Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97535.t1 | XP_024626123.1 | 83.5 | 424 | 45 | 3 | 1 | 418 | 1 | 405 | 5.70E-166 | 594 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97535.t1 | Q6X7J4 | 39.8 | 427 | 199 | 9 | 1 | 418 | 1 | 378 | 3.6e-36 | 154.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97535.t1 | U5LKY5 | 83.5 | 424 | 45 | 3 | 1 | 418 | 1 | 405 | 4.1e-166 | 594.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene97535.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97535.t1 | MTR_7g025010 | 87.470 | 423 | 28 | 3 | 1 | 417 | 1 | 404 | 0.0 | 732 |
| MS.gene97535.t1 | MTR_4g088070 | 60.165 | 364 | 132 | 5 | 56 | 417 | 20 | 372 | 2.01e-135 | 395 |
| MS.gene97535.t1 | MTR_4g088080 | 52.991 | 351 | 117 | 6 | 7 | 351 | 8 | 316 | 1.60e-105 | 315 |
| MS.gene97535.t1 | MTR_2g015000 | 41.573 | 445 | 194 | 13 | 1 | 418 | 1 | 406 | 8.60e-82 | 259 |
| MS.gene97535.t1 | MTR_3g462480 | 59.524 | 84 | 28 | 1 | 344 | 421 | 10 | 93 | 9.98e-25 | 97.8 |
| MS.gene97535.t1 | MTR_6g027390 | 65.000 | 60 | 21 | 0 | 57 | 116 | 24 | 83 | 2.11e-22 | 97.1 |
| MS.gene97535.t1 | MTR_7g086940 | 68.333 | 60 | 19 | 0 | 55 | 114 | 18 | 77 | 2.22e-22 | 96.7 |
| MS.gene97535.t1 | MTR_4g088065 | 51.351 | 111 | 31 | 3 | 74 | 173 | 134 | 232 | 1.78e-21 | 93.6 |
| MS.gene97535.t1 | MTR_4g084550 | 46.377 | 69 | 37 | 0 | 60 | 128 | 59 | 127 | 4.54e-18 | 82.0 |
| MS.gene97535.t1 | MTR_8g107210 | 50.000 | 62 | 31 | 0 | 65 | 126 | 96 | 157 | 1.20e-15 | 78.2 |
| MS.gene97535.t1 | MTR_5g081990 | 41.667 | 72 | 42 | 0 | 55 | 126 | 23 | 94 | 4.88e-15 | 73.6 |
| MS.gene97535.t1 | MTR_5g021930 | 48.438 | 64 | 32 | 1 | 65 | 127 | 30 | 93 | 1.31e-14 | 74.7 |
| MS.gene97535.t1 | MTR_1g019130 | 41.975 | 81 | 42 | 1 | 65 | 140 | 90 | 170 | 5.04e-14 | 71.6 |
| MS.gene97535.t1 | MTR_1g115315 | 46.774 | 62 | 33 | 0 | 63 | 124 | 83 | 144 | 7.26e-14 | 71.6 |
| MS.gene97535.t1 | MTR_1g115315 | 46.774 | 62 | 33 | 0 | 63 | 124 | 83 | 144 | 8.04e-14 | 71.6 |
| MS.gene97535.t1 | MTR_1g019130 | 41.975 | 81 | 42 | 1 | 65 | 140 | 90 | 170 | 2.21e-13 | 69.7 |
| MS.gene97535.t1 | MTR_4g063735 | 45.161 | 62 | 34 | 0 | 65 | 126 | 25 | 86 | 3.55e-13 | 69.7 |
| MS.gene97535.t1 | MTR_3g115620 | 32.500 | 120 | 69 | 3 | 63 | 170 | 80 | 199 | 5.62e-13 | 68.2 |
| MS.gene97535.t1 | MTR_7g060630 | 41.096 | 73 | 43 | 0 | 59 | 131 | 2 | 74 | 1.92e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97535.t1 | AT2G33880 | 33.790 | 438 | 231 | 10 | 1 | 429 | 1 | 388 | 1.72e-56 | 191 |
| MS.gene97535.t1 | AT2G33880 | 33.489 | 427 | 226 | 9 | 1 | 418 | 1 | 378 | 6.46e-54 | 184 |
| MS.gene97535.t1 | AT5G45980 | 53.676 | 136 | 53 | 2 | 1 | 136 | 1 | 126 | 1.87e-41 | 150 |
| MS.gene97535.t1 | AT3G03660 | 67.797 | 59 | 18 | 1 | 59 | 116 | 26 | 84 | 7.89e-22 | 95.1 |
| MS.gene97535.t1 | AT3G03660 | 67.797 | 59 | 18 | 1 | 59 | 116 | 26 | 84 | 1.38e-21 | 94.7 |
| MS.gene97535.t1 | AT3G03660 | 67.797 | 59 | 18 | 1 | 59 | 116 | 26 | 84 | 1.52e-21 | 94.7 |
| MS.gene97535.t1 | AT3G03660 | 67.797 | 59 | 18 | 1 | 59 | 116 | 26 | 84 | 2.36e-21 | 94.7 |
| MS.gene97535.t1 | AT5G17810 | 68.519 | 54 | 17 | 0 | 63 | 116 | 19 | 72 | 5.98e-21 | 92.4 |
| MS.gene97535.t1 | AT5G17810 | 68.519 | 54 | 17 | 0 | 63 | 116 | 19 | 72 | 6.27e-21 | 92.4 |
| MS.gene97535.t1 | AT5G17810 | 68.519 | 54 | 17 | 0 | 63 | 116 | 19 | 72 | 6.27e-21 | 92.4 |
| MS.gene97535.t1 | AT5G05770 | 40.000 | 80 | 45 | 1 | 65 | 141 | 29 | 108 | 6.82e-15 | 71.2 |
| MS.gene97535.t1 | AT3G18010 | 38.710 | 93 | 54 | 1 | 65 | 157 | 76 | 165 | 8.65e-15 | 75.9 |
| MS.gene97535.t1 | AT3G11260 | 41.558 | 77 | 45 | 0 | 52 | 128 | 11 | 87 | 1.69e-14 | 72.0 |
| MS.gene97535.t1 | AT4G35550 | 46.032 | 63 | 34 | 0 | 63 | 125 | 97 | 159 | 3.88e-14 | 72.8 |
| MS.gene97535.t1 | AT2G17950 | 44.444 | 81 | 41 | 2 | 65 | 144 | 38 | 115 | 5.94e-14 | 72.4 |
| MS.gene97535.t1 | AT1G46480 | 46.774 | 62 | 33 | 0 | 65 | 126 | 90 | 151 | 9.14e-14 | 70.1 |
| MS.gene97535.t1 | AT1G20700 | 44.444 | 63 | 35 | 0 | 63 | 125 | 31 | 93 | 1.50e-13 | 68.2 |
| MS.gene97535.t1 | AT1G20700 | 44.444 | 63 | 35 | 0 | 63 | 125 | 93 | 155 | 2.83e-13 | 68.9 |
| MS.gene97535.t1 | AT1G20700 | 44.444 | 63 | 35 | 0 | 63 | 125 | 93 | 155 | 3.04e-13 | 68.9 |
| MS.gene97535.t1 | AT1G46480 | 46.774 | 62 | 33 | 0 | 65 | 126 | 90 | 151 | 4.19e-13 | 69.3 |
| MS.gene97535.t1 | AT5G59340 | 41.935 | 62 | 36 | 0 | 65 | 126 | 14 | 75 | 2.56e-12 | 67.4 |
| MS.gene97535.t1 | AT2G28610 | 42.647 | 68 | 39 | 0 | 59 | 126 | 2 | 69 | 2.77e-12 | 67.0 |
| MS.gene97535.t1 | AT2G01500 | 47.273 | 55 | 29 | 0 | 65 | 119 | 61 | 115 | 1.12e-11 | 65.5 |
| MS.gene97535.t1 | AT5G46010 | 46.154 | 65 | 34 | 1 | 61 | 124 | 50 | 114 | 1.92e-11 | 61.2 |
Find 110 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCATCTTGGCTTTGGTTC+TGG | 0.191744 | 7.2:+74532794 | None:intergenic |
| CAAGACCCACAACTTAATTT+TGG | 0.218741 | 7.2:-74532059 | MS.gene97535:CDS |
| ATGAACTATAGAAGTGTTAA+TGG | 0.220101 | 7.2:-74532251 | MS.gene97535:CDS |
| CATAGGTTTAATCACTTATC+TGG | 0.257497 | 7.2:-74532278 | MS.gene97535:CDS |
| AAAGGATGCACGAACGTTAA+AGG | 0.277456 | 7.2:+74531448 | None:intergenic |
| AATAAGCATCAACTTGGTTT+TGG | 0.278040 | 7.2:+74532411 | None:intergenic |
| ATTGTAACATCGAGCAATAT+TGG | 0.307743 | 7.2:-74532494 | MS.gene97535:CDS |
| AATTAAGTTGTGGGTCTTGC+TGG | 0.313309 | 7.2:+74532063 | None:intergenic |
| ATGCGAATTTGCTGTGGCTT+TGG | 0.314500 | 7.2:+74532770 | None:intergenic |
| TTTGGGTTCCATCTTGGCTT+TGG | 0.323964 | 7.2:+74532788 | None:intergenic |
| TAAACAAAGCAGATGTTATA+AGG | 0.328927 | 7.2:+74531311 | None:intergenic |
| TGTGGCTTTGGGTTCCATCT+TGG | 0.336737 | 7.2:+74532782 | None:intergenic |
| CTCAACTCATCTCTCTTAAC+TGG | 0.341388 | 7.2:-74533673 | MS.gene97535:CDS |
| TGCGAATTTGCTGTGGCTTT+GGG | 0.349806 | 7.2:+74532771 | None:intergenic |
| TTGATGTTGATGATCAATAA+TGG | 0.357917 | 7.2:+74531944 | None:intergenic |
| TTTAACGTTCGTGCATCCTT+TGG | 0.359074 | 7.2:-74531446 | MS.gene97535:CDS |
| CGTGAACAATTACAAGAGTT+TGG | 0.359135 | 7.2:-74532686 | MS.gene97535:CDS |
| CTCGAAGCCATCTTCAACTC+AGG | 0.362285 | 7.2:-74532746 | MS.gene97535:CDS |
| TGTTGTGTTGTCATGGCATT+AGG | 0.362713 | 7.2:+74532299 | None:intergenic |
| CATGAGATCATCATGAACTA+TGG | 0.364182 | 7.2:-74532170 | MS.gene97535:CDS |
| TCATCGTCATCATCTTCTTC+TGG | 0.368652 | 7.2:-74532542 | MS.gene97535:CDS |
| ATCTTCGTAATTTCCTCCCT+TGG | 0.380246 | 7.2:+74532710 | None:intergenic |
| TACTAAGGACGCCTCATTCA+TGG | 0.386072 | 7.2:-74531483 | MS.gene97535:CDS |
| TGATGTTGATGATCAATAAT+GGG | 0.399034 | 7.2:+74531945 | None:intergenic |
| TCCAGTTCTAACCGATGAAT+GGG | 0.405372 | 7.2:-74531390 | MS.gene97535:CDS |
| CTCGATGTTACAATTTCATC+GGG | 0.416478 | 7.2:+74532503 | None:intergenic |
| GGATTCTCCAATGCTAATGA+TGG | 0.420455 | 7.2:-74532473 | MS.gene97535:CDS |
| TCAGGATTTGGCGTGGAAGA+TGG | 0.430982 | 7.2:-74531527 | MS.gene97535:intron |
| TTCGTAATTTCCTCCCTTGG+TGG | 0.432006 | 7.2:+74532713 | None:intergenic |
| ATGGGGAATGGAACAGCAAC+AGG | 0.432330 | 7.2:+74531963 | None:intergenic |
| CCCCATTCATCGGTTAGAAC+TGG | 0.434360 | 7.2:+74531389 | None:intergenic |
| GCCTTGAGAATTCCGTTGGT+TGG | 0.439358 | 7.2:+74533696 | None:intergenic |
| CCATGGTGCTACTTATTACC+TGG | 0.446959 | 7.2:-74531345 | MS.gene97535:CDS |
| AAGGATGCACGAACGTTAAA+GGG | 0.448612 | 7.2:+74531449 | None:intergenic |
| ATCAACATTCTGTTGAGGTA+AGG | 0.456180 | 7.2:+74532208 | None:intergenic |
| CTCCAGTTCTAACCGATGAA+TGG | 0.457716 | 7.2:-74531391 | MS.gene97535:CDS |
| CGCCTCATTCATGGTTGATG+TGG | 0.462527 | 7.2:-74531474 | MS.gene97535:CDS |
| GCAGTTCTCTTTGACTCCTC+TGG | 0.463999 | 7.2:-74531416 | MS.gene97535:CDS |
| GCCTCATTCATGGTTGATGT+GGG | 0.464076 | 7.2:-74531473 | MS.gene97535:CDS |
| CCTCTTCCTCCGACTACCAT+TGG | 0.468440 | 7.2:-74531990 | MS.gene97535:CDS |
| TCATTGATATGATTCTTCAC+AGG | 0.474131 | 7.2:+74532332 | None:intergenic |
| GTGTTTCTCGTTTCTTGTTG+TGG | 0.475098 | 7.2:+74532588 | None:intergenic |
| CACCATCCCTGAGTTGAAGA+TGG | 0.477544 | 7.2:+74532739 | None:intergenic |
| TCAACATTCTGTTGAGGTAA+GGG | 0.481383 | 7.2:+74532209 | None:intergenic |
| GAATCTTCTCTTGATCATAT+CGG | 0.481992 | 7.2:+74532117 | None:intergenic |
| TGGTGTAGGCAGTTGTAAAT+CGG | 0.482288 | 7.2:+74532370 | None:intergenic |
| GTTGTAAATCGGTTTCAGCC+GGG | 0.482810 | 7.2:+74532381 | None:intergenic |
| CTCCAGAACCAAAGCCAAGA+TGG | 0.487752 | 7.2:-74532796 | MS.gene97535:CDS |
| GCTCGATGTTACAATTTCAT+CGG | 0.498060 | 7.2:+74532502 | None:intergenic |
| AGTTGTAAATCGGTTTCAGC+CGG | 0.500596 | 7.2:+74532380 | None:intergenic |
| CTACACCAAAATTAAGTTGT+GGG | 0.504292 | 7.2:+74532054 | None:intergenic |
| CCAATGGTAGTCGGAGGAAG+AGG | 0.504535 | 7.2:+74531990 | None:intergenic |
| ATTCCGTTGGTTGGACGCAT+TGG | 0.507387 | 7.2:+74533705 | None:intergenic |
| TGTTACAATTTCATCGGGAG+AGG | 0.514335 | 7.2:+74532508 | None:intergenic |
| CACCATCCCATCATTAGCAT+TGG | 0.520729 | 7.2:+74532466 | None:intergenic |
| ATCATATCGGTCATCGATTG+AGG | 0.529178 | 7.2:+74532130 | None:intergenic |
| TTGAAACCAGTAAAAGACAT+TGG | 0.529718 | 7.2:+74532649 | None:intergenic |
| CATTGATATGATTCTTCACA+GGG | 0.534421 | 7.2:+74532333 | None:intergenic |
| TGAGGCCTTGAGAATTCCGT+TGG | 0.536803 | 7.2:+74533692 | None:intergenic |
| AGGTAAGGGTTGAACCATTG+AGG | 0.538283 | 7.2:+74532223 | None:intergenic |
| AAAATGTACGGTGATTACTA+AGG | 0.540588 | 7.2:-74531498 | MS.gene97535:CDS |
| AGAAGATGATGACGATGAGT+TGG | 0.545042 | 7.2:+74532547 | None:intergenic |
| GAAGATGATGACGATGAGTT+GGG | 0.545565 | 7.2:+74532548 | None:intergenic |
| GCTAGGCCAATGTTTGTTCG+AGG | 0.550853 | 7.2:+74533744 | None:intergenic |
| TTGTAAATCGGTTTCAGCCG+GGG | 0.553375 | 7.2:+74532382 | None:intergenic |
| TGTTAATGGAAGCTCCTCAA+TGG | 0.556181 | 7.2:-74532237 | MS.gene97535:CDS |
| ATTATTGATCATCAACATCA+AGG | 0.556197 | 7.2:-74531942 | MS.gene97535:intron |
| TTACAAGAGTTTGGTCAAGT+TGG | 0.556243 | 7.2:-74532677 | MS.gene97535:CDS |
| TCGAGAATGCGAATTTGCTG+TGG | 0.562311 | 7.2:+74532764 | None:intergenic |
| CCCCACATCAACCATGAATG+AGG | 0.565657 | 7.2:+74531472 | None:intergenic |
| ACCATGGTGGAGCGAATCGA+GGG | 0.568055 | 7.2:+74531361 | None:intergenic |
| GTAGACTTCTTGAACATGCT+AGG | 0.571860 | 7.2:+74533727 | None:intergenic |
| AAACCTATGTTGTGTTGTCA+TGG | 0.572459 | 7.2:+74532292 | None:intergenic |
| TGGCTTCCTCGAACAAACAT+TGG | 0.573120 | 7.2:-74533750 | MS.gene97535:CDS |
| TGATGATCAATAATGGGGAA+TGG | 0.576018 | 7.2:+74531951 | None:intergenic |
| TTTGTTTGCTTCTAGACTTG+CGG | 0.582777 | 7.2:+74532624 | None:intergenic |
| GCTACACCAAAATTAAGTTG+TGG | 0.586720 | 7.2:+74532053 | None:intergenic |
| TCGAAGCCATCTTCAACTCA+GGG | 0.588916 | 7.2:-74532745 | MS.gene97535:CDS |
| CACCATGGTGGAGCGAATCG+AGG | 0.590019 | 7.2:+74531360 | None:intergenic |
| GAGGGTAACACCCCATTCAT+CGG | 0.593009 | 7.2:+74531379 | None:intergenic |
| CTCCAATGCTAATGATGGGA+TGG | 0.594670 | 7.2:-74532468 | MS.gene97535:CDS |
| AACAGCAACAGGTGCACCAA+TGG | 0.597910 | 7.2:+74531974 | None:intergenic |
| TCCAACCAACGGAATTCTCA+AGG | 0.602756 | 7.2:-74533697 | MS.gene97535:CDS |
| GAGAACTGCTCGATCTCCAA+AGG | 0.604797 | 7.2:+74531430 | None:intergenic |
| CTACCAATGCGTCCAACCAA+CGG | 0.608541 | 7.2:-74533708 | MS.gene97535:CDS |
| ATGCCATGACAACACAACAT+AGG | 0.609484 | 7.2:-74532295 | MS.gene97535:CDS |
| TGTGAAAATAAGCATCAACT+TGG | 0.611249 | 7.2:+74532405 | None:intergenic |
| GATATGATTCTTCACAGGGA+AGG | 0.624939 | 7.2:+74532337 | None:intergenic |
| AGCCATCTTCAACTCAGGGA+TGG | 0.625963 | 7.2:-74532741 | MS.gene97535:CDS |
| GATGGTGAATCCACCAAGGG+AGG | 0.626180 | 7.2:-74532723 | MS.gene97535:CDS |
| TGATCAAGAGAAGATTCAAG+AGG | 0.626315 | 7.2:-74532111 | MS.gene97535:CDS |
| CAGTTAAGAGAGATGAGTTG+AGG | 0.637407 | 7.2:+74533674 | None:intergenic |
| GATTCTCCAATGCTAATGAT+GGG | 0.642205 | 7.2:-74532472 | MS.gene97535:CDS |
| ACAGGTGCACCAATGGTAGT+CGG | 0.643930 | 7.2:+74531981 | None:intergenic |
| ATTTGGCGTGGAAGATGGAG+CGG | 0.645210 | 7.2:-74531522 | MS.gene97535:CDS |
| ATGATCTCATGATTAACTAG+AGG | 0.649834 | 7.2:+74532182 | None:intergenic |
| GGTAATAAGTAGCACCATGG+TGG | 0.650858 | 7.2:+74531348 | None:intergenic |
| CAATGCTAATGATGGGATGG+TGG | 0.652306 | 7.2:-74532465 | MS.gene97535:CDS |
| GGTACATCAACATTCTGTTG+AGG | 0.653303 | 7.2:+74532203 | None:intergenic |
| CCTCATTCATGGTTGATGTG+GGG | 0.657797 | 7.2:-74531472 | MS.gene97535:CDS |
| ACCCTCGATTCGCTCCACCA+TGG | 0.662822 | 7.2:-74531362 | MS.gene97535:CDS |
| GATGATGACGATGAGTTGGG+TGG | 0.676087 | 7.2:+74532551 | None:intergenic |
| AGGGATGGTGAATCCACCAA+GGG | 0.676331 | 7.2:-74532726 | MS.gene97535:CDS |
| CCAGTTCTAACCGATGAATG+GGG | 0.682383 | 7.2:-74531389 | MS.gene97535:CDS |
| GATGTTGATGATCAATAATG+GGG | 0.687158 | 7.2:+74531946 | None:intergenic |
| GGTTAGAACTGGAGTACCAG+AGG | 0.692890 | 7.2:+74531400 | None:intergenic |
| GTGTTTGTCAGGATTTGGCG+TGG | 0.696978 | 7.2:-74531534 | MS.gene97535:intron |
| CCAGGTAATAAGTAGCACCA+TGG | 0.700447 | 7.2:+74531345 | None:intergenic |
| GGTGCACCAATGGTAGTCGG+AGG | 0.701339 | 7.2:+74531984 | None:intergenic |
| CAGGGATGGTGAATCCACCA+AGG | 0.701383 | 7.2:-74532727 | MS.gene97535:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAATAATAAGTAG+AGG | + | chr7.2:74531425-74531444 | None:intergenic | 10.0% |
| !! | TAATAATAATAATAAGTAGA+GGG | + | chr7.2:74531424-74531443 | None:intergenic | 10.0% |
| !!! | TAATATTTCTATAAAACAAT+TGG | + | chr7.2:74531949-74531968 | None:intergenic | 10.0% |
| !! | ATAAACTCAATTATAATACT+TGG | + | chr7.2:74531595-74531614 | None:intergenic | 15.0% |
| !! | CTTATAACAAATATTGTTTA+GGG | - | chr7.2:74532220-74532239 | MS.gene97535:CDS | 15.0% |
| !! | TATAGAAATATCATAATACT+CGG | - | chr7.2:74532130-74532149 | MS.gene97535:CDS | 15.0% |
| !! | TTATAACAAATATTGTTTAG+GGG | - | chr7.2:74532221-74532240 | MS.gene97535:CDS | 15.0% |
| !!! | ATTTTGAAGTTTAGATTTTT+AGG | - | chr7.2:74531656-74531675 | MS.gene97535:intron | 15.0% |
| !!! | TTTTGAAGTTTAGATTTTTA+GGG | - | chr7.2:74531657-74531676 | MS.gene97535:intron | 15.0% |
| !! | ATTGGATAAATTATCTTCAT+CGG | + | chr7.2:74531931-74531950 | None:intergenic | 20.0% |
| !! | GCTTATAACAAATATTGTTT+AGG | - | chr7.2:74532219-74532238 | MS.gene97535:CDS | 20.0% |
| !! | TATAACAAATATTGTTTAGG+GGG | - | chr7.2:74532222-74532241 | MS.gene97535:CDS | 20.0% |
| !! | TTAAAATATAATTGCTCGAT+CGG | + | chr7.2:74531748-74531767 | None:intergenic | 20.0% |
| !!! | AAACTTAGTTTGAATTTAGT+TGG | - | chr7.2:74533219-74533238 | MS.gene97535:intron | 20.0% |
| !!! | AATTTTAAATCGATTCGTTT+AGG | + | chr7.2:74531639-74531658 | None:intergenic | 20.0% |
| !!! | TGTAAATTTAGCATTTTGAT+TGG | - | chr7.2:74532197-74532216 | MS.gene97535:CDS | 20.0% |
| !!! | TTTCGTTTTATTATATTCCA+CGG | - | chr7.2:74533423-74533442 | MS.gene97535:intron | 20.0% |
| ! | AAATTTGATCTATACTCGTT+CGG | - | chr7.2:74531683-74531702 | MS.gene97535:intron | 25.0% |
| ! | ATTATTGATCATCAACATCA+AGG | - | chr7.2:74533116-74533135 | MS.gene97535:intron | 25.0% |
| ! | GTAAACTACAATATGAACTT+TGG | + | chr7.2:74531979-74531998 | None:intergenic | 25.0% |
| ! | TAAACAAAGCAGATGTTATA+AGG | + | chr7.2:74533750-74533769 | None:intergenic | 25.0% |
| ! | TAATAAAACGAAATCATACC+TGG | + | chr7.2:74533416-74533435 | None:intergenic | 25.0% |
| ! | TGAGTTTATAGTCATTGAAT+TGG | + | chr7.2:74531509-74531528 | None:intergenic | 25.0% |
| !! | ATACCTGGAACTTTAAATTT+TGG | + | chr7.2:74533401-74533420 | None:intergenic | 25.0% |
| !! | TACCTGGAACTTTAAATTTT+GGG | + | chr7.2:74533400-74533419 | None:intergenic | 25.0% |
| !!! | ATGAACTATAGAAGTGTTAA+TGG | - | chr7.2:74532807-74532826 | MS.gene97535:CDS | 25.0% |
| !!! | TGATGTTGATGATCAATAAT+GGG | + | chr7.2:74533116-74533135 | None:intergenic | 25.0% |
| !!! | TTGATGTTGATGATCAATAA+TGG | + | chr7.2:74533117-74533136 | None:intergenic | 25.0% |
| !!! | TTGTTTTAATGTAGACACTA+TGG | - | chr7.2:74531887-74531906 | MS.gene97535:intron | 25.0% |
| AAAATGTACGGTGATTACTA+AGG | - | chr7.2:74533560-74533579 | MS.gene97535:intron | 30.0% | |
| ATGATCTCATGATTAACTAG+AGG | + | chr7.2:74532879-74532898 | None:intergenic | 30.0% | |
| ATTGTAACATCGAGCAATAT+TGG | - | chr7.2:74532564-74532583 | MS.gene97535:CDS | 30.0% | |
| CAAAACGACTTAAATTGATG+TGG | - | chr7.2:74531539-74531558 | MS.gene97535:intron | 30.0% | |
| CATAGGTTTAATCACTTATC+TGG | - | chr7.2:74532780-74532799 | MS.gene97535:CDS | 30.0% | |
| CATTGATATGATTCTTCACA+GGG | + | chr7.2:74532728-74532747 | None:intergenic | 30.0% | |
| GAATCTTCTCTTGATCATAT+CGG | + | chr7.2:74532944-74532963 | None:intergenic | 30.0% | |
| TCATTGATATGATTCTTCAC+AGG | + | chr7.2:74532729-74532748 | None:intergenic | 30.0% | |
| TGTGAAAATAAGCATCAACT+TGG | + | chr7.2:74532656-74532675 | None:intergenic | 30.0% | |
| TTGAAACCAGTAAAAGACAT+TGG | + | chr7.2:74532412-74532431 | None:intergenic | 30.0% | |
| ! | AATAAGCATCAACTTGGTTT+TGG | + | chr7.2:74532650-74532669 | None:intergenic | 30.0% |
| ! | CTACACCAAAATTAAGTTGT+GGG | + | chr7.2:74533007-74533026 | None:intergenic | 30.0% |
| !! | GATGTTGATGATCAATAATG+GGG | + | chr7.2:74533115-74533134 | None:intergenic | 30.0% |
| !!! | GTTTAGGTTTTTTCCATGTT+GGG | + | chr7.2:74531623-74531642 | None:intergenic | 30.0% |
| !!! | TTTAGGTTTTTTCCATGTTG+GGG | + | chr7.2:74531622-74531641 | None:intergenic | 30.0% |
| !!! | TTTTTGTTGTTTTATCCGTC+TGG | + | chr7.2:74533321-74533340 | None:intergenic | 30.0% |
| AAACCTATGTTGTGTTGTCA+TGG | + | chr7.2:74532769-74532788 | None:intergenic | 35.0% | |
| AAATATTGTTTAGGGGGAGA+TGG | - | chr7.2:74532228-74532247 | MS.gene97535:CDS | 35.0% | |
| ATCAACATTCTGTTGAGGTA+AGG | + | chr7.2:74532853-74532872 | None:intergenic | 35.0% | |
| CATGAGATCATCATGAACTA+TGG | - | chr7.2:74532888-74532907 | MS.gene97535:intron | 35.0% | |
| CGTGAACAATTACAAGAGTT+TGG | - | chr7.2:74532372-74532391 | MS.gene97535:CDS | 35.0% | |
| CTCGATGTTACAATTTCATC+GGG | + | chr7.2:74532558-74532577 | None:intergenic | 35.0% | |
| GATTCTCCAATGCTAATGAT+GGG | - | chr7.2:74532586-74532605 | MS.gene97535:CDS | 35.0% | |
| GCTCGATGTTACAATTTCAT+CGG | + | chr7.2:74532559-74532578 | None:intergenic | 35.0% | |
| TATAAGGAAAAATACGCACC+AGG | + | chr7.2:74533734-74533753 | None:intergenic | 35.0% | |
| TCAACATTCTGTTGAGGTAA+GGG | + | chr7.2:74532852-74532871 | None:intergenic | 35.0% | |
| TGATCAAGAGAAGATTCAAG+AGG | - | chr7.2:74532947-74532966 | MS.gene97535:intron | 35.0% | |
| TTACAAGAGTTTGGTCAAGT+TGG | - | chr7.2:74532381-74532400 | MS.gene97535:CDS | 35.0% | |
| TTGTTTATATAACCCCGACA+TGG | + | chr7.2:74531571-74531590 | None:intergenic | 35.0% | |
| TTTGTGTGTTTGTCAGGATT+TGG | - | chr7.2:74533519-74533538 | MS.gene97535:intron | 35.0% | |
| TTTGTTTGCTTCTAGACTTG+CGG | + | chr7.2:74532437-74532456 | None:intergenic | 35.0% | |
| ! | CAAGACCCACAACTTAATTT+TGG | - | chr7.2:74532999-74533018 | MS.gene97535:intron | 35.0% |
| ! | CACCCAAAATTTAAAGTTCC+AGG | - | chr7.2:74533395-74533414 | MS.gene97535:intron | 35.0% |
| ! | GCTACACCAAAATTAAGTTG+TGG | + | chr7.2:74533008-74533027 | None:intergenic | 35.0% |
| ! | TGATGATCAATAATGGGGAA+TGG | + | chr7.2:74533110-74533129 | None:intergenic | 35.0% |
| !! | TTATCTTCATCGGTTTGCTT+TGG | + | chr7.2:74531921-74531940 | None:intergenic | 35.0% |
| !!! | ATCAACTTGGTTTTGGTTCA+CGG | + | chr7.2:74532643-74532662 | None:intergenic | 35.0% |
| !!! | CGTTTAGGTTTTTTCCATGT+TGG | + | chr7.2:74531624-74531643 | None:intergenic | 35.0% |
| !!! | TGATGTGGTTTTTTCCATGT+CGG | - | chr7.2:74531554-74531573 | MS.gene97535:intron | 35.0% |
| AAAGGATGCACGAACGTTAA+AGG | + | chr7.2:74533613-74533632 | None:intergenic | 40.0% | |
| AAGGATGCACGAACGTTAAA+GGG | + | chr7.2:74533612-74533631 | None:intergenic | 40.0% | |
| AGATGGAGCGGAAAAATGTA+CGG | - | chr7.2:74533548-74533567 | MS.gene97535:intron | 40.0% | |
| ATCTTCGTAATTTCCTCCCT+TGG | + | chr7.2:74532351-74532370 | None:intergenic | 40.0% | |
| ATGCCATGACAACACAACAT+AGG | - | chr7.2:74532763-74532782 | MS.gene97535:CDS | 40.0% | |
| CAGTTAAGAGAGATGAGTTG+AGG | + | chr7.2:74531387-74531406 | None:intergenic | 40.0% | |
| CTCAACTCATCTCTCTTAAC+TGG | - | chr7.2:74531385-74531404 | MS.gene97535:CDS | 40.0% | |
| GAGTTTATATGACCCCAACA+TGG | - | chr7.2:74531607-74531626 | MS.gene97535:intron | 40.0% | |
| GATATGATTCTTCACAGGGA+AGG | + | chr7.2:74532724-74532743 | None:intergenic | 40.0% | |
| GGATTCTCCAATGCTAATGA+TGG | - | chr7.2:74532585-74532604 | MS.gene97535:CDS | 40.0% | |
| GGTACATCAACATTCTGTTG+AGG | + | chr7.2:74532858-74532877 | None:intergenic | 40.0% | |
| GTAGACTTCTTGAACATGCT+AGG | + | chr7.2:74531334-74531353 | None:intergenic | 40.0% | |
| GTGTTTCTCGTTTCTTGTTG+TGG | + | chr7.2:74532473-74532492 | None:intergenic | 40.0% | |
| TCATCGTCATCATCTTCTTC+TGG | - | chr7.2:74532516-74532535 | MS.gene97535:CDS | 40.0% | |
| TGGTGTAGGCAGTTGTAAAT+CGG | + | chr7.2:74532691-74532710 | None:intergenic | 40.0% | |
| TGTTAATGGAAGCTCCTCAA+TGG | - | chr7.2:74532821-74532840 | MS.gene97535:intron | 40.0% | |
| TGTTACAATTTCATCGGGAG+AGG | + | chr7.2:74532553-74532572 | None:intergenic | 40.0% | |
| TGTTGTGTTGTCATGGCATT+AGG | + | chr7.2:74532762-74532781 | None:intergenic | 40.0% | |
| TTCACAGGGAAGGAGAAAAA+TGG | + | chr7.2:74532714-74532733 | None:intergenic | 40.0% | |
| TTCATCTCTCACATGCAACT+TGG | + | chr7.2:74533493-74533512 | None:intergenic | 40.0% | |
| TTTAACGTTCGTGCATCCTT+TGG | - | chr7.2:74533612-74533631 | MS.gene97535:intron | 40.0% | |
| ! | AAGGAGAAAAATGGTGGTGT+AGG | + | chr7.2:74532705-74532724 | None:intergenic | 40.0% |
| ! | AATTAAGTTGTGGGTCTTGC+TGG | + | chr7.2:74532998-74533017 | None:intergenic | 40.0% |
| ! | AGAAGATGATGACGATGAGT+TGG | + | chr7.2:74532514-74532533 | None:intergenic | 40.0% |
| ! | AGTTGTAAATCGGTTTCAGC+CGG | + | chr7.2:74532681-74532700 | None:intergenic | 40.0% |
| ! | ATCATATCGGTCATCGATTG+AGG | + | chr7.2:74532931-74532950 | None:intergenic | 40.0% |
| ! | GAAGATGATGACGATGAGTT+GGG | + | chr7.2:74532513-74532532 | None:intergenic | 40.0% |
| ! | GTGATGCCAATGTCTTTTAC+TGG | - | chr7.2:74532403-74532422 | MS.gene97535:CDS | 40.0% |
| ! | GTGTCTTTTGTGTGTTTGTC+AGG | - | chr7.2:74533513-74533532 | MS.gene97535:intron | 40.0% |
| ! | TCCAGTTCTAACCGATGAAT+GGG | - | chr7.2:74533668-74533687 | MS.gene97535:CDS | 40.0% |
| ! | TCGCATTTGGCTTAATCAGA+AGG | + | chr7.2:74533274-74533293 | None:intergenic | 40.0% |
| !! | TGATGCTTATTTTCACACCC+CGG | - | chr7.2:74532659-74532678 | MS.gene97535:CDS | 40.0% |
| !! | TTATCCGTCTGGTTCTGAAA+AGG | + | chr7.2:74533310-74533329 | None:intergenic | 40.0% |
| !!! | ATGTGGTTTTTTCCATGTCG+GGG | - | chr7.2:74531556-74531575 | MS.gene97535:intron | 40.0% |
| !!! | GATGTGGTTTTTTCCATGTC+GGG | - | chr7.2:74531555-74531574 | MS.gene97535:intron | 40.0% |
| ACAGGGAAGGAGAAAAATGG+TGG | + | chr7.2:74532711-74532730 | None:intergenic | 45.0% | |
| AGGTAAGGGTTGAACCATTG+AGG | + | chr7.2:74532838-74532857 | None:intergenic | 45.0% | |
| CACCATCCCATCATTAGCAT+TGG | + | chr7.2:74532595-74532614 | None:intergenic | 45.0% | |
| CCAGGTAATAAGTAGCACCA+TGG | + | chr7.2:74533716-74533735 | None:intergenic | 45.0% | |
| GGTAATAAGTAGCACCATGG+TGG | + | chr7.2:74533713-74533732 | None:intergenic | 45.0% | |
| TACTAAGGACGCCTCATTCA+TGG | - | chr7.2:74533575-74533594 | MS.gene97535:intron | 45.0% | |
| TCCAACCAACGGAATTCTCA+AGG | - | chr7.2:74531361-74531380 | MS.gene97535:CDS | 45.0% | |
| TCGAAGCCATCTTCAACTCA+GGG | - | chr7.2:74532313-74532332 | MS.gene97535:CDS | 45.0% | |
| TGGCTTCCTCGAACAAACAT+TGG | - | chr7.2:74531308-74531327 | MS.gene97535:CDS | 45.0% | |
| TTCGTAATTTCCTCCCTTGG+TGG | + | chr7.2:74532348-74532367 | None:intergenic | 45.0% | |
| ! | CAATGCTAATGATGGGATGG+TGG | - | chr7.2:74532593-74532612 | MS.gene97535:CDS | 45.0% |
| ! | CCAGTTCTAACCGATGAATG+GGG | - | chr7.2:74533669-74533688 | MS.gene97535:CDS | 45.0% |
| ! | CCTCATTCATGGTTGATGTG+GGG | - | chr7.2:74533586-74533605 | MS.gene97535:intron | 45.0% |
| ! | CTCCAATGCTAATGATGGGA+TGG | - | chr7.2:74532590-74532609 | MS.gene97535:CDS | 45.0% |
| ! | CTCCAGTTCTAACCGATGAA+TGG | - | chr7.2:74533667-74533686 | MS.gene97535:CDS | 45.0% |
| ! | GCCTCATTCATGGTTGATGT+GGG | - | chr7.2:74533585-74533604 | MS.gene97535:intron | 45.0% |
| ! | GGTGTTTTCTAATTCACCCG+TGG | - | chr7.2:74532614-74532633 | MS.gene97535:CDS | 45.0% |
| ! | GTTGTAAATCGGTTTCAGCC+GGG | + | chr7.2:74532680-74532699 | None:intergenic | 45.0% |
| ! | TTGTAAATCGGTTTCAGCCG+GGG | + | chr7.2:74532679-74532698 | None:intergenic | 45.0% |
| ! | TTTGGGTTCCATCTTGGCTT+TGG | + | chr7.2:74532273-74532292 | None:intergenic | 45.0% |
| !! | ATGCGAATTTGCTGTGGCTT+TGG | + | chr7.2:74532291-74532310 | None:intergenic | 45.0% |
| !! | CCATGGTGCTACTTATTACC+TGG | - | chr7.2:74533713-74533732 | MS.gene97535:CDS | 45.0% |
| !! | CGGCTTGGTAATTTCGCATT+TGG | + | chr7.2:74533287-74533306 | None:intergenic | 45.0% |
| !! | TCGAGAATGCGAATTTGCTG+TGG | + | chr7.2:74532297-74532316 | None:intergenic | 45.0% |
| !! | TGCGAATTTGCTGTGGCTTT+GGG | + | chr7.2:74532290-74532309 | None:intergenic | 45.0% |
| !! | TTCCATCTTGGCTTTGGTTC+TGG | + | chr7.2:74532267-74532286 | None:intergenic | 45.0% |
| !!! | ATATATTTGTAATTTTTTTA+AGG | + | chr7.2:74533370-74533389 | None:intergenic | 5.0% |
| !!! | TATATTTGTAATTTTTTTAA+GGG | + | chr7.2:74533369-74533388 | None:intergenic | 5.0% |
| AACAGCAACAGGTGCACCAA+TGG | + | chr7.2:74533087-74533106 | None:intergenic | 50.0% | |
| ACAGGTGCACCAATGGTAGT+CGG | + | chr7.2:74533080-74533099 | None:intergenic | 50.0% | |
| AGCCATCTTCAACTCAGGGA+TGG | - | chr7.2:74532317-74532336 | MS.gene97535:CDS | 50.0% | |
| AGGGATGGTGAATCCACCAA+GGG | - | chr7.2:74532332-74532351 | MS.gene97535:CDS | 50.0% | |
| ATGGGGAATGGAACAGCAAC+AGG | + | chr7.2:74533098-74533117 | None:intergenic | 50.0% | |
| ATTTGGCGTGGAAGATGGAG+CGG | - | chr7.2:74533536-74533555 | MS.gene97535:intron | 50.0% | |
| CCCCACATCAACCATGAATG+AGG | + | chr7.2:74533589-74533608 | None:intergenic | 50.0% | |
| CTACCAATGCGTCCAACCAA+CGG | - | chr7.2:74531350-74531369 | MS.gene97535:CDS | 50.0% | |
| CTCCAGAACCAAAGCCAAGA+TGG | - | chr7.2:74532262-74532281 | MS.gene97535:CDS | 50.0% | |
| CTCGAAGCCATCTTCAACTC+AGG | - | chr7.2:74532312-74532331 | MS.gene97535:CDS | 50.0% | |
| GAGAACTGCTCGATCTCCAA+AGG | + | chr7.2:74533631-74533650 | None:intergenic | 50.0% | |
| GAGGGTAACACCCCATTCAT+CGG | + | chr7.2:74533682-74533701 | None:intergenic | 50.0% | |
| GCAGTTCTCTTTGACTCCTC+TGG | - | chr7.2:74533642-74533661 | MS.gene97535:CDS | 50.0% | |
| GCCTTGAGAATTCCGTTGGT+TGG | + | chr7.2:74531365-74531384 | None:intergenic | 50.0% | |
| GCTAGGCCAATGTTTGTTCG+AGG | + | chr7.2:74531317-74531336 | None:intergenic | 50.0% | |
| GTGTTTGTCAGGATTTGGCG+TGG | - | chr7.2:74533524-74533543 | MS.gene97535:intron | 50.0% | |
| TCAGGATTTGGCGTGGAAGA+TGG | - | chr7.2:74533531-74533550 | MS.gene97535:intron | 50.0% | |
| TGAGGCCTTGAGAATTCCGT+TGG | + | chr7.2:74531369-74531388 | None:intergenic | 50.0% | |
| ! | ATTCCGTTGGTTGGACGCAT+TGG | + | chr7.2:74531356-74531375 | None:intergenic | 50.0% |
| ! | CACCATCCCTGAGTTGAAGA+TGG | + | chr7.2:74532322-74532341 | None:intergenic | 50.0% |
| ! | CCCCATTCATCGGTTAGAAC+TGG | + | chr7.2:74533672-74533691 | None:intergenic | 50.0% |
| ! | CGCCTCATTCATGGTTGATG+TGG | - | chr7.2:74533584-74533603 | MS.gene97535:intron | 50.0% |
| ! | GATGATGACGATGAGTTGGG+TGG | + | chr7.2:74532510-74532529 | None:intergenic | 50.0% |
| ! | GGTTAGAACTGGAGTACCAG+AGG | + | chr7.2:74533661-74533680 | None:intergenic | 50.0% |
| !! | TCCGTCTGGTTCTGAAAAGG+CGG | + | chr7.2:74533307-74533326 | None:intergenic | 50.0% |
| !! | TGTGGCTTTGGGTTCCATCT+TGG | + | chr7.2:74532279-74532298 | None:intergenic | 50.0% |
| !!! | GTTTTGGTTCACGGACACCA+CGG | + | chr7.2:74532634-74532653 | None:intergenic | 50.0% |
| !!! | TTTTGGTTCACGGACACCAC+GGG | + | chr7.2:74532633-74532652 | None:intergenic | 50.0% |
| CAGGGATGGTGAATCCACCA+AGG | - | chr7.2:74532331-74532350 | MS.gene97535:CDS | 55.0% | |
| CCAATGGTAGTCGGAGGAAG+AGG | + | chr7.2:74533071-74533090 | None:intergenic | 55.0% | |
| CCTCTTCCTCCGACTACCAT+TGG | - | chr7.2:74533068-74533087 | MS.gene97535:intron | 55.0% | |
| GATGGTGAATCCACCAAGGG+AGG | - | chr7.2:74532335-74532354 | MS.gene97535:CDS | 55.0% | |
| TTGTGCATTGCACACGTCCG+TGG | + | chr7.2:74533443-74533462 | None:intergenic | 55.0% | |
| ! | ACCATGGTGGAGCGAATCGA+GGG | + | chr7.2:74533700-74533719 | None:intergenic | 55.0% |
| ! | GCCGCCTTTTCAGAACCAGA+CGG | - | chr7.2:74533303-74533322 | MS.gene97535:intron | 55.0% |
| !! | CTGGTTCTGAAAAGGCGGCT+TGG | + | chr7.2:74533302-74533321 | None:intergenic | 55.0% |
| GGTGCACCAATGGTAGTCGG+AGG | + | chr7.2:74533077-74533096 | None:intergenic | 60.0% | |
| ! | ACCCTCGATTCGCTCCACCA+TGG | - | chr7.2:74533696-74533715 | MS.gene97535:CDS | 60.0% |
| ! | CACCATGGTGGAGCGAATCG+AGG | + | chr7.2:74533701-74533720 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 74531307 | 74533773 | 74531307 | ID=MS.gene97535 |
| chr7.2 | mRNA | 74531307 | 74533773 | 74531307 | ID=MS.gene97535.t1;Parent=MS.gene97535 |
| chr7.2 | exon | 74533620 | 74533773 | 74533620 | ID=MS.gene97535.t1.exon1;Parent=MS.gene97535.t1 |
| chr7.2 | CDS | 74533620 | 74533773 | 74533620 | ID=cds.MS.gene97535.t1;Parent=MS.gene97535.t1 |
| chr7.2 | exon | 74531943 | 74532839 | 74531943 | ID=MS.gene97535.t1.exon2;Parent=MS.gene97535.t1 |
| chr7.2 | CDS | 74531943 | 74532839 | 74531943 | ID=cds.MS.gene97535.t1;Parent=MS.gene97535.t1 |
| chr7.2 | exon | 74531307 | 74531545 | 74531307 | ID=MS.gene97535.t1.exon3;Parent=MS.gene97535.t1 |
| chr7.2 | CDS | 74531307 | 74531545 | 74531307 | ID=cds.MS.gene97535.t1;Parent=MS.gene97535.t1 |
| Gene Sequence |
| Protein sequence |
