e-31 115
MS.gene96781.t1 AT2G33480 61.250 80 31 0 62 141 8 87 3.42e-31 111
MS.gene96781.t1 AT3G12977 55.422 83 37 0 54 136 10 92 8.91e-31 110
MS.gene96781.t1 AT5G22380 42.222 135 71 3 8 135 4 138 4.84e-30 109
MS.gene96781.t1 AT1G56010 58.974 78 32 0 61 138 5 82 5.91e-30 109
MS.gene96781.t1 AT3G44350 41.791 134 72 3 8 135 4 137 1.30e-29 105
MS.gene96781.t1 AT4G01550 47.287 129 62 4 12 134 7 135 1.43e-29 112
MS.gene96781.t1 AT3G04420 44.961 129 67 2 8 132 2 130 1.80e-29 108
MS.gene96781.t1 AT3G04420 44.961 129 67 2 8 132 2 130 2.49e-29 109
MS.gene96781.t1 AT3G44350 41.791 134 72 3 8 135 4 137 6.64e-29 106
MS.gene96781.t1 AT1G02230 46.154 130 60 6 10 132 4 130 9.28e-27 103
MS.gene96781.t1 AT4G01520 41.667 132 70 4 10 134 5 136 3.66e-26 100
MS.gene96781.t1 AT4G01540 42.308 130 68 4 12 134 7 136 3.93e-25 99.8
MS.gene96781.t1 AT4G01540 42.308 130 68 4 12 134 7 136 4.28e-25 99.0
MS.gene96781.t1 AT4G01540 42.308 130 68 4 12 134 7 136 5.18e-25 99.4
MS.gene96781.t1 AT4G01540 42.308 130 68 4 12 134 7 136 5.20e-25 99.8
MS.gene96781.t1 AT1G02220 42.636 129 67 3 8 132 2 127 5.51e-25 99.0
MS.gene96781.t1 AT5G14000 37.405 131 78 2 8 136 14 142 1.08e-23 90.9
MS.gene96781.t1 AT1G02250 43.846 130 63 5 10 132 4 130 1.24e-23 94.7
MS.gene96781.t1 AT5G14000 37.405 131 78 2 8 136 14 142 5.37e-23 90.1
MS.gene96781.t1 AT3G56530 34.247 146 93 2 3 145 46 191 1.72e-22 91.3
MS.gene96781.t1 AT1G01010 41.045 134 63 5 12 132 6 136 3.91e-22 91.3
MS.gene96781.t1 AT5G50820 35.766 137 76 4 6 138 14 142 8.21e-22 87.0
MS.gene96781.t1 AT2G43000 58.333 72 30 0 71 142 2 73 1.14e-21 86.7
MS.gene96781.t1 AT3G55210 33.548 155 89 3 3 143 5 159 2.55e-18 79.3
MS.gene96781.t1 AT2G18060 65.306 49 17 0 86 134 1 49 9.40e-18 77.8
MS.gene96781.t1 AT3G10490 57.407 54 23 0 82 135 2 55 2.58e-17 77.4
MS.gene96781.t1 AT3G10490 57.407 54 23 0 82 135 2 55 2.58e-17 77.4
MS.gene96781.t1 AT5G22290 63.265 49 18 0 88 136 2 50 3.85e-16 72.8
MS.gene96781.t1 AT3G04430 35.606 132 71 5 15 133 6 136 2.79e-13 64.7
MS.gene96781.t1 AT5G18300 34.286 140 72 7 13 145 18 144 9.86e-13 62.0
MS.gene96781.t1 AT1G28470 31.081 148 85 5 9 140 77 223 1.09e-12 64.3
MS.gene96781.t1 AT5G56620 32.258 155 73 7 9 134 43 194 3.80e-12 63.2
MS.gene96781.t1 AT5G56620 32.258 155 73 7 9 134 43 194 3.90e-12 63.2
MS.gene96781.t1 AT5G56620 32.258 155 73 7 9 134 43 194 3.96e-12 63.2
MS.gene96781.t1 AT4G29230 32.667 150 76 6 9 134 48 196 8.49e-12 62.0
MS.gene96781.t1 AT4G29230 32.667 150 76 6 9 134 48 196 8.77e-12 62.0
MS.gene96781.t1 AT4G29230 32.667 150 76 6 9 134 47 195 9.38e-12 62.0

Find 45 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGTGGATCAAAGCAAAT+TGG 0.239330 4.3:+28276057 MS.gene96781:CDS
TTTGGGTACTTTCTTTCTCT+TGG 0.269227 4.3:-28275967 None:intergenic
GAGCAACTTTGTCTGGATAT+TGG 0.273149 4.3:+28276007 MS.gene96781:CDS
AATGCAGATAAATCTGAGTT+TGG 0.318833 4.3:+28275919 MS.gene96781:intron
CCAGACAAAGTTGCTCTATT+AGG 0.328673 4.3:-28276000 None:intergenic
CTATTAGGCCTAACCCCATT+TGG 0.336706 4.3:-28275985 None:intergenic
TTGGGTACTTTCTTTCTCTT+GGG 0.351827 4.3:-28275966 None:intergenic
ATGCAGATAAATCTGAGTTT+GGG 0.362021 4.3:+28275920 MS.gene96781:intron
ATGCATGAGTACAGATTGAT+TGG 0.383604 4.3:+28276144 MS.gene96781:CDS
AAAGTGGATCAAAGCAAATT+GGG 0.388567 4.3:+28276058 MS.gene96781:CDS
AATTGGGGTGAAGAAATCTT+TGG 0.390973 4.3:+28276074 MS.gene96781:CDS
TATTAGGCCTAACCCCATTT+GGG 0.396297 4.3:-28275984 None:intergenic
CCTAATAGAGCAACTTTGTC+TGG 0.401002 4.3:+28276000 MS.gene96781:CDS
AAGCAAACTAGCAAGCATAT+TGG 0.410934 4.3:+28276174 MS.gene96781:CDS
GAGAAAGAAAGTACCCAAAT+GGG 0.441206 4.3:+28275971 MS.gene96781:CDS
AATTTATAGATATCAACTTC+AGG 0.444025 4.3:-28275583 None:intergenic
AGAGAAAGAAAGTACCCAAA+TGG 0.452421 4.3:+28275970 MS.gene96781:CDS
CAAAGGGTGTCAAAACTGAT+TGG 0.459054 4.3:+28276118 MS.gene96781:CDS
CTGAGTTTGGGGAGAATGAA+TGG 0.459662 4.3:+28275932 MS.gene96781:CDS
ACAAGCTATGAGCTCCCTCC+TGG 0.472529 4.3:+28275472 MS.gene96781:CDS
ATATCTATAAATTTGATCCA+TGG 0.491707 4.3:+28275593 MS.gene96781:CDS
TCTGGATATTGGAAAGCTAC+TGG 0.494091 4.3:+28276018 MS.gene96781:CDS
ACTTCAGGTATGATAGATGC+AGG 0.501390 4.3:-28275568 None:intergenic
TATCTATAAATTTGATCCAT+GGG 0.513541 4.3:+28275594 MS.gene96781:CDS
TTTGATCCATGGGAATTGCC+TGG 0.520646 4.3:+28275604 MS.gene96781:CDS
TTACAAGGGCAGGCCACCAA+AGG 0.537258 4.3:+28276101 MS.gene96781:CDS
GTTGGATGAAATCTAAAGCC+AGG 0.547592 4.3:-28275490 None:intergenic
TACAAGGGCAGGCCACCAAA+GGG 0.555341 4.3:+28276102 MS.gene96781:CDS
GAAAGTACCCAAATGGGGTT+AGG 0.557007 4.3:+28275977 MS.gene96781:CDS
CAATAAGGGCTTTACCCTCA+TGG 0.561152 4.3:-28276199 None:intergenic
ACAATTAGTTCCTCATCAGT+TGG 0.571272 4.3:-28275508 None:intergenic
TAGATTTCATCCAACTGATG+AGG 0.573387 4.3:+28275498 MS.gene96781:CDS
ACAGACAAGGCAATCAAAAG+TGG 0.595775 4.3:+28276042 MS.gene96781:CDS
TATATACCAGGCAATTCCCA+TGG 0.600939 4.3:-28275610 None:intergenic
GAAAGCTACTGGCACAGACA+AGG 0.610943 4.3:+28276029 MS.gene96781:CDS
GGTATGATAGATGCAGGGCA+TGG 0.629076 4.3:-28275562 None:intergenic
TGCAGATAAATCTGAGTTTG+GGG 0.637040 4.3:+28275921 MS.gene96781:intron
CAAGCATATTGGATCCATGA+GGG 0.642547 4.3:+28276185 MS.gene96781:CDS
TTGATGTAGCTTGATTACAA+AGG 0.644208 4.3:-28275537 None:intergenic
GATGAAATCTAAAGCCAGGA+GGG 0.652933 4.3:-28275486 None:intergenic
AAGTGGATCAAAGCAAATTG+GGG 0.655184 4.3:+28276059 MS.gene96781:CDS
AGAAAGAAAGTACCCAAATG+GGG 0.672302 4.3:+28275972 MS.gene96781:CDS
CTTCAGGTATGATAGATGCA+GGG 0.675202 4.3:-28275567 None:intergenic
GCAAGCATATTGGATCCATG+AGG 0.703211 4.3:+28276184 MS.gene96781:CDS
GGATGAAATCTAAAGCCAGG+AGG 0.707038 4.3:-28275487 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAACACCTAAAATTC+AGG - chr4.3:28276378-28276397 None:intergenic 20.0%
!! AATAAAAATTCACTATGACA+TGG - chr4.3:28276306-28276325 None:intergenic 20.0%
!! AATTTATAGATATCAACTTC+AGG - chr4.3:28275586-28275605 None:intergenic 20.0%
!! ACAAACAAATATAGCAAAAT+AGG - chr4.3:28276226-28276245 None:intergenic 20.0%
!! ATATCTATAAATTTGATCCA+TGG + chr4.3:28275593-28275612 MS.gene96781:CDS 20.0%
!! ATTTATCTGCATTCTATAAT+TGG - chr4.3:28275912-28275931 None:intergenic 20.0%
!! TATCTATAAATTTGATCCAT+GGG + chr4.3:28275594-28275613 MS.gene96781:CDS 20.0%
!! TTACAAAGTATATATATACC+AGG - chr4.3:28275625-28275644 None:intergenic 20.0%
!!! CCATTTTCTCAAATTATTAT+CGG - chr4.3:28275780-28275799 None:intergenic 20.0%
!!! TTCTTTAAATCCTGAATTTT+AGG + chr4.3:28276365-28276384 MS.gene96781:intron 20.0%
! CCGATAATAATTTGAGAAAA+TGG + chr4.3:28275777-28275796 MS.gene96781:intron 25.0%
!!! AAATCTTTGGTCTTTTACAA+GGG + chr4.3:28276087-28276106 MS.gene96781:CDS 25.0%
AAAAGTGGATCAAAGCAAAT+TGG + chr4.3:28276057-28276076 MS.gene96781:CDS 30.0%
AAAGTGGATCAAAGCAAATT+GGG + chr4.3:28276058-28276077 MS.gene96781:CDS 30.0%
AATGCAGATAAATCTGAGTT+TGG + chr4.3:28275919-28275938 MS.gene96781:intron 30.0%
ATAGCAAAATAGGCCAATAA+GGG - chr4.3:28276216-28276235 None:intergenic 30.0%
ATGCAGATAAATCTGAGTTT+GGG + chr4.3:28275920-28275939 MS.gene96781:intron 30.0%
TATAGCAAAATAGGCCAATA+AGG - chr4.3:28276217-28276236 None:intergenic 30.0%
TCTCAAATTATTATCGGTGT+CGG - chr4.3:28275774-28275793 None:intergenic 30.0%
TTGATGTAGCTTGATTACAA+AGG - chr4.3:28275540-28275559 None:intergenic 30.0%
! ACTATGACATGGAAACTTTT+TGG - chr4.3:28276295-28276314 None:intergenic 30.0%
! GCAAAACTGTTTTACATTGA+CGG + chr4.3:28276336-28276355 MS.gene96781:intron 30.0%
!! GAAATCTTTGGTCTTTTACA+AGG + chr4.3:28276086-28276105 MS.gene96781:CDS 30.0%
!!! TGTCTGCTTCGTTTTTTATT+AGG + chr4.3:28275880-28275899 MS.gene96781:intron 30.0%
AAGCAAACTAGCAAGCATAT+TGG + chr4.3:28276174-28276193 MS.gene96781:CDS 35.0%
AAGTGGATCAAAGCAAATTG+GGG + chr4.3:28276059-28276078 MS.gene96781:CDS 35.0%
AATTGGGGTGAAGAAATCTT+TGG + chr4.3:28276074-28276093 MS.gene96781:CDS 35.0%
ACAATTAGTTCCTCATCAGT+TGG - chr4.3:28275511-28275530 None:intergenic 35.0%
ATGCATGAGTACAGATTGAT+TGG + chr4.3:28276144-28276163 MS.gene96781:CDS 35.0%
TAGATTTCATCCAACTGATG+AGG + chr4.3:28275498-28275517 MS.gene96781:CDS 35.0%
TATGATTGACCTTTCCTTTG+TGG + chr4.3:28276419-28276438 MS.gene96781:intron 35.0%
TATGTGTTAGTGACGTGTAT+TGG + chr4.3:28275819-28275838 MS.gene96781:intron 35.0%
TGCAGATAAATCTGAGTTTG+GGG + chr4.3:28275921-28275940 MS.gene96781:intron 35.0%
TTGGGTACTTTCTTTCTCTT+GGG - chr4.3:28275969-28275988 None:intergenic 35.0%
TTTGGGTACTTTCTTTCTCT+TGG - chr4.3:28275970-28275989 None:intergenic 35.0%
!! AGAAAGAAAGTACCCAAATG+GGG + chr4.3:28275972-28275991 MS.gene96781:CDS 35.0%
!! AGAGAAAGAAAGTACCCAAA+TGG + chr4.3:28275970-28275989 MS.gene96781:CDS 35.0%
!! GAGAAAGAAAGTACCCAAAT+GGG + chr4.3:28275971-28275990 MS.gene96781:CDS 35.0%
ACAGACAAGGCAATCAAAAG+TGG + chr4.3:28276042-28276061 MS.gene96781:CDS 40.0%
ACTTCAGGTATGATAGATGC+AGG - chr4.3:28275571-28275590 None:intergenic 40.0%
CAAGCATATTGGATCCATGA+GGG + chr4.3:28276185-28276204 MS.gene96781:CDS 40.0%
CACATACAACCACAAAGGAA+AGG - chr4.3:28276431-28276450 None:intergenic 40.0%
CCAGACAAAGTTGCTCTATT+AGG - chr4.3:28276003-28276022 None:intergenic 40.0%
CCTAATAGAGCAACTTTGTC+TGG + chr4.3:28276000-28276019 MS.gene96781:CDS 40.0%
CTTCAGGTATGATAGATGCA+GGG - chr4.3:28275570-28275589 None:intergenic 40.0%
GAGCAACTTTGTCTGGATAT+TGG + chr4.3:28276007-28276026 MS.gene96781:CDS 40.0%
GATGACACATACAACCACAA+AGG - chr4.3:28276436-28276455 None:intergenic 40.0%
TATATACCAGGCAATTCCCA+TGG - chr4.3:28275613-28275632 None:intergenic 40.0%
TATTAGGCCTAACCCCATTT+GGG - chr4.3:28275987-28276006 None:intergenic 40.0%
TCTGGATATTGGAAAGCTAC+TGG + chr4.3:28276018-28276037 MS.gene96781:CDS 40.0%
! ACGTCTTCAATCTGAAGTGT+CGG + chr4.3:28275844-28275863 MS.gene96781:intron 40.0%
! GATGAAATCTAAAGCCAGGA+GGG - chr4.3:28275489-28275508 None:intergenic 40.0%
! GTTGGATGAAATCTAAAGCC+AGG - chr4.3:28275493-28275512 None:intergenic 40.0%
!! CAAAGGGTGTCAAAACTGAT+TGG + chr4.3:28276118-28276137 MS.gene96781:CDS 40.0%
!! CAATCAGTTTTGACACCCTT+TGG - chr4.3:28276120-28276139 None:intergenic 40.0%
!! TAGATGACTGGGTTTTATGC+AGG + chr4.3:28276459-28276478 MS.gene96781:intron 40.0%
CAATAAGGGCTTTACCCTCA+TGG - chr4.3:28276202-28276221 None:intergenic 45.0%
CATGAGGGTAAAGCCCTTAT+TGG + chr4.3:28276200-28276219 MS.gene96781:intron 45.0%
CTATTAGGCCTAACCCCATT+TGG - chr4.3:28275988-28276007 None:intergenic 45.0%
CTGAGTTTGGGGAGAATGAA+TGG + chr4.3:28275932-28275951 MS.gene96781:CDS 45.0%
GCAAGCATATTGGATCCATG+AGG + chr4.3:28276184-28276203 MS.gene96781:CDS 45.0%
GTGTCATCAGCTAGATGACT+GGG + chr4.3:28276448-28276467 MS.gene96781:intron 45.0%
TGTGTCATCAGCTAGATGAC+TGG + chr4.3:28276447-28276466 MS.gene96781:intron 45.0%
TTTGATCCATGGGAATTGCC+TGG + chr4.3:28275604-28275623 MS.gene96781:CDS 45.0%
! GGATGAAATCTAAAGCCAGG+AGG - chr4.3:28275490-28275509 None:intergenic 45.0%
!! CTTTGGTCTTTTACAAGGGC+AGG + chr4.3:28276091-28276110 MS.gene96781:CDS 45.0%
!! GAAAGTACCCAAATGGGGTT+AGG + chr4.3:28275977-28275996 MS.gene96781:CDS 45.0%
!! TCAGTTTTGACACCCTTTGG+TGG - chr4.3:28276117-28276136 None:intergenic 45.0%
GAAAGCTACTGGCACAGACA+AGG + chr4.3:28276029-28276048 MS.gene96781:CDS 50.0%
GGTATGATAGATGCAGGGCA+TGG - chr4.3:28275565-28275584 None:intergenic 50.0%
ACAAGCTATGAGCTCCCTCC+TGG + chr4.3:28275472-28275491 MS.gene96781:CDS 55.0%
TACAAGGGCAGGCCACCAAA+GGG + chr4.3:28276102-28276121 MS.gene96781:CDS 55.0%
TTACAAGGGCAGGCCACCAA+AGG + chr4.3:28276101-28276120 MS.gene96781:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 28275460 28276489 28275460 ID=MS.gene96781
chr4.3 mRNA 28275460 28276489 28275460 ID=MS.gene96781.t1;Parent=MS.gene96781
chr4.3 exon 28275460 28275625 28275460 ID=MS.gene96781.t1.exon1;Parent=MS.gene96781.t1
chr4.3 CDS 28275460 28275625 28275460 ID=cds.MS.gene96781.t1;Parent=MS.gene96781.t1
chr4.3 exon 28275926 28276206 28275926 ID=MS.gene96781.t1.exon2;Parent=MS.gene96781.t1
chr4.3 CDS 28275926 28276206 28275926 ID=cds.MS.gene96781.t1;Parent=MS.gene96781.t1
chr4.3 exon 28276481 28276489 28276481 ID=MS.gene96781.t1.exon3;Parent=MS.gene96781.t1
chr4.3 CDS 28276481 28276489 28276481 ID=cds.MS.gene96781.t1;Parent=MS.gene96781.t1
Gene Sequence

>MS.gene96781

ATGGAGAGTAGTACAAGCTATGAGCTCCCTCCTGGCTTTAGATTTCATCCAACTGATGAGGAACTAATTGTGCATTACCTTTGTAATCAAGCTACATCAAAGCCATGCCCTGCATCTATCATACCTGAAGTTGATATCTATAAATTTGATCCATGGGAATTGCCTGGTATATATATACTTTGTAACATCTTTTTTCACATAATTTTGTTATATTGCTTAAATATGTATGTATTGCACTTCATAATGTGATCATTTATTTCTACATCTACGAAGCACTAACACATACGTGAATATCATACATGACACTAATACCGACACCGATAATAATTTGAGAAAATGGAAGTAATAGAATGTACAAATATGTGTTAGTGACGTGTATTGGTCACGTCTTCAATCTGAAGTGTCGGTTCTATATAGTTGTGTCTGCTTCGTTTTTTATTAGGTACTAACCAATTATAGAATGCAGATAAATCTGAGTTTGGGGAGAATGAATGGTATTTCTTTAGCCCAAGAGAAAGAAAGTACCCAAATGGGGTTAGGCCTAATAGAGCAACTTTGTCTGGATATTGGAAAGCTACTGGCACAGACAAGGCAATCAAAAGTGGATCAAAGCAAATTGGGGTGAAGAAATCTTTGGTCTTTTACAAGGGCAGGCCACCAAAGGGTGTCAAAACTGATTGGATTATGCATGAGTACAGATTGATTGGATCACAAAAGCAAACTAGCAAGCATATTGGATCCATGAGGGTAAAGCCCTTATTGGCCTATTTTGCTATATTTGTTTGTTACACTGTCAGTGTAAAACAATTTTACATCGACATCTAATAAGATGCCAAAAAGTTTCCATGTCATAGTGAATTTTTATTGAATGTCGATGCAAAACTGTTTTACATTGACGGTGTATATTCTTTAAATCCTGAATTTTAGGTGTTTATTTTGATATGTTTAATGTGTTACTTTATGATTGACCTTTCCTTTGTGGTTGTATGTGTCATCAGCTAGATGACTGGGTTTTATGCAGGATCTATAA
Protein sequence

>MS.gene96781.t1

MESSTSYELPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFGENEWYFFSPRERKYPNGVRPNRATLSGYWKATGTDKAIKSGSKQIGVKKSLVFYKGRPPKGVKTDWIMHEYRLIGSQKQTSKHIGSMRDL