Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97380.t1 | XP_027345640.1 | 86.7 | 60 | 7 | 1 | 1 | 60 | 210 | 268 | 4.50E-20 | 107.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97380.t1 | P53681 | 83.3 | 60 | 9 | 1 | 1 | 60 | 225 | 283 | 1.2e-21 | 104.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97380.t1 | G7JMG6 | 86.7 | 60 | 7 | 1 | 1 | 60 | 214 | 272 | 3.3e-20 | 107.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97380.t1 | MTR_4g086660 | 86.667 | 60 | 7 | 1 | 1 | 60 | 214 | 272 | 3.34e-28 | 109 |
| MS.gene97380.t1 | MTR_8g079790 | 80.000 | 60 | 11 | 1 | 1 | 60 | 205 | 263 | 2.02e-25 | 101 |
| MS.gene97380.t1 | MTR_5g017830 | 73.333 | 60 | 15 | 1 | 1 | 60 | 211 | 269 | 7.93e-24 | 97.1 |
| MS.gene97380.t1 | MTR_3g092230 | 71.667 | 60 | 16 | 1 | 1 | 60 | 215 | 273 | 1.96e-23 | 95.9 |
| MS.gene97380.t1 | MTR_7g118020 | 71.667 | 60 | 16 | 1 | 1 | 60 | 221 | 279 | 4.12e-23 | 94.7 |
| MS.gene97380.t1 | MTR_7g089480 | 71.667 | 60 | 16 | 1 | 1 | 60 | 218 | 276 | 1.45e-22 | 93.2 |
| MS.gene97380.t1 | MTR_4g088560 | 74.419 | 43 | 11 | 0 | 104 | 146 | 117 | 159 | 7.13e-15 | 68.2 |
| MS.gene97380.t1 | MTR_5g022030 | 46.512 | 86 | 33 | 3 | 1 | 85 | 173 | 246 | 1.05e-14 | 70.9 |
| MS.gene97380.t1 | MTR_5g022030 | 46.512 | 86 | 33 | 3 | 1 | 85 | 173 | 246 | 1.08e-14 | 70.9 |
| MS.gene97380.t1 | MTR_5g092815 | 58.182 | 55 | 22 | 1 | 4 | 58 | 167 | 220 | 7.61e-14 | 68.2 |
| MS.gene97380.t1 | MTR_1g026075 | 51.852 | 54 | 25 | 1 | 7 | 60 | 153 | 205 | 1.11e-12 | 63.5 |
| MS.gene97380.t1 | MTR_3g051770 | 55.556 | 54 | 23 | 1 | 4 | 57 | 160 | 212 | 1.32e-12 | 64.7 |
| MS.gene97380.t1 | MTR_5g092810 | 54.386 | 57 | 25 | 1 | 4 | 60 | 168 | 223 | 1.70e-12 | 64.3 |
| MS.gene97380.t1 | MTR_1g026190 | 56.604 | 53 | 20 | 1 | 8 | 57 | 158 | 210 | 2.79e-12 | 63.5 |
| MS.gene97380.t1 | MTR_7g068710 | 56.604 | 53 | 22 | 1 | 8 | 60 | 136 | 187 | 1.18e-11 | 62.0 |
| MS.gene97380.t1 | MTR_7g091890 | 55.556 | 54 | 23 | 1 | 7 | 60 | 137 | 189 | 1.68e-11 | 61.2 |
| MS.gene97380.t1 | MTR_7g091890 | 55.556 | 54 | 23 | 1 | 7 | 60 | 137 | 189 | 1.98e-11 | 61.2 |
| MS.gene97380.t1 | MTR_1g052530 | 56.000 | 50 | 21 | 1 | 8 | 57 | 132 | 180 | 4.03e-11 | 60.5 |
| MS.gene97380.t1 | MTR_4g107490 | 56.604 | 53 | 22 | 1 | 8 | 60 | 153 | 204 | 5.70e-11 | 60.1 |
| MS.gene97380.t1 | MTR_5g009830 | 41.111 | 90 | 41 | 2 | 8 | 97 | 147 | 224 | 6.12e-11 | 59.7 |
| MS.gene97380.t1 | MTR_5g009830 | 40.659 | 91 | 42 | 2 | 7 | 97 | 146 | 224 | 6.89e-11 | 59.7 |
| MS.gene97380.t1 | MTR_8g095440 | 43.038 | 79 | 33 | 2 | 7 | 85 | 109 | 175 | 7.26e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97380.t1 | AT3G50530 | 78.333 | 60 | 12 | 1 | 1 | 60 | 225 | 283 | 1.83e-25 | 101 |
| MS.gene97380.t1 | AT3G50530 | 78.333 | 60 | 12 | 1 | 1 | 60 | 225 | 283 | 1.92e-25 | 101 |
| MS.gene97380.t1 | AT3G19100 | 78.333 | 60 | 12 | 1 | 1 | 60 | 221 | 279 | 5.21e-25 | 100 |
| MS.gene97380.t1 | AT2G41140 | 76.667 | 60 | 13 | 1 | 1 | 60 | 200 | 258 | 5.14e-24 | 97.4 |
| MS.gene97380.t1 | AT1G49580 | 81.132 | 53 | 10 | 0 | 8 | 60 | 233 | 285 | 6.50e-24 | 97.1 |
| MS.gene97380.t1 | AT2G46700 | 73.333 | 60 | 15 | 1 | 1 | 60 | 39 | 97 | 2.39e-23 | 94.7 |
| MS.gene97380.t1 | AT2G46700 | 73.333 | 60 | 15 | 1 | 1 | 60 | 39 | 97 | 2.39e-23 | 94.7 |
| MS.gene97380.t1 | AT2G46700 | 73.333 | 60 | 15 | 1 | 1 | 60 | 220 | 278 | 4.53e-23 | 94.7 |
| MS.gene97380.t1 | AT3G56760 | 73.333 | 60 | 15 | 1 | 1 | 60 | 201 | 259 | 1.13e-22 | 93.6 |
| MS.gene97380.t1 | AT5G24430 | 68.421 | 57 | 18 | 0 | 4 | 60 | 222 | 278 | 2.75e-19 | 84.0 |
| MS.gene97380.t1 | AT3G49370 | 66.667 | 57 | 19 | 0 | 4 | 60 | 221 | 277 | 4.20e-19 | 83.6 |
| MS.gene97380.t1 | AT2G17890 | 48.837 | 86 | 31 | 3 | 1 | 85 | 182 | 255 | 1.13e-15 | 73.6 |
| MS.gene97380.t1 | AT5G66210 | 57.377 | 61 | 24 | 2 | 1 | 60 | 136 | 195 | 6.45e-15 | 71.2 |
| MS.gene97380.t1 | AT5G66210 | 57.377 | 61 | 24 | 2 | 1 | 60 | 136 | 195 | 6.96e-15 | 71.2 |
| MS.gene97380.t1 | AT5G66210 | 57.377 | 61 | 24 | 2 | 1 | 60 | 136 | 195 | 7.29e-15 | 71.2 |
| MS.gene97380.t1 | AT5G66210 | 57.377 | 61 | 24 | 2 | 1 | 60 | 136 | 195 | 7.29e-15 | 71.2 |
| MS.gene97380.t1 | AT5G66210 | 57.377 | 61 | 24 | 2 | 1 | 60 | 136 | 195 | 7.67e-15 | 71.2 |
| MS.gene97380.t1 | AT5G66210 | 57.377 | 61 | 24 | 2 | 1 | 60 | 136 | 195 | 7.67e-15 | 71.2 |
| MS.gene97380.t1 | AT4G36070 | 45.349 | 86 | 34 | 3 | 1 | 85 | 145 | 218 | 4.16e-14 | 68.9 |
| MS.gene97380.t1 | AT4G36070 | 45.349 | 86 | 34 | 3 | 1 | 85 | 145 | 218 | 5.30e-14 | 68.9 |
| MS.gene97380.t1 | AT1G76040 | 60.000 | 50 | 19 | 1 | 8 | 57 | 192 | 240 | 4.79e-13 | 65.9 |
| MS.gene97380.t1 | AT1G76040 | 60.000 | 50 | 19 | 1 | 8 | 57 | 192 | 240 | 4.90e-13 | 65.9 |
| MS.gene97380.t1 | AT5G12480 | 59.259 | 54 | 21 | 1 | 7 | 60 | 138 | 190 | 5.04e-13 | 65.9 |
| MS.gene97380.t1 | AT1G50700 | 62.000 | 50 | 18 | 1 | 8 | 57 | 153 | 201 | 8.26e-13 | 65.5 |
| MS.gene97380.t1 | AT5G19450 | 59.259 | 54 | 21 | 1 | 7 | 60 | 136 | 188 | 9.97e-13 | 65.1 |
| MS.gene97380.t1 | AT5G19450 | 59.259 | 54 | 21 | 1 | 7 | 60 | 136 | 188 | 9.97e-13 | 65.1 |
| MS.gene97380.t1 | AT1G50700 | 58.491 | 53 | 21 | 1 | 8 | 60 | 153 | 204 | 3.70e-12 | 63.5 |
| MS.gene97380.t1 | AT4G04720 | 58.000 | 50 | 20 | 1 | 8 | 57 | 160 | 208 | 4.02e-12 | 63.2 |
| MS.gene97380.t1 | AT4G04720 | 58.000 | 50 | 20 | 1 | 8 | 57 | 160 | 208 | 4.02e-12 | 63.2 |
| MS.gene97380.t1 | AT1G50700 | 57.407 | 54 | 22 | 1 | 7 | 60 | 152 | 204 | 4.16e-12 | 63.2 |
| MS.gene97380.t1 | AT1G61950 | 56.000 | 50 | 21 | 1 | 8 | 57 | 178 | 226 | 9.07e-12 | 62.4 |
| MS.gene97380.t1 | AT5G23580 | 46.835 | 79 | 30 | 2 | 7 | 85 | 101 | 167 | 1.02e-11 | 62.0 |
| MS.gene97380.t1 | AT3G20410 | 53.704 | 54 | 24 | 1 | 7 | 60 | 170 | 222 | 1.21e-11 | 62.0 |
| MS.gene97380.t1 | AT3G20410 | 53.704 | 54 | 24 | 1 | 7 | 60 | 170 | 222 | 1.21e-11 | 62.0 |
| MS.gene97380.t1 | AT2G31500 | 53.333 | 60 | 26 | 2 | 1 | 60 | 140 | 197 | 1.26e-11 | 62.0 |
| MS.gene97380.t1 | AT4G21940 | 56.000 | 50 | 21 | 1 | 8 | 57 | 182 | 230 | 1.87e-11 | 61.2 |
| MS.gene97380.t1 | AT4G21940 | 56.000 | 50 | 21 | 1 | 8 | 57 | 182 | 230 | 1.92e-11 | 61.2 |
| MS.gene97380.t1 | AT4G21940 | 56.000 | 50 | 21 | 1 | 8 | 57 | 182 | 230 | 1.93e-11 | 61.2 |
| MS.gene97380.t1 | AT3G57530 | 56.604 | 53 | 22 | 1 | 8 | 60 | 143 | 194 | 2.18e-11 | 61.2 |
| MS.gene97380.t1 | AT3G57530 | 56.604 | 53 | 22 | 1 | 8 | 60 | 143 | 194 | 2.19e-11 | 61.2 |
| MS.gene97380.t1 | AT3G51850 | 54.717 | 53 | 23 | 1 | 8 | 60 | 134 | 185 | 2.50e-11 | 60.8 |
| MS.gene97380.t1 | AT2G41860 | 53.704 | 54 | 24 | 1 | 7 | 60 | 133 | 185 | 2.74e-11 | 60.8 |
| MS.gene97380.t1 | AT2G41860 | 53.704 | 54 | 24 | 1 | 7 | 60 | 133 | 185 | 2.80e-11 | 60.8 |
| MS.gene97380.t1 | AT3G51850 | 54.717 | 53 | 23 | 1 | 8 | 60 | 134 | 185 | 3.59e-11 | 60.5 |
| MS.gene97380.t1 | AT3G51850 | 53.704 | 54 | 24 | 1 | 7 | 60 | 133 | 185 | 3.59e-11 | 60.5 |
| MS.gene97380.t1 | AT4G04740 | 53.846 | 52 | 23 | 1 | 7 | 58 | 148 | 198 | 5.70e-11 | 60.1 |
| MS.gene97380.t1 | AT4G04740 | 53.846 | 52 | 23 | 1 | 7 | 58 | 148 | 198 | 6.18e-11 | 60.1 |
| MS.gene97380.t1 | AT4G04740 | 53.846 | 52 | 23 | 1 | 7 | 58 | 148 | 198 | 6.18e-11 | 60.1 |
| MS.gene97380.t1 | AT4G04740 | 53.846 | 52 | 23 | 1 | 7 | 58 | 148 | 198 | 6.18e-11 | 60.1 |
| MS.gene97380.t1 | AT4G04740 | 53.846 | 52 | 23 | 1 | 7 | 58 | 148 | 198 | 6.18e-11 | 60.1 |
| MS.gene97380.t1 | AT4G04740 | 53.846 | 52 | 23 | 1 | 7 | 58 | 148 | 198 | 6.18e-11 | 60.1 |
| MS.gene97380.t1 | AT4G04740 | 53.846 | 52 | 23 | 1 | 7 | 58 | 148 | 198 | 6.18e-11 | 60.1 |
Find 29 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCAACAGTCACGTTTGTT+GGG | 0.299044 | 3.1:-10491870 | None:intergenic |
| CGCTGATTGCGACTGTTAGA+AGG | 0.331694 | 3.1:-10491919 | None:intergenic |
| AACTCTTCATTTGCGACTGT+TGG | 0.374249 | 3.1:+10491776 | MS.gene97380:CDS |
| CCCCAACAAACGTGACTGTT+GGG | 0.392125 | 3.1:+10491869 | MS.gene97380:CDS |
| TCCCCAACAGTCACGTTTGT+TGG | 0.397482 | 3.1:-10491871 | None:intergenic |
| TCAACAACAGACTGAAACTT+TGG | 0.406207 | 3.1:-10491219 | None:intergenic |
| GCCGCTCCAACTGCCGCAAA+AGG | 0.436342 | 3.1:-10491813 | None:intergenic |
| ACTCTTCATTTGCGACTGTT+GGG | 0.448333 | 3.1:+10491777 | MS.gene97380:CDS |
| ACCCCAACAAACGTGACTGT+TGG | 0.491561 | 3.1:+10491868 | MS.gene97380:CDS |
| CCCAACAGTCACGTTTGTTG+GGG | 0.500328 | 3.1:-10491869 | None:intergenic |
| GACGTTTCAGGTTATGTGAA+GGG | 0.515873 | 3.1:+10490742 | MS.gene97380:intron |
| CACGATCCATGCACTTCTAT+CGG | 0.521104 | 3.1:-10491262 | None:intergenic |
| GCTGATTGCGACTGTTAGAA+GGG | 0.548833 | 3.1:-10491918 | None:intergenic |
| TATTTGTACCATGACAGCCT+TGG | 0.549299 | 3.1:-10491021 | None:intergenic |
| AGATGATGCCAAGGCTGTCA+TGG | 0.554908 | 3.1:+10491013 | MS.gene97380:CDS |
| CGACGTTTCAGGTTATGTGA+AGG | 0.570325 | 3.1:+10490741 | MS.gene97380:intron |
| AAAGTTTCAGTCTGTTGTTG+AGG | 0.571170 | 3.1:+10491221 | MS.gene97380:CDS |
| ACGTTTCAGGTTATGTGAAG+GGG | 0.578083 | 3.1:+10490743 | MS.gene97380:intron |
| TGGAGCGGCTGTTCCACGAA+GGG | 0.587349 | 3.1:+10491827 | MS.gene97380:CDS |
| TGAAACTTTGGTGTAAGCAT+AGG | 0.589679 | 3.1:-10491207 | None:intergenic |
| CCCAACAAACGTGACTGTTG+GGG | 0.598159 | 3.1:+10491870 | MS.gene97380:CDS |
| TTGGAGCGGCTGTTCCACGA+AGG | 0.600775 | 3.1:+10491826 | MS.gene97380:CDS |
| ATACTCAGAAGATGATGCCA+AGG | 0.618920 | 3.1:+10491004 | MS.gene97380:CDS |
| CGTTTCAGGTTATGTGAAGG+GGG | 0.632420 | 3.1:+10490744 | MS.gene97380:intron |
| GTTGAGGATAGCAGCAGATG+CGG | 0.641502 | 3.1:+10491237 | MS.gene97380:CDS |
| GCGGTACCGATAGAAGTGCA+TGG | 0.643356 | 3.1:+10491256 | MS.gene97380:CDS |
| TATTAGACATGATACTGTCA+AGG | 0.648573 | 3.1:+10490772 | MS.gene97380:CDS |
| GCACAGAGATCTTAAGCCTG+AGG | 0.658568 | 3.1:+10491082 | MS.gene97380:CDS |
| AAATGTATGTAGTGACACCA+AGG | 0.670047 | 3.1:+10490620 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATATATTTATTTAAAT+TGG | + | chr3.1:10491526-10491545 | MS.gene97380:intron | 0.0% |
| !!! | TAAATTTTTTTTAAAAAAAA+TGG | - | chr3.1:10491706-10491725 | None:intergenic | 0.0% |
| !! | AAAAAAAATAAAATTGAATG+GGG | - | chr3.1:10491564-10491583 | None:intergenic | 10.0% |
| !! | AATCATATTTAAATATCTTA+GGG | + | chr3.1:10491162-10491181 | MS.gene97380:intron | 10.0% |
| !! | TAATCATATTTAAATATCTT+AGG | + | chr3.1:10491161-10491180 | MS.gene97380:intron | 10.0% |
| !!! | ATATTACTTAATCTAATTTT+TGG | + | chr3.1:10491351-10491370 | MS.gene97380:intron | 10.0% |
| !!! | TAAAAAAAAATGGTTTTGAA+GGG | - | chr3.1:10491632-10491651 | None:intergenic | 15.0% |
| !!! | TTAAAAAAAAATGGTTTTGA+AGG | - | chr3.1:10491633-10491652 | None:intergenic | 15.0% |
| !!! | TTAAAAAAAATGGTTTTGAA+GGG | - | chr3.1:10491696-10491715 | None:intergenic | 15.0% |
| !!! | TTTAAAAAAAATGGTTTTGA+AGG | - | chr3.1:10491697-10491716 | None:intergenic | 15.0% |
| !! | GTAATATTCCTAAATATTGT+TGG | - | chr3.1:10491338-10491357 | None:intergenic | 20.0% |
| !!! | AAAAAAAAATGGTTTTGAAG+GGG | - | chr3.1:10491631-10491650 | None:intergenic | 20.0% |
| ! | CAGATATATCTATTGTAATG+AGG | + | chr3.1:10491295-10491314 | MS.gene97380:intron | 25.0% |
| ! | TTAAACCTAATAAATCACCT+TGG | - | chr3.1:10490640-10490659 | None:intergenic | 25.0% |
| ATGAAAAACCAATACACTAG+TGG | - | chr3.1:10491399-10491418 | None:intergenic | 30.0% | |
| ATGATTTATTGCTTCTTCAG+AGG | + | chr3.1:10490975-10490994 | MS.gene97380:intron | 30.0% | |
| TATTAGACATGATACTGTCA+AGG | + | chr3.1:10490772-10490791 | MS.gene97380:CDS | 30.0% | |
| TATTCCTAAATATTGTTGGC+CGG | - | chr3.1:10491334-10491353 | None:intergenic | 30.0% | |
| TCTTTCATTTGTCTTTCAGA+TGG | + | chr3.1:10491113-10491132 | MS.gene97380:intron | 30.0% | |
| TGAAAAACCAATACACTAGT+GGG | - | chr3.1:10491398-10491417 | None:intergenic | 30.0% | |
| TGAAGAAGCAATAAATCATG+TGG | - | chr3.1:10490974-10490993 | None:intergenic | 30.0% | |
| !!! | AGTTTTCACTTGGTTTTGAA+GGG | - | chr3.1:10491760-10491779 | None:intergenic | 30.0% |
| AAAGTTTCAGTCTGTTGTTG+AGG | + | chr3.1:10491221-10491240 | MS.gene97380:CDS | 35.0% | |
| AACTTAACATTTGCGACTGT+TGG | + | chr3.1:10491591-10491610 | MS.gene97380:intron | 35.0% | |
| AATTCAACATTTGCGACTGT+TGG | + | chr3.1:10491656-10491675 | MS.gene97380:intron | 35.0% | |
| ATGAAAGATATGTTCACCTC+AGG | - | chr3.1:10491101-10491120 | None:intergenic | 35.0% | |
| ATGATTACCCACTAGTGTAT+TGG | + | chr3.1:10491388-10491407 | MS.gene97380:intron | 35.0% | |
| ATTTATTGCTTCTTCAGAGG+AGG | + | chr3.1:10490978-10490997 | MS.gene97380:intron | 35.0% | |
| TAAATCATGTGGCTAGTAAG+TGG | - | chr3.1:10490963-10490982 | None:intergenic | 35.0% | |
| TCAACAACAGACTGAAACTT+TGG | - | chr3.1:10491222-10491241 | None:intergenic | 35.0% | |
| TGACACCAAGGTGATTTATT+AGG | + | chr3.1:10490632-10490651 | MS.gene97380:intron | 35.0% | |
| TTTATTGCTTCTTCAGAGGA+GGG | + | chr3.1:10490979-10490998 | MS.gene97380:intron | 35.0% | |
| ! | GCAAATGAAGAGTTTTCACT+TGG | - | chr3.1:10491770-10491789 | None:intergenic | 35.0% |
| ! | GTTGCATTTTGTCATCTTCA+GGG | + | chr3.1:10491053-10491072 | MS.gene97380:CDS | 35.0% |
| ! | TGAAACTTTGGTGTAAGCAT+AGG | - | chr3.1:10491210-10491229 | None:intergenic | 35.0% |
| ! | TGTTGCATTTTGTCATCTTC+AGG | + | chr3.1:10491052-10491071 | MS.gene97380:CDS | 35.0% |
| ! | TTTTCCGGCCAACAATATTT+AGG | + | chr3.1:10491327-10491346 | MS.gene97380:intron | 35.0% |
| !!! | GAGTTTTCACTTGGTTTTGA+AGG | - | chr3.1:10491761-10491780 | None:intergenic | 35.0% |
| !!! | GTTTTCACTTGGTTTTGAAG+GGG | - | chr3.1:10491759-10491778 | None:intergenic | 35.0% |
| AACATTTGCGACTGTTGTGA+AGG | + | chr3.1:10491725-10491744 | MS.gene97380:intron | 40.0% | |
| AACTCTTCATTTGCGACTGT+TGG | + | chr3.1:10491776-10491795 | MS.gene97380:CDS | 40.0% | |
| ACATTTGCGACTGTTGTGAA+GGG | + | chr3.1:10491726-10491745 | MS.gene97380:intron | 40.0% | |
| ACTCTTCATTTGCGACTGTT+GGG | + | chr3.1:10491777-10491796 | MS.gene97380:CDS | 40.0% | |
| ATACTCAGAAGATGATGCCA+AGG | + | chr3.1:10491004-10491023 | MS.gene97380:CDS | 40.0% | |
| CTGAATACTATCGACGTTTC+AGG | + | chr3.1:10490730-10490749 | MS.gene97380:intron | 40.0% | |
| TATTTGTACCATGACAGCCT+TGG | - | chr3.1:10491024-10491043 | None:intergenic | 40.0% | |
| ! | ATGAGGCTCTTCAACTTTTC+CGG | + | chr3.1:10491312-10491331 | MS.gene97380:intron | 40.0% |
| ! | ATTTTGTCATCTTCAGGGTG+TGG | + | chr3.1:10491058-10491077 | MS.gene97380:CDS | 40.0% |
| !! | ACGTTTCAGGTTATGTGAAG+GGG | + | chr3.1:10490743-10490762 | MS.gene97380:intron | 40.0% |
| !! | GACGTTTCAGGTTATGTGAA+GGG | + | chr3.1:10490742-10490761 | MS.gene97380:intron | 40.0% |
| CACGATCCATGCACTTCTAT+CGG | - | chr3.1:10491265-10491284 | None:intergenic | 45.0% | |
| GCATGAAATAGAGCCGCTAT+CGG | + | chr3.1:10490815-10490834 | MS.gene97380:intron | 45.0% | |
| TTGAAATAACGCCGCTAACG+CGG | - | chr3.1:10490909-10490928 | None:intergenic | 45.0% | |
| ! | AACTGTCGCAACACCTTTTG+CGG | + | chr3.1:10491800-10491819 | MS.gene97380:CDS | 45.0% |
| ! | ACATTTGCGACTGTTGGTGA+AGG | + | chr3.1:10491597-10491616 | MS.gene97380:intron | 45.0% |
| ! | CATTTGCGACTGTTGGTGAA+GGG | + | chr3.1:10491598-10491617 | MS.gene97380:intron | 45.0% |
| !! | CGACGTTTCAGGTTATGTGA+AGG | + | chr3.1:10490741-10490760 | MS.gene97380:intron | 45.0% |
| !! | CGTTTCAGGTTATGTGAAGG+GGG | + | chr3.1:10490744-10490763 | MS.gene97380:intron | 45.0% |
| !! | AAAAAAAAAATAAAATTGAA+TGG | - | chr3.1:10491566-10491585 | None:intergenic | 5.0% |
| !! | AAAAAAAAATAAAATTGAAT+GGG | - | chr3.1:10491565-10491584 | None:intergenic | 5.0% |
| !!! | TGAATTTTTTTAAAAAAAAA+TGG | - | chr3.1:10491642-10491661 | None:intergenic | 5.0% |
| ACCCCAACAAACGTGACTGT+TGG | + | chr3.1:10491868-10491887 | MS.gene97380:CDS | 50.0% | |
| AGATGATGCCAAGGCTGTCA+TGG | + | chr3.1:10491013-10491032 | MS.gene97380:CDS | 50.0% | |
| CATGTGGCTAGTAAGTGGCA+AGG | - | chr3.1:10490958-10490977 | None:intergenic | 50.0% | |
| CCCAACAAACGTGACTGTTG+GGG | + | chr3.1:10491870-10491889 | MS.gene97380:CDS | 50.0% | |
| CCCCAACAAACGTGACTGTT+GGG | + | chr3.1:10491869-10491888 | MS.gene97380:CDS | 50.0% | |
| CCCCAACAGTCACGTTTGTT+GGG | - | chr3.1:10491873-10491892 | None:intergenic | 50.0% | |
| GCACAGAGATCTTAAGCCTG+AGG | + | chr3.1:10491082-10491101 | MS.gene97380:CDS | 50.0% | |
| GTTGAGGATAGCAGCAGATG+CGG | + | chr3.1:10491237-10491256 | MS.gene97380:CDS | 50.0% | |
| TCCCCAACAGTCACGTTTGT+TGG | - | chr3.1:10491874-10491893 | None:intergenic | 50.0% | |
| TGCTCACTTCTGTGGTGAGA+CGG | - | chr3.1:10490873-10490892 | None:intergenic | 50.0% | |
| ! | CCCAACAGTCACGTTTGTTG+GGG | - | chr3.1:10491872-10491891 | None:intergenic | 50.0% |
| CTCACCACAGAAGTGAGCAG+CGG | + | chr3.1:10490874-10490893 | MS.gene97380:intron | 55.0% | |
| TGTGGTGAGACGGTGCATGT+GGG | - | chr3.1:10490863-10490882 | None:intergenic | 55.0% | |
| ! | ACCTTTTGCGGCAGTTGGAG+CGG | + | chr3.1:10491812-10491831 | MS.gene97380:CDS | 55.0% |
| ! | CTGTCTTTTGCGACCCTTCG+TGG | - | chr3.1:10491843-10491862 | None:intergenic | 55.0% |
| ! | GCAACACCTTTTGCGGCAGT+TGG | + | chr3.1:10491807-10491826 | MS.gene97380:CDS | 55.0% |
| ! | TGCGACTGTTGGTGAAGGGT+CGG | + | chr3.1:10491602-10491621 | MS.gene97380:intron | 55.0% |
| !! | GCGGTACCGATAGAAGTGCA+TGG | + | chr3.1:10491256-10491275 | MS.gene97380:CDS | 55.0% |
| ATGGCCGCTGCTCACTTCTG+TGG | - | chr3.1:10490881-10490900 | None:intergenic | 60.0% | |
| CTGTGGTGAGACGGTGCATG+TGG | - | chr3.1:10490864-10490883 | None:intergenic | 60.0% | |
| GGCCATCATAGCCGCGTTAG+CGG | + | chr3.1:10490895-10490914 | MS.gene97380:intron | 60.0% | |
| GTGGTGAGACGGTGCATGTG+GGG | - | chr3.1:10490862-10490881 | None:intergenic | 60.0% | |
| TGGAGCGGCTGTTCCACGAA+GGG | + | chr3.1:10491827-10491846 | MS.gene97380:CDS | 60.0% | |
| TGGTGAGACGGTGCATGTGG+GGG | - | chr3.1:10490861-10490880 | None:intergenic | 60.0% | |
| TTGGAGCGGCTGTTCCACGA+AGG | + | chr3.1:10491826-10491845 | MS.gene97380:CDS | 60.0% | |
| CATGTGGGGGAGGTCACCCA+CGG | - | chr3.1:10490848-10490867 | None:intergenic | 65.0% | |
| CGCCGCTAACGCGGCTATGA+TGG | - | chr3.1:10490900-10490919 | None:intergenic | 65.0% | |
| GCCGCTCCAACTGCCGCAAA+AGG | - | chr3.1:10491816-10491835 | None:intergenic | 65.0% | |
| TGAGACGGTGCATGTGGGGG+AGG | - | chr3.1:10490858-10490877 | None:intergenic | 65.0% | |
| CGCTATCGGCGCAGTGCCGT+GGG | + | chr3.1:10490829-10490848 | MS.gene97380:intron | 70.0% | |
| ! | CCACGGCACTGCGCCGATAG+CGG | - | chr3.1:10490831-10490850 | None:intergenic | 70.0% |
| CCGCTATCGGCGCAGTGCCG+TGG | + | chr3.1:10490828-10490847 | MS.gene97380:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 10490622 | 10491926 | 10490622 | ID=MS.gene97380 |
| chr3.1 | mRNA | 10490622 | 10491926 | 10490622 | ID=MS.gene97380.t1;Parent=MS.gene97380 |
| chr3.1 | exon | 10490622 | 10490641 | 10490622 | ID=MS.gene97380.t1.exon1;Parent=MS.gene97380.t1 |
| chr3.1 | CDS | 10490622 | 10490641 | 10490622 | ID=cds.MS.gene97380.t1;Parent=MS.gene97380.t1 |
| chr3.1 | exon | 10490752 | 10490793 | 10490752 | ID=MS.gene97380.t1.exon2;Parent=MS.gene97380.t1 |
| chr3.1 | CDS | 10490752 | 10490793 | 10490752 | ID=cds.MS.gene97380.t1;Parent=MS.gene97380.t1 |
| chr3.1 | exon | 10490995 | 10491103 | 10490995 | ID=MS.gene97380.t1.exon3;Parent=MS.gene97380.t1 |
| chr3.1 | CDS | 10490995 | 10491103 | 10490995 | ID=cds.MS.gene97380.t1;Parent=MS.gene97380.t1 |
| chr3.1 | exon | 10491183 | 10491308 | 10491183 | ID=MS.gene97380.t1.exon4;Parent=MS.gene97380.t1 |
| chr3.1 | CDS | 10491183 | 10491308 | 10491183 | ID=cds.MS.gene97380.t1;Parent=MS.gene97380.t1 |
| chr3.1 | exon | 10491747 | 10491926 | 10491747 | ID=MS.gene97380.t1.exon5;Parent=MS.gene97380.t1 |
| chr3.1 | CDS | 10491747 | 10491926 | 10491747 | ID=cds.MS.gene97380.t1;Parent=MS.gene97380.t1 |
| Gene Sequence |
| Protein sequence |
