Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96787.t1 | AES89938.1 | 86.4 | 273 | 37 | 0 | 1 | 273 | 1 | 273 | 6.00E-121 | 443.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96787.t1 | Q9FXA3 | 31.9 | 119 | 74 | 3 | 156 | 267 | 183 | 301 | 1.5e-06 | 55.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96787.t1 | G7JG89 | 86.4 | 273 | 37 | 0 | 1 | 273 | 1 | 273 | 4.4e-121 | 443.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene96787.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96787.t1 | MTR_4g081980 | 88.645 | 273 | 31 | 0 | 1 | 273 | 1 | 273 | 2.44e-170 | 471 |
| MS.gene96787.t1 | MTR_4g085660 | 46.205 | 303 | 123 | 9 | 1 | 267 | 1 | 299 | 5.25e-63 | 200 |
| MS.gene96787.t1 | MTR_4g085700 | 45.130 | 308 | 120 | 9 | 1 | 267 | 1 | 300 | 5.85e-58 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96787.t1 | AT1G49770 | 32.000 | 250 | 112 | 5 | 76 | 267 | 52 | 301 | 1.72e-27 | 108 |
Find 41 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCACTGAAATTGCATTT+TGG | 0.191221 | 4.3:+28349693 | None:intergenic |
| TGACTTTAGATGATGATAAA+TGG | 0.249362 | 4.3:-28352071 | MS.gene96787:CDS |
| ACTTCAAATGCACTAGCTTT+TGG | 0.254586 | 4.3:-28350842 | MS.gene96787:CDS |
| AGCTAGCAGCAGGAGAAATT+AGG | 0.262683 | 4.3:-28349661 | MS.gene96787:CDS |
| TTCATCTCCGCAAATGTTAA+AGG | 0.277405 | 4.3:+28350793 | None:intergenic |
| AATGGTTCTTTGTTCTCATT+TGG | 0.286563 | 4.3:+28351991 | None:intergenic |
| GCTAGCAGCAGGAGAAATTA+GGG | 0.304341 | 4.3:-28349660 | MS.gene96787:CDS |
| CTCATTGATTCAATGTCTAA+TGG | 0.319505 | 4.3:+28351973 | None:intergenic |
| AACATCTTGTCCAATGATAA+TGG | 0.323511 | 4.3:-28350677 | MS.gene96787:CDS |
| GTAGCTGTTTCCATTATCAT+TGG | 0.365138 | 4.3:+28350667 | None:intergenic |
| CACATTGCTTCTTATTCACT+AGG | 0.390758 | 4.3:+28351923 | None:intergenic |
| ATTTGAAACTTACATGGGCT+TGG | 0.392532 | 4.3:+28350639 | None:intergenic |
| AAAATTGTTGTCAACAAGCT+TGG | 0.434592 | 4.3:+28350740 | None:intergenic |
| AATGTTACCTTTAACATTTG+CGG | 0.450475 | 4.3:-28350800 | MS.gene96787:CDS |
| GATTCCTCATCTTACTTACA+AGG | 0.453723 | 4.3:-28351746 | MS.gene96787:intron |
| ATTTGGTTTATCAGAAATGA+AGG | 0.457704 | 4.3:+28352008 | None:intergenic |
| AAAACAAACTCTAGAAAAGC+TGG | 0.462688 | 4.3:-28350951 | MS.gene96787:CDS |
| AATGAGCCAAAATGTAGAAA+AGG | 0.465109 | 4.3:-28351956 | MS.gene96787:CDS |
| GATAAGGGAAAAGATAGAAA+TGG | 0.474599 | 4.3:-28351856 | MS.gene96787:CDS |
| ATGTGTGAAAATCAATCATC+GGG | 0.496092 | 4.3:-28352033 | MS.gene96787:CDS |
| TAAGAAGCAATGTGAGGGAG+GGG | 0.496799 | 4.3:-28351914 | MS.gene96787:CDS |
| ATGCACTTGCTGAGAGAGAA+AGG | 0.498912 | 4.3:-28351810 | MS.gene96787:CDS |
| ATTATCATTGGACAAGATGT+TGG | 0.503413 | 4.3:+28350679 | None:intergenic |
| GAAAGTTACAAGCTAGCAGC+AGG | 0.519236 | 4.3:-28349671 | MS.gene96787:CDS |
| AATAAGAAGCAATGTGAGGG+AGG | 0.525488 | 4.3:-28351916 | MS.gene96787:CDS |
| ACATTGCTTCTTATTCACTA+GGG | 0.529713 | 4.3:+28351924 | None:intergenic |
| TTTGGTTTATCAGAAATGAA+GGG | 0.532763 | 4.3:+28352009 | None:intergenic |
| CATGTGTGAAAATCAATCAT+CGG | 0.538236 | 4.3:-28352034 | MS.gene96787:CDS |
| TTTATCATCATCTAAAGTCA+TGG | 0.573233 | 4.3:+28352074 | None:intergenic |
| ATAAGAAGCAATGTGAGGGA+GGG | 0.586200 | 4.3:-28351915 | MS.gene96787:CDS |
| TTGGTTTATCAGAAATGAAG+GGG | 0.597449 | 4.3:+28352010 | None:intergenic |
| TTTACCTTGTAAGTAAGATG+AGG | 0.598129 | 4.3:+28351742 | None:intergenic |
| CTTCACTGCTTCCTCCACAA+TGG | 0.599469 | 4.3:+28350988 | None:intergenic |
| GTGAATAAGAAGCAATGTGA+GGG | 0.611245 | 4.3:-28351919 | MS.gene96787:CDS |
| CCAAAATGCAATTTCAGTGG+AGG | 0.613831 | 4.3:-28349693 | MS.gene96787:CDS |
| AAGCCAAAATGCAATTTCAG+TGG | 0.614102 | 4.3:-28349696 | MS.gene96787:CDS |
| GGTAGATTCTGTAACCATTG+TGG | 0.628284 | 4.3:-28351002 | MS.gene96787:CDS |
| CTAGCAGCAGGAGAAATTAG+GGG | 0.636230 | 4.3:-28349659 | MS.gene96787:CDS |
| AGATTCTGTAACCATTGTGG+AGG | 0.646571 | 4.3:-28350999 | MS.gene96787:CDS |
| AGTGAATAAGAAGCAATGTG+AGG | 0.680971 | 4.3:-28351920 | MS.gene96787:CDS |
| CACTTGCTGAGAGAGAAAGG+AGG | 0.730053 | 4.3:-28351807 | MS.gene96787:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAAAAAAAAAAAAGT+TGG | + | chr4.3:28351788-28351807 | None:intergenic | 10.0% |
| !! | TTAAATGTTAAAAATGATAA+GGG | - | chr4.3:28349850-28349869 | MS.gene96787:intron | 10.0% |
| !! | TTTAAATGTTAAAAATGATA+AGG | - | chr4.3:28349849-28349868 | MS.gene96787:intron | 10.0% |
| !!! | TTTATTTCTAATCAATTTAT+CGG | - | chr4.3:28350271-28350290 | MS.gene96787:intron | 10.0% |
| !! | TCAAAAAATATATATCTGAA+AGG | + | chr4.3:28350140-28350159 | None:intergenic | 15.0% |
| !! | TGATTAGAAATAAAAAAAGT+TGG | + | chr4.3:28350265-28350284 | None:intergenic | 15.0% |
| !! | TTATATGAAAAGAGATTAAT+CGG | + | chr4.3:28350588-28350607 | None:intergenic | 15.0% |
| !!! | ACAAAATTTTCATTGAAAAA+TGG | + | chr4.3:28350050-28350069 | None:intergenic | 15.0% |
| !!! | ACCTTAGTAATTTAAAATTT+AGG | + | chr4.3:28350468-28350487 | None:intergenic | 15.0% |
| !!! | ATTACATTCATTTTTAAGAT+TGG | - | chr4.3:28350005-28350024 | MS.gene96787:intron | 15.0% |
| !!! | ATTGAGTTTTTCATTTTTTT+TGG | + | chr4.3:28351890-28351909 | None:intergenic | 15.0% |
| !!! | TGCTTTGTTTTAAAAAATTT+TGG | - | chr4.3:28350694-28350713 | MS.gene96787:CDS | 15.0% |
| !! | CAGATTTAAACTTTGAATAA+TGG | + | chr4.3:28351244-28351263 | None:intergenic | 20.0% |
| !! | GCTTTAACTAAATTCAAATA+TGG | - | chr4.3:28350403-28350422 | MS.gene96787:intron | 20.0% |
| !! | TTAATACAACAAAAAAAGGT+CGG | - | chr4.3:28350512-28350531 | MS.gene96787:intron | 20.0% |
| !!! | AATTGAATTTGAAACTTACA+TGG | + | chr4.3:28351091-28351110 | None:intergenic | 20.0% |
| !!! | ATAAACTTTAGGTTTGTTTA+CGG | + | chr4.3:28351716-28351735 | None:intergenic | 20.0% |
| !!! | ATTGAATTTGAAACTTACAT+GGG | + | chr4.3:28351090-28351109 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTTCTTTGTACTA+TGG | - | chr4.3:28350229-28350248 | MS.gene96787:intron | 20.0% |
| !!! | GCCTAAATTTTAAATTACTA+AGG | - | chr4.3:28350464-28350483 | MS.gene96787:intron | 20.0% |
| !!! | TAGTAATTTAAAATTTAGGC+CGG | + | chr4.3:28350464-28350483 | None:intergenic | 20.0% |
| !!! | TTGTTTTAAAAAATTTTGGC+AGG | - | chr4.3:28350698-28350717 | MS.gene96787:CDS | 20.0% |
| ! | AATGTTACCTTTAACATTTG+CGG | - | chr4.3:28350921-28350940 | MS.gene96787:CDS | 25.0% |
| ! | AGATTAATCGGTAAGAAATA+GGG | + | chr4.3:28350576-28350595 | None:intergenic | 25.0% |
| ! | ATTAAATCAATGTTACACCT+AGG | + | chr4.3:28350666-28350685 | None:intergenic | 25.0% |
| ! | CGGATTAATACAACAAAAAA+AGG | - | chr4.3:28350508-28350527 | MS.gene96787:intron | 25.0% |
| ! | TAATACAACAAAAAAAGGTC+GGG | - | chr4.3:28350513-28350532 | MS.gene96787:intron | 25.0% |
| ! | TGACTTTAGATGATGATAAA+TGG | - | chr4.3:28349650-28349669 | MS.gene96787:CDS | 25.0% |
| ! | TTATTTCATTATCCACAATG+TGG | - | chr4.3:28351945-28351964 | MS.gene96787:CDS | 25.0% |
| !! | ATCAAAATTGAATCGATTCA+TGG | + | chr4.3:28350372-28350391 | None:intergenic | 25.0% |
| !! | ATTTGGTTTATCAGAAATGA+AGG | + | chr4.3:28349716-28349735 | None:intergenic | 25.0% |
| !! | CATGGATCTTTATTTAAGAA+AGG | - | chr4.3:28351545-28351564 | MS.gene96787:intron | 25.0% |
| !! | CATTTCTTTTGACAAAAAAG+AGG | - | chr4.3:28351355-28351374 | MS.gene96787:intron | 25.0% |
| !! | TAAACTTTAGGTTTGTTTAC+GGG | + | chr4.3:28351715-28351734 | None:intergenic | 25.0% |
| !! | TTAGCAAAATACTTTTCTTC+TGG | + | chr4.3:28351753-28351772 | None:intergenic | 25.0% |
| !! | TTTATCATCATCTAAAGTCA+TGG | + | chr4.3:28349650-28349669 | None:intergenic | 25.0% |
| !! | TTTGGTTTATCAGAAATGAA+GGG | + | chr4.3:28349715-28349734 | None:intergenic | 25.0% |
| !!! | AAAATAATTTTGACTACCTC+CGG | - | chr4.3:28350442-28350461 | MS.gene96787:intron | 25.0% |
| !!! | ATGAATCGATTCAATTTTGA+TGG | - | chr4.3:28350371-28350390 | MS.gene96787:intron | 25.0% |
| !!! | TGTCATGAAAAGTTTTATTG+CGG | - | chr4.3:28351572-28351591 | MS.gene96787:intron | 25.0% |
| !!! | TTTTTGTTGTATTAATCCGT+TGG | + | chr4.3:28350507-28350526 | None:intergenic | 25.0% |
| AAAATTGTTGTCAACAAGCT+TGG | + | chr4.3:28350984-28351003 | None:intergenic | 30.0% | |
| AAAGTTTATCCTTTGACTAC+TGG | - | chr4.3:28351727-28351746 | MS.gene96787:intron | 30.0% | |
| AACATCTTGTCCAATGATAA+TGG | - | chr4.3:28351044-28351063 | MS.gene96787:intron | 30.0% | |
| AATGAGCCAAAATGTAGAAA+AGG | - | chr4.3:28349765-28349784 | MS.gene96787:intron | 30.0% | |
| AATGGTTCTTTGTTCTCATT+TGG | + | chr4.3:28349733-28349752 | None:intergenic | 30.0% | |
| ACATTGCTTCTTATTCACTA+GGG | + | chr4.3:28349800-28349819 | None:intergenic | 30.0% | |
| ACTTTGATGTCAATGATCAT+CGG | - | chr4.3:28351510-28351529 | MS.gene96787:intron | 30.0% | |
| AGTTATTTACATCCACATTG+TGG | + | chr4.3:28351960-28351979 | None:intergenic | 30.0% | |
| ATGTATATATAGCAACACCT+AGG | - | chr4.3:28350646-28350665 | MS.gene96787:intron | 30.0% | |
| ATGTGTGAAAATCAATCATC+GGG | - | chr4.3:28349688-28349707 | MS.gene96787:CDS | 30.0% | |
| ATTATCATTGGACAAGATGT+TGG | + | chr4.3:28351045-28351064 | None:intergenic | 30.0% | |
| CATGTGTGAAAATCAATCAT+CGG | - | chr4.3:28349687-28349706 | MS.gene96787:CDS | 30.0% | |
| CTAGTACTTGTAGAGTAATT+TGG | - | chr4.3:28351147-28351166 | MS.gene96787:intron | 30.0% | |
| GAGATTAATCGGTAAGAAAT+AGG | + | chr4.3:28350577-28350596 | None:intergenic | 30.0% | |
| GATAAGGGAAAAGATAGAAA+TGG | - | chr4.3:28349865-28349884 | MS.gene96787:intron | 30.0% | |
| GATTAATCGGTAAGAAATAG+GGG | + | chr4.3:28350575-28350594 | None:intergenic | 30.0% | |
| GTAGTCAAAGGATAAACTTT+AGG | + | chr4.3:28351727-28351746 | None:intergenic | 30.0% | |
| GTGCTCAAAATTAGTGTTTA+GGG | - | chr4.3:28351420-28351439 | MS.gene96787:intron | 30.0% | |
| TAAGTCTAAATGAGTGACTT+AGG | - | chr4.3:28351446-28351465 | MS.gene96787:intron | 30.0% | |
| TCTTACATACTCTCTTCTAT+TGG | + | chr4.3:28351194-28351213 | None:intergenic | 30.0% | |
| TGCTCAAAATTAGTGTTTAG+GGG | - | chr4.3:28351421-28351440 | MS.gene96787:intron | 30.0% | |
| TGTGCTCAAAATTAGTGTTT+AGG | - | chr4.3:28351419-28351438 | MS.gene96787:intron | 30.0% | |
| TTGGTTTATCAGAAATGAAG+GGG | + | chr4.3:28349714-28349733 | None:intergenic | 30.0% | |
| TTTACCTTGTAAGTAAGATG+AGG | + | chr4.3:28349982-28350001 | None:intergenic | 30.0% | |
| ! | AAAACAAACTCTAGAAAAGC+TGG | - | chr4.3:28350770-28350789 | MS.gene96787:CDS | 30.0% |
| ! | AAAATTGAATCGATTCATGG+AGG | + | chr4.3:28350369-28350388 | None:intergenic | 30.0% |
| ! | AGTGACATGCAAATTTTTCT+TGG | + | chr4.3:28350310-28350329 | None:intergenic | 30.0% |
| ! | CAAATATGGACTTTTCTCAA+TGG | - | chr4.3:28350417-28350436 | MS.gene96787:intron | 30.0% |
| ! | CTTCTTCCTTTTCTACATTT+TGG | + | chr4.3:28349774-28349793 | None:intergenic | 30.0% |
| ! | GACAACAATTTTTCATGTGA+TGG | - | chr4.3:28350992-28351011 | MS.gene96787:CDS | 30.0% |
| ! | GTGACTTAGGTTTTCTTTTT+TGG | - | chr4.3:28351459-28351478 | MS.gene96787:intron | 30.0% |
| ! | TAATTTAAAATTTAGGCCGG+AGG | + | chr4.3:28350461-28350480 | None:intergenic | 30.0% |
| !! | AAGATAGACGCTTTTTGTTT+AGG | - | chr4.3:28351623-28351642 | MS.gene96787:intron | 30.0% |
| !! | AGAACTTTTGTGATTTGTGT+CGG | - | chr4.3:28351388-28351407 | MS.gene96787:intron | 30.0% |
| !! | CTCATTGATTCAATGTCTAA+TGG | + | chr4.3:28349751-28349770 | None:intergenic | 30.0% |
| !! | TTGATTTGTGTTAATGTTGC+AGG | - | chr4.3:28351983-28352002 | MS.gene96787:CDS | 30.0% |
| !!! | TTTTAGTTTGAACTCGAAGA+TGG | - | chr4.3:28350854-28350873 | MS.gene96787:CDS | 30.0% |
| AAGCCAAAATGCAATTTCAG+TGG | - | chr4.3:28352025-28352044 | MS.gene96787:CDS | 35.0% | |
| AGTGAATAAGAAGCAATGTG+AGG | - | chr4.3:28349801-28349820 | MS.gene96787:intron | 35.0% | |
| CACATTGCTTCTTATTCACT+AGG | + | chr4.3:28349801-28349820 | None:intergenic | 35.0% | |
| CATTATTGTTCTCCGAAGAA+AGG | + | chr4.3:28351682-28351701 | None:intergenic | 35.0% | |
| CTCAAGCGAAATCGTAAAAA+TGG | + | chr4.3:28351328-28351347 | None:intergenic | 35.0% | |
| GAGAAAGGAGGAAAAAAATG+AGG | - | chr4.3:28349926-28349945 | MS.gene96787:intron | 35.0% | |
| GATTCCTCATCTTACTTACA+AGG | - | chr4.3:28349975-28349994 | MS.gene96787:intron | 35.0% | |
| GTACTTGTAGAGTAATTTGG+AGG | - | chr4.3:28351150-28351169 | MS.gene96787:intron | 35.0% | |
| GTGAATAAGAAGCAATGTGA+GGG | - | chr4.3:28349802-28349821 | MS.gene96787:intron | 35.0% | |
| TAAAGATGCATGTGTACTCA+CGG | + | chr4.3:28351928-28351947 | None:intergenic | 35.0% | |
| TCTTCGGAGAACAATAATGT+GGG | - | chr4.3:28351683-28351702 | MS.gene96787:intron | 35.0% | |
| TGCATGTCACTCAACATATA+CGG | - | chr4.3:28350319-28350338 | MS.gene96787:intron | 35.0% | |
| TTCATCTCCGCAAATGTTAA+AGG | + | chr4.3:28350931-28350950 | None:intergenic | 35.0% | |
| TTCTTCCTTAGTCCTTTCTT+CGG | - | chr4.3:28351667-28351686 | MS.gene96787:intron | 35.0% | |
| TTCTTCGGAGAACAATAATG+TGG | - | chr4.3:28351682-28351701 | MS.gene96787:intron | 35.0% | |
| TTTGTTCTTTGTACTATGGC+AGG | - | chr4.3:28350233-28350252 | MS.gene96787:intron | 35.0% | |
| ! | ATTTGAAACTTACATGGGCT+TGG | + | chr4.3:28351085-28351104 | None:intergenic | 35.0% |
| ! | CTCTTTTCACAAAGAACCAA+CGG | - | chr4.3:28350488-28350507 | MS.gene96787:intron | 35.0% |
| ! | GTAGCTGTTTCCATTATCAT+TGG | + | chr4.3:28351057-28351076 | None:intergenic | 35.0% |
| !! | CTTGGTGCACATTTTATGAA+AGG | + | chr4.3:28350087-28350106 | None:intergenic | 35.0% |
| !!! | ACTTCAAATGCACTAGCTTT+TGG | - | chr4.3:28350879-28350898 | MS.gene96787:CDS | 35.0% |
| !!! | TTTTTTGGTCTCGATGTTGA+CGG | - | chr4.3:28351474-28351493 | MS.gene96787:intron | 35.0% |
| AAGAATGTGTGTGTTCGAGA+AGG | - | chr4.3:28351210-28351229 | MS.gene96787:intron | 40.0% | |
| AATAAGAAGCAATGTGAGGG+AGG | - | chr4.3:28349805-28349824 | MS.gene96787:intron | 40.0% | |
| AGATTCTGTAACCATTGTGG+AGG | - | chr4.3:28350722-28350741 | MS.gene96787:CDS | 40.0% | |
| ATAAGAAGCAATGTGAGGGA+GGG | - | chr4.3:28349806-28349825 | MS.gene96787:intron | 40.0% | |
| ATGACACATCGACGATACTA+CGG | + | chr4.3:28351600-28351619 | None:intergenic | 40.0% | |
| CATCGGATTTCTTTCAGTCA+TGG | - | chr4.3:28351527-28351546 | MS.gene96787:intron | 40.0% | |
| CCAAAATGCAATTTCAGTGG+AGG | - | chr4.3:28352028-28352047 | MS.gene96787:CDS | 40.0% | |
| CGATTCATGGAGGTTCATAT+AGG | + | chr4.3:28350359-28350378 | None:intergenic | 40.0% | |
| GGTAGATTCTGTAACCATTG+TGG | - | chr4.3:28350719-28350738 | MS.gene96787:CDS | 40.0% | |
| TTAGACCAAAACACTCTTCG+AGG | + | chr4.3:28350111-28350130 | None:intergenic | 40.0% | |
| ! | CCTCCACTGAAATTGCATTT+TGG | + | chr4.3:28352031-28352050 | None:intergenic | 40.0% |
| !!! | CACTAGCTTTTGGACAAATG+TGG | - | chr4.3:28350889-28350908 | MS.gene96787:CDS | 40.0% |
| ACAACAAAAAAAGGTCGGGC+AGG | - | chr4.3:28350517-28350536 | MS.gene96787:intron | 45.0% | |
| AGCTAGCAGCAGGAGAAATT+AGG | - | chr4.3:28352060-28352079 | MS.gene96787:CDS | 45.0% | |
| CAAAACACTCTTCGAGGACT+TGG | + | chr4.3:28350105-28350124 | None:intergenic | 45.0% | |
| CTAGCAGCAGGAGAAATTAG+GGG | - | chr4.3:28352062-28352081 | MS.gene96787:CDS | 45.0% | |
| GAAAGTTACAAGCTAGCAGC+AGG | - | chr4.3:28352050-28352069 | MS.gene96787:CDS | 45.0% | |
| GCTAGCAGCAGGAGAAATTA+GGG | - | chr4.3:28352061-28352080 | MS.gene96787:CDS | 45.0% | |
| GTTCTCCGAAGAAAGGACTA+AGG | + | chr4.3:28351675-28351694 | None:intergenic | 45.0% | |
| TAAGAAGCAATGTGAGGGAG+GGG | - | chr4.3:28349807-28349826 | MS.gene96787:intron | 45.0% | |
| TGACACATCGACGATACTAC+GGG | + | chr4.3:28351599-28351618 | None:intergenic | 45.0% | |
| TTCTTCTGGCCAGTAGTCAA+AGG | + | chr4.3:28351739-28351758 | None:intergenic | 45.0% | |
| ! | ATGCACTTGCTGAGAGAGAA+AGG | - | chr4.3:28349911-28349930 | MS.gene96787:intron | 45.0% |
| !!! | CAAGTCCTCGAAGAGTGTTT+TGG | - | chr4.3:28350103-28350122 | MS.gene96787:intron | 45.0% |
| ACAAAAAAAGGTCGGGCAGG+AGG | - | chr4.3:28350520-28350539 | MS.gene96787:intron | 50.0% | |
| CTTCACTGCTTCCTCCACAA+TGG | + | chr4.3:28350736-28350755 | None:intergenic | 50.0% | |
| GACACATCGACGATACTACG+GGG | + | chr4.3:28351598-28351617 | None:intergenic | 50.0% | |
| ! | CACTTGCTGAGAGAGAAAGG+AGG | - | chr4.3:28349914-28349933 | MS.gene96787:intron | 50.0% |
| CGGGCAGGAGGTAGAGATTA+GGG | - | chr4.3:28350532-28350551 | MS.gene96787:intron | 55.0% | |
| TCGGGCAGGAGGTAGAGATT+AGG | - | chr4.3:28350531-28350550 | MS.gene96787:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 28349643 | 28352100 | 28349643 | ID=MS.gene96787 |
| chr4.3 | mRNA | 28349643 | 28352100 | 28349643 | ID=MS.gene96787.t1;Parent=MS.gene96787 |
| chr4.3 | exon | 28351747 | 28352100 | 28351747 | ID=MS.gene96787.t1.exon1;Parent=MS.gene96787.t1 |
| chr4.3 | CDS | 28351747 | 28352100 | 28351747 | ID=cds.MS.gene96787.t1;Parent=MS.gene96787.t1 |
| chr4.3 | exon | 28350652 | 28351023 | 28350652 | ID=MS.gene96787.t1.exon2;Parent=MS.gene96787.t1 |
| chr4.3 | CDS | 28350652 | 28351023 | 28350652 | ID=cds.MS.gene96787.t1;Parent=MS.gene96787.t1 |
| chr4.3 | exon | 28349643 | 28349738 | 28349643 | ID=MS.gene96787.t1.exon3;Parent=MS.gene96787.t1 |
| chr4.3 | CDS | 28349643 | 28349738 | 28349643 | ID=cds.MS.gene96787.t1;Parent=MS.gene96787.t1 |
| Gene Sequence |
| Protein sequence |
