AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96891

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96891.t1 MTR_1g047550 97.207 179 5 0 1 179 1 179 1.14e-128 358
MS.gene96891.t1 MTR_8g079502 86.228 167 23 0 1 167 1 167 2.48e-106 302
MS.gene96891.t1 MTR_1g063160 79.330 179 37 0 1 179 1 179 8.72e-101 288
MS.gene96891.t1 MTR_4g131030 76.064 188 28 1 1 171 1 188 1.15e-99 286
MS.gene96891.t1 MTR_1g054265 79.167 168 35 0 1 168 1 168 6.88e-94 270
MS.gene96891.t1 MTR_8g051580 59.429 175 71 0 1 175 1 175 1.24e-72 217
MS.gene96891.t1 MTR_8g046350 58.333 168 64 2 1 168 1 162 4.80e-63 192
MS.gene96891.t1 MTR_4g094632 40.854 164 85 3 1 164 1 152 1.99e-32 114
MS.gene96891.t1 MTR_3g080940 38.816 152 81 2 1 140 8 159 5.09e-28 104
MS.gene96891.t1 MTR_3g052870 42.029 138 77 2 2 136 9 146 6.25e-28 104
MS.gene96891.t1 MTR_4g094638 41.958 143 78 3 1 140 1 141 9.23e-27 100
MS.gene96891.t1 MTR_1g106070 43.333 120 66 1 2 119 9 128 1.08e-26 100
MS.gene96891.t1 MTR_3g052920 62.319 69 26 0 2 70 9 77 7.77e-26 99.4
MS.gene96891.t1 MTR_1g105920 62.319 69 26 0 2 70 9 77 4.47e-25 97.4
MS.gene96891.t1 MTR_1g077360 46.535 101 52 1 2 100 9 109 7.36e-25 96.7
MS.gene96891.t1 MTR_5g045560 57.143 70 30 0 1 70 8 77 2.59e-24 95.5
MS.gene96891.t1 MTR_1g105910 60.870 69 27 0 2 70 9 77 5.22e-24 94.7
MS.gene96891.t1 MTR_2g030740 60.870 69 27 0 2 70 9 77 5.33e-24 94.7
MS.gene96891.t1 MTR_1g012570 43.243 111 60 2 2 110 9 118 9.04e-24 94.0
MS.gene96891.t1 MTR_2g105290 39.823 113 66 1 1 113 11 121 1.53e-23 91.7
MS.gene96891.t1 MTR_8g043650 59.420 69 28 0 2 70 9 77 1.57e-23 93.2
MS.gene96891.t1 MTR_1g075600 57.746 71 30 0 2 72 9 79 2.65e-23 92.8
MS.gene96891.t1 MTR_8g086290 48.837 86 42 1 2 85 12 97 2.94e-23 91.3
MS.gene96891.t1 MTR_3g030770 57.971 69 29 0 2 70 9 77 3.42e-23 92.4
MS.gene96891.t1 MTR_5g053390 53.247 77 36 0 2 78 9 85 3.42e-23 92.4
MS.gene96891.t1 MTR_1g108510 57.971 69 29 0 2 70 9 77 3.92e-23 92.0
MS.gene96891.t1 MTR_0121s0100 56.522 69 30 0 2 70 9 77 1.01e-22 88.6
MS.gene96891.t1 MTR_3g030780 43.243 111 59 2 2 109 9 118 1.36e-22 88.2
MS.gene96891.t1 MTR_1g108580 55.072 69 31 0 2 70 9 77 6.24e-22 89.0
MS.gene96891.t1 MTR_7g028448 37.209 129 73 2 16 140 26 150 1.32e-21 86.7
MS.gene96891.t1 MTR_4g036915 37.209 129 73 2 16 140 26 150 1.32e-21 86.7
MS.gene96891.t1 MTR_2g093190 56.522 69 30 0 2 70 9 77 1.53e-21 87.8
MS.gene96891.t1 MTR_5g055100 49.351 77 39 0 2 78 9 85 1.65e-21 88.2
MS.gene96891.t1 MTR_0121s0080 42.017 119 66 2 2 118 9 126 1.80e-21 87.8
MS.gene96891.t1 MTR_2g085250 53.623 69 32 0 2 70 9 77 2.15e-21 87.8
MS.gene96891.t1 MTR_2g085280 53.623 69 32 0 2 70 9 77 2.21e-21 87.8
MS.gene96891.t1 MTR_8g087860 35.404 161 92 4 1 161 17 165 2.74e-20 85.1
MS.gene96891.t1 MTR_1g105905 40.157 127 58 3 18 142 8 118 3.81e-20 84.0
MS.gene96891.t1 MTR_0003s0590 42.202 109 55 2 1 102 1 108 4.82e-20 84.3
MS.gene96891.t1 MTR_3g452380 48.276 87 43 1 1 87 16 100 8.03e-19 80.9
MS.gene96891.t1 MTR_3g005530 34.783 161 93 4 1 161 1 149 1.15e-18 80.1
MS.gene96891.t1 MTR_4g127140 50.000 80 40 0 1 80 11 90 1.38e-18 79.3
MS.gene96891.t1 MTR_5g021270 51.613 62 30 0 1 62 1 62 1.41e-18 80.1
MS.gene96891.t1 MTR_5g021270 51.613 62 30 0 1 62 1 62 1.46e-18 80.1
MS.gene96891.t1 MTR_2g017865 42.308 104 57 1 1 104 16 116 1.52e-18 80.5
MS.gene96891.t1 MTR_1g053070 50.725 69 34 0 1 69 1 69 3.83e-18 79.3
MS.gene96891.t1 MTR_7g062350 57.377 61 26 0 10 70 29 89 5.54e-18 79.0
MS.gene96891.t1 MTR_7g075870 39.423 104 60 1 1 104 1 101 9.46e-18 77.4
MS.gene96891.t1 MTR_5g066180 48.611 72 37 0 1 72 1 72 1.08e-17 77.8
MS.gene96891.t1 MTR_2g009890 39.091 110 66 1 1 110 1 109 2.34e-17 77.8
MS.gene96891.t1 MTR_8g033270 49.275 69 35 0 1 69 1 69 3.53e-17 76.6
MS.gene96891.t1 MTR_5g066960 53.333 60 28 0 1 60 1 60 1.48e-16 70.5
MS.gene96891.t1 MTR_3g067875 60.417 48 19 0 18 65 8 55 1.89e-16 70.5
MS.gene96891.t1 MTR_8g033220 49.275 69 35 0 1 69 1 69 1.99e-16 74.3
MS.gene96891.t1 MTR_8g033220 49.275 69 35 0 1 69 1 69 2.29e-16 74.3
MS.gene96891.t1 MTR_1g101970 46.479 71 38 0 1 71 1 71 3.06e-16 73.2
MS.gene96891.t1 MTR_1g108500 65.957 47 16 0 18 64 113 159 3.40e-16 75.1
MS.gene96891.t1 MTR_5g031000 37.500 120 67 3 1 120 1 112 3.53e-16 73.9
MS.gene96891.t1 MTR_7g075870 39.048 105 60 2 1 104 1 102 3.67e-16 73.2
MS.gene96891.t1 MTR_5g031000 37.500 120 67 3 1 120 1 112 3.77e-16 73.6
MS.gene96891.t1 MTR_3g067910 52.727 55 26 0 18 72 6 60 5.86e-16 70.5
MS.gene96891.t1 MTR_4g102530 46.377 69 37 0 1 69 1 69 6.49e-16 72.4
MS.gene96891.t1 MTR_1g038300 46.479 71 36 1 1 69 1 71 1.20e-15 72.4
MS.gene96891.t1 MTR_2g461710 50.877 57 28 0 1 57 1 57 2.27e-15 67.4
MS.gene96891.t1 MTR_4g093970 47.692 65 34 0 1 65 27 91 2.54e-15 71.6
MS.gene96891.t1 MTR_8g066260 37.624 101 49 2 1 90 1 98 3.13e-15 71.2
MS.gene96891.t1 MTR_7g016630 35.417 96 56 2 1 90 1 96 5.17e-15 70.9
MS.gene96891.t1 MTR_4g109810 33.588 131 72 3 1 116 1 131 8.09e-15 70.1
MS.gene96891.t1 MTR_5g046870 52.632 57 27 0 1 57 1 57 8.16e-15 67.4
MS.gene96891.t1 MTR_5g046790 49.123 57 29 0 1 57 1 57 9.49e-15 69.7
MS.gene96891.t1 MTR_7g016600 52.632 57 27 0 1 57 1 57 1.14e-14 70.1
MS.gene96891.t1 MTR_4g109830 41.429 70 40 1 1 69 1 70 1.20e-14 69.7
MS.gene96891.t1 MTR_3g102570 45.070 71 38 1 1 70 1 71 1.54e-14 70.5
MS.gene96891.t1 MTR_3g113030 50.000 60 30 0 1 60 1 60 1.54e-14 69.3
MS.gene96891.t1 MTR_4g036050 44.444 72 39 1 1 71 1 72 1.98e-14 68.2
MS.gene96891.t1 MTR_4g036050 44.444 72 39 1 1 71 1 72 2.02e-14 68.6
MS.gene96891.t1 MTR_4g036050 44.444 72 39 1 1 71 1 72 2.29e-14 68.2
MS.gene96891.t1 MTR_4g084740 47.887 71 36 1 1 70 1 71 2.29e-14 70.1
MS.gene96891.t1 MTR_4g036050 44.444 72 39 1 1 71 1 72 2.34e-14 67.8
MS.gene96891.t1 MTR_5g032150 42.029 69 40 0 1 69 1 69 2.93e-14 68.6
MS.gene96891.t1 MTR_3g084980 54.386 57 26 0 1 57 1 57 2.94e-14 68.9
MS.gene96891.t1 MTR_5g032520 42.029 69 40 0 1 69 1 69 3.62e-14 68.2
MS.gene96891.t1 MTR_8g097090 52.632 57 27 0 1 57 1 57 3.74e-14 68.6
MS.gene96891.t1 MTR_4g093030 54.386 57 26 0 1 57 1 57 4.07e-14 66.6
MS.gene96891.t1 MTR_1g041615 68.182 44 14 0 15 58 19 62 4.74e-14 65.9
MS.gene96891.t1 MTR_6g015975 52.632 57 27 0 1 57 1 57 5.15e-14 68.2
MS.gene96891.t1 MTR_1g029670 38.462 65 40 0 1 65 1 65 1.06e-13 66.2
MS.gene96891.t1 MTR_3g088615 40.000 65 39 0 1 65 1 65 1.47e-13 65.9
MS.gene96891.t1 MTR_6g464720 34.058 138 83 4 1 134 1 134 2.38e-13 66.2
MS.gene96891.t1 MTR_7g075850 43.662 71 38 1 1 69 1 71 2.79e-13 66.2
MS.gene96891.t1 MTR_3g109930 30.556 144 80 4 11 152 11 136 8.84e-13 63.5
MS.gene96891.t1 MTR_3g067870 50.000 52 26 0 18 69 92 143 1.17e-12 62.8
MS.gene96891.t1 MTR_5g041650 48.148 54 28 0 1 54 38 91 1.50e-12 65.1
MS.gene96891.t1 MTR_8g022970 35.246 122 67 2 3 120 19 132 2.25e-12 62.8
MS.gene96891.t1 MTR_3g437790 33.962 106 61 2 19 115 30 135 3.45e-12 62.4
MS.gene96891.t1 MTR_4g108720 46.296 54 29 0 1 54 1 54 3.28e-11 61.2
MS.gene96891.t1 MTR_6g018920 40.000 60 36 0 1 60 1 60 6.47e-11 60.1
MS.gene96891.t1 MTR_1g114730 34.940 83 46 1 1 75 1 83 7.42e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96891.t1 AT2G34440 44.444 171 83 5 1 160 1 170 2.57e-38 129
MS.gene96891.t1 AT2G24840 44.000 125 62 2 1 121 62 182 1.54e-31 114
MS.gene96891.t1 AT3G66656 48.696 115 54 1 1 110 1 115 6.60e-31 110
MS.gene96891.t1 AT5G60440 39.490 157 76 3 2 154 7 148 4.97e-28 106
MS.gene96891.t1 AT1G01530 40.288 139 79 2 1 139 6 140 9.23e-24 94.4
MS.gene96891.t1 AT3G57230 33.544 158 92 3 1 158 1 145 2.73e-22 87.8
MS.gene96891.t1 AT3G57230 33.333 165 97 3 1 165 1 152 3.47e-21 87.4
MS.gene96891.t1 AT3G57230 33.333 165 97 3 1 165 1 152 3.47e-21 87.4
MS.gene96891.t1 AT4G36590 33.333 174 78 4 2 160 7 157 4.78e-21 87.0
MS.gene96891.t1 AT5G13790 45.545 101 43 2 1 100 1 90 7.83e-21 87.0
MS.gene96891.t1 AT1G47760 35.714 154 83 5 1 151 1 141 3.63e-20 83.2
MS.gene96891.t1 AT1G72350 39.231 130 75 2 2 129 43 170 6.41e-20 83.6
MS.gene96891.t1 AT1G65360 35.714 112 72 0 1 112 6 117 8.03e-20 83.6
MS.gene96891.t1 AT4G09960 33.540 161 95 4 1 161 2 150 1.47e-19 82.8
MS.gene96891.t1 AT4G09960 33.540 161 95 4 1 161 1 149 1.49e-19 82.8
MS.gene96891.t1 AT5G13790 46.753 77 41 0 1 77 1 77 1.88e-19 83.2
MS.gene96891.t1 AT4G09960 33.540 161 95 4 1 161 11 159 2.07e-19 82.4
MS.gene96891.t1 AT4G09960 33.540 161 95 4 1 161 27 175 2.16e-19 82.8
MS.gene96891.t1 AT3G57390 52.174 69 33 0 1 69 1 69 3.62e-19 81.6
MS.gene96891.t1 AT4G09960 45.570 79 43 0 1 79 1 79 4.19e-19 81.3
MS.gene96891.t1 AT3G61120 50.725 69 34 0 1 69 1 69 4.90e-19 81.6
MS.gene96891.t1 AT3G57390 52.174 69 33 0 1 69 1 69 7.06e-19 81.6
MS.gene96891.t1 AT4G09960 45.570 79 43 0 1 79 96 174 1.13e-18 82.0
MS.gene96891.t1 AT4G22950 50.725 69 34 0 1 69 1 69 1.85e-18 78.6
MS.gene96891.t1 AT2G45660 37.963 108 64 2 1 108 1 105 1.98e-18 78.2
MS.gene96891.t1 AT2G22630 50.725 69 34 0 1 69 1 69 2.61e-18 79.3
MS.gene96891.t1 AT2G22630 50.725 69 34 0 1 69 1 69 2.61e-18 79.3
MS.gene96891.t1 AT1G29962 47.945 73 38 0 2 74 8 80 2.96e-18 78.2
MS.gene96891.t1 AT3G58780 40.566 106 60 1 1 106 16 118 3.91e-18 79.3
MS.gene96891.t1 AT3G58780 40.566 106 60 1 1 106 22 124 4.28e-18 79.3
MS.gene96891.t1 AT3G04100 36.913 149 68 5 2 142 14 144 4.77e-18 78.2
MS.gene96891.t1 AT1G28460 33.548 155 88 3 2 141 8 162 5.02e-18 77.8
MS.gene96891.t1 AT2G42830 39.623 106 61 1 1 106 16 118 7.75e-18 78.6
MS.gene96891.t1 AT3G58780 40.566 106 60 1 1 106 16 118 7.91e-18 79.0
MS.gene96891.t1 AT2G42830 39.623 106 61 1 1 106 16 118 8.00e-18 78.6
MS.gene96891.t1 AT2G45660 37.963 108 64 2 1 108 1 105 8.16e-18 77.8
MS.gene96891.t1 AT4G37940 50.725 69 34 0 1 69 1 69 9.78e-18 77.8
MS.gene96891.t1 AT2G45650 49.275 69 35 0 1 69 1 69 1.10e-17 78.2
MS.gene96891.t1 AT5G51870 35.075 134 79 3 1 132 1 128 1.26e-17 76.3
MS.gene96891.t1 AT4G37940 50.725 69 34 0 1 69 1 69 1.33e-17 77.4
MS.gene96891.t1 AT5G51860 43.373 83 47 0 1 83 1 83 1.85e-17 76.6
MS.gene96891.t1 AT5G65070 44.737 76 41 1 1 75 1 76 1.90e-17 75.1
MS.gene96891.t1 AT3G58780 45.977 87 34 1 1 74 16 102 1.98e-17 77.4
MS.gene96891.t1 AT4G22950 50.725 69 34 0 1 69 1 69 2.03e-17 77.0
MS.gene96891.t1 AT4G22950 50.725 69 34 0 1 69 1 69 2.03e-17 77.0
MS.gene96891.t1 AT5G51870 35.075 134 79 3 1 132 24 151 2.06e-17 76.3
MS.gene96891.t1 AT5G51860 43.373 83 47 0 1 83 1 83 2.07e-17 76.6
MS.gene96891.t1 AT4G37940 39.167 120 66 3 1 120 1 113 2.18e-17 75.9
MS.gene96891.t1 AT5G65070 44.737 76 41 1 1 75 1 76 3.74e-17 75.9
MS.gene96891.t1 AT5G51870 35.075 134 79 3 1 132 1 128 4.12e-17 75.9
MS.gene96891.t1 AT4G18960 37.615 109 68 0 2 110 18 126 4.52e-17 76.6
MS.gene96891.t1 AT5G62165 37.500 104 62 2 1 104 1 101 5.71e-17 74.3
MS.gene96891.t1 AT5G62165 37.500 104 62 2 1 104 1 101 5.71e-17 74.3
MS.gene96891.t1 AT5G62165 37.500 104 62 2 1 104 1 101 5.71e-17 74.3
MS.gene96891.t1 AT5G51870 35.075 134 79 3 1 132 1 128 6.14e-17 75.5
MS.gene96891.t1 AT5G62165 37.500 104 62 2 1 104 1 101 7.98e-17 73.9
MS.gene96891.t1 AT5G62165 37.500 104 62 2 1 104 1 101 7.98e-17 73.9
MS.gene96891.t1 AT5G62165 37.500 104 62 2 1 104 1 101 7.98e-17 73.9
MS.gene96891.t1 AT5G62165 37.500 104 62 2 1 104 1 101 7.98e-17 73.9
MS.gene96891.t1 AT5G62165 37.500 104 62 2 1 104 1 101 7.98e-17 73.9
MS.gene96891.t1 AT5G51870 35.075 134 79 3 1 132 11 138 8.90e-17 75.5
MS.gene96891.t1 AT5G10140 41.414 99 54 2 1 95 1 99 9.55e-17 73.9
MS.gene96891.t1 AT5G65070 44.737 76 41 1 1 75 1 76 1.29e-16 75.1
MS.gene96891.t1 AT5G10140 41.414 99 54 2 1 95 1 99 1.39e-16 73.9
MS.gene96891.t1 AT1G17310 49.383 81 34 2 17 92 63 141 1.55e-16 74.3
MS.gene96891.t1 AT4G24540 38.947 95 57 1 1 95 1 94 1.77e-16 74.3
MS.gene96891.t1 AT1G17310 49.383 81 34 2 17 92 74 152 2.14e-16 74.3
MS.gene96891.t1 AT5G65070 44.737 76 41 1 1 75 1 76 2.24e-16 73.9
MS.gene96891.t1 AT5G10140 46.053 76 40 1 1 75 1 76 2.34e-16 73.2
MS.gene96891.t1 AT5G62165 37.500 104 62 2 1 104 1 101 2.90e-16 73.6
MS.gene96891.t1 AT5G62165 37.500 104 62 2 1 104 1 101 2.90e-16 73.6
MS.gene96891.t1 AT5G62165 37.500 104 62 2 1 104 1 101 2.90e-16 73.6
MS.gene96891.t1 AT5G62165 35.577 104 64 1 1 104 1 101 2.91e-16 73.2
MS.gene96891.t1 AT5G62165 35.577 104 64 1 1 104 1 101 2.91e-16 73.2
MS.gene96891.t1 AT1G77980 50.704 71 34 1 1 70 1 71 3.09e-16 75.1
MS.gene96891.t1 AT5G10140 46.053 76 40 1 1 75 1 76 3.40e-16 73.2
MS.gene96891.t1 AT4G11880 40.351 114 62 3 1 108 1 114 3.47e-16 72.8
MS.gene96891.t1 AT4G11880 40.351 114 62 3 1 108 1 114 3.47e-16 72.8
MS.gene96891.t1 AT5G65070 50.769 65 30 1 1 63 1 65 4.93e-16 73.6
MS.gene96891.t1 AT1G71692 37.113 97 60 1 1 96 1 97 5.12e-16 73.2
MS.gene96891.t1 AT5G62165 41.667 84 45 1 1 80 1 84 6.29e-16 70.1
MS.gene96891.t1 AT2G22540 46.377 69 37 0 1 69 1 69 9.18e-16 72.8
MS.gene96891.t1 AT2G22540 46.377 69 37 0 1 69 1 69 9.18e-16 72.8
MS.gene96891.t1 AT1G22130 49.296 71 35 1 1 70 1 71 9.23e-16 73.9
MS.gene96891.t1 AT1G77950 35.542 166 89 7 1 151 1 163 1.18e-15 72.8
MS.gene96891.t1 AT1G77950 35.542 166 89 7 1 151 1 163 1.18e-15 72.8
MS.gene96891.t1 AT1G77950 35.542 166 89 7 1 151 1 163 1.18e-15 72.8
MS.gene96891.t1 AT1G77950 35.542 166 89 7 1 151 1 163 1.18e-15 72.8
MS.gene96891.t1 AT5G20240 47.619 63 33 0 1 63 1 63 1.40e-15 70.5
MS.gene96891.t1 AT4G11880 40.351 114 62 3 1 108 1 114 1.98e-15 71.6
MS.gene96891.t1 AT4G11880 40.351 114 62 3 1 108 1 114 1.98e-15 71.6
MS.gene96891.t1 AT3G58780 55.932 59 26 0 1 59 16 74 2.02e-15 72.4
MS.gene96891.t1 AT2G14210 55.172 58 26 0 1 58 1 58 2.26e-15 71.6
MS.gene96891.t1 AT5G20240 46.970 66 35 0 1 66 1 66 2.79e-15 70.9
MS.gene96891.t1 AT2G14210 55.172 58 26 0 1 58 1 58 2.91e-15 71.2
MS.gene96891.t1 AT3G30260 38.235 102 53 3 1 93 1 101 4.97e-15 70.9
MS.gene96891.t1 AT2G03710 32.335 167 99 5 1 158 1 162 5.09e-15 69.7
MS.gene96891.t1 AT3G54340 29.730 185 106 5 1 167 1 179 8.81e-15 70.1
MS.gene96891.t1 AT5G65080 42.105 76 43 1 1 75 8 83 1.29e-14 68.9
MS.gene96891.t1 AT2G22540 52.632 57 27 0 1 57 1 57 1.36e-14 69.7
MS.gene96891.t1 AT1G24260 38.776 98 55 1 1 98 1 93 1.73e-14 69.7
MS.gene96891.t1 AT1G24260 38.776 98 55 1 1 98 1 93 2.12e-14 68.9
MS.gene96891.t1 AT1G28450 42.466 73 42 0 2 74 8 80 2.27e-14 68.2
MS.gene96891.t1 AT1G26310 50.000 58 29 0 1 58 1 58 2.64e-14 68.9
MS.gene96891.t1 AT3G02310 52.632 57 27 0 1 57 1 57 2.68e-14 68.2
MS.gene96891.t1 AT5G15800 52.632 57 27 0 1 57 1 57 2.91e-14 68.9
MS.gene96891.t1 AT1G69120 45.070 71 36 1 1 71 1 68 3.10e-14 68.6
MS.gene96891.t1 AT5G23260 63.265 49 18 0 1 49 1 49 3.16e-14 68.9
MS.gene96891.t1 AT5G23260 63.265 49 18 0 1 49 17 65 3.19e-14 68.9
MS.gene96891.t1 AT5G23260 63.265 49 18 0 1 49 1 49 3.36e-14 68.6
MS.gene96891.t1 AT5G23260 63.265 49 18 0 1 49 17 65 3.57e-14 68.9
MS.gene96891.t1 AT2G03710 32.143 168 98 7 1 158 1 162 3.66e-14 68.9
MS.gene96891.t1 AT2G03710 32.143 168 98 7 1 158 1 162 3.85e-14 68.6
MS.gene96891.t1 AT5G65050 42.105 76 43 1 1 75 1 76 3.98e-14 67.4
MS.gene96891.t1 AT5G65060 43.421 76 42 1 1 75 1 76 3.99e-14 67.4
MS.gene96891.t1 AT5G15800 52.632 57 27 0 1 57 1 57 4.23e-14 68.6
MS.gene96891.t1 AT1G46408 50.000 76 32 3 1 70 1 76 4.64e-14 68.6
MS.gene96891.t1 AT5G60910 49.123 57 29 0 1 57 1 57 4.90e-14 68.2
MS.gene96891.t1 AT3G02310 52.632 57 27 0 1 57 1 57 6.21e-14 68.2
MS.gene96891.t1 AT1G24260 52.632 57 27 0 1 57 1 57 6.34e-14 68.2
MS.gene96891.t1 AT1G69120 44.444 72 37 1 1 72 1 69 6.38e-14 68.2
MS.gene96891.t1 AT5G65060 43.421 76 42 1 1 75 1 76 7.36e-14 67.0
MS.gene96891.t1 AT5G65060 52.727 55 26 0 1 55 1 55 7.75e-14 66.6
MS.gene96891.t1 AT5G65080 50.000 56 28 0 1 56 8 63 9.48e-14 66.6
MS.gene96891.t1 AT5G65050 42.105 76 43 1 1 75 1 76 1.16e-13 66.2
MS.gene96891.t1 AT5G65050 42.105 76 43 1 1 75 1 76 1.32e-13 65.9
MS.gene96891.t1 AT5G65050 42.105 76 43 1 1 75 1 76 1.43e-13 65.9
MS.gene96891.t1 AT1G69540 44.444 72 39 1 1 71 1 72 8.55e-13 65.5
MS.gene96891.t1 AT1G18750 41.096 73 41 1 1 71 1 73 1.00e-12 65.5
MS.gene96891.t1 AT1G18750 41.096 73 41 1 1 71 1 73 1.01e-12 65.5
MS.gene96891.t1 AT1G18750 41.096 73 41 1 1 71 1 73 1.09e-12 65.5
MS.gene96891.t1 AT1G69540 44.444 72 39 1 1 71 1 72 1.16e-12 65.5
MS.gene96891.t1 AT5G49490 43.056 72 37 1 3 70 46 117 4.73e-12 63.2
MS.gene96891.t1 AT1G60920 40.789 76 40 2 3 73 5 80 5.96e-12 61.6
MS.gene96891.t1 AT4G37435 26.738 187 96 5 1 156 1 177 6.31e-12 61.6
MS.gene96891.t1 AT5G04640 39.241 79 42 2 1 73 1 79 7.37e-12 62.8
MS.gene96891.t1 AT2G03060 52.000 50 24 0 1 50 1 50 1.17e-11 62.4
MS.gene96891.t1 AT2G03060 52.000 50 24 0 1 50 1 50 1.17e-11 62.4
MS.gene96891.t1 AT2G03060 52.000 50 24 0 1 50 1 50 1.17e-11 62.4
MS.gene96891.t1 AT2G03060 52.000 50 24 0 1 50 1 50 1.20e-11 62.4
MS.gene96891.t1 AT5G38620 41.667 72 38 1 3 70 6 77 1.70e-11 62.0
MS.gene96891.t1 AT5G49420 41.667 72 38 1 3 70 8 79 1.87e-11 61.6
MS.gene96891.t1 AT2G26320 32.143 84 51 1 1 78 17 100 2.66e-11 58.2
MS.gene96891.t1 AT1G77080 66.667 39 13 0 1 39 1 39 5.07e-11 58.9
MS.gene96891.t1 AT1G77080 66.667 39 13 0 1 39 1 39 5.38e-11 58.9
MS.gene96891.t1 AT1G77080 66.667 39 13 0 1 39 1 39 9.10e-11 57.8

Find 34 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTTGCATCAGCCTCTTGC+TGG 0.304300 1.4:-32376421 None:intergenic
GGTGATAGACCTTACTCTTT+TGG 0.312324 1.4:+32376362 MS.gene96891:CDS
TAAAAGCGAAATCTGCAAAA+AGG 0.347726 1.4:+32376711 MS.gene96891:CDS
GACTTCTGCTCCGCACAAAA+TGG 0.371305 1.4:-32376318 None:intergenic
CAGAATCTCATCATGATTCT+CGG 0.389581 1.4:-32376543 None:intergenic
CATCAGAAGATGGGTTTCCT+TGG 0.395024 1.4:-32376448 None:intergenic
ACATTCTCAAAGCGTCGAAC+GGG 0.411690 1.4:+32376269 MS.gene96891:CDS
CATACAAAGAGCTTCAAGAT+TGG 0.419220 1.4:+32376615 MS.gene96891:CDS
ATACAAAGAGCTTCAAGATT+GGG 0.435727 1.4:+32376616 MS.gene96891:CDS
GCTGCAACAGCGTCAACACC+TGG 0.444699 1.4:-32376389 None:intergenic
TATTCCCACCACTGGTTCCT+CGG 0.454722 1.4:-32376690 None:intergenic
ATCAGAAGATGGGTTTCCTT+GGG 0.455461 1.4:-32376447 None:intergenic
ATCTTGGGAGCATCAGAAGA+TGG 0.459721 1.4:-32376458 None:intergenic
AGCCTCTTGCTGGAGATACT+TGG 0.471599 1.4:-32376411 None:intergenic
GCTATTGTTGTGTTCTCTCC+CGG 0.488473 1.4:+32376341 MS.gene96891:CDS
AATGTAACTTGCCTCGTGTT+GGG 0.491629 1.4:-32376251 None:intergenic
TACATTCTCAAAGCGTCGAA+CGG 0.497566 1.4:+32376268 MS.gene96891:CDS
ATCTTCTGATGCTCCCAAGA+TGG 0.505264 1.4:+32376460 MS.gene96891:CDS
CCTGGGTGGCCAAAAGAGTA+AGG 0.507377 1.4:-32376371 None:intergenic
TCTTGGGAGCATCAGAAGAT+GGG 0.537493 1.4:-32376457 None:intergenic
TCTTGCCGAGGAACCAGTGG+TGG 0.550244 1.4:+32376685 MS.gene96891:CDS
AAAAGAGTAAGGTCTATCAC+CGG 0.577324 1.4:-32376360 None:intergenic
GAATGTAACTTGCCTCGTGT+TGG 0.578413 1.4:-32376252 None:intergenic
GTATATGATGCTTCTTGCCG+AGG 0.597387 1.4:+32376673 MS.gene96891:CDS
GAATCATGATGAGATTCTGA+AGG 0.612338 1.4:+32376547 MS.gene96891:CDS
AAAGAGTAAGGTCTATCACC+GGG 0.631505 1.4:-32376359 None:intergenic
AGCCAAGTATCTCCAGCAAG+AGG 0.636118 1.4:+32376409 MS.gene96891:CDS
CTGCAACAGCGTCAACACCT+GGG 0.641450 1.4:-32376388 None:intergenic
GCTTCTTGCCGAGGAACCAG+TGG 0.653246 1.4:+32376682 MS.gene96891:CDS
CTTGCCGAGGAACCAGTGGT+GGG 0.657410 1.4:+32376686 MS.gene96891:CDS
GCTGATGCAAGCGATTCCCA+AGG 0.659023 1.4:+32376431 MS.gene96891:CDS
ATACTGACACAAATTCGAGA+AGG 0.659731 1.4:+32376509 MS.gene96891:CDS
TCGTGAAAGATCCCAACACG+AGG 0.703551 1.4:+32376240 MS.gene96891:CDS
CAACAGCGTCAACACCTGGG+TGG 0.713315 1.4:-32376385 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTTAATTTTTCCATCTT+GGG - chr1.4:32376476-32376495 None:intergenic 20.0%
!!! TAGATTTAATTTTTCCATCT+TGG - chr1.4:32376477-32376496 None:intergenic 20.0%
ATACAAAGAGCTTCAAGATT+GGG + chr1.4:32376616-32376635 MS.gene96891:CDS 30.0%
TAAAAGCGAAATCTGCAAAA+AGG + chr1.4:32376711-32376730 MS.gene96891:CDS 30.0%
! AATGAATTGTCCATTTTGTG+CGG + chr1.4:32376308-32376327 MS.gene96891:CDS 30.0%
AAAAGAGTAAGGTCTATCAC+CGG - chr1.4:32376363-32376382 None:intergenic 35.0%
ATACTGACACAAATTCGAGA+AGG + chr1.4:32376509-32376528 MS.gene96891:CDS 35.0%
CAGAATCTCATCATGATTCT+CGG - chr1.4:32376546-32376565 None:intergenic 35.0%
CATACAAAGAGCTTCAAGAT+TGG + chr1.4:32376615-32376634 MS.gene96891:CDS 35.0%
GAATCATGATGAGATTCTGA+AGG + chr1.4:32376547-32376566 MS.gene96891:CDS 35.0%
AAAGAGTAAGGTCTATCACC+GGG - chr1.4:32376362-32376381 None:intergenic 40.0%
! AATGTAACTTGCCTCGTGTT+GGG - chr1.4:32376254-32376273 None:intergenic 40.0%
! ATCAGAAGATGGGTTTCCTT+GGG - chr1.4:32376450-32376469 None:intergenic 40.0%
! GGTGATAGACCTTACTCTTT+TGG + chr1.4:32376362-32376381 MS.gene96891:CDS 40.0%
!! TACATTCTCAAAGCGTCGAA+CGG + chr1.4:32376268-32376287 MS.gene96891:CDS 40.0%
ATCTTCTGATGCTCCCAAGA+TGG + chr1.4:32376460-32376479 MS.gene96891:CDS 45.0%
GCTATTGTTGTGTTCTCTCC+CGG + chr1.4:32376341-32376360 MS.gene96891:CDS 45.0%
GTATATGATGCTTCTTGCCG+AGG + chr1.4:32376673-32376692 MS.gene96891:CDS 45.0%
! CATCAGAAGATGGGTTTCCT+TGG - chr1.4:32376451-32376470 None:intergenic 45.0%
! GAATGTAACTTGCCTCGTGT+TGG - chr1.4:32376255-32376274 None:intergenic 45.0%
!! ACATTCTCAAAGCGTCGAAC+GGG + chr1.4:32376269-32376288 MS.gene96891:CDS 45.0%
!! ATCTTGGGAGCATCAGAAGA+TGG - chr1.4:32376461-32376480 None:intergenic 45.0%
!! TCTTGGGAGCATCAGAAGAT+GGG - chr1.4:32376460-32376479 None:intergenic 45.0%
!! TTCGCTTTTATTCCCACCAC+TGG - chr1.4:32376701-32376720 None:intergenic 45.0%
AGCCAAGTATCTCCAGCAAG+AGG + chr1.4:32376409-32376428 MS.gene96891:CDS 50.0%
AGCCTCTTGCTGGAGATACT+TGG - chr1.4:32376414-32376433 None:intergenic 50.0%
GACTTCTGCTCCGCACAAAA+TGG - chr1.4:32376321-32376340 None:intergenic 50.0%
TCGTGAAAGATCCCAACACG+AGG + chr1.4:32376240-32376259 MS.gene96891:CDS 50.0%
!! TATTCCCACCACTGGTTCCT+CGG - chr1.4:32376693-32376712 None:intergenic 50.0%
CCTGGGTGGCCAAAAGAGTA+AGG - chr1.4:32376374-32376393 None:intergenic 55.0%
CTGCAACAGCGTCAACACCT+GGG - chr1.4:32376391-32376410 None:intergenic 55.0%
GCTGATGCAAGCGATTCCCA+AGG + chr1.4:32376431-32376450 MS.gene96891:CDS 55.0%
! CCTTACTCTTTTGGCCACCC+AGG + chr1.4:32376371-32376390 MS.gene96891:CDS 55.0%
CAACAGCGTCAACACCTGGG+TGG - chr1.4:32376388-32376407 None:intergenic 60.0%
CGCTTGCATCAGCCTCTTGC+TGG - chr1.4:32376424-32376443 None:intergenic 60.0%
CTTGCCGAGGAACCAGTGGT+GGG + chr1.4:32376686-32376705 MS.gene96891:CDS 60.0%
GCTGCAACAGCGTCAACACC+TGG - chr1.4:32376392-32376411 None:intergenic 60.0%
GCTTCTTGCCGAGGAACCAG+TGG + chr1.4:32376682-32376701 MS.gene96891:CDS 60.0%
TCTTGCCGAGGAACCAGTGG+TGG + chr1.4:32376685-32376704 MS.gene96891:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 32376212 32376751 32376212 ID=MS.gene96891
chr1.4 mRNA 32376212 32376751 32376212 ID=MS.gene96891.t1;Parent=MS.gene96891
chr1.4 exon 32376212 32376751 32376212 ID=MS.gene96891.t1.exon1;Parent=MS.gene96891.t1
chr1.4 CDS 32376212 32376751 32376212 ID=cds.MS.gene96891.t1;Parent=MS.gene96891.t1
Gene Sequence

>MS.gene96891

ATGGGTCGTCGCAAAATTGAGATTGAGATCGTGAAAGATCCCAACACGAGGCAAGTTACATTCTCAAAGCGTCGAACGGGCTTATTCAAGAAAGCAAATGAATTGTCCATTTTGTGCGGAGCAGAAGTCGCTATTGTTGTGTTCTCTCCCGGTGATAGACCTTACTCTTTTGGCCACCCAGGTGTTGACGCTGTTGCAGCCAAGTATCTCCAGCAAGAGGCTGATGCAAGCGATTCCCAAGGAAACCCATCTTCTGATGCTCCCAAGATGGAAAAATTAAATCTAGAACTTGCTGAAATACTGACACAAATTCGAGAAGGTGAAAAGCAAGCCGAGAATCATGATGAGATTCTGAAGGAAAATGATGTGACAAAACTCTCTGAGCTTAAAGAATTGAGAGATTCATACAAAGAGCTTCAAGATTGGGTCAAATTACGTCTTAGTGATATTGAAATATCAGAGTATATGATGCTTCTTGCCGAGGAACCAGTGGTGGGAATAAAAGCGAAATCTGCAAAAAGGAAAAGAAGAAGAAATTGA
Protein sequence

>MS.gene96891.t1

MGRRKIEIEIVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGDRPYSFGHPGVDAVAAKYLQQEADASDSQGNPSSDAPKMEKLNLELAEILTQIREGEKQAENHDEILKENDVTKLSELKELRDSYKELQDWVKLRLSDIEISEYMMLLAEEPVVGIKAKSAKRKRRRN