AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene97427

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97427.t1 MTR_7g045505 97.854 233 5 0 1 233 17 249 1.39e-161 470
MS.gene97427.t1 MTR_7g045505 97.854 233 5 0 1 233 17 249 1.86e-159 469
MS.gene97427.t1 MTR_7g039320 89.756 205 14 1 1 205 66 263 9.12e-127 382
MS.gene97427.t1 MTR_7g039320 89.756 205 14 1 1 205 66 263 1.05e-126 382
MS.gene97427.t1 MTR_5g020000 40.928 237 119 9 1 230 211 433 7.93e-43 156
MS.gene97427.t1 MTR_2g020000 37.398 246 126 8 1 242 218 439 3.17e-40 149
MS.gene97427.t1 MTR_5g005840 37.900 219 114 5 1 212 390 593 4.77e-40 149
MS.gene97427.t1 MTR_3g053910 36.957 230 129 5 1 230 598 811 5.15e-40 149
MS.gene97427.t1 MTR_3g053910 36.957 230 129 5 1 230 627 840 5.62e-40 149
MS.gene97427.t1 MTR_3g106210 34.843 287 157 6 1 273 315 585 6.46e-40 148
MS.gene97427.t1 MTR_3g106210 34.843 287 157 6 1 273 315 585 6.58e-40 148
MS.gene97427.t1 MTR_7g090960 35.776 232 140 3 1 232 524 746 7.06e-40 148
MS.gene97427.t1 MTR_7g090960 35.776 232 140 3 1 232 605 827 7.84e-40 148
MS.gene97427.t1 MTR_5g090090 37.069 232 130 6 1 232 644 859 8.68e-40 148
MS.gene97427.t1 MTR_3g106210 34.843 287 157 6 1 273 315 585 8.71e-40 148
MS.gene97427.t1 MTR_3g106210 34.843 287 157 6 1 273 315 585 9.14e-40 148
MS.gene97427.t1 MTR_5g090090 37.069 232 130 6 1 232 644 859 9.90e-40 148
MS.gene97427.t1 MTR_1g013190 37.313 268 133 7 1 252 313 561 6.38e-39 145
MS.gene97427.t1 MTR_4g118720 41.441 222 108 7 1 212 1032 1241 2.03e-38 144
MS.gene97427.t1 MTR_4g118845 36.066 244 132 7 1 242 215 436 4.24e-38 143
MS.gene97427.t1 MTR_4g118845 36.066 244 132 7 1 242 28 249 4.57e-38 143
MS.gene97427.t1 MTR_1g105050 37.443 219 115 5 1 212 403 606 5.68e-38 142
MS.gene97427.t1 MTR_4g096930 33.929 280 160 8 1 272 761 1023 1.30e-34 133
MS.gene97427.t1 MTR_8g030550 38.605 215 112 4 1 207 1014 1216 2.93e-33 129
MS.gene97427.t1 MTR_8g030550 38.605 215 112 4 1 207 1014 1216 3.75e-33 129
MS.gene97427.t1 MTR_7g078090 35.659 258 136 8 1 250 1021 1256 4.97e-32 125
MS.gene97427.t1 MTR_8g030550 38.605 215 112 4 1 207 1014 1216 1.97e-31 124
MS.gene97427.t1 MTR_1g035330 32.883 222 125 5 1 214 223 428 9.22e-30 119
MS.gene97427.t1 MTR_1g053955 36.150 213 117 6 1 209 548 745 1.51e-29 118
MS.gene97427.t1 MTR_4g035100 34.071 226 122 6 1 213 1477 1688 4.86e-29 117
MS.gene97427.t1 MTR_4g035100 34.071 226 122 6 1 213 1477 1688 5.05e-29 117
MS.gene97427.t1 MTR_4g078495 31.718 227 124 7 1 211 158 369 5.85e-20 90.5
MS.gene97427.t1 MTR_4g078460 31.441 229 126 7 1 213 444 657 8.59e-20 90.1
MS.gene97427.t1 MTR_4g078460 31.718 227 124 7 1 211 444 655 8.72e-20 89.7
MS.gene97427.t1 MTR_1g069755 26.515 264 156 7 1 233 418 674 4.39e-19 87.8
MS.gene97427.t1 MTR_5g004720 30.802 237 132 9 1 222 217 436 2.84e-18 85.5
MS.gene97427.t1 MTR_8g094070 29.614 233 126 7 1 212 412 627 1.22e-15 77.8
MS.gene97427.t1 MTR_8g094070 29.614 233 126 7 1 212 412 627 1.23e-15 77.4
MS.gene97427.t1 MTR_8g094100 37.647 85 52 1 86 170 18 101 7.24e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97427.t1 AT2G44980 69.492 236 71 1 1 236 79 313 1.47e-107 332
MS.gene97427.t1 AT2G44980 69.492 236 71 1 1 236 78 312 1.54e-107 332
MS.gene97427.t1 AT2G44980 68.670 233 63 2 1 233 79 301 8.33e-104 322
MS.gene97427.t1 AT5G66750 40.336 238 124 7 1 233 229 453 9.38e-45 162
MS.gene97427.t1 AT3G57300 37.500 232 136 3 1 232 613 835 6.80e-42 154
MS.gene97427.t1 AT3G57300 37.500 232 136 3 1 232 613 835 1.07e-41 154
MS.gene97427.t1 AT3G57300 37.500 232 136 3 1 232 613 835 1.07e-41 154
MS.gene97427.t1 AT5G18620 38.115 244 127 7 1 242 221 442 6.97e-41 151
MS.gene97427.t1 AT5G18620 38.115 244 127 7 1 242 221 442 7.75e-41 151
MS.gene97427.t1 AT3G06400 37.398 246 126 8 1 242 216 437 8.57e-41 151
MS.gene97427.t1 AT3G06400 37.398 246 126 8 1 242 216 437 9.35e-41 151
MS.gene97427.t1 AT3G06400 37.398 246 126 8 1 242 216 437 9.53e-41 150
MS.gene97427.t1 AT3G06010 39.352 216 115 4 1 212 430 633 3.14e-39 146
MS.gene97427.t1 AT5G19310 38.889 216 115 4 1 212 149 351 4.18e-39 145
MS.gene97427.t1 AT5G19310 38.889 216 115 4 1 212 413 615 5.96e-39 145
MS.gene97427.t1 AT3G57300 34.100 261 138 3 1 232 613 868 2.09e-38 144
MS.gene97427.t1 AT2G28290 40.724 221 111 6 1 212 781 990 3.13e-38 144
MS.gene97427.t1 AT2G28290 40.724 221 111 6 1 212 782 991 3.13e-38 144
MS.gene97427.t1 AT2G28290 40.724 221 111 6 1 212 781 990 3.19e-38 144
MS.gene97427.t1 AT2G28290 40.724 221 111 6 1 212 781 990 3.19e-38 144
MS.gene97427.t1 AT2G28290 40.724 221 111 6 1 212 781 990 3.19e-38 144
MS.gene97427.t1 AT2G28290 40.724 221 111 6 1 212 782 991 3.19e-38 144
MS.gene97427.t1 AT2G13370 38.164 207 111 5 1 200 652 848 2.34e-37 141
MS.gene97427.t1 AT2G13370 38.164 207 111 5 1 200 652 848 2.34e-37 141
MS.gene97427.t1 AT2G13370 38.164 207 111 5 1 200 652 848 2.34e-37 141
MS.gene97427.t1 AT2G25170 33.793 290 154 8 1 272 317 586 5.77e-37 140
MS.gene97427.t1 AT2G25170 33.793 290 154 8 1 272 300 569 6.59e-37 140
MS.gene97427.t1 AT2G25170 33.793 290 154 8 1 272 300 569 6.59e-37 140
MS.gene97427.t1 AT2G25170 33.793 290 154 8 1 272 326 595 7.70e-37 139
MS.gene97427.t1 AT5G44800 35.943 281 153 8 1 272 716 978 1.87e-33 130
MS.gene97427.t1 AT4G31900 37.778 225 115 6 1 225 211 410 3.05e-32 126
MS.gene97427.t1 AT4G31900 37.778 225 115 6 1 225 252 451 3.38e-32 126
MS.gene97427.t1 AT4G31900 37.778 225 115 6 1 225 252 451 3.90e-32 126
MS.gene97427.t1 AT3G54280 33.624 229 119 7 1 213 1509 1720 3.13e-30 120
MS.gene97427.t1 AT3G54280 33.624 229 119 7 1 213 1478 1689 3.73e-30 120
MS.gene97427.t1 AT2G02090 32.917 240 133 6 1 232 241 460 1.33e-29 118
MS.gene97427.t1 AT2G46020 34.884 258 138 7 1 250 1008 1243 1.33e-29 119
MS.gene97427.t1 AT2G46020 34.884 258 138 7 1 250 1008 1243 1.33e-29 119
MS.gene97427.t1 AT2G46020 34.884 258 138 7 1 250 1008 1243 1.33e-29 119
MS.gene97427.t1 AT2G46020 34.496 258 138 6 1 250 1008 1242 2.49e-29 118
MS.gene97427.t1 AT2G46020 34.496 258 138 6 1 250 1008 1242 2.49e-29 118
MS.gene97427.t1 AT2G46020 34.496 258 138 6 1 250 1008 1242 2.49e-29 118
MS.gene97427.t1 AT3G12810 35.545 211 121 6 1 209 559 756 1.27e-28 115
MS.gene97427.t1 AT3G12810 35.545 211 121 6 1 209 563 760 1.32e-28 115
MS.gene97427.t1 AT1G03750 32.301 226 124 5 1 211 166 377 3.26e-23 100
MS.gene97427.t1 AT2G18760 29.583 240 139 9 1 212 471 708 2.80e-20 91.7
MS.gene97427.t1 AT2G18760 29.583 240 139 9 1 212 412 649 2.96e-20 91.3
MS.gene97427.t1 AT2G18760 29.583 240 139 9 1 212 412 649 2.96e-20 91.3
MS.gene97427.t1 AT2G18760 29.583 240 139 9 1 212 412 649 2.96e-20 91.3
MS.gene97427.t1 AT2G18760 29.583 240 139 9 1 212 412 649 2.96e-20 91.3
MS.gene97427.t1 AT2G18760 29.583 240 139 9 1 212 412 649 2.96e-20 91.3
MS.gene97427.t1 AT2G18760 29.583 240 139 9 1 212 412 649 2.96e-20 91.3
MS.gene97427.t1 AT5G63950 29.437 231 129 7 1 212 404 619 4.08e-17 82.0
MS.gene97427.t1 AT3G19210 29.787 235 137 9 1 222 213 432 4.25e-15 75.9
MS.gene97427.t1 AT3G19210 28.906 256 153 10 1 242 213 453 5.56e-15 75.5
MS.gene97427.t1 AT3G19210 29.787 235 137 9 1 222 213 432 7.08e-15 75.5
MS.gene97427.t1 AT5G63950 27.650 217 134 4 1 212 404 602 1.86e-14 73.9
MS.gene97427.t1 AT5G22750 26.556 241 141 7 7 232 468 687 6.71e-14 72.4
MS.gene97427.t1 AT1G11100 27.313 227 121 10 14 222 480 680 5.71e-12 66.6
MS.gene97427.t1 AT1G11100 27.313 227 121 10 14 222 623 823 6.59e-12 66.6

Find 55 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGAAGACTTCTAGATTA+GGG 0.273315 7.1:+54628297 None:intergenic
ATCATATGACATTGCACTAA+TGG 0.301910 7.1:-54628064 MS.gene97427:CDS
ACGCAGCCAATACACTTCTT+AGG 0.309403 7.1:+54626685 None:intergenic
ACGAACTAAATCAAAGCTTA+TGG 0.321042 7.1:-54626652 MS.gene97427:CDS
CAACCATCTGTCACACTTAA+CGG 0.346788 7.1:+54628344 None:intergenic
TCAGTTCCTTTCTACATTCA+AGG 0.364651 7.1:-54627610 MS.gene97427:CDS
TATTTGAAGACTTCTAGATT+AGG 0.390235 7.1:+54628296 None:intergenic
TGAAGTCTCTCCTTTACCTT+TGG 0.393861 7.1:+54626711 None:intergenic
TCAACTATCCCTCTTGTGTC+TGG 0.399734 7.1:+54626311 None:intergenic
TCAGAAAGGTTGTTCTGAAT+AGG 0.406467 7.1:+54627684 None:intergenic
TCAAATCCTAAGAAGTGTAT+TGG 0.434969 7.1:-54626691 MS.gene97427:CDS
AAAATGGTCCATGTGACAAC+TGG 0.446789 7.1:+54628479 None:intergenic
AAATATCGATAGATGGGATT+GGG 0.468883 7.1:-54628547 None:intergenic
TAAATATCGATAGATGGGAT+TGG 0.472774 7.1:-54628548 None:intergenic
GAAGATAACGTTAAGGATCT+AGG 0.473520 7.1:-54626340 MS.gene97427:CDS
TGACATTGCACTAATGGATA+AGG 0.477308 7.1:-54628058 MS.gene97427:CDS
ATGTTGGTGATAAAGAATAT+AGG 0.483159 7.1:-54628274 MS.gene97427:CDS
TAGATCCTTAACGTTATCTT+CGG 0.492430 7.1:+54626342 None:intergenic
GTATATATTTACGTTGTACA+TGG 0.499020 7.1:+54626457 None:intergenic
TTAATACACATGCCACGGAT+TGG 0.507169 7.1:-54626545 MS.gene97427:CDS
CTAGAAGTCTTCAAATATGT+TGG 0.508768 7.1:-54628290 MS.gene97427:CDS
CCACGGATTGGTTATCAAGA+TGG 0.512223 7.1:-54626533 MS.gene97427:CDS
TCATGATTCTCCAAAGGTAA+AGG 0.515395 7.1:-54626721 MS.gene97427:CDS
ATGGATCTGGTCGCTCTCAA+TGG 0.520416 7.1:-54626514 MS.gene97427:CDS
ATTGGTTATCAAGATGGATC+TGG 0.523674 7.1:-54626527 MS.gene97427:CDS
AACAAACTCACATTATGTGT+TGG 0.531473 7.1:+54628209 None:intergenic
CTCAATGGTACACCATAGAA+TGG 0.536339 7.1:-54626499 MS.gene97427:CDS
TATTACCGAAGATAACGTTA+AGG 0.542439 7.1:-54626347 MS.gene97427:CDS
GAACAACCTTTCTGAACTGT+GGG 0.548044 7.1:-54627676 MS.gene97427:CDS
CGTTAAGTGTGACAGATGGT+TGG 0.549837 7.1:-54628343 MS.gene97427:CDS
GACATCAGTGATCTTACCTC+AGG 0.549871 7.1:-54627588 MS.gene97427:intron
GTTAAGTGTGACAGATGGTT+GGG 0.553047 7.1:-54628342 MS.gene97427:CDS
TGATGTCCTTGAATGTAGAA+AGG 0.553693 7.1:+54627604 None:intergenic
AGAACAACCTTTCTGAACTG+TGG 0.559753 7.1:-54627677 MS.gene97427:CDS
AAAGTGCGCCAGTTGTCACA+TGG 0.576540 7.1:-54628487 MS.gene97427:CDS
AAATCAAAGCTTATGGAGTG+TGG 0.577677 7.1:-54626645 MS.gene97427:CDS
CCAGTCATCAACAACCGTCT+CGG 0.580391 7.1:+54627711 None:intergenic
GTTCTAATTAGATACTACCT+TGG 0.584609 7.1:-54626573 MS.gene97427:CDS
GATGTTAACAGCACATCGAA+TGG 0.592613 7.1:+54628084 None:intergenic
CCGAGACGGTTGTTGATGAC+TGG 0.593046 7.1:-54627711 MS.gene97427:CDS
TTTGAAGACTTCTAGATTAG+GGG 0.593362 7.1:+54628298 None:intergenic
TAAGCTTTGATTTAGTTCGT+CGG 0.595261 7.1:+54626655 None:intergenic
TCAACGCCCACAGTTCAGAA+AGG 0.595295 7.1:+54627670 None:intergenic
GGCTGTTTCCAGACACAAGA+GGG 0.603752 7.1:-54626319 MS.gene97427:CDS
CAATCATCGATGAAGCGCAA+AGG 0.618376 7.1:-54628005 MS.gene97427:CDS
TCGATGATTGCATACTGCCA+TGG 0.620230 7.1:+54628018 None:intergenic
AACAGTTCATGATTCTCCAA+AGG 0.622709 7.1:-54626727 MS.gene97427:intron
ATCGCTATATCATGCCGAGA+CGG 0.627534 7.1:-54627725 MS.gene97427:CDS
AATATAGGCGCAGTTTACGT+AGG 0.628169 7.1:-54628259 MS.gene97427:CDS
TACACAGTTGTCTCAGTGAG+AGG 0.631133 7.1:+54626606 None:intergenic
AGGCTGTTTCCAGACACAAG+AGG 0.660621 7.1:-54626320 MS.gene97427:CDS
TATATTTACGTTGTACATGG+AGG 0.665683 7.1:+54626460 None:intergenic
CCATCTTGATAACCAATCCG+TGG 0.675119 7.1:+54626533 None:intergenic
ACAGTTGTCTCAGTGAGAGG+TGG 0.681746 7.1:+54626609 None:intergenic
TGTCCGTTAAGTGTGACAGA+TGG 0.718251 7.1:-54628347 MS.gene97427:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAACTTATTAAAC+TGG - chr7.1:54628044-54628063 MS.gene97427:CDS 10.0%
!! TCTAATATTATCTTAAAATT+TGG - chr7.1:54627718-54627737 MS.gene97427:CDS 10.0%
!! ATTATCTTAAAATTTGGATT+GGG - chr7.1:54627724-54627743 MS.gene97427:CDS 15.0%
!! CTTAATTGAATACTATAAAT+AGG + chr7.1:54626912-54626931 None:intergenic 15.0%
!! TATTATCTTAAAATTTGGAT+TGG - chr7.1:54627723-54627742 MS.gene97427:CDS 15.0%
!! TTATTTATTCAATAATCACA+TGG + chr7.1:54628033-54628052 None:intergenic 15.0%
!!! TTAAACTTTTTAAACTTTAC+AGG - chr7.1:54627081-54627100 MS.gene97427:intron 15.0%
!! AATCATATTTGACTATCTTT+AGG - chr7.1:54626989-54627008 MS.gene97427:intron 20.0%
!! GATTTAAGAACATTTGATAA+CGG - chr7.1:54628451-54628470 MS.gene97427:intron 20.0%
!! GTTCTATAATTTATCATTAC+TGG - chr7.1:54627301-54627320 MS.gene97427:intron 20.0%
!! TTGCAATAATTATCTTCATT+AGG + chr7.1:54626721-54626740 None:intergenic 20.0%
!!! ACAGTTAGTATTAGTTTAAT+TGG - chr7.1:54627951-54627970 MS.gene97427:intron 20.0%
!!! ATTATTGCAATCAAATGTTT+TGG - chr7.1:54626731-54626750 MS.gene97427:intron 20.0%
!!! TATTAGTTTAATTGGTCTAA+AGG - chr7.1:54627959-54627978 MS.gene97427:intron 20.0%
!!! TATTTTTTACATACACTTGA+CGG + chr7.1:54626880-54626899 None:intergenic 20.0%
!!! TGTATACTAGTCTTAAAATT+TGG - chr7.1:54627406-54627425 MS.gene97427:intron 20.0%
! AGTGAATGAAAACTTTGATT+TGG - chr7.1:54626397-54626416 MS.gene97427:intron 25.0%
! ATAGTAGTGCTTATAAAGTT+TGG + chr7.1:54627481-54627500 None:intergenic 25.0%
! ATTTGAAGACTTCTAGATTA+GGG + chr7.1:54626556-54626575 None:intergenic 25.0%
! GTATATATTTACGTTGTACA+TGG + chr7.1:54628396-54628415 None:intergenic 25.0%
! TAAGACTAGTATACAACAAA+TGG + chr7.1:54627401-54627420 None:intergenic 25.0%
! TAGTAGTGCTTATAAAGTTT+GGG + chr7.1:54627480-54627499 None:intergenic 25.0%
! TATTTGAAGACTTCTAGATT+AGG + chr7.1:54626557-54626576 None:intergenic 25.0%
! TGATAGTCAATTTAGTCATT+CGG - chr7.1:54627046-54627065 MS.gene97427:intron 25.0%
!! ATTTTCTTTCTCAAATACCA+TGG - chr7.1:54626815-54626834 MS.gene97427:intron 25.0%
!!! ACTAGTCTTAAAATTTGGAT+TGG - chr7.1:54627411-54627430 MS.gene97427:intron 25.0%
!!! ATGTTGGTGATAAAGAATAT+AGG - chr7.1:54626576-54626595 MS.gene97427:CDS 25.0%
!!! ATTTTTTACATACACTTGAC+GGG + chr7.1:54626879-54626898 None:intergenic 25.0%
AAAAAGTTTAACCACTACAG+AGG + chr7.1:54627072-54627091 None:intergenic 30.0%
AAAATGATAATACTGACCTG+AGG + chr7.1:54627281-54627300 None:intergenic 30.0%
AACAAACTCACATTATGTGT+TGG + chr7.1:54626644-54626663 None:intergenic 30.0%
ACGAACTAAATCAAAGCTTA+TGG - chr7.1:54628198-54628217 MS.gene97427:intron 30.0%
ATCATATGACATTGCACTAA+TGG - chr7.1:54626786-54626805 MS.gene97427:intron 30.0%
CATGTGTATTAAAAAGTCCA+AGG + chr7.1:54628297-54628316 None:intergenic 30.0%
CTAGAAGTCTTCAAATATGT+TGG - chr7.1:54626560-54626579 MS.gene97427:CDS 30.0%
GTTCTAATTAGATACTACCT+TGG - chr7.1:54628277-54628296 MS.gene97427:CDS 30.0%
TAACCACTGTAAAAAGTAAC+AGG + chr7.1:54626481-54626500 None:intergenic 30.0%
TAGATCCTTAACGTTATCTT+CGG + chr7.1:54628511-54628530 None:intergenic 30.0%
TATATTTACGTTGTACATGG+AGG + chr7.1:54628393-54628412 None:intergenic 30.0%
TATTACCGAAGATAACGTTA+AGG - chr7.1:54628503-54628522 MS.gene97427:CDS 30.0%
TCTGATCATCAATTTCTTAC+AGG - chr7.1:54628477-54628496 MS.gene97427:intron 30.0%
TGACTATCTTTAGGTGTAAT+AGG - chr7.1:54626998-54627017 MS.gene97427:intron 30.0%
TTTGAAGACTTCTAGATTAG+GGG + chr7.1:54626555-54626574 None:intergenic 30.0%
! ACTTTTTAATACACATGCCA+CGG - chr7.1:54628300-54628319 MS.gene97427:CDS 30.0%
! GTTTTCATTCACTCACAAAA+TGG + chr7.1:54626390-54626409 None:intergenic 30.0%
! TAAGCTTTGATTTAGTTCGT+CGG + chr7.1:54628198-54628217 None:intergenic 30.0%
! TCAAATCCTAAGAAGTGTAT+TGG - chr7.1:54628159-54628178 MS.gene97427:intron 30.0%
! TTTTCTTAGAAGCCATTCTA+TGG + chr7.1:54628366-54628385 None:intergenic 30.0%
!!! TTTCCTGTTACTTTTTACAG+TGG - chr7.1:54626475-54626494 MS.gene97427:CDS 30.0%
AAATCAAAGCTTATGGAGTG+TGG - chr7.1:54628205-54628224 MS.gene97427:intron 35.0%
AACAGTTCATGATTCTCCAA+AGG - chr7.1:54628123-54628142 MS.gene97427:intron 35.0%
AACCAACAGGATGAAAATGT+TGG - chr7.1:54627854-54627873 MS.gene97427:intron 35.0%
ACTACTATTGCCATATCTCT+AGG - chr7.1:54627493-54627512 MS.gene97427:intron 35.0%
ATAATCACATGGCACTCAAT+TGG + chr7.1:54628022-54628041 None:intergenic 35.0%
ATTGGTTATCAAGATGGATC+TGG - chr7.1:54628323-54628342 MS.gene97427:CDS 35.0%
GAAGATAACGTTAAGGATCT+AGG - chr7.1:54628510-54628529 MS.gene97427:CDS 35.0%
GTAAAAAGTAACAGGAAAGC+AGG + chr7.1:54626473-54626492 None:intergenic 35.0%
TAACACATTGCCTAGAGATA+TGG + chr7.1:54627816-54627835 None:intergenic 35.0%
TCAGTTCCTTTCTACATTCA+AGG - chr7.1:54627240-54627259 MS.gene97427:intron 35.0%
TCATGATTCTCCAAAGGTAA+AGG - chr7.1:54628129-54628148 MS.gene97427:intron 35.0%
TCGTAGTGTTTACAAAGCTT+GGG + chr7.1:54627790-54627809 None:intergenic 35.0%
TGATGTCCTTGAATGTAGAA+AGG + chr7.1:54627249-54627268 None:intergenic 35.0%
TTCGTAGTGTTTACAAAGCT+TGG + chr7.1:54627791-54627810 None:intergenic 35.0%
TTGGTCTAAAGGATTTGAAG+AGG - chr7.1:54627970-54627989 MS.gene97427:intron 35.0%
TTTCATTGAGTCGTTGAATC+TGG - chr7.1:54626668-54626687 MS.gene97427:CDS 35.0%
! AGTCAACACAATGAAGGTTT+TGG - chr7.1:54627544-54627563 MS.gene97427:intron 35.0%
! TCAGAAAGGTTGTTCTGAAT+AGG + chr7.1:54627169-54627188 None:intergenic 35.0%
! TGACATTGCACTAATGGATA+AGG - chr7.1:54626792-54626811 MS.gene97427:intron 35.0%
! TTTTGCATGCCATCTGTTTT+TGG - chr7.1:54627208-54627227 MS.gene97427:intron 35.0%
!! TTCATTGTGTTGACTGTGAA+GGG + chr7.1:54627539-54627558 None:intergenic 35.0%
!! TTTGCATGCCATCTGTTTTT+GGG - chr7.1:54627209-54627228 MS.gene97427:intron 35.0%
AAAATGGTCCATGTGACAAC+TGG + chr7.1:54626374-54626393 None:intergenic 40.0%
AATATAGGCGCAGTTTACGT+AGG - chr7.1:54626591-54626610 MS.gene97427:CDS 40.0%
ACCCAAATGCTGCAATTAGA+CGG - chr7.1:54627894-54627913 MS.gene97427:intron 40.0%
ACTACGAAAGCCATATCTCT+AGG - chr7.1:54627803-54627822 MS.gene97427:intron 40.0%
AGAACAACCTTTCTGAACTG+TGG - chr7.1:54627173-54627192 MS.gene97427:intron 40.0%
ATTGAGTCGTTGAATCTGGA+TGG - chr7.1:54626672-54626691 MS.gene97427:CDS 40.0%
CAACAGGATGAAAATGTTGG+AGG - chr7.1:54627857-54627876 MS.gene97427:intron 40.0%
CAACCATCTGTCACACTTAA+CGG + chr7.1:54626509-54626528 None:intergenic 40.0%
CCTATCCTAGAACTGATGTT+GGG + chr7.1:54627697-54627716 None:intergenic 40.0%
CTATCCTAGAACTGATGTTG+GGG + chr7.1:54627696-54627715 None:intergenic 40.0%
CTATCTCAACCCTACAAAAC+CGG - chr7.1:54627436-54627455 MS.gene97427:intron 40.0%
CTCAATGGTACACCATAGAA+TGG - chr7.1:54628351-54628370 MS.gene97427:CDS 40.0%
CTTCACAGTCAACACAATGA+AGG - chr7.1:54627538-54627557 MS.gene97427:intron 40.0%
GAACAACCTTTCTGAACTGT+GGG - chr7.1:54627174-54627193 MS.gene97427:intron 40.0%
GATGTTAACAGCACATCGAA+TGG + chr7.1:54626769-54626788 None:intergenic 40.0%
GCATTCCTAATTCCGCAATT+AGG - chr7.1:54627581-54627600 MS.gene97427:intron 40.0%
GCCTAACAACCTTACAAAAC+CGG - chr7.1:54627746-54627765 MS.gene97427:CDS 40.0%
GTTAAGTGTGACAGATGGTT+GGG - chr7.1:54626508-54626527 MS.gene97427:CDS 40.0%
TCTAGTGTCCCAAAAACAGA+TGG + chr7.1:54627220-54627239 None:intergenic 40.0%
TGAAGTCTCTCCTTTACCTT+TGG + chr7.1:54628142-54628161 None:intergenic 40.0%
TTAATACACATGCCACGGAT+TGG - chr7.1:54628305-54628324 MS.gene97427:CDS 40.0%
TTCCTAATTCCGCAATTAGG+TGG - chr7.1:54627584-54627603 MS.gene97427:intron 40.0%
TTGAAATTCCGCCTTCATTG+TGG + chr7.1:54627931-54627950 None:intergenic 40.0%
! CTCCAACATTTTCATCCTGT+TGG + chr7.1:54627859-54627878 None:intergenic 40.0%
! CTTTTAGCGTCTTCTGATTG+TGG - chr7.1:54628086-54628105 MS.gene97427:CDS 40.0%
! TCATCCTGTTGGTTGTGAAT+GGG + chr7.1:54627848-54627867 None:intergenic 40.0%
! TTCATCCTGTTGGTTGTGAA+TGG + chr7.1:54627849-54627868 None:intergenic 40.0%
!! AAAACCGGCTTGTAAAGTGA+GGG - chr7.1:54627761-54627780 MS.gene97427:intron 40.0%
!! ACCTTAAAAGCCGGTTTTGT+AGG + chr7.1:54627449-54627468 None:intergenic 40.0%
!! CAACACAATGAAGGTTTTGG+AGG - chr7.1:54627547-54627566 MS.gene97427:intron 40.0%
!! CCTTAAAAGCCGGTTTTGTA+GGG + chr7.1:54627448-54627467 None:intergenic 40.0%
!! CTTCATTGTGTTGACTGTGA+AGG + chr7.1:54627540-54627559 None:intergenic 40.0%
!! CTTTACAAGCCGGTTTTGTA+AGG + chr7.1:54627758-54627777 None:intergenic 40.0%
!! TCATTGTGTTGACTGTGAAG+GGG + chr7.1:54627538-54627557 None:intergenic 40.0%
!!! AAAACCGGCTTTTAAGGTGA+GGG - chr7.1:54627451-54627470 MS.gene97427:intron 40.0%
AATGCTGCAATTAGACGGCT+AGG - chr7.1:54627899-54627918 MS.gene97427:intron 45.0%
AATGTTGGAGGCTGCAATGA+AGG - chr7.1:54627869-54627888 MS.gene97427:intron 45.0%
AATTCCGCAATTAGGTGGCT+AGG - chr7.1:54627589-54627608 MS.gene97427:CDS 45.0%
ACGCAGCCAATACACTTCTT+AGG + chr7.1:54628168-54628187 None:intergenic 45.0%
AGCCACCTAATTGCGGAATT+AGG + chr7.1:54627589-54627608 None:intergenic 45.0%
AGCCGTCTAATTGCAGCATT+TGG + chr7.1:54627899-54627918 None:intergenic 45.0%
ATCGCTATATCATGCCGAGA+CGG - chr7.1:54627125-54627144 MS.gene97427:intron 45.0%
ATGATAAACCGTCCATCCTG+TGG + chr7.1:54627999-54628018 None:intergenic 45.0%
ATGCTGCAATTAGACGGCTA+GGG - chr7.1:54627900-54627919 MS.gene97427:intron 45.0%
ATTCCGCAATTAGGTGGCTA+GGG - chr7.1:54627590-54627609 MS.gene97427:CDS 45.0%
CAATCATCGATGAAGCGCAA+AGG - chr7.1:54626845-54626864 MS.gene97427:intron 45.0%
CGTTAAGTGTGACAGATGGT+TGG - chr7.1:54626507-54626526 MS.gene97427:CDS 45.0%
GACATCAGTGATCTTACCTC+AGG - chr7.1:54627262-54627281 MS.gene97427:intron 45.0%
GCCGTCTAATTGCAGCATTT+GGG + chr7.1:54627898-54627917 None:intergenic 45.0%
GCCTATCCTAGAACTGATGT+TGG + chr7.1:54627698-54627717 None:intergenic 45.0%
TACACAGTTGTCTCAGTGAG+AGG + chr7.1:54628247-54628266 None:intergenic 45.0%
TCGATGATTGCATACTGCCA+TGG + chr7.1:54626835-54626854 None:intergenic 45.0%
TGAACCCCAACATCAGTTCT+AGG - chr7.1:54627689-54627708 MS.gene97427:CDS 45.0%
TGTCCGTTAAGTGTGACAGA+TGG - chr7.1:54626503-54626522 MS.gene97427:CDS 45.0%
! CCATCTTGATAACCAATCCG+TGG + chr7.1:54628320-54628339 None:intergenic 45.0%
!! CAAAACCGGCTTGTAAAGTG+AGG - chr7.1:54627760-54627779 MS.gene97427:intron 45.0%
!! CCACGGATTGGTTATCAAGA+TGG - chr7.1:54628317-54628336 MS.gene97427:CDS 45.0%
!! CCCAACATCAGTTCTAGGAT+AGG - chr7.1:54627694-54627713 MS.gene97427:CDS 45.0%
!! CCCTACAAAACCGGCTTTTA+AGG - chr7.1:54627445-54627464 MS.gene97427:intron 45.0%
!! CGGTTTTGTAGGGTTGAGAT+AGG + chr7.1:54627438-54627457 None:intergenic 45.0%
!! GCCGGTTTTGTAAGGTTGTT+AGG + chr7.1:54627750-54627769 None:intergenic 45.0%
!!! CAAAACCGGCTTTTAAGGTG+AGG - chr7.1:54627450-54627469 MS.gene97427:intron 45.0%
!!! CACAATGAAGGTTTTGGAGG+TGG - chr7.1:54627550-54627569 MS.gene97427:intron 45.0%
!!! GGTTTTGGAGGTGGAAATGA+AGG - chr7.1:54627559-54627578 MS.gene97427:intron 45.0%
AAAGTGCGCCAGTTGTCACA+TGG - chr7.1:54626363-54626382 MS.gene97427:intron 50.0%
ACAGTTGTCTCAGTGAGAGG+TGG + chr7.1:54628244-54628263 None:intergenic 50.0%
ATGGATCTGGTCGCTCTCAA+TGG - chr7.1:54628336-54628355 MS.gene97427:CDS 50.0%
CCAGTCATCAACAACCGTCT+CGG + chr7.1:54627142-54627161 None:intergenic 50.0%
CTAGGGACAGACCACAATGA+AGG - chr7.1:54627917-54627936 MS.gene97427:intron 50.0%
CTAGGGGCTGATTGCAATGA+CGG - chr7.1:54627607-54627626 MS.gene97427:CDS 50.0%
GAAGCCCTCACTTTACAAGC+CGG + chr7.1:54627768-54627787 None:intergenic 50.0%
GCCATATCTCTAGGCAACGT+GGG - chr7.1:54627502-54627521 MS.gene97427:intron 50.0%
GGATTTGAAGAGGCTACCAC+AGG - chr7.1:54627980-54627999 MS.gene97427:intron 50.0%
TAGTCATTCGGCCTCTGTAG+TGG - chr7.1:54627058-54627077 MS.gene97427:intron 50.0%
TCAACGCCCACAGTTCAGAA+AGG + chr7.1:54627183-54627202 None:intergenic 50.0%
TCCCACGTTGCCTAGAGATA+TGG + chr7.1:54627506-54627525 None:intergenic 50.0%
TCTAACACCCCTTCGTGCTT+GGG - chr7.1:54627637-54627656 MS.gene97427:CDS 50.0%
TCTGCCCATTCACAACCAAC+AGG - chr7.1:54627841-54627860 MS.gene97427:intron 50.0%
TGCCATATCTCTAGGCAACG+TGG - chr7.1:54627501-54627520 MS.gene97427:intron 50.0%
TTCCGCAATTAGGTGGCTAG+GGG - chr7.1:54627591-54627610 MS.gene97427:CDS 50.0%
TTCTAACACCCCTTCGTGCT+TGG - chr7.1:54627636-54627655 MS.gene97427:CDS 50.0%
TTGAAGAGGCTACCACAGGA+TGG - chr7.1:54627984-54628003 MS.gene97427:intron 50.0%
! AGGCTGTTTCCAGACACAAG+AGG - chr7.1:54628530-54628549 MS.gene97427:CDS 50.0%
! GGCTGTTTCCAGACACAAGA+GGG - chr7.1:54628531-54628550 MS.gene97427:CDS 50.0%
!! TTGTGTTGACTGTGAAGGGG+TGG + chr7.1:54627535-54627554 None:intergenic 50.0%
AGAGGCTACCACAGGATGGA+CGG - chr7.1:54627988-54628007 MS.gene97427:CDS 55.0%
AGCCCCTAGCCACCTAATTG+CGG + chr7.1:54627596-54627615 None:intergenic 55.0%
GCAGCCCTCACCTTAAAAGC+CGG + chr7.1:54627458-54627477 None:intergenic 55.0%
GGGACAGACCACAATGAAGG+CGG - chr7.1:54627920-54627939 MS.gene97427:intron 55.0%
TCGTTGGACCCAAGCACGAA+GGG + chr7.1:54627648-54627667 None:intergenic 55.0%
!! CCGAGACGGTTGTTGATGAC+TGG - chr7.1:54627139-54627158 MS.gene97427:intron 55.0%
AATCCACGCTCCGAGCTCGT+TGG + chr7.1:54627664-54627683 None:intergenic 60.0%
CGTTGGACCCAAGCACGAAG+GGG + chr7.1:54627647-54627666 None:intergenic 60.0%
CTCGTTGGACCCAAGCACGA+AGG + chr7.1:54627649-54627668 None:intergenic 60.0%
GTGCTTGGGTCCAACGAGCT+CGG - chr7.1:54627651-54627670 MS.gene97427:CDS 60.0%
GGTCCAACGAGCTCGGAGCG+TGG - chr7.1:54627658-54627677 MS.gene97427:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 54626315 54628557 54626315 ID=MS.gene97427
chr7.1 mRNA 54626315 54628557 54626315 ID=MS.gene97427.t1;Parent=MS.gene97427
chr7.1 exon 54628479 54628557 54628479 ID=MS.gene97427.t1.exon1;Parent=MS.gene97427.t1
chr7.1 CDS 54628479 54628557 54628479 ID=cds.MS.gene97427.t1;Parent=MS.gene97427.t1
chr7.1 exon 54628220 54628377 54628220 ID=MS.gene97427.t1.exon2;Parent=MS.gene97427.t1
chr7.1 CDS 54628220 54628377 54628220 ID=cds.MS.gene97427.t1;Parent=MS.gene97427.t1
chr7.1 exon 54627987 54628115 54627987 ID=MS.gene97427.t1.exon3;Parent=MS.gene97427.t1
chr7.1 CDS 54627987 54628115 54627987 ID=cds.MS.gene97427.t1;Parent=MS.gene97427.t1
chr7.1 exon 54627589 54627769 54627589 ID=MS.gene97427.t1.exon4;Parent=MS.gene97427.t1
chr7.1 CDS 54627589 54627769 54627589 ID=cds.MS.gene97427.t1;Parent=MS.gene97427.t1
chr7.1 exon 54626469 54626744 54626469 ID=MS.gene97427.t1.exon5;Parent=MS.gene97427.t1
chr7.1 CDS 54626469 54626744 54626469 ID=cds.MS.gene97427.t1;Parent=MS.gene97427.t1
chr7.1 exon 54626315 54626373 54626315 ID=MS.gene97427.t1.exon6;Parent=MS.gene97427.t1
chr7.1 CDS 54626315 54626373 54626315 ID=cds.MS.gene97427.t1;Parent=MS.gene97427.t1
Gene Sequence

>MS.gene97427

ATGGGATTGGGCAAGACATTGCAAGCTATCTCATTTTTAAGCTATTTGAAAGTGCGCCAGTTGTCACATGGACCATTTTGTGAGTGAATGAAAACTTTGATTTGGATAGTTTTGTTTTCACGAAATTTCTATTGAAATAAGCACTTATACATTTTCCTGCTTTCCTGTTACTTTTTACAGTGGTTATATGTCCGTTAAGTGTGACAGATGGTTGGGTGTCTGAGATAGTCAAATATGCCCCTAATCTAGAAGTCTTCAAATATGTTGGTGATAAAGAATATAGGCGCAGTTTACGTAGGAAAACACATGAACATGTAACAAAGCAGCCAACACATAATGTGAGTTTGTTATATTTTCATTGAGTCGTTGAATCTGGATGGCTTTTCTTTCAACAGTTCTATTTCCTAATGAAGATAATTATTGCAATCAAATGTTTTGGCAGTTCATGTTGCCATTCGATGTGCTGTTAACATCATATGACATTGCACTAATGGATAAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATCGATGAAGCGCAAAGGCTTAAAAACCCGTCAAGTGTATGTAAAAAATAACTTAAATGCCTATTTATAGTATTCAATTAAGAATTTGCTTCTTAATGTTAAATTTGTGTTTCACTTTTCATTTTTATTGATCATCAATAATCATATTTGACTATCTTTAGGTGTAATAGGAACAAATCATGCATTTCAGACAGTTTGATAGTCAATTTAGTCATTCGGCCTCTGTAGTGGTTAAACTTTTTAAACTTTACAGGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCGAGACGGTTGTTGATGACTGGCACTCCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGCATTTTTGCATGCCATCTGTTTTTGGGACACTAGATCAGTTCCTTTCTACATTCAAGGACATCAGTGATCTTACCTCAGGTCAGTATTATCATTTTGTTCTATAATTTATCATTACTGGCTTGTTAATTGTTGTGTCTCTTAGAAGTTTGCTGCACACTTATAGAATCTGATTGCTTTACTGTAGACATTGATCCATTTGTTGTATACTAGTCTTAAAATTTGGATTGGACCTATCTCAACCCTACAAAACCGGCTTTTAAGGTGAGGGCTGCCCAAACTTTATAAGCACTACTATTGCCATATCTCTAGGCAACGTGGGACTAAATCCACCCCTTCACAGTCAACACAATGAAGGTTTTGGAGGTGGAAATGAAGGCATTCCTAATTCCGCAATTAGGTGGCTAGGGGCTGATTGCAATGACGGTCGAATTTCTAACACCCCTTCGTGCTTGGGTCCAACGAGCTCGGAGCGTGGATTATGCTTGAACCCCAACATCAGTTCTAGGATAGGCTCTAATATTATCTTAAAATTTGGATTGGGCCTAACAACCTTACAAAACCGGCTTGTAAAGTGAGGGCTTCCCAAGCTTTGTAAACACTACGAAAGCCATATCTCTAGGCAATGTGTTAATAAATCTGCCCATTCACAACCAACAGGATGAAAATGTTGGAGGCTGCAATGAAGGTAACCCAAATGCTGCAATTAGACGGCTAGGGACAGACCACAATGAAGGCGGAATTTCAAACAGTTAGTATTAGTTTAATTGGTCTAAAGGATTTGAAGAGGCTACCACAGGATGGACGGTTTATCATCCAATTGAGTGCCATGTGATTATTGAATAAATAAACTTATTAAACTGGCAACATAATTATTGTCTTGCTTTTAGCGTCTTCTGATTGTGGCAGCTTTGCTTCATAACAGTTCATGATTCTCCAAAGGTAAAGGAGAGACTTCAAATCCTAAGAAGTGTATTGGCTGCGTTTATGCTCCGACGAACTAAATCAAAGCTTATGGAGTGTGGAAGTTTAGTGCTGCCACCTCTCACTGAGACAACTGTGTATGTTGTACTTGTTCTAATTAGATACTACCTTGGACTTTTTAATACACATGCCACGGATTGGTTATCAAGATGGATCTGGTCGCTCTCAATGGTACACCATAGAATGGCTTCTAAGAAAATATTCCTCCATGTACAACGTAAATATATACGTGTAAGTTGTAATCTTTCTATCAGATCAAAATCAGATTTAAGAACATTTGATAACGGATATCTGATCATCAATTTCTTACAGGTATTATTACCGAAGATAACGTTAAGGATCTAGGCTGTTTCCAGACACAAGAGGGATAG
Protein sequence

>MS.gene97427.t1

MGLGKTLQAISFLSYLKVRQLSHGPFLVICPLSVTDGWVSEIVKYAPNLEVFKYVGDKEYRRSLRRKTHEHVTKQPTHNFMLPFDVLLTSYDIALMDKDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKERLQILRSVLAAFMLRRTKSKLMECGSLVLPPLTETTVYVVLVLIRYYLGLFNTHATDWLSRWIWSLSMVHHRMASKKIFLHVQRIITEDNVKDLGCFQTQEG