AlfalfaGEDB | MS.gene97389

M. sativa cultivar XinJiangDaYe / MS.gene97389

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF04434.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97389.t1	GAU12310.1	41	692	156	5	35	474	82	773	1.40E-120	443.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97389.t1	Q9SZL7	34.4	189	118	3	225	410	270	455	7.3e-22	106.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97389.t1	A0A2K3L9Y4	36.7	678	169	7	48	474	1	669	2.6e-97	365.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene97389.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97389.t1	MTR_0853s0010	95.570	158	7	0	20	177	1	158	1.56e-110	324
MS.gene97389.t1	MTR_1g019850	53.571	168	65	3	18	179	38	198	7.36e-52	176
MS.gene97389.t1	MTR_0734s0010	50.000	160	73	4	320	474	1	158	1.73e-39	141
MS.gene97389.t1	MTR_2g024230	55.224	67	30	0	37	103	83	149	1.67e-19	85.9
MS.gene97389.t1	MTR_1g033820	53.571	56	26	0	32	87	15	70	2.54e-15	71.6
MS.gene97389.t1	MTR_6g048540	46.250	80	42	1	328	406	106	185	2.82e-13	69.7
MS.gene97389.t1	MTR_6g048540	48.052	77	37	2	35	108	19	95	9.24e-13	68.2
MS.gene97389.t1	MTR_1g013060	26.203	187	123	6	40	219	20	198	1.83e-11	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97389.t1	AT4G38170	40.458	131	77	1	225	354	270	400	3.80e-27	114
MS.gene97389.t1	AT4G38180	37.879	132	82	0	226	357	507	638	1.54e-25	110
MS.gene97389.t1	AT4G38180	26.961	204	131	7	41	232	70	267	8.69e-15	77.4
MS.gene97389.t1	AT2G27110	40.164	122	73	0	231	352	457	578	5.81e-25	108
MS.gene97389.t1	AT2G27110	40.164	122	73	0	231	352	457	578	5.81e-25	108
MS.gene97389.t1	AT2G27110	40.164	122	73	0	231	352	312	433	6.52e-25	108
MS.gene97389.t1	AT3G06250	34.211	152	94	1	231	382	582	727	1.13e-22	102
MS.gene97389.t1	AT3G06250	34.211	152	94	1	231	382	582	727	1.13e-22	102
MS.gene97389.t1	AT3G06250	34.211	152	94	1	231	382	582	727	1.13e-22	102
MS.gene97389.t1	AT4G15090	39.695	131	74	3	231	359	488	615	5.25e-21	97.1

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Find 54 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCTTTAAGAAGTTTC+AGG	0.189455	3.1:+10197227	MS.gene97389:CDS
AAAGGTTAGCCACTTCATCA+AGG	0.553222	3.1:+10197260	MS.gene97389:CDS
AAATGTAATGATAGTCCATT+TGG	0.314496	3.1:-10196105	None:intergenic
AACATCAAGAACTGATTGTA+AGG	0.444776	3.1:+10196049	MS.gene97389:CDS
AACTCAGCTTCTTCAGTTGT+TGG	0.313522	3.1:-10197759	None:intergenic
AATATTCGAGATCCGATAAT+GGG	0.442271	3.1:+10197783	MS.gene97389:CDS
AATGCTCAAGTTTCTCAACC+TGG	0.594637	3.1:+10197831	MS.gene97389:CDS
AATGTAATGATAGTCCATTT+GGG	0.500833	3.1:-10196104	None:intergenic
AATGTTTAGCAATGAAGGTT+CGG	0.437737	3.1:+10196265	MS.gene97389:CDS
ACAAACTAAAGGAAGACAAA+AGG	0.510225	3.1:+10197806	MS.gene97389:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATCAAGAACTGATTGTA+AGG	+	chr3.1:10196049-10196068	MS.gene97389:CDS	30.0%
AAGGACAAAATCGAGAAAAA+TGG	+	chr3.1:10197279-10197298	MS.gene97389:CDS	30.0%
AATATTCGAGATCCGATAAT+GGG	+	chr3.1:10197783-10197802	MS.gene97389:CDS	30.0%
AATGTTTAGCAATGAAGGTT+CGG	+	chr3.1:10196265-10196284	MS.gene97389:CDS	30.0%
ACAAACTAAAGGAAGACAAA+AGG	+	chr3.1:10197806-10197825	MS.gene97389:CDS	30.0%
AGAGTCATATACTGTTTATG+TGG	+	chr3.1:10197344-10197363	MS.gene97389:CDS	30.0%
AGGACAAAATCGAGAAAAAT+GGG	+	chr3.1:10197280-10197299	MS.gene97389:CDS	30.0%
ATAAAGTTGACAACCACATT+TGG	-	chr3.1:10197388-10197407	None:intergenic	30.0%
ATATTTGTTTGCTCTAATGC+TGG	+	chr3.1:10195957-10195976	MS.gene97389:CDS	30.0%
ATTATGCAGACATATCTTGA+TGG	+	chr3.1:10197422-10197441	MS.gene97389:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	10195588	10197881	10195588	ID=MS.gene97389
chr3.1	mRNA	10195588	10197881	10195588	ID=MS.gene97389.t1;Parent=MS.gene97389
chr3.1	exon	10195588	10195644	10195588	ID=MS.gene97389.t1.exon1;Parent=MS.gene97389.t1
chr3.1	CDS	10195588	10195644	10195588	ID=cds.MS.gene97389.t1;Parent=MS.gene97389.t1
chr3.1	exon	10195771	10196377	10195771	ID=MS.gene97389.t1.exon2;Parent=MS.gene97389.t1
chr3.1	CDS	10195771	10196377	10195771	ID=cds.MS.gene97389.t1;Parent=MS.gene97389.t1
chr3.1	exon	10197121	10197881	10197121	ID=MS.gene97389.t1.exon3;Parent=MS.gene97389.t1
chr3.1	CDS	10197121	10197881	10197121	ID=cds.MS.gene97389.t1;Parent=MS.gene97389.t1

Gene Sequence

>MS.gene97389

ATGGAAAGTCCAAAATCAAATGCCGAAGAAGATAGTCATAACATGGAGGACATAGAGGTATGATGAATTAATTCTTCAATTACATTTGCTTTATGTCTTTTATATATCTCTTAACAAAATCATATGTATTTCATAGAATTTTAATTTTTAAAACTTTACGATGTTTTTTATTTTAATATATAGTGCAATCAAAATTCTCAAGAAAGAAGAAACCCTGAGCATGACTTAGATGTTCATGAGCATCAAAATATTGATCCTTGTATTGATATGGAATTTGACTCTCTTGATGATGTTAAAAATTTATACACGTCATTTGCTAAAAAAGAAGGTTTTGGAATTCGTACACGTTCAACTAAGACAAATTTGTGCATATTTGTTTGCTCTAATGCTGGCCAACATGTTGATAGTAATGACAAAGAAGAAAGCAATACAATCACAGTAAAAAGGAAAAAAAGATGTTCAACATCAAGAACTGATTGTAAGGCAACACTTGTAGTTTCAAAAGCAAAAATGAGGCCCAAATGGACTATCATTACATTTAACAATACTCATAATCATGCAATGGTTAGCCCCAAGAGTATAAACTATCTTAGGTGCCATAAAAAAATGGGTGGGGCAGCAAAGAATCTAGTTGAACAGTTTGATCAAGAGGGCTTGCCTACCGGAAAAGTCGCTACAATGTTTAGCAATGAAGGTTCGGCTTTCTCTGATAGAGATTGTTGGAATCATCTTAGAGATCTCCGATCTAAAAATCTGGATGTTGGAGATGCTCAAGCAGTGTTAAACTTTTGTAAGCAAAAACAAGCAGAGAACCCAAATTTCTTTTATGCAATGCAAGTTGATAATCATGATAGAATGATTAATTTTTTTTTTTTGGGTTGATGCAAGGTCGAGGTTGGCCTATAATTATTTTGGAGATGTTGTTACATTTGATACAACATATAAGAAGAACAAGTATCTTATGCCATTTGCGCCATTTACTGGATTGAATCATCATCAGCAGTCCATTTTATTCGGTTGTGCTTTGTTGCAAGATGAAACAGAGAAGTCTTTTACATGGTTGTTTGAAACTTGGCTAATGGCAATGGGTGGAAAGAGTCCTGTTTCAATAATTACAGATCAAGATAAGGCGATGTGCGGAGCAATATCTAAGGTATTTCCTAATACTCGACATCGTTTATGTTTGTGGCACATTAGAAAAAAGTTTGCTGAGAAGCTTTCACACATATACCATAAAAGTTCAAATTTCAAGCGTGAGCTGAAAAAGTGTATACGTGAATCATTATGCATTGAAGATTTTGAGGAAGATTGGCACCAAATAATGGTTAAATATGATTTGGAAAAAAATGAATGGCTCCAAGGTTTGTATGAAATTAGAGAGTCATGGATTCCTATTTATAATATGAAGACCTTTTTTGCTGGGATGAATACAACACAGAGGAGTGAGAGCATAAATGCATTTTTTGATTCTTTTGTTGATTCTTCAACCACACTGCGAGATTTCGTAGTAAAGTTTGACAAAGCAGTGGATAGTCGCTACGAGAAAGAAAGAAAAAGAAGATTTTGAGTCGCGACATCGATCACGTCTCTTAAGTGTTAGATCAAAAATTGAAAAGCAAGCGGCAACTATTTATACTAGAAACATCTTTAAGAAGTTTCAGGACGAGCTTGCAAAGGTTAGCCACTTCATCAAGGACAAAATCGAGAAAAATGGGTCTCAATATACATATAAAGTAACTAATTGTGATAATACTCGAGAGTCATATACTGTTTATGTGGACCTTGATACAAGGGCTGCCAAATGTGGTTGTCAACTTTATGAATTTATGGGCATATTATGCAGACATATCTTGATGGTTTTTCAATCAAAAAATATTATTGAAATTCCAAATGAATATATTTTAAAGCGTTGGACAAAGGATGCTAATATTGGCATTATATGTGGTATTAATGAAAACAATTCAGTACGTGAGAGTACTAAATCAGCAACTCTTCGAAGTATGCATGTGCTTAGCCAAGCAAGTTTATTATCTGACCTTGCAAAATCTGAGAACATATATGAGTTTATATCTCCAGAGCTTGAAAAGATCATCAAAAAGGCCAGAATGATGGACTCCGAAAGACAAACTAGAGTTTCAGAAACAACGTTTGAAGATGAGAGCATGTGTGATCCAACAACTGAAGAAGCTGAGTTCAATATTCGAGATCCGATAATGGGACAAACTAAAGGAAGACAAAAGGACAATGCTCAAGTTTCTCAACCTGGAAGAATCAAAAGCGGTCTGGAGTTATAA

Protein sequence

>MS.gene97389.t1

MESPKSNAEEDSHNMEDIECNQNSQERRNPEHDLDVHEHQNIDPCIDMEFDSLDDVKNLYTSFAKKEGFGIRTRSTKTNLCIFVCSNAGQHVDSNDKEESNTITVKRKKRCSTSRTDCKATLVVSKAKMRPKWTIITFNNTHNHAMVSPKSINYLRCHKKMGGAAKNLVEQFDQEGLPTGKVATMFSNEGSAFSDRDCWNHLRDLRSKNLDVGDAQAVLNFFATRKKEKEDFESRHRSRLLSVRSKIEKQAATIYTRNIFKKFQDELAKVSHFIKDKIEKNGSQYTYKVTNCDNTRESYTVYVDLDTRAAKCGCQLYEFMGILCRHILMVFQSKNIIEIPNEYILKRWTKDANIGIICGINENNSVRESTKSATLRSMHVLSQASLLSDLAKSENIYEFISPELEKIIKKARMMDSERQTRVSETTFEDESMCDPTTEEAEFNIRDPIMGQTKGRQKDNAQVSQPGRIKSGLEL