Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97389.t1 | GAU12310.1 | 41 | 692 | 156 | 5 | 35 | 474 | 82 | 773 | 1.40E-120 | 443.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97389.t1 | Q9SZL7 | 34.4 | 189 | 118 | 3 | 225 | 410 | 270 | 455 | 7.3e-22 | 106.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97389.t1 | A0A2K3L9Y4 | 36.7 | 678 | 169 | 7 | 48 | 474 | 1 | 669 | 2.6e-97 | 365.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene97389.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97389.t1 | MTR_0853s0010 | 95.570 | 158 | 7 | 0 | 20 | 177 | 1 | 158 | 1.56e-110 | 324 |
| MS.gene97389.t1 | MTR_1g019850 | 53.571 | 168 | 65 | 3 | 18 | 179 | 38 | 198 | 7.36e-52 | 176 |
| MS.gene97389.t1 | MTR_0734s0010 | 50.000 | 160 | 73 | 4 | 320 | 474 | 1 | 158 | 1.73e-39 | 141 |
| MS.gene97389.t1 | MTR_2g024230 | 55.224 | 67 | 30 | 0 | 37 | 103 | 83 | 149 | 1.67e-19 | 85.9 |
| MS.gene97389.t1 | MTR_1g033820 | 53.571 | 56 | 26 | 0 | 32 | 87 | 15 | 70 | 2.54e-15 | 71.6 |
| MS.gene97389.t1 | MTR_6g048540 | 46.250 | 80 | 42 | 1 | 328 | 406 | 106 | 185 | 2.82e-13 | 69.7 |
| MS.gene97389.t1 | MTR_6g048540 | 48.052 | 77 | 37 | 2 | 35 | 108 | 19 | 95 | 9.24e-13 | 68.2 |
| MS.gene97389.t1 | MTR_1g013060 | 26.203 | 187 | 123 | 6 | 40 | 219 | 20 | 198 | 1.83e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97389.t1 | AT4G38170 | 40.458 | 131 | 77 | 1 | 225 | 354 | 270 | 400 | 3.80e-27 | 114 |
| MS.gene97389.t1 | AT4G38180 | 37.879 | 132 | 82 | 0 | 226 | 357 | 507 | 638 | 1.54e-25 | 110 |
| MS.gene97389.t1 | AT4G38180 | 26.961 | 204 | 131 | 7 | 41 | 232 | 70 | 267 | 8.69e-15 | 77.4 |
| MS.gene97389.t1 | AT2G27110 | 40.164 | 122 | 73 | 0 | 231 | 352 | 457 | 578 | 5.81e-25 | 108 |
| MS.gene97389.t1 | AT2G27110 | 40.164 | 122 | 73 | 0 | 231 | 352 | 457 | 578 | 5.81e-25 | 108 |
| MS.gene97389.t1 | AT2G27110 | 40.164 | 122 | 73 | 0 | 231 | 352 | 312 | 433 | 6.52e-25 | 108 |
| MS.gene97389.t1 | AT3G06250 | 34.211 | 152 | 94 | 1 | 231 | 382 | 582 | 727 | 1.13e-22 | 102 |
| MS.gene97389.t1 | AT3G06250 | 34.211 | 152 | 94 | 1 | 231 | 382 | 582 | 727 | 1.13e-22 | 102 |
| MS.gene97389.t1 | AT3G06250 | 34.211 | 152 | 94 | 1 | 231 | 382 | 582 | 727 | 1.13e-22 | 102 |
| MS.gene97389.t1 | AT4G15090 | 39.695 | 131 | 74 | 3 | 231 | 359 | 488 | 615 | 5.25e-21 | 97.1 |
| MS.gene97389.t1 | AT4G15090 | 39.695 | 131 | 74 | 3 | 231 | 359 | 488 | 615 | 5.25e-21 | 97.1 |
| MS.gene97389.t1 | AT4G15090 | 39.695 | 131 | 74 | 3 | 231 | 359 | 488 | 615 | 5.25e-21 | 97.1 |
| MS.gene97389.t1 | AT4G15090 | 39.695 | 131 | 74 | 3 | 231 | 359 | 488 | 615 | 5.25e-21 | 97.1 |
| MS.gene97389.t1 | AT4G15090 | 39.695 | 131 | 74 | 3 | 231 | 359 | 488 | 615 | 5.25e-21 | 97.1 |
| MS.gene97389.t1 | AT5G18960 | 35.433 | 127 | 82 | 0 | 231 | 357 | 606 | 732 | 1.37e-20 | 95.5 |
| MS.gene97389.t1 | AT5G18960 | 35.433 | 127 | 82 | 0 | 231 | 357 | 606 | 732 | 1.37e-20 | 95.5 |
| MS.gene97389.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 245 | 352 | 450 | 558 | 1.54e-17 | 86.3 |
| MS.gene97389.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 245 | 352 | 450 | 558 | 1.54e-17 | 86.3 |
| MS.gene97389.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 245 | 352 | 450 | 558 | 1.72e-17 | 85.9 |
| MS.gene97389.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 245 | 352 | 450 | 558 | 1.72e-17 | 85.9 |
| MS.gene97389.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 245 | 352 | 450 | 558 | 1.91e-17 | 85.9 |
| MS.gene97389.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 245 | 352 | 393 | 501 | 1.95e-17 | 85.9 |
| MS.gene97389.t1 | AT2G32250 | 33.600 | 125 | 82 | 1 | 229 | 353 | 430 | 553 | 2.07e-17 | 85.9 |
| MS.gene97389.t1 | AT2G32250 | 33.600 | 125 | 82 | 1 | 229 | 353 | 430 | 553 | 2.07e-17 | 85.9 |
| MS.gene97389.t1 | AT2G32250 | 33.600 | 125 | 82 | 1 | 229 | 353 | 430 | 553 | 2.07e-17 | 85.9 |
| MS.gene97389.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 245 | 352 | 464 | 572 | 2.19e-17 | 85.5 |
| MS.gene97389.t1 | AT2G32250 | 33.600 | 125 | 82 | 1 | 229 | 353 | 430 | 553 | 2.20e-17 | 85.9 |
| MS.gene97389.t1 | AT2G32250 | 33.600 | 125 | 82 | 1 | 229 | 353 | 430 | 553 | 2.20e-17 | 85.9 |
| MS.gene97389.t1 | AT2G32250 | 33.600 | 125 | 82 | 1 | 229 | 353 | 389 | 512 | 2.30e-17 | 85.5 |
| MS.gene97389.t1 | AT2G32250 | 33.600 | 125 | 82 | 1 | 229 | 353 | 430 | 553 | 2.34e-17 | 85.5 |
| MS.gene97389.t1 | AT2G32250 | 33.600 | 125 | 82 | 1 | 229 | 353 | 389 | 512 | 2.52e-17 | 85.5 |
| MS.gene97389.t1 | AT1G76320 | 34.921 | 126 | 75 | 3 | 229 | 352 | 423 | 543 | 9.31e-15 | 77.4 |
| MS.gene97389.t1 | AT1G76320 | 34.921 | 126 | 75 | 3 | 229 | 352 | 423 | 543 | 9.74e-15 | 77.4 |
| MS.gene97389.t1 | AT1G76320 | 34.921 | 126 | 75 | 3 | 229 | 352 | 423 | 543 | 9.74e-15 | 77.4 |
| MS.gene97389.t1 | AT1G76320 | 34.921 | 126 | 75 | 3 | 229 | 352 | 423 | 543 | 1.49e-14 | 76.6 |
| MS.gene97389.t1 | AT3G22170 | 33.871 | 124 | 81 | 1 | 229 | 352 | 495 | 617 | 1.55e-14 | 76.6 |
| MS.gene97389.t1 | AT3G22170 | 33.871 | 124 | 81 | 1 | 229 | 352 | 495 | 617 | 1.55e-14 | 76.6 |
| MS.gene97389.t1 | AT1G80010 | 35.398 | 113 | 62 | 4 | 248 | 352 | 551 | 660 | 3.93e-13 | 72.4 |
| MS.gene97389.t1 | AT1G10240 | 28.467 | 137 | 87 | 3 | 217 | 350 | 476 | 604 | 2.38e-11 | 66.6 |
| MS.gene97389.t1 | AT1G10240 | 28.467 | 137 | 87 | 3 | 217 | 350 | 476 | 604 | 2.38e-11 | 66.6 |
| MS.gene97389.t1 | AT1G52520 | 33.898 | 118 | 71 | 3 | 241 | 351 | 519 | 636 | 4.76e-11 | 65.5 |
Find 54 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCAACTTTATGAATTTA+TGG | 0.151879 | 3.1:+10197395 | MS.gene97389:CDS |
| AAACATCTTTAAGAAGTTTC+AGG | 0.189455 | 3.1:+10197227 | MS.gene97389:CDS |
| TCTTCTTCGGCATTTGATTT+TGG | 0.192710 | 3.1:-10195597 | None:intergenic |
| TATTGATCCTTGTATTGATA+TGG | 0.239238 | 3.1:+10195836 | MS.gene97389:CDS |
| CCTTTAGTTTGTCCCATTAT+CGG | 0.241989 | 3.1:-10197795 | None:intergenic |
| TCTTTCGGAGTCCATCATTC+TGG | 0.292595 | 3.1:-10197688 | None:intergenic |
| CGCTTTAAAATATATTCATT+TGG | 0.310558 | 3.1:-10197474 | None:intergenic |
| GCAATACAATCACAGTAAAA+AGG | 0.311417 | 3.1:+10196012 | MS.gene97389:CDS |
| AACTCAGCTTCTTCAGTTGT+TGG | 0.313522 | 3.1:-10197759 | None:intergenic |
| CCAAGAGTATAAACTATCTT+AGG | 0.313740 | 3.1:+10196159 | MS.gene97389:CDS |
| AAATGTAATGATAGTCCATT+TGG | 0.314496 | 3.1:-10196105 | None:intergenic |
| CCTAAGATAGTTTATACTCT+TGG | 0.340102 | 3.1:-10196159 | None:intergenic |
| TGTCAACTTTATGAATTTAT+GGG | 0.343627 | 3.1:+10197396 | MS.gene97389:CDS |
| CTAAGATAGTTTATACTCTT+GGG | 0.346829 | 3.1:-10196158 | None:intergenic |
| GCTTGAAAAGATCATCAAAA+AGG | 0.372423 | 3.1:+10197665 | MS.gene97389:CDS |
| CAATATTCGAGATCCGATAA+TGG | 0.381394 | 3.1:+10197782 | MS.gene97389:CDS |
| TGAAACTCTAGTTTGTCTTT+CGG | 0.388167 | 3.1:-10197703 | None:intergenic |
| ATTATGCAGACATATCTTGA+TGG | 0.397243 | 3.1:+10197422 | MS.gene97389:CDS |
| CATGTTATGACTATCTTCTT+CGG | 0.402279 | 3.1:-10195610 | None:intergenic |
| TGGACAAAGGATGCTAATAT+TGG | 0.412634 | 3.1:+10197498 | MS.gene97389:CDS |
| ATAAAGTTGACAACCACATT+TGG | 0.431711 | 3.1:-10197385 | None:intergenic |
| AATGTTTAGCAATGAAGGTT+CGG | 0.437737 | 3.1:+10196265 | MS.gene97389:CDS |
| AATATTCGAGATCCGATAAT+GGG | 0.442271 | 3.1:+10197783 | MS.gene97389:CDS |
| GCTACAATGTTTAGCAATGA+AGG | 0.444472 | 3.1:+10196260 | MS.gene97389:CDS |
| AACATCAAGAACTGATTGTA+AGG | 0.444776 | 3.1:+10196049 | MS.gene97389:CDS |
| CTTTCTCTGATAGAGATTGT+TGG | 0.446604 | 3.1:+10196288 | MS.gene97389:CDS |
| ATATTTGTTTGCTCTAATGC+TGG | 0.447741 | 3.1:+10195957 | MS.gene97389:CDS |
| ATTTGGCAGCCCTTGTATCA+AGG | 0.469613 | 3.1:-10197368 | None:intergenic |
| TGAACATCTAAGTCATGCTC+AGG | 0.476339 | 3.1:-10195801 | None:intergenic |
| TGGAAGAATCAAAAGCGGTC+TGG | 0.495399 | 3.1:+10197851 | MS.gene97389:CDS |
| GATCAAGAGGGCTTGCCTAC+CGG | 0.495549 | 3.1:+10196230 | MS.gene97389:CDS |
| AATGTAATGATAGTCCATTT+GGG | 0.500833 | 3.1:-10196104 | None:intergenic |
| ACAAACTAAAGGAAGACAAA+AGG | 0.510225 | 3.1:+10197806 | MS.gene97389:CDS |
| GGTCAGATAATAAACTTGCT+TGG | 0.514870 | 3.1:-10197602 | None:intergenic |
| CCGATAATGGGACAAACTAA+AGG | 0.517238 | 3.1:+10197795 | MS.gene97389:CDS |
| GCTAATATTGGCATTATATG+TGG | 0.529640 | 3.1:+10197510 | MS.gene97389:CDS |
| TGTCATTACTATCAACATGT+TGG | 0.533945 | 3.1:-10195980 | None:intergenic |
| TTTATGTGGACCTTGATACA+AGG | 0.535609 | 3.1:+10197358 | MS.gene97389:CDS |
| AGAGTCATATACTGTTTATG+TGG | 0.549358 | 3.1:+10197344 | MS.gene97389:CDS |
| AAAGGTTAGCCACTTCATCA+AGG | 0.553222 | 3.1:+10197260 | MS.gene97389:CDS |
| TCATAACATGGAGGACATAG+AGG | 0.553789 | 3.1:+10195623 | MS.gene97389:CDS |
| AGTTGAACAGTTTGATCAAG+AGG | 0.557965 | 3.1:+10196217 | MS.gene97389:CDS |
| TAAGATAGTTTATACTCTTG+GGG | 0.560800 | 3.1:-10196157 | None:intergenic |
| GTTGAACAGTTTGATCAAGA+GGG | 0.578599 | 3.1:+10196218 | MS.gene97389:CDS |
| GTTTCAGGACGAGCTTGCAA+AGG | 0.593760 | 3.1:+10197242 | MS.gene97389:CDS |
| AATGCTCAAGTTTCTCAACC+TGG | 0.594637 | 3.1:+10197831 | MS.gene97389:CDS |
| CGAAGAAGATAGTCATAACA+TGG | 0.604552 | 3.1:+10195611 | MS.gene97389:CDS |
| CAATACTCATAATCATGCAA+TGG | 0.611156 | 3.1:+10196130 | MS.gene97389:CDS |
| TCAAATTCCATATCAATACA+AGG | 0.614636 | 3.1:-10195843 | None:intergenic |
| GATACAAGGGCTGCCAAATG+TGG | 0.650490 | 3.1:+10197372 | MS.gene97389:CDS |
| TTATGTGGACCTTGATACAA+GGG | 0.662546 | 3.1:+10197359 | MS.gene97389:CDS |
| GAACATCTAAGTCATGCTCA+GGG | 0.664893 | 3.1:-10195800 | None:intergenic |
| CAACCTGGAAGAATCAAAAG+CGG | 0.677260 | 3.1:+10197846 | MS.gene97389:CDS |
| AGAAGATAGTCATAACATGG+AGG | 0.736903 | 3.1:+10195614 | MS.gene97389:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATGGTTAAATATGATT+TGG | + | chr3.1:10196905-10196924 | MS.gene97389:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | - | chr3.1:10196905-10196924 | None:intergenic | 15.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | - | chr3.1:10196490-10196509 | None:intergenic | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | - | chr3.1:10196981-10197000 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | + | chr3.1:10196695-10196714 | MS.gene97389:intron | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | + | chr3.1:10197396-10197415 | MS.gene97389:CDS | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | + | chr3.1:10197395-10197414 | MS.gene97389:CDS | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | + | chr3.1:10197478-10197497 | MS.gene97389:CDS | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | + | chr3.1:10196919-10196938 | MS.gene97389:intron | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | - | chr3.1:10197477-10197496 | None:intergenic | 20.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | - | chr3.1:10196108-10196127 | None:intergenic | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | - | chr3.1:10196107-10196126 | None:intergenic | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | + | chr3.1:10197188-10197207 | MS.gene97389:CDS | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | - | chr3.1:10196161-10196180 | None:intergenic | 25.0% |
| ! | GCATTGCATAAAAGAAATTT+GGG | - | chr3.1:10196403-10196422 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | - | chr3.1:10196160-10196179 | None:intergenic | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | + | chr3.1:10196081-10196100 | MS.gene97389:CDS | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | - | chr3.1:10195846-10195865 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | - | chr3.1:10196690-10196709 | None:intergenic | 25.0% |
| ! | TGCATTGCATAAAAGAAATT+TGG | - | chr3.1:10196404-10196423 | None:intergenic | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | + | chr3.1:10197227-10197246 | MS.gene97389:CDS | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | + | chr3.1:10196869-10196888 | MS.gene97389:intron | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | - | chr3.1:10196821-10196840 | None:intergenic | 25.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | + | chr3.1:10195836-10195855 | MS.gene97389:CDS | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | + | chr3.1:10195900-10195919 | MS.gene97389:CDS | 25.0% |
| AACATCAAGAACTGATTGTA+AGG | + | chr3.1:10196049-10196068 | MS.gene97389:CDS | 30.0% | |
| AAGGACAAAATCGAGAAAAA+TGG | + | chr3.1:10197279-10197298 | MS.gene97389:CDS | 30.0% | |
| AATATTCGAGATCCGATAAT+GGG | + | chr3.1:10197783-10197802 | MS.gene97389:CDS | 30.0% | |
| AATGTTTAGCAATGAAGGTT+CGG | + | chr3.1:10196265-10196284 | MS.gene97389:CDS | 30.0% | |
| ACAAACTAAAGGAAGACAAA+AGG | + | chr3.1:10197806-10197825 | MS.gene97389:CDS | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | + | chr3.1:10197344-10197363 | MS.gene97389:CDS | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | + | chr3.1:10197280-10197299 | MS.gene97389:CDS | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | - | chr3.1:10197388-10197407 | None:intergenic | 30.0% | |
| ATATTTGTTTGCTCTAATGC+TGG | + | chr3.1:10195957-10195976 | MS.gene97389:CDS | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | + | chr3.1:10197422-10197441 | MS.gene97389:CDS | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | + | chr3.1:10196130-10196149 | MS.gene97389:CDS | 30.0% | |
| CATGTTATGACTATCTTCTT+CGG | - | chr3.1:10195613-10195632 | None:intergenic | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | - | chr3.1:10196162-10196181 | None:intergenic | 30.0% | |
| CTCTAATTTCATACAAACCT+TGG | - | chr3.1:10196947-10196966 | None:intergenic | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | + | chr3.1:10196012-10196031 | MS.gene97389:CDS | 30.0% | |
| GCTAATATTGGCATTATATG+TGG | + | chr3.1:10197510-10197529 | MS.gene97389:CDS | 30.0% | |
| GCTTGAAAAGATCATCAAAA+AGG | + | chr3.1:10197665-10197684 | MS.gene97389:CDS | 30.0% | |
| TGATGATTCAATCCAGTAAA+TGG | - | chr3.1:10196564-10196583 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | + | chr3.1:10196952-10196971 | MS.gene97389:intron | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | - | chr3.1:10195983-10196002 | None:intergenic | 30.0% | |
| ! | AAACAGAGAAGTCTTTTACA+TGG | + | chr3.1:10196625-10196644 | MS.gene97389:intron | 30.0% |
| ! | ACGTCATTTGCTAAAAAAGA+AGG | + | chr3.1:10195894-10195913 | MS.gene97389:CDS | 30.0% |
| ! | ATATGTTCTCAGATTTTGCA+AGG | - | chr3.1:10197626-10197645 | None:intergenic | 30.0% |
| ! | CCAAGAGTATAAACTATCTT+AGG | + | chr3.1:10196159-10196178 | MS.gene97389:CDS | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | + | chr3.1:10196176-10196195 | MS.gene97389:CDS | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | + | chr3.1:10196175-10196194 | MS.gene97389:CDS | 30.0% |
| ! | TGAAACTCTAGTTTGTCTTT+CGG | - | chr3.1:10197706-10197725 | None:intergenic | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | + | chr3.1:10196640-10196659 | MS.gene97389:intron | 30.0% |
| !! | CAACATCCAGATTTTTAGAT+CGG | - | chr3.1:10196331-10196350 | None:intergenic | 30.0% |
| !! | TTGAAGATTTTGAGGAAGAT+TGG | + | chr3.1:10196877-10196896 | MS.gene97389:intron | 30.0% |
| !!! | AATATGAAGACCTTTTTTGC+TGG | + | chr3.1:10196987-10197006 | MS.gene97389:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | + | chr3.1:10196480-10196499 | MS.gene97389:intron | 30.0% |
| !!! | ATATGAAGACCTTTTTTGCT+GGG | + | chr3.1:10196988-10197007 | MS.gene97389:intron | 30.0% |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | + | chr3.1:10197485-10197504 | MS.gene97389:CDS | 30.0% |
| !!! | TTTTTTTTTGGGTTGATGCA+AGG | + | chr3.1:10196454-10196473 | MS.gene97389:intron | 30.0% |
| AGAAGATAGTCATAACATGG+AGG | + | chr3.1:10195614-10195633 | MS.gene97389:CDS | 35.0% | |
| AGATCTCCGATCTAAAAATC+TGG | + | chr3.1:10196322-10196341 | MS.gene97389:CDS | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | + | chr3.1:10197094-10197113 | MS.gene97389:intron | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | + | chr3.1:10196217-10196236 | MS.gene97389:CDS | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | - | chr3.1:10196595-10196614 | None:intergenic | 35.0% | |
| CAATATTCGAGATCCGATAA+TGG | + | chr3.1:10197782-10197801 | MS.gene97389:CDS | 35.0% | |
| CATAAACGATGTCGAGTATT+AGG | - | chr3.1:10196750-10196769 | None:intergenic | 35.0% | |
| CGAAGAAGATAGTCATAACA+TGG | + | chr3.1:10195611-10195630 | MS.gene97389:CDS | 35.0% | |
| CGATCTAAAAATCTGGATGT+TGG | + | chr3.1:10196329-10196348 | MS.gene97389:CDS | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | + | chr3.1:10196288-10196307 | MS.gene97389:CDS | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | + | chr3.1:10196927-10196946 | MS.gene97389:intron | 35.0% | |
| GCTACAATGTTTAGCAATGA+AGG | + | chr3.1:10196260-10196279 | MS.gene97389:CDS | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | + | chr3.1:10196218-10196237 | MS.gene97389:CDS | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | + | chr3.1:10197498-10197517 | MS.gene97389:CDS | 35.0% | |
| TGTATTCATCCCAGCAAAAA+AGG | - | chr3.1:10197000-10197019 | None:intergenic | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | + | chr3.1:10197359-10197378 | MS.gene97389:CDS | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | + | chr3.1:10197358-10197377 | MS.gene97389:CDS | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | - | chr3.1:10196252-10196271 | None:intergenic | 35.0% |
| ! | CATCAGCAGTCCATTTTATT+CGG | + | chr3.1:10196582-10196601 | MS.gene97389:intron | 35.0% |
| ! | GGTCAGATAATAAACTTGCT+TGG | - | chr3.1:10197605-10197624 | None:intergenic | 35.0% |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | + | chr3.1:10196647-10196666 | MS.gene97389:intron | 35.0% |
| !! | CCTTTAGTTTGTCCCATTAT+CGG | - | chr3.1:10197798-10197817 | None:intergenic | 35.0% |
| !! | TCTTCTTCGGCATTTGATTT+TGG | - | chr3.1:10195600-10195619 | None:intergenic | 35.0% |
| !! | TTGATGATCTTTTCAAGCTC+TGG | - | chr3.1:10197663-10197682 | None:intergenic | 35.0% |
| AACTCAGCTTCTTCAGTTGT+TGG | - | chr3.1:10197762-10197781 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | + | chr3.1:10196090-10196109 | MS.gene97389:CDS | 40.0% | |
| AATCCAGTAAATGGCGCAAA+TGG | - | chr3.1:10196555-10196574 | None:intergenic | 40.0% | |
| AATGCTCAAGTTTCTCAACC+TGG | + | chr3.1:10197831-10197850 | MS.gene97389:CDS | 40.0% | |
| CAACCTGGAAGAATCAAAAG+CGG | + | chr3.1:10197846-10197865 | MS.gene97389:CDS | 40.0% | |
| CATCAAAAAGGCCAGAATGA+TGG | + | chr3.1:10197677-10197696 | MS.gene97389:CDS | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | + | chr3.1:10196754-10196773 | MS.gene97389:intron | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | + | chr3.1:10196654-10196673 | MS.gene97389:intron | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | - | chr3.1:10195803-10195822 | None:intergenic | 40.0% | |
| GGAAGATTGGCACCAAATAA+TGG | + | chr3.1:10196890-10196909 | MS.gene97389:intron | 40.0% | |
| GTGCCATAAAAAAATGGGTG+GGG | + | chr3.1:10196181-10196200 | MS.gene97389:CDS | 40.0% | |
| TCATAACATGGAGGACATAG+AGG | + | chr3.1:10195623-10195642 | MS.gene97389:CDS | 40.0% | |
| TGAAACTTGGCTAATGGCAA+TGG | + | chr3.1:10196653-10196672 | MS.gene97389:intron | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | - | chr3.1:10195804-10195823 | None:intergenic | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | + | chr3.1:10197260-10197279 | MS.gene97389:CDS | 40.0% |
| ! | AGGTGCCATAAAAAAATGGG+TGG | + | chr3.1:10196179-10196198 | MS.gene97389:CDS | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | - | chr3.1:10197272-10197291 | None:intergenic | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | + | chr3.1:10196180-10196199 | MS.gene97389:CDS | 40.0% |
| !! | CCGATAATGGGACAAACTAA+AGG | + | chr3.1:10197795-10197814 | MS.gene97389:CDS | 40.0% |
| ATTTGGCAGCCCTTGTATCA+AGG | - | chr3.1:10197371-10197390 | None:intergenic | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | + | chr3.1:10197006-10197025 | MS.gene97389:intron | 45.0% | |
| GATCAAGATAAGGCGATGTG+CGG | + | chr3.1:10196705-10196724 | MS.gene97389:intron | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | + | chr3.1:10196719-10196738 | MS.gene97389:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | - | chr3.1:10197078-10197097 | None:intergenic | 45.0% | |
| TCTTTCGGAGTCCATCATTC+TGG | - | chr3.1:10197691-10197710 | None:intergenic | 45.0% | |
| TGGAAGAATCAAAAGCGGTC+TGG | + | chr3.1:10197851-10197870 | MS.gene97389:CDS | 45.0% | |
| ! | ATGCCATTTGCGCCATTTAC+TGG | + | chr3.1:10196549-10196568 | MS.gene97389:intron | 45.0% |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | - | chr3.1:10196248-10196267 | None:intergenic | 45.0% |
| !! | AGACCGCTTTTGATTCTTCC+AGG | - | chr3.1:10197852-10197871 | None:intergenic | 45.0% |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | - | chr3.1:10196187-10196206 | None:intergenic | 45.0% |
| !!! | AATGATTAATTTTTTTTTTT+TGG | + | chr3.1:10196442-10196461 | MS.gene97389:intron | 5.0% |
| !!! | ATGATTAATTTTTTTTTTTT+GGG | + | chr3.1:10196443-10196462 | MS.gene97389:intron | 5.0% |
| ACTTGGCTAATGGCAATGGG+TGG | + | chr3.1:10196657-10196676 | MS.gene97389:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | + | chr3.1:10197372-10197391 | MS.gene97389:CDS | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | + | chr3.1:10197242-10197261 | MS.gene97389:CDS | 50.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | + | chr3.1:10196460-10196479 | MS.gene97389:intron | 50.0% |
| GATCAAGAGGGCTTGCCTAC+CGG | + | chr3.1:10196230-10196249 | MS.gene97389:CDS | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | + | chr3.1:10196464-10196483 | MS.gene97389:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 10195588 | 10197881 | 10195588 | ID=MS.gene97389 |
| chr3.1 | mRNA | 10195588 | 10197881 | 10195588 | ID=MS.gene97389.t1;Parent=MS.gene97389 |
| chr3.1 | exon | 10195588 | 10195644 | 10195588 | ID=MS.gene97389.t1.exon1;Parent=MS.gene97389.t1 |
| chr3.1 | CDS | 10195588 | 10195644 | 10195588 | ID=cds.MS.gene97389.t1;Parent=MS.gene97389.t1 |
| chr3.1 | exon | 10195771 | 10196377 | 10195771 | ID=MS.gene97389.t1.exon2;Parent=MS.gene97389.t1 |
| chr3.1 | CDS | 10195771 | 10196377 | 10195771 | ID=cds.MS.gene97389.t1;Parent=MS.gene97389.t1 |
| chr3.1 | exon | 10197121 | 10197881 | 10197121 | ID=MS.gene97389.t1.exon3;Parent=MS.gene97389.t1 |
| chr3.1 | CDS | 10197121 | 10197881 | 10197121 | ID=cds.MS.gene97389.t1;Parent=MS.gene97389.t1 |
| Gene Sequence |
| Protein sequence |
