Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97374.t1 | RHN65761.1 | 93.6 | 455 | 20 | 2 | 1 | 455 | 886 | 1331 | 2.60E-246 | 860.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97374.t1 | Q9M1I1 | 64.3 | 462 | 143 | 7 | 1 | 455 | 910 | 1356 | 2.9e-161 | 569.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97374.t1 | A0A396ILR4 | 93.6 | 455 | 20 | 2 | 1 | 455 | 886 | 1331 | 1.9e-246 | 860.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene97374.t1 | TR | SNF2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97374.t1 | MTR_1g115215 | 29.167 | 168 | 108 | 5 | 272 | 438 | 871 | 1028 | 3.23e-17 | 85.1 |
| MS.gene97374.t1 | MTR_4g049500 | 28.758 | 153 | 105 | 2 | 260 | 411 | 753 | 902 | 8.29e-16 | 80.5 |
| MS.gene97374.t1 | MTR_7g089190 | 28.477 | 151 | 104 | 2 | 294 | 441 | 668 | 817 | 1.48e-14 | 76.6 |
| MS.gene97374.t1 | MTR_1g044120 | 31.624 | 117 | 79 | 1 | 293 | 408 | 1004 | 1120 | 1.54e-14 | 76.6 |
| MS.gene97374.t1 | MTR_2g012830 | 30.147 | 136 | 94 | 1 | 279 | 413 | 1135 | 1270 | 2.37e-14 | 76.3 |
| MS.gene97374.t1 | MTR_2g084630 | 22.028 | 286 | 147 | 8 | 137 | 418 | 785 | 998 | 1.46e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97374.t1 | AT3G54460 | 63.656 | 465 | 141 | 7 | 1 | 455 | 613 | 1059 | 0.0 | 574 |
| MS.gene97374.t1 | AT3G54460 | 63.656 | 465 | 141 | 7 | 1 | 455 | 910 | 1356 | 0.0 | 574 |
| MS.gene97374.t1 | AT1G50410 | 24.749 | 299 | 180 | 9 | 139 | 417 | 679 | 952 | 1.83e-16 | 82.8 |
| MS.gene97374.t1 | AT1G50410 | 24.749 | 299 | 180 | 9 | 139 | 417 | 679 | 952 | 1.83e-16 | 82.8 |
| MS.gene97374.t1 | AT1G50410 | 24.749 | 299 | 180 | 9 | 139 | 417 | 679 | 952 | 1.83e-16 | 82.8 |
| MS.gene97374.t1 | AT5G22750 | 21.329 | 286 | 149 | 6 | 137 | 418 | 792 | 1005 | 2.71e-16 | 82.4 |
| MS.gene97374.t1 | AT3G20010 | 23.843 | 281 | 193 | 6 | 139 | 414 | 485 | 749 | 3.83e-16 | 81.6 |
| MS.gene97374.t1 | AT3G20010 | 23.843 | 281 | 193 | 6 | 139 | 414 | 460 | 724 | 4.41e-16 | 81.3 |
| MS.gene97374.t1 | AT1G02670 | 32.479 | 117 | 78 | 1 | 294 | 409 | 539 | 655 | 5.18e-16 | 81.3 |
| MS.gene97374.t1 | AT1G02670 | 32.479 | 117 | 78 | 1 | 294 | 409 | 512 | 628 | 5.21e-16 | 80.9 |
| MS.gene97374.t1 | AT1G11100 | 26.601 | 203 | 137 | 4 | 249 | 450 | 934 | 1125 | 5.35e-16 | 81.3 |
| MS.gene97374.t1 | AT1G11100 | 26.601 | 203 | 137 | 4 | 249 | 450 | 890 | 1081 | 5.66e-16 | 81.3 |
| MS.gene97374.t1 | AT3G20010 | 23.843 | 281 | 193 | 6 | 139 | 414 | 751 | 1015 | 5.84e-16 | 81.3 |
| MS.gene97374.t1 | AT3G20010 | 23.843 | 281 | 193 | 6 | 139 | 414 | 751 | 1015 | 5.84e-16 | 81.3 |
| MS.gene97374.t1 | AT3G20010 | 23.843 | 281 | 193 | 6 | 139 | 414 | 751 | 1015 | 5.84e-16 | 81.3 |
| MS.gene97374.t1 | AT1G11100 | 26.601 | 203 | 137 | 4 | 249 | 450 | 1077 | 1268 | 6.63e-16 | 81.3 |
| MS.gene97374.t1 | AT1G11100 | 26.601 | 203 | 137 | 4 | 249 | 450 | 1076 | 1267 | 6.75e-16 | 81.3 |
| MS.gene97374.t1 | AT1G11100 | 26.601 | 203 | 137 | 4 | 249 | 450 | 1033 | 1224 | 7.04e-16 | 80.9 |
| MS.gene97374.t1 | AT1G02670 | 32.479 | 117 | 78 | 1 | 294 | 409 | 527 | 643 | 1.12e-15 | 80.1 |
| MS.gene97374.t1 | AT1G02670 | 32.479 | 117 | 78 | 1 | 294 | 409 | 516 | 632 | 1.12e-15 | 80.1 |
| MS.gene97374.t1 | AT1G05120 | 30.252 | 119 | 82 | 1 | 294 | 411 | 682 | 800 | 1.37e-15 | 80.1 |
| MS.gene97374.t1 | AT1G05120 | 30.252 | 119 | 82 | 1 | 294 | 411 | 725 | 843 | 1.42e-15 | 79.7 |
| MS.gene97374.t1 | AT1G61140 | 23.843 | 281 | 187 | 7 | 139 | 413 | 828 | 1087 | 4.82e-15 | 78.6 |
| MS.gene97374.t1 | AT1G61140 | 23.843 | 281 | 187 | 7 | 139 | 413 | 986 | 1245 | 5.15e-15 | 78.2 |
| MS.gene97374.t1 | AT5G43530 | 29.927 | 137 | 95 | 1 | 273 | 408 | 1108 | 1244 | 8.29e-15 | 77.8 |
| MS.gene97374.t1 | AT1G02670 | 31.068 | 103 | 70 | 1 | 294 | 395 | 512 | 614 | 1.12e-12 | 70.5 |
| MS.gene97374.t1 | AT1G02670 | 31.068 | 103 | 70 | 1 | 294 | 395 | 539 | 641 | 1.21e-12 | 70.5 |
| MS.gene97374.t1 | AT5G63950 | 29.134 | 127 | 87 | 2 | 285 | 408 | 722 | 848 | 1.10e-11 | 67.8 |
| MS.gene97374.t1 | AT5G63950 | 29.134 | 127 | 87 | 2 | 285 | 408 | 739 | 865 | 1.12e-11 | 67.8 |
Find 95 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGAATGAACAGGATAAT+TGG | 0.223532 | 3.1:-10619903 | MS.gene97374:intron |
| CTACGAAATTTCCATTGTTT+TGG | 0.236191 | 3.1:+10620506 | None:intergenic |
| CCAGAGGTTGAAAGCTTTGC+AGG | 0.299028 | 3.1:-10619833 | MS.gene97374:CDS |
| ATTTACCTTCTGTCCCAAAT+TGG | 0.311155 | 3.1:+10619203 | None:intergenic |
| TCTGGCCGTGCCATTGAATC+AGG | 0.311287 | 3.1:+10620074 | None:intergenic |
| AATGGTCTAGATTCTACTTC+AGG | 0.317795 | 3.1:-10620380 | MS.gene97374:CDS |
| AGGCTTTCATGCTGTGTTGC+TGG | 0.327727 | 3.1:-10620464 | MS.gene97374:CDS |
| CTAGATGTTGATTGCCAATC+AGG | 0.333695 | 3.1:+10619877 | None:intergenic |
| GTTAATGGTATCAAATATAC+TGG | 0.364522 | 3.1:-10619499 | MS.gene97374:CDS |
| TAATGCTACTTGAACATTCC+TGG | 0.371689 | 3.1:+10619713 | None:intergenic |
| TGCTGAAAGCAATTATCTAC+TGG | 0.373523 | 3.1:-10618526 | MS.gene97374:CDS |
| CCATACAACTTGAATCTTGC+TGG | 0.376123 | 3.1:+10619297 | None:intergenic |
| ATATGAACTCATCTCTTCAT+TGG | 0.383511 | 3.1:+10619807 | None:intergenic |
| CTTGGGGTACAAACCACTTT+GGG | 0.384011 | 3.1:+10620042 | None:intergenic |
| GCTAATGTTTCCACATGAAT+AGG | 0.389546 | 3.1:+10618862 | None:intergenic |
| TTGTAACTCAATAAGATCTT+GGG | 0.390486 | 3.1:+10620025 | None:intergenic |
| AAACAGGAGACTGTATCTTA+TGG | 0.393932 | 3.1:+10620346 | None:intergenic |
| GTTGTAACTCAATAAGATCT+TGG | 0.398290 | 3.1:+10620024 | None:intergenic |
| GTTGAATGAACAGGATAATT+GGG | 0.403727 | 3.1:-10619902 | MS.gene97374:intron |
| TGTTTGGTGGCCACTGTGTC+AGG | 0.403966 | 3.1:-10620328 | MS.gene97374:intron |
| CCTGCAAAGCTTTCAACCTC+TGG | 0.408088 | 3.1:+10619833 | None:intergenic |
| CCTTGTTGCTAGAATGCATT+GGG | 0.411990 | 3.1:+10619467 | None:intergenic |
| GGTACAAACCACTTTGGGTT+AGG | 0.416889 | 3.1:+10620047 | None:intergenic |
| CCAGCAAGATTCAAGTTGTA+TGG | 0.420133 | 3.1:-10619297 | MS.gene97374:CDS |
| ACTTGAATCTTGCTGGAACT+TGG | 0.421863 | 3.1:+10619304 | None:intergenic |
| TCATTCCGCATCATCATTCC+AGG | 0.431472 | 3.1:-10619731 | MS.gene97374:CDS |
| TTGGAATGATCCTTCGCATA+TGG | 0.445826 | 3.1:-10620543 | MS.gene97374:CDS |
| AGGATAATTGGGATCCTGAT+TGG | 0.449928 | 3.1:-10619891 | MS.gene97374:CDS |
| GATGGATGGGAGTGCTGCAT+TGG | 0.453061 | 3.1:-10619267 | MS.gene97374:CDS |
| ATAAGATACAGTCTCCTGTT+TGG | 0.458193 | 3.1:-10620344 | MS.gene97374:CDS |
| ATGGATGGGAGTGCTGCATT+GGG | 0.465054 | 3.1:-10619266 | MS.gene97374:CDS |
| TGTACACTTGGTCTTGTCAA+TGG | 0.468799 | 3.1:+10620133 | None:intergenic |
| TGTTCGGCGTAATATATTGA+TGG | 0.471628 | 3.1:-10620570 | MS.gene97374:CDS |
| TCTTGGGGTACAAACCACTT+TGG | 0.483540 | 3.1:+10620041 | None:intergenic |
| TGACACAGTGGCCACCAAAC+AGG | 0.484233 | 3.1:+10620330 | None:intergenic |
| ATGCATGATTAGTGCTAGAA+AGG | 0.486577 | 3.1:-10620687 | MS.gene97374:CDS |
| ATGGTCTAGATTCTACTTCA+GGG | 0.489153 | 3.1:-10620379 | MS.gene97374:CDS |
| ACACGCTGGAGAAGATATTC+AGG | 0.491050 | 3.1:-10620426 | MS.gene97374:CDS |
| AATTAGTCGTGCCCATCGTA+TGG | 0.491970 | 3.1:-10618896 | MS.gene97374:CDS |
| ACCTTGTTGCTAGAATGCAT+TGG | 0.503718 | 3.1:+10619466 | None:intergenic |
| GTAATATATTGATGGCTGAT+TGG | 0.511643 | 3.1:-10620562 | MS.gene97374:CDS |
| GATGCAGAGTCCTGATTCAA+TGG | 0.511929 | 3.1:-10620084 | MS.gene97374:CDS |
| TGGAGCCAATTTGGGACAGA+AGG | 0.516927 | 3.1:-10619208 | MS.gene97374:intron |
| TAATGAATTTCTTAGGTGCA+AGG | 0.518160 | 3.1:-10620216 | MS.gene97374:intron |
| AGCAGTGCCTGCGCATAAGA+AGG | 0.521163 | 3.1:+10620002 | None:intergenic |
| GTCGACATGGCGTAATGAAA+GGG | 0.524194 | 3.1:+10620180 | None:intergenic |
| AAGTTGTATGGCACTTCTGA+TGG | 0.526598 | 3.1:-10619285 | MS.gene97374:CDS |
| TATACATGTCATTGAACAGC+AGG | 0.533287 | 3.1:-10619638 | MS.gene97374:intron |
| AAAACAACTTTCTTGATGCA+TGG | 0.533458 | 3.1:+10620644 | None:intergenic |
| TGTCGACATGGCGTAATGAA+AGG | 0.537636 | 3.1:+10620179 | None:intergenic |
| ATGAGTTGGTACTCACTGTT+CGG | 0.540678 | 3.1:-10620586 | MS.gene97374:CDS |
| TTAGGTGCAAGGAATGGTGC+CGG | 0.554256 | 3.1:-10620205 | MS.gene97374:intron |
| CCCAATGCATTCTAGCAACA+AGG | 0.557176 | 3.1:-10619467 | MS.gene97374:intron |
| GTTACAACCTTCTTATGCGC+AGG | 0.562566 | 3.1:-10620009 | MS.gene97374:CDS |
| GTCTACTGAATCCAAAACAA+TGG | 0.568925 | 3.1:-10620517 | MS.gene97374:CDS |
| AGATACAGTCTCCTGTTTGG+TGG | 0.570067 | 3.1:-10620341 | MS.gene97374:CDS |
| TGTATGGCACTTCTGATGGA+TGG | 0.572943 | 3.1:-10619281 | MS.gene97374:CDS |
| CAGAAAATCCTAACCCAAAG+TGG | 0.573856 | 3.1:-10620055 | MS.gene97374:CDS |
| TGCGTCCCGTCCTATTCATG+TGG | 0.574636 | 3.1:-10618872 | MS.gene97374:CDS |
| TTCGAGGCAGAGATGGAAGA+AGG | 0.574892 | 3.1:-10620740 | None:intergenic |
| AGGCAGAGATGGAAGAAGGT+TGG | 0.579105 | 3.1:-10620736 | None:intergenic |
| ATTAGTCGTGCCCATCGTAT+GGG | 0.583520 | 3.1:-10618895 | MS.gene97374:CDS |
| AGAAGATATTCAGGAAACAA+TGG | 0.583877 | 3.1:-10620417 | MS.gene97374:CDS |
| TGTCAATGGAAACACAATCA+AGG | 0.590521 | 3.1:+10620147 | None:intergenic |
| GATGTTGTCAAATCTGAAGA+TGG | 0.590681 | 3.1:-10618582 | MS.gene97374:CDS |
| GACGGGACGCACCCATACGA+TGG | 0.591504 | 3.1:+10618884 | None:intergenic |
| AGTAGACTTTCCATATGCGA+AGG | 0.591925 | 3.1:+10620533 | None:intergenic |
| TGTTTCCACATGAATAGGAC+GGG | 0.593054 | 3.1:+10618867 | None:intergenic |
| TTGTCAAATCTGAAGATGGT+GGG | 0.595354 | 3.1:-10618578 | MS.gene97374:CDS |
| ATGGCGTAATGAAAGGGAGC+CGG | 0.600819 | 3.1:+10620186 | None:intergenic |
| TGCTAGAAGTTACAATGAGT+TGG | 0.601484 | 3.1:-10620600 | MS.gene97374:CDS |
| GTATGGCACTTCTGATGGAT+GGG | 0.602911 | 3.1:-10619280 | MS.gene97374:CDS |
| CAGAGGTTGAAAGCTTTGCA+GGG | 0.610511 | 3.1:-10619832 | MS.gene97374:CDS |
| AATTTCTTAGGTGCAAGGAA+TGG | 0.610878 | 3.1:-10620211 | MS.gene97374:intron |
| ACAACTTTCTTGATGCATGG+TGG | 0.612301 | 3.1:+10620647 | None:intergenic |
| ACGGGACGCACCCATACGAT+GGG | 0.612774 | 3.1:+10618885 | None:intergenic |
| CATATTAAAGTTACACACGC+TGG | 0.624968 | 3.1:-10620440 | MS.gene97374:CDS |
| ACAGCTAGGATATGTACACT+TGG | 0.625444 | 3.1:+10620121 | None:intergenic |
| ATGTTTCCACATGAATAGGA+CGG | 0.627738 | 3.1:+10618866 | None:intergenic |
| CAGGAGACTGTATCTTATGG+AGG | 0.634908 | 3.1:+10620349 | None:intergenic |
| TGGTCTAGATTCTACTTCAG+GGG | 0.641369 | 3.1:-10620378 | MS.gene97374:CDS |
| TGTCAAATCTGAAGATGGTG+GGG | 0.643211 | 3.1:-10618577 | MS.gene97374:CDS |
| AGAGTCCTGATTCAATGGCA+CGG | 0.648352 | 3.1:-10620079 | MS.gene97374:CDS |
| TCATACAAGTTATCACAGCT+AGG | 0.648492 | 3.1:+10620107 | None:intergenic |
| TGTAACTCAATAAGATCTTG+GGG | 0.649776 | 3.1:+10620026 | None:intergenic |
| GTGGAAACATTAGCTATGCG+TGG | 0.666167 | 3.1:-10618853 | MS.gene97374:CDS |
| AAACAATGGAAATTTCGTAG+TGG | 0.666896 | 3.1:-10620503 | MS.gene97374:CDS |
| GCGGAATGACTTGTGTGCAA+AGG | 0.667601 | 3.1:+10619745 | None:intergenic |
| GTCAAATCTGAAGATGGTGG+GGG | 0.669627 | 3.1:-10618576 | MS.gene97374:CDS |
| GTTGTCAAATCTGAAGATGG+TGG | 0.674583 | 3.1:-10618579 | MS.gene97374:CDS |
| AGGCACAACATATGTCGACA+TGG | 0.683756 | 3.1:+10620167 | None:intergenic |
| AAGTTGCATATCTCGTCCAG+AGG | 0.698811 | 3.1:-10619849 | MS.gene97374:CDS |
| ACATTCCTGGAATGATGATG+CGG | 0.709579 | 3.1:+10619726 | None:intergenic |
| AAGTAGCATTAGTACCAATG+TGG | 0.718006 | 3.1:-10619701 | MS.gene97374:CDS |
| AAGTATATTACCTGACACAG+TGG | 0.731295 | 3.1:+10620318 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAATAGATTTACAAA+TGG | + | chr3.1:10619648-10619667 | None:intergenic | 10.0% |
| !!! | ATCTATTATATTTTATTTGT+TGG | - | chr3.1:10619655-10619674 | MS.gene97374:CDS | 10.0% |
| !!! | TTTAATTTAATGAATTTCTT+AGG | - | chr3.1:10619014-10619033 | MS.gene97374:intron | 10.0% |
| !! | AAATAGAAACATGAATTATT+AGG | + | chr3.1:10620586-10620605 | None:intergenic | 15.0% |
| !!! | AAAATATCAAAACTTTTTCA+GGG | + | chr3.1:10619563-10619582 | None:intergenic | 15.0% |
| !!! | TAAATCTATATTTTCAGAAA+CGG | + | chr3.1:10619855-10619874 | None:intergenic | 15.0% |
| !!! | TGAAAATATAGATTTACTTT+TGG | - | chr3.1:10619859-10619878 | MS.gene97374:CDS | 15.0% |
| !! | ATTGTTTAATCAATTACAAC+AGG | + | chr3.1:10619693-10619712 | None:intergenic | 20.0% |
| !! | TTGTTAAACTAAATTTAGGA+TGG | + | chr3.1:10620474-10620493 | None:intergenic | 20.0% |
| !!! | GAAAATATCAAAACTTTTTC+AGG | + | chr3.1:10619564-10619583 | None:intergenic | 20.0% |
| !!! | GTGAAAATTTTAATTGAAGT+AGG | + | chr3.1:10620260-10620279 | None:intergenic | 20.0% |
| !!! | TAAATTTCTATTTTTCCAGT+TGG | - | chr3.1:10619713-10619732 | MS.gene97374:CDS | 20.0% |
| !!! | TCACTTGTTAAACTAAATTT+AGG | + | chr3.1:10620478-10620497 | None:intergenic | 20.0% |
| !!! | TGTTACACATGTATTTTTAA+TGG | - | chr3.1:10620009-10620028 | MS.gene97374:CDS | 20.0% |
| !!! | TGTTTTACTAGATTTTAATG+AGG | - | chr3.1:10618610-10618629 | MS.gene97374:CDS | 20.0% |
| !!! | TTTCATGTTGCTTTAATTTT+CGG | - | chr3.1:10618953-10618972 | MS.gene97374:intron | 20.0% |
| ! | ATGGATATGTTAGTGAAAAA+TGG | - | chr3.1:10618839-10618858 | MS.gene97374:CDS | 25.0% |
| ! | GAATTATTAGGACAAGAAAA+AGG | + | chr3.1:10620574-10620593 | None:intergenic | 25.0% |
| ! | GTTAATGGTATCAAATATAC+TGG | - | chr3.1:10619738-10619757 | MS.gene97374:CDS | 25.0% |
| ! | TTGTAACTCAATAAGATCTT+GGG | + | chr3.1:10619215-10619234 | None:intergenic | 25.0% |
| !! | ATTTTTAATGGAGCCAATTT+GGG | - | chr3.1:10620021-10620040 | MS.gene97374:CDS | 25.0% |
| !!! | ATTAAGCTGTTTTGCTTTAA+AGG | - | chr3.1:10620093-10620112 | MS.gene97374:CDS | 25.0% |
| !!! | TATTTTTAATGGAGCCAATT+TGG | - | chr3.1:10620020-10620039 | MS.gene97374:CDS | 25.0% |
| AAAACAACTTTCTTGATGCA+TGG | + | chr3.1:10618596-10618615 | None:intergenic | 30.0% | |
| AAACAATGGAAATTTCGTAG+TGG | - | chr3.1:10618734-10618753 | MS.gene97374:intron | 30.0% | |
| AAGAATCAGAAACAGAGAAT+AGG | + | chr3.1:10619819-10619838 | None:intergenic | 30.0% | |
| AGAAGATATTCAGGAAACAA+TGG | - | chr3.1:10618820-10618839 | MS.gene97374:CDS | 30.0% | |
| ATATGAACTCATCTCTTCAT+TGG | + | chr3.1:10619433-10619452 | None:intergenic | 30.0% | |
| ATCATCGTTTGCATATGAAT+CGG | + | chr3.1:10620068-10620087 | None:intergenic | 30.0% | |
| ATTACAACAGGATATGCAAA+TGG | + | chr3.1:10619681-10619700 | None:intergenic | 30.0% | |
| GATTTACAAATGGTCACAAT+TGG | + | chr3.1:10619638-10619657 | None:intergenic | 30.0% | |
| GTGGAGCTATAAAAAATGTA+AGG | - | chr3.1:10618753-10618772 | MS.gene97374:intron | 30.0% | |
| GTTGAATGAACAGGATAATT+GGG | - | chr3.1:10619335-10619354 | MS.gene97374:intron | 30.0% | |
| GTTGTAACTCAATAAGATCT+TGG | + | chr3.1:10619216-10619235 | None:intergenic | 30.0% | |
| TAATGAATTTCTTAGGTGCA+AGG | - | chr3.1:10619021-10619040 | MS.gene97374:intron | 30.0% | |
| TGTAACTCAATAAGATCTTG+GGG | + | chr3.1:10619214-10619233 | None:intergenic | 30.0% | |
| TGTTGAATGAACAGGATAAT+TGG | - | chr3.1:10619334-10619353 | MS.gene97374:intron | 30.0% | |
| TTAGTTTAACAAGTGATGCT+CGG | - | chr3.1:10620482-10620501 | MS.gene97374:CDS | 30.0% | |
| ! | CTACGAAATTTCCATTGTTT+TGG | + | chr3.1:10618734-10618753 | None:intergenic | 30.0% |
| ! | GCAAATGCTAGAATTTTTAC+AGG | - | chr3.1:10620419-10620438 | MS.gene97374:CDS | 30.0% |
| ! | GTAATATATTGATGGCTGAT+TGG | - | chr3.1:10618675-10618694 | MS.gene97374:intron | 30.0% |
| !! | TTGCTTTTGAATGTGTAAAC+TGG | - | chr3.1:10620170-10620189 | MS.gene97374:CDS | 30.0% |
| !!! | TACTTTTGGTTTCTGATCTT+TGG | - | chr3.1:10619873-10619892 | MS.gene97374:CDS | 30.0% |
| AAACAGGAGACTGTATCTTA+TGG | + | chr3.1:10618894-10618913 | None:intergenic | 35.0% | |
| AAGTAGCATTAGTACCAATG+TGG | - | chr3.1:10619536-10619555 | MS.gene97374:intron | 35.0% | |
| AAGTATATTACCTGACACAG+TGG | + | chr3.1:10618922-10618941 | None:intergenic | 35.0% | |
| AATGGTCTAGATTCTACTTC+AGG | - | chr3.1:10618857-10618876 | MS.gene97374:CDS | 35.0% | |
| AATTTCTTAGGTGCAAGGAA+TGG | - | chr3.1:10619026-10619045 | MS.gene97374:intron | 35.0% | |
| ATAAGATACAGTCTCCTGTT+TGG | - | chr3.1:10618893-10618912 | MS.gene97374:CDS | 35.0% | |
| ATGCATGATTAGTGCTAGAA+AGG | - | chr3.1:10618550-10618569 | MS.gene97374:CDS | 35.0% | |
| ATGGTCTAGATTCTACTTCA+GGG | - | chr3.1:10618858-10618877 | MS.gene97374:CDS | 35.0% | |
| ATGTTTCCACATGAATAGGA+CGG | + | chr3.1:10620374-10620393 | None:intergenic | 35.0% | |
| ATTTACCTTCTGTCCCAAAT+TGG | + | chr3.1:10620037-10620056 | None:intergenic | 35.0% | |
| CATATTAAAGTTACACACGC+TGG | - | chr3.1:10618797-10618816 | MS.gene97374:intron | 35.0% | |
| GATGTTGTCAAATCTGAAGA+TGG | - | chr3.1:10620655-10620674 | MS.gene97374:CDS | 35.0% | |
| GCTAATGTTTCCACATGAAT+AGG | + | chr3.1:10620378-10620397 | None:intergenic | 35.0% | |
| GTCTACTGAATCCAAAACAA+TGG | - | chr3.1:10618720-10618739 | MS.gene97374:intron | 35.0% | |
| GTTGTGATTGTTGAATGAAC+AGG | - | chr3.1:10619326-10619345 | MS.gene97374:intron | 35.0% | |
| TATACATGTCATTGAACAGC+AGG | - | chr3.1:10619599-10619618 | MS.gene97374:intron | 35.0% | |
| TCATACAAGTTATCACAGCT+AGG | + | chr3.1:10619133-10619152 | None:intergenic | 35.0% | |
| TGCTAGAAGTTACAATGAGT+TGG | - | chr3.1:10618637-10618656 | MS.gene97374:intron | 35.0% | |
| TGCTGAAAGCAATTATCTAC+TGG | - | chr3.1:10620711-10620730 | MS.gene97374:CDS | 35.0% | |
| TGTCAATGGAAACACAATCA+AGG | + | chr3.1:10619093-10619112 | None:intergenic | 35.0% | |
| TGTTCGGCGTAATATATTGA+TGG | - | chr3.1:10618667-10618686 | MS.gene97374:intron | 35.0% | |
| TTGAATAAAGCGACTGTTAG+TGG | - | chr3.1:10620203-10620222 | MS.gene97374:CDS | 35.0% | |
| TTGTCAAATCTGAAGATGGT+GGG | - | chr3.1:10620659-10620678 | MS.gene97374:CDS | 35.0% | |
| ! | CGAGTAAAACCTTTTCAGTA+TGG | - | chr3.1:10620308-10620327 | MS.gene97374:intron | 35.0% |
| ! | CTATTTCTTGACGTTCAACA+AGG | - | chr3.1:10620600-10620619 | MS.gene97374:CDS | 35.0% |
| ! | GTAAAACCTTTTCAGTATGG+AGG | - | chr3.1:10620311-10620330 | MS.gene97374:intron | 35.0% |
| ! | TAATGCTACTTGAACATTCC+TGG | + | chr3.1:10619527-10619546 | None:intergenic | 35.0% |
| ! | TTTTTCCAGTTGGCTGTTAA+TGG | - | chr3.1:10619723-10619742 | MS.gene97374:CDS | 35.0% |
| !!! | AGCTGTTTTGCTTTAAAGGA+TGG | - | chr3.1:10620097-10620116 | MS.gene97374:CDS | 35.0% |
| AAGTTGTATGGCACTTCTGA+TGG | - | chr3.1:10619952-10619971 | MS.gene97374:intron | 40.0% | |
| ACAACTTTCTTGATGCATGG+TGG | + | chr3.1:10618593-10618612 | None:intergenic | 40.0% | |
| ACAGCTAGGATATGTACACT+TGG | + | chr3.1:10619119-10619138 | None:intergenic | 40.0% | |
| ACCTTGTTGCTAGAATGCAT+TGG | + | chr3.1:10619774-10619793 | None:intergenic | 40.0% | |
| ACTTGAATCTTGCTGGAACT+TGG | + | chr3.1:10619936-10619955 | None:intergenic | 40.0% | |
| AGGACAAGAAAAAGGATAGC+AGG | + | chr3.1:10620566-10620585 | None:intergenic | 40.0% | |
| AGGATAATTGGGATCCTGAT+TGG | - | chr3.1:10619346-10619365 | MS.gene97374:intron | 40.0% | |
| AGTAGACTTTCCATATGCGA+AGG | + | chr3.1:10618707-10618726 | None:intergenic | 40.0% | |
| CAGAAAATCCTAACCCAAAG+TGG | - | chr3.1:10619182-10619201 | MS.gene97374:intron | 40.0% | |
| CCATACAACTTGAATCTTGC+TGG | + | chr3.1:10619943-10619962 | None:intergenic | 40.0% | |
| CCTTGTTGCTAGAATGCATT+GGG | + | chr3.1:10619773-10619792 | None:intergenic | 40.0% | |
| GGACAAGAAAAAGGATAGCA+GGG | + | chr3.1:10620565-10620584 | None:intergenic | 40.0% | |
| GTTGTCAAATCTGAAGATGG+TGG | - | chr3.1:10620658-10620677 | MS.gene97374:CDS | 40.0% | |
| TGATACCATTAACAGCCAAC+TGG | + | chr3.1:10619731-10619750 | None:intergenic | 40.0% | |
| TGATGCTCGGTTTCTTTGAT+TGG | - | chr3.1:10620495-10620514 | MS.gene97374:CDS | 40.0% | |
| TGGTCTAGATTCTACTTCAG+GGG | - | chr3.1:10618859-10618878 | MS.gene97374:CDS | 40.0% | |
| TGTCAAATCTGAAGATGGTG+GGG | - | chr3.1:10620660-10620679 | MS.gene97374:CDS | 40.0% | |
| TGTTTCCACATGAATAGGAC+GGG | + | chr3.1:10620373-10620392 | None:intergenic | 40.0% | |
| TTGGAATGATCCTTCGCATA+TGG | - | chr3.1:10618694-10618713 | MS.gene97374:intron | 40.0% | |
| ! | ACATTCCTGGAATGATGATG+CGG | + | chr3.1:10619514-10619533 | None:intergenic | 40.0% |
| ! | CTAGATGTTGATTGCCAATC+AGG | + | chr3.1:10619363-10619382 | None:intergenic | 40.0% |
| !! | ATGAGTTGGTACTCACTGTT+CGG | - | chr3.1:10618651-10618670 | MS.gene97374:intron | 40.0% |
| !! | CACTTTGGGTTAGGATTTTC+TGG | + | chr3.1:10619184-10619203 | None:intergenic | 40.0% |
| !! | CCAGCAAGATTCAAGTTGTA+TGG | - | chr3.1:10619940-10619959 | MS.gene97374:intron | 40.0% |
| !! | TGTACACTTGGTCTTGTCAA+TGG | + | chr3.1:10619107-10619126 | None:intergenic | 40.0% |
| !!! | AACTTTTTCAGGGACCACAT+TGG | + | chr3.1:10619553-10619572 | None:intergenic | 40.0% |
| AAGTTGCATATCTCGTCCAG+AGG | - | chr3.1:10619388-10619407 | MS.gene97374:intron | 45.0% | |
| AATTAGTCGTGCCCATCGTA+TGG | - | chr3.1:10620341-10620360 | MS.gene97374:CDS | 45.0% | |
| ACACGCTGGAGAAGATATTC+AGG | - | chr3.1:10618811-10618830 | MS.gene97374:intron | 45.0% | |
| AGAGTCCTGATTCAATGGCA+CGG | - | chr3.1:10619158-10619177 | MS.gene97374:intron | 45.0% | |
| AGATACAGTCTCCTGTTTGG+TGG | - | chr3.1:10618896-10618915 | MS.gene97374:CDS | 45.0% | |
| AGGCACAACATATGTCGACA+TGG | + | chr3.1:10619073-10619092 | None:intergenic | 45.0% | |
| ATTAGTCGTGCCCATCGTAT+GGG | - | chr3.1:10620342-10620361 | MS.gene97374:CDS | 45.0% | |
| CAGAGGTTGAAAGCTTTGCA+GGG | - | chr3.1:10619405-10619424 | MS.gene97374:intron | 45.0% | |
| CAGGAGACTGTATCTTATGG+AGG | + | chr3.1:10618891-10618910 | None:intergenic | 45.0% | |
| CCCAATGCATTCTAGCAACA+AGG | - | chr3.1:10619770-10619789 | MS.gene97374:CDS | 45.0% | |
| CTTGCTCCTCCATACTGAAA+AGG | + | chr3.1:10620320-10620339 | None:intergenic | 45.0% | |
| CTTGGGGTACAAACCACTTT+GGG | + | chr3.1:10619198-10619217 | None:intergenic | 45.0% | |
| GATCCTCTGTTTGCCCAATT+TGG | - | chr3.1:10620225-10620244 | MS.gene97374:intron | 45.0% | |
| GATGCAGAGTCCTGATTCAA+TGG | - | chr3.1:10619153-10619172 | MS.gene97374:intron | 45.0% | |
| GTCGACATGGCGTAATGAAA+GGG | + | chr3.1:10619060-10619079 | None:intergenic | 45.0% | |
| GTGGAAACATTAGCTATGCG+TGG | - | chr3.1:10620384-10620403 | MS.gene97374:CDS | 45.0% | |
| GTTACAACCTTCTTATGCGC+AGG | - | chr3.1:10619228-10619247 | MS.gene97374:CDS | 45.0% | |
| TAGGAGCCATCCACCAAATT+GGG | + | chr3.1:10620241-10620260 | None:intergenic | 45.0% | |
| TCATTCCGCATCATCATTCC+AGG | - | chr3.1:10619506-10619525 | MS.gene97374:CDS | 45.0% | |
| TCTTGGGGTACAAACCACTT+TGG | + | chr3.1:10619199-10619218 | None:intergenic | 45.0% | |
| TGTATGGCACTTCTGATGGA+TGG | - | chr3.1:10619956-10619975 | MS.gene97374:intron | 45.0% | |
| TGTCGACATGGCGTAATGAA+AGG | + | chr3.1:10619061-10619080 | None:intergenic | 45.0% | |
| ! | GGTACAAACCACTTTGGGTT+AGG | + | chr3.1:10619193-10619212 | None:intergenic | 45.0% |
| ! | GTATGGCACTTCTGATGGAT+GGG | - | chr3.1:10619957-10619976 | MS.gene97374:intron | 45.0% |
| ! | GTCAAATCTGAAGATGGTGG+GGG | - | chr3.1:10620661-10620680 | MS.gene97374:CDS | 45.0% |
| ! | TGTTTGCCCAATTTGGTGGA+TGG | - | chr3.1:10620232-10620251 | MS.gene97374:intron | 45.0% |
| AGGCTTTCATGCTGTGTTGC+TGG | - | chr3.1:10618773-10618792 | MS.gene97374:intron | 50.0% | |
| ATGGCGTAATGAAAGGGAGC+CGG | + | chr3.1:10619054-10619073 | None:intergenic | 50.0% | |
| CCACCAAATTGGGCAAACAG+AGG | + | chr3.1:10620231-10620250 | None:intergenic | 50.0% | |
| CCAGAGGTTGAAAGCTTTGC+AGG | - | chr3.1:10619404-10619423 | MS.gene97374:intron | 50.0% | |
| CCTCTGTTTGCCCAATTTGG+TGG | - | chr3.1:10620228-10620247 | MS.gene97374:intron | 50.0% | |
| CCTGCAAAGCTTTCAACCTC+TGG | + | chr3.1:10619407-10619426 | None:intergenic | 50.0% | |
| GTAGGAGCCATCCACCAAAT+TGG | + | chr3.1:10620242-10620261 | None:intergenic | 50.0% | |
| TTAGGTGCAAGGAATGGTGC+CGG | - | chr3.1:10619032-10619051 | MS.gene97374:intron | 50.0% | |
| ! | GCGGAATGACTTGTGTGCAA+AGG | + | chr3.1:10619495-10619514 | None:intergenic | 50.0% |
| ! | TGGAGCCAATTTGGGACAGA+AGG | - | chr3.1:10620029-10620048 | MS.gene97374:CDS | 50.0% |
| !! | ATGGATGGGAGTGCTGCATT+GGG | - | chr3.1:10619971-10619990 | MS.gene97374:intron | 50.0% |
| AGCAGTGCCTGCGCATAAGA+AGG | + | chr3.1:10619238-10619257 | None:intergenic | 55.0% | |
| TGACACAGTGGCCACCAAAC+AGG | + | chr3.1:10618910-10618929 | None:intergenic | 55.0% | |
| TGCGTCCCGTCCTATTCATG+TGG | - | chr3.1:10620365-10620384 | MS.gene97374:CDS | 55.0% | |
| ! | TCTGGCCGTGCCATTGAATC+AGG | + | chr3.1:10619166-10619185 | None:intergenic | 55.0% |
| ! | TGTTTGGTGGCCACTGTGTC+AGG | - | chr3.1:10618909-10618928 | MS.gene97374:CDS | 55.0% |
| !! | GATGGATGGGAGTGCTGCAT+TGG | - | chr3.1:10619970-10619989 | MS.gene97374:intron | 55.0% |
| ACGGGACGCACCCATACGAT+GGG | + | chr3.1:10620355-10620374 | None:intergenic | 60.0% | |
| !! | CTGAAGATGGTGGGGGACGA+GGG | - | chr3.1:10620668-10620687 | MS.gene97374:CDS | 60.0% |
| !! | TCTGAAGATGGTGGGGGACG+AGG | - | chr3.1:10620667-10620686 | MS.gene97374:CDS | 60.0% |
| GACGGGACGCACCCATACGA+TGG | + | chr3.1:10620356-10620375 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 10618509 | 10620750 | 10618509 | ID=MS.gene97374 |
| chr3.1 | mRNA | 10618509 | 10620750 | 10618509 | ID=MS.gene97374.t1;Parent=MS.gene97374 |
| chr3.1 | exon | 10620329 | 10620750 | 10620329 | ID=MS.gene97374.t1.exon1;Parent=MS.gene97374.t1 |
| chr3.1 | CDS | 10620329 | 10620750 | 10620329 | ID=cds.MS.gene97374.t1;Parent=MS.gene97374.t1 |
| chr3.1 | exon | 10619986 | 10620223 | 10619986 | ID=MS.gene97374.t1.exon2;Parent=MS.gene97374.t1 |
| chr3.1 | CDS | 10619986 | 10620223 | 10619986 | ID=cds.MS.gene97374.t1;Parent=MS.gene97374.t1 |
| chr3.1 | exon | 10619639 | 10619911 | 10619639 | ID=MS.gene97374.t1.exon3;Parent=MS.gene97374.t1 |
| chr3.1 | CDS | 10619639 | 10619911 | 10619639 | ID=cds.MS.gene97374.t1;Parent=MS.gene97374.t1 |
| chr3.1 | exon | 10619468 | 10619527 | 10619468 | ID=MS.gene97374.t1.exon4;Parent=MS.gene97374.t1 |
| chr3.1 | CDS | 10619468 | 10619527 | 10619468 | ID=cds.MS.gene97374.t1;Parent=MS.gene97374.t1 |
| chr3.1 | exon | 10619209 | 10619339 | 10619209 | ID=MS.gene97374.t1.exon5;Parent=MS.gene97374.t1 |
| chr3.1 | CDS | 10619209 | 10619339 | 10619209 | ID=cds.MS.gene97374.t1;Parent=MS.gene97374.t1 |
| chr3.1 | exon | 10618819 | 10618933 | 10618819 | ID=MS.gene97374.t1.exon6;Parent=MS.gene97374.t1 |
| chr3.1 | CDS | 10618819 | 10618933 | 10618819 | ID=cds.MS.gene97374.t1;Parent=MS.gene97374.t1 |
| chr3.1 | exon | 10618509 | 10618637 | 10618509 | ID=MS.gene97374.t1.exon7;Parent=MS.gene97374.t1 |
| chr3.1 | CDS | 10618509 | 10618637 | 10618509 | ID=cds.MS.gene97374.t1;Parent=MS.gene97374.t1 |
| Gene Sequence |
| Protein sequence |
