AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene97634

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97634.t1 MTR_1g047060 48.421 95 44 1 112 206 3 92 4.28e-22 87.4
MS.gene97634.t1 MTR_4g094302 30.270 185 98 8 4 166 11 186 6.96e-16 73.9
MS.gene97634.t1 MTR_2g080010 28.866 194 99 6 4 172 15 194 2.48e-15 74.7
MS.gene97634.t1 MTR_5g012080 32.903 155 87 6 4 146 7 156 4.15e-15 73.9
MS.gene97634.t1 MTR_2g093810 32.704 159 81 5 5 145 15 165 4.67e-15 73.6
MS.gene97634.t1 MTR_4g089135 34.307 137 75 4 4 133 15 143 9.72e-15 72.8
MS.gene97634.t1 MTR_8g059170 31.250 160 82 7 4 146 14 162 1.79e-14 72.0
MS.gene97634.t1 MTR_7g105170 28.261 184 107 7 1 162 1 181 1.92e-14 71.2
MS.gene97634.t1 MTR_4g081870 30.435 161 84 7 4 146 9 159 1.99e-14 71.2
MS.gene97634.t1 MTR_6g477900 30.380 158 86 7 4 146 6 154 2.12e-14 70.9
MS.gene97634.t1 MTR_2g079990 31.013 158 83 7 4 146 16 162 3.08e-14 71.6
MS.gene97634.t1 MTR_4g101680 31.818 154 88 5 4 146 7 154 5.22e-14 70.9
MS.gene97634.t1 MTR_3g088110 30.435 161 84 6 4 147 7 156 2.74e-13 68.2
MS.gene97634.t1 MTR_8g023860 31.410 156 90 7 1 146 9 157 2.92e-13 68.9
MS.gene97634.t1 MTR_1g008740 31.481 162 93 6 2 151 25 180 5.57e-13 67.8
MS.gene97634.t1 MTR_1g008740 31.481 162 93 6 2 151 11 166 7.49e-13 67.4
MS.gene97634.t1 MTR_8g023900 29.319 191 110 9 7 184 196 374 1.10e-12 67.4
MS.gene97634.t1 MTR_8g023900 30.128 156 90 7 2 145 10 158 6.73e-12 65.1
MS.gene97634.t1 MTR_8g023930 31.373 153 90 7 2 145 22 168 1.67e-12 66.6
MS.gene97634.t1 MTR_2g086880 29.730 148 86 7 6 145 20 157 1.78e-12 67.0
MS.gene97634.t1 MTR_2g079990 32.857 140 75 6 4 135 16 144 1.82e-12 66.6
MS.gene97634.t1 MTR_2g086880 29.139 151 83 7 6 145 20 157 2.54e-12 66.2
MS.gene97634.t1 MTR_2g064090 28.662 157 91 7 4 146 6 155 4.16e-12 65.1
MS.gene97634.t1 MTR_8g093790 27.778 180 96 7 4 174 10 164 5.34e-12 63.2
MS.gene97634.t1 MTR_8g023840 27.895 190 116 8 4 182 11 190 8.49e-12 64.7
MS.gene97634.t1 MTR_3g109340 30.625 160 92 7 2 149 20 172 9.27e-12 64.3
MS.gene97634.t1 MTR_8g467490 27.976 168 90 7 2 146 12 171 1.78e-11 63.5
MS.gene97634.t1 MTR_4g108760 33.540 161 88 8 1 149 15 168 1.91e-11 63.5
MS.gene97634.t1 MTR_4g035590 31.373 153 89 7 4 146 8 154 3.60e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97634.t1 AT5G62380 34.615 156 81 7 4 146 7 154 2.69e-15 74.7
MS.gene97634.t1 AT5G62380 34.615 156 81 7 4 146 7 154 2.69e-15 74.7
MS.gene97634.t1 AT4G27410 29.448 163 89 7 4 151 14 165 4.04e-15 73.6
MS.gene97634.t1 AT1G52890 31.677 161 78 7 4 146 14 160 1.12e-14 72.4
MS.gene97634.t1 AT3G15500 32.075 159 80 7 4 146 14 160 2.04e-14 71.6
MS.gene97634.t1 AT2G27300 27.700 213 123 9 6 200 16 215 4.12e-14 71.2
MS.gene97634.t1 AT1G01720 30.864 162 83 6 4 147 7 157 1.33e-13 69.3
MS.gene97634.t1 AT4G27410 27.222 180 88 8 4 151 14 182 1.58e-13 69.3
MS.gene97634.t1 AT5G08790 28.571 231 127 9 4 211 7 222 2.40e-13 68.6
MS.gene97634.t1 AT3G44290 28.188 149 87 7 6 145 16 153 6.69e-13 66.2
MS.gene97634.t1 AT3G44290 28.859 149 86 8 6 145 16 153 1.05e-12 67.0
MS.gene97634.t1 AT5G61430 33.742 163 89 7 1 151 14 169 1.32e-12 66.6
MS.gene97634.t1 AT5G17260 27.848 158 91 7 4 146 6 155 1.99e-12 66.6
MS.gene97634.t1 AT1G77450 29.670 182 95 7 5 164 11 181 1.99e-12 65.5
MS.gene97634.t1 AT1G65910 29.012 162 89 6 4 149 6 157 2.30e-12 66.6
MS.gene97634.t1 AT5G39820 34.058 138 76 5 2 132 18 147 3.47e-12 65.5
MS.gene97634.t1 AT5G13180 29.801 151 92 5 4 146 14 158 5.68e-12 64.3
MS.gene97634.t1 AT5G63790 30.539 167 90 7 4 153 50 207 1.33e-11 63.5
MS.gene97634.t1 AT5G63790 30.539 167 90 7 4 153 60 217 1.46e-11 63.5
MS.gene97634.t1 AT2G33480 32.468 154 81 7 4 146 15 156 1.75e-11 62.8
MS.gene97634.t1 AT4G10350 30.769 156 89 7 4 146 9 158 1.95e-11 63.2
MS.gene97634.t1 AT5G46590 29.299 157 89 7 4 145 6 155 2.38e-11 62.8
MS.gene97634.t1 AT5G07680 33.129 163 90 7 1 151 15 170 2.74e-11 62.8
MS.gene97634.t1 AT5G07680 33.129 163 90 7 1 151 1 156 3.01e-11 62.8
MS.gene97634.t1 AT1G54330 28.758 153 92 6 4 146 6 151 3.32e-11 62.4

Find 51 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATTGTAAAACTGGATTT+TGG 0.171591 1.1:+40093912 MS.gene97634:CDS
TGGATCTGGACTCTAAATTT+AGG 0.187229 1.1:+40094241 MS.gene97634:CDS
GCAACTTAAGCATGCACTTC+TGG 0.244759 1.1:+40095258 MS.gene97634:CDS
AGCTCCAGTAGTAATGAATT+TGG 0.250625 1.1:-40093951 None:intergenic
CAAGGAACTCAACAACTTAA+TGG 0.264676 1.1:+40094324 MS.gene97634:CDS
CCTTCTCGGCTCATCAGTTT+TGG 0.278275 1.1:-40093891 None:intergenic
AAGGAACTCAACAACTTAAT+GGG 0.310816 1.1:+40094325 MS.gene97634:CDS
CCGAGAAGGCATTGTAAAAC+TGG 0.358344 1.1:+40093905 MS.gene97634:CDS
CCTTGTGTCAGGGAAGAAAA+AGG 0.365714 1.1:-40093849 None:intergenic
CAGCAAAACTCCCTTGTGTC+AGG 0.396056 1.1:-40093860 None:intergenic
ACAGGTTCAGCTCCTTAATC+AGG 0.411998 1.1:-40093790 None:intergenic
GGATCTGGACTCTAAATTTA+GGG 0.412698 1.1:+40094242 MS.gene97634:CDS
AGGTGATGCATCACATTTCA+TGG 0.429555 1.1:+40094380 MS.gene97634:CDS
GTAATTCAAACGGATCATAT+TGG 0.442480 1.1:-40093814 None:intergenic
CTGCTCTAGAGGGATGGATC+TGG 0.463977 1.1:+40094227 MS.gene97634:CDS
GCTGCCAAATTCATTACTAC+TGG 0.474236 1.1:+40093947 MS.gene97634:CDS
CGTTTGAATTACATCTTGCT+CGG 0.486403 1.1:+40093825 MS.gene97634:CDS
CTCAACAACTTAATGGGGAT+GGG 0.496517 1.1:+40094331 MS.gene97634:CDS
CTAACAAGGATTTCAACAAA+AGG 0.498510 1.1:-40093713 None:intergenic
CAAACGGATCATATTGGTAC+AGG 0.498648 1.1:-40093808 None:intergenic
TAACAAGGATTTCAACAAAA+GGG 0.527161 1.1:-40093712 None:intergenic
GATTTGATTCCACCTGGTGT+TGG 0.528465 1.1:+40093683 MS.gene97634:CDS
GAAGAGCTTCAGAATTTCCA+TGG 0.531405 1.1:+40093761 MS.gene97634:CDS
TCTAATGACAAGGCAGATCA+AGG 0.532940 1.1:+40094306 MS.gene97634:CDS
ACCTTCATCGACATCAGATA+AGG 0.533255 1.1:-40094265 None:intergenic
AAAACGCGATCAAAACTAGC+TGG 0.533970 1.1:+40094032 MS.gene97634:CDS
GACTATGTACGAGTACACTT+TGG 0.539045 1.1:+40094054 MS.gene97634:CDS
GCCTTATCTGATGTCGATGA+AGG 0.540036 1.1:+40094264 MS.gene97634:CDS
TCAACAACTTAATGGGGATG+GGG 0.541971 1.1:+40094332 MS.gene97634:CDS
GGCTACTCAAGCCACCCCTC+CGG 0.542119 1.1:+40094401 MS.gene97634:CDS
TGGCAAGGTAGTGGCTAACA+AGG 0.543695 1.1:-40093727 None:intergenic
CCACATGGAAGCTATGACGC+CGG 0.546830 1.1:+40095234 MS.gene97634:CDS
CGAGCAAGATGTAATTCAAA+CGG 0.550502 1.1:-40093824 None:intergenic
AGTGCATGCTTAAGTTGCTC+CGG 0.554035 1.1:-40095253 None:intergenic
GATGGGGCTAGTTCTAATGT+TGG 0.560213 1.1:+40094348 MS.gene97634:CDS
CCAAAACTGATGAGCCGAGA+AGG 0.561587 1.1:+40093891 MS.gene97634:CDS
ACTCAACAACTTAATGGGGA+TGG 0.567329 1.1:+40094330 MS.gene97634:CDS
AGCAAAACTCCCTTGTGTCA+GGG 0.570346 1.1:-40093859 None:intergenic
AAAGGGACGAAGCCAACACC+AGG 0.571395 1.1:-40093695 None:intergenic
TGACTGTGTTGTGTCCCACA+TGG 0.589212 1.1:+40095219 MS.gene97634:CDS
TACTGGAGCTGAAGACGTGT+TGG 0.598882 1.1:+40093964 MS.gene97634:CDS
TGGAGCTGAAGACGTGTTGG+TGG 0.601995 1.1:+40093967 MS.gene97634:CDS
TCTAATGTTGGTGTTGAGCA+AGG 0.619581 1.1:+40094360 MS.gene97634:CDS
CCTTAATCAGGTCAAAACCA+TGG 0.619957 1.1:-40093778 None:intergenic
CCGGCGTCATAGCTTCCATG+TGG 0.629672 1.1:-40095234 None:intergenic
CGGCGTCATAGCTTCCATGT+GGG 0.637767 1.1:-40095233 None:intergenic
AGGAACTCAACAACTTAATG+GGG 0.642565 1.1:+40094326 MS.gene97634:CDS
GCAATGGATTTGATTCCACC+TGG 0.660002 1.1:+40093677 None:intergenic
GGGACGAAGCCAACACCAGG+TGG 0.664124 1.1:-40093692 None:intergenic
TGATGACGACTCTAATGACA+AGG 0.686779 1.1:+40094296 MS.gene97634:CDS
GGAGCTGAAGACGTGTTGGT+GGG 0.708570 1.1:+40093968 MS.gene97634:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGCTTAAAAAAATATAAAA+AGG - chr1.1:40095028-40095047 None:intergenic 10.0%
!! TTTAATATAAATAATTGTGT+AGG + chr1.1:40094176-40094195 MS.gene97634:intron 10.0%
!!! ATATTTTTTTAAGCTTTTTG+TGG + chr1.1:40095032-40095051 MS.gene97634:intron 15.0%
!! AAAATATTTCCATCATATGT+GGG + chr1.1:40094579-40094598 MS.gene97634:intron 20.0%
!! ATATGTATTTCACTTTCTAT+TGG + chr1.1:40094542-40094561 MS.gene97634:intron 20.0%
!! TAAAATATTTCCATCATATG+TGG + chr1.1:40094578-40094597 MS.gene97634:intron 20.0%
!! TATTCAAAACCTTTATGTAT+TGG + chr1.1:40094627-40094646 MS.gene97634:intron 20.0%
!! TGTAAAATTCAATTTCAAAG+AGG - chr1.1:40094814-40094833 None:intergenic 20.0%
!!! CAAACTGAAATATATTTTAC+CGG - chr1.1:40094423-40094442 None:intergenic 20.0%
!!! CATAATTTTTGATACAATTG+TGG - chr1.1:40094742-40094761 None:intergenic 20.0%
! CATAAATAATCCAAACACAA+TGG - chr1.1:40094688-40094707 None:intergenic 25.0%
! CCAAAATTACCAATACATAA+AGG - chr1.1:40094639-40094658 None:intergenic 25.0%
! TAACAAGGATTTCAACAAAA+GGG - chr1.1:40093715-40093734 None:intergenic 25.0%
! TCGACGATTAATTTATGTAT+TGG + chr1.1:40094136-40094155 MS.gene97634:intron 25.0%
! TCGATAAAATAACGAACATA+GGG - chr1.1:40094120-40094139 None:intergenic 25.0%
!! TATAAAAAGGACATGTTTTG+AGG - chr1.1:40095015-40095034 None:intergenic 25.0%
!! TCTCTCTTCTTTTTCTATAT+AGG + chr1.1:40093998-40094017 MS.gene97634:CDS 25.0%
!!! AAGCTCTTCATTATTTTTGT+TGG - chr1.1:40093750-40093769 None:intergenic 25.0%
!!! CCTTTATGTATTGGTAATTT+TGG + chr1.1:40094636-40094655 MS.gene97634:intron 25.0%
!!! CTCGATATTTATTTTGTCAT+CGG + chr1.1:40094447-40094466 MS.gene97634:intron 25.0%
!!! GTTTCATATTGTTGTTTATC+AGG + chr1.1:40095177-40095196 MS.gene97634:intron 25.0%
!!! TACATAAAGGTTTTGAATAG+CGG - chr1.1:40094626-40094645 None:intergenic 25.0%
!!! TTATGTATTGGTAATTTTGG+TGG + chr1.1:40094639-40094658 MS.gene97634:intron 25.0%
AAGGAACTCAACAACTTAAT+GGG + chr1.1:40094325-40094344 MS.gene97634:CDS 30.0%
CTAACAAGGATTTCAACAAA+AGG - chr1.1:40093716-40093735 None:intergenic 30.0%
GTAATTCAAACGGATCATAT+TGG - chr1.1:40093817-40093836 None:intergenic 30.0%
GTCGATAAAATAACGAACAT+AGG - chr1.1:40094121-40094140 None:intergenic 30.0%
TTAAGTACGAAAGCCAATAT+TGG + chr1.1:40094763-40094782 MS.gene97634:intron 30.0%
! ACTGAAATATATTTTACCGG+AGG - chr1.1:40094420-40094439 None:intergenic 30.0%
! CTGAAATATATTTTACCGGA+GGG - chr1.1:40094419-40094438 None:intergenic 30.0%
! TGAAATATATTTTACCGGAG+GGG - chr1.1:40094418-40094437 None:intergenic 30.0%
!! AACTTGTTAACTGCCAATAT+TGG - chr1.1:40094779-40094798 None:intergenic 30.0%
!!! CTTCATTATTTTTGTTGGCA+AGG - chr1.1:40093745-40093764 None:intergenic 30.0%
AACTCAATTCATTCACGTGA+TGG + chr1.1:40094833-40094852 MS.gene97634:intron 35.0%
AGCTCCAGTAGTAATGAATT+TGG - chr1.1:40093954-40093973 None:intergenic 35.0%
AGGAACTCAACAACTTAATG+GGG + chr1.1:40094326-40094345 MS.gene97634:CDS 35.0%
CAAGGAACTCAACAACTTAA+TGG + chr1.1:40094324-40094343 MS.gene97634:CDS 35.0%
CGAGCAAGATGTAATTCAAA+CGG - chr1.1:40093827-40093846 None:intergenic 35.0%
CGTTTGAATTACATCTTGCT+CGG + chr1.1:40093825-40093844 MS.gene97634:CDS 35.0%
GGATCTGGACTCTAAATTTA+GGG + chr1.1:40094242-40094261 MS.gene97634:CDS 35.0%
TGGATCTGGACTCTAAATTT+AGG + chr1.1:40094241-40094260 MS.gene97634:CDS 35.0%
TTCCCAAATGACATACTTGA+GGG - chr1.1:40094087-40094106 None:intergenic 35.0%
TTTCCCAAATGACATACTTG+AGG - chr1.1:40094088-40094107 None:intergenic 35.0%
! AACCCTCAAGTATGTCATTT+GGG + chr1.1:40094082-40094101 MS.gene97634:intron 35.0%
! CATCGGCAACAATTTTACAA+TGG + chr1.1:40094464-40094483 MS.gene97634:intron 35.0%
! GGCATTGTAAAACTGGATTT+TGG + chr1.1:40093912-40093931 MS.gene97634:CDS 35.0%
!! TATTTTTGTTGGCAAGGTAG+TGG - chr1.1:40093739-40093758 None:intergenic 35.0%
!!! TAGTTTTGATCGCGTTTTGA+GGG - chr1.1:40094030-40094049 None:intergenic 35.0%
AAAACGCGATCAAAACTAGC+TGG + chr1.1:40094032-40094051 MS.gene97634:CDS 40.0%
ACCTTCATCGACATCAGATA+AGG - chr1.1:40094268-40094287 None:intergenic 40.0%
ACTCAACAACTTAATGGGGA+TGG + chr1.1:40094330-40094349 MS.gene97634:CDS 40.0%
AGGTGATGCATCACATTTCA+TGG + chr1.1:40094380-40094399 MS.gene97634:CDS 40.0%
ATATTGTGGCCCACATATGA+TGG - chr1.1:40094591-40094610 None:intergenic 40.0%
CAAACGGATCATATTGGTAC+AGG - chr1.1:40093811-40093830 None:intergenic 40.0%
CAACCCTCAAGTATGTCATT+TGG + chr1.1:40094081-40094100 MS.gene97634:intron 40.0%
CCAAACACAATGGAGCTATT+TGG - chr1.1:40094678-40094697 None:intergenic 40.0%
CCAAATAGCTCCATTGTGTT+TGG + chr1.1:40094675-40094694 MS.gene97634:intron 40.0%
CCTTAATCAGGTCAAAACCA+TGG - chr1.1:40093781-40093800 None:intergenic 40.0%
CTCAACAACTTAATGGGGAT+GGG + chr1.1:40094331-40094350 MS.gene97634:CDS 40.0%
GAAGAGCTTCAGAATTTCCA+TGG + chr1.1:40093761-40093780 MS.gene97634:CDS 40.0%
GACTATGTACGAGTACACTT+TGG + chr1.1:40094054-40094073 MS.gene97634:CDS 40.0%
GCTGCCAAATTCATTACTAC+TGG + chr1.1:40093947-40093966 MS.gene97634:CDS 40.0%
GGCCACAATATCAATGATAG+GGG + chr1.1:40094600-40094619 MS.gene97634:intron 40.0%
GGGCCACAATATCAATGATA+GGG + chr1.1:40094599-40094618 MS.gene97634:intron 40.0%
TCAACAACTTAATGGGGATG+GGG + chr1.1:40094332-40094351 MS.gene97634:CDS 40.0%
TCTAATGACAAGGCAGATCA+AGG + chr1.1:40094306-40094325 MS.gene97634:CDS 40.0%
TGGGCCACAATATCAATGAT+AGG + chr1.1:40094598-40094617 MS.gene97634:intron 40.0%
! AACTGGATTTTGGATGCAGA+AGG + chr1.1:40093922-40093941 MS.gene97634:CDS 40.0%
! AATATATTTTACCGGAGGGG+TGG - chr1.1:40094415-40094434 None:intergenic 40.0%
! ACTGGATTTTGGATGCAGAA+GGG + chr1.1:40093923-40093942 MS.gene97634:CDS 40.0%
! CCAGTTTTACAATGCCTTCT+CGG - chr1.1:40093908-40093927 None:intergenic 40.0%
! CTTTTTCTTCCCTGACACAA+GGG + chr1.1:40093850-40093869 MS.gene97634:CDS 40.0%
! TGATGACGACTCTAATGACA+AGG + chr1.1:40094296-40094315 MS.gene97634:CDS 40.0%
!! AGTTTTGATCGCGTTTTGAG+GGG - chr1.1:40094029-40094048 None:intergenic 40.0%
!! GTGTTTTTGACTGCTCTAGA+GGG + chr1.1:40094217-40094236 MS.gene97634:CDS 40.0%
!! TCTAATGTTGGTGTTGAGCA+AGG + chr1.1:40094360-40094379 MS.gene97634:CDS 40.0%
!!! AGGACATGTTTTGAGGAATC+TGG - chr1.1:40095008-40095027 None:intergenic 40.0%
!!! CCATGGTTTTGACCTGATTA+AGG + chr1.1:40093778-40093797 MS.gene97634:CDS 40.0%
!!! CTAGTTTTGATCGCGTTTTG+AGG - chr1.1:40094031-40094050 None:intergenic 40.0%
ACAGGTTCAGCTCCTTAATC+AGG - chr1.1:40093793-40093812 None:intergenic 45.0%
AGCAAAACTCCCTTGTGTCA+GGG - chr1.1:40093862-40093881 None:intergenic 45.0%
CCTTGTGTCAGGGAAGAAAA+AGG - chr1.1:40093852-40093871 None:intergenic 45.0%
GATTTGATTCCACCTGGTGT+TGG + chr1.1:40093683-40093702 MS.gene97634:CDS 45.0%
GCAACTTAAGCATGCACTTC+TGG + chr1.1:40095258-40095277 MS.gene97634:CDS 45.0%
GCCTTATCTGATGTCGATGA+AGG + chr1.1:40094264-40094283 MS.gene97634:CDS 45.0%
GGCCCCTATCATTGATATTG+TGG - chr1.1:40094605-40094624 None:intergenic 45.0%
! AGTGCATGCTTAAGTTGCTC+CGG - chr1.1:40095256-40095275 None:intergenic 45.0%
! CCTTTTTCTTCCCTGACACA+AGG + chr1.1:40093849-40093868 MS.gene97634:CDS 45.0%
!! CCGAGAAGGCATTGTAAAAC+TGG + chr1.1:40093905-40093924 MS.gene97634:CDS 45.0%
!! CGTGTTTTTGACTGCTCTAG+AGG + chr1.1:40094216-40094235 MS.gene97634:CDS 45.0%
!! GATGGGGCTAGTTCTAATGT+TGG + chr1.1:40094348-40094367 MS.gene97634:CDS 45.0%
!!! TTTTGACTGCTCTAGAGGGA+TGG + chr1.1:40094221-40094240 MS.gene97634:CDS 45.0%
CAGCAAAACTCCCTTGTGTC+AGG - chr1.1:40093863-40093882 None:intergenic 50.0%
CCAAAACTGATGAGCCGAGA+AGG + chr1.1:40093891-40093910 MS.gene97634:CDS 50.0%
TACTGGAGCTGAAGACGTGT+TGG + chr1.1:40093964-40093983 MS.gene97634:CDS 50.0%
TGACTGTGTTGTGTCCCACA+TGG + chr1.1:40095219-40095238 MS.gene97634:CDS 50.0%
! CCTTCTCGGCTCATCAGTTT+TGG - chr1.1:40093894-40093913 None:intergenic 50.0%
! TGGCAAGGTAGTGGCTAACA+AGG - chr1.1:40093730-40093749 None:intergenic 50.0%
AAAGGGACGAAGCCAACACC+AGG - chr1.1:40093698-40093717 None:intergenic 55.0%
CCACATGGAAGCTATGACGC+CGG + chr1.1:40095234-40095253 MS.gene97634:CDS 55.0%
CGGCGTCATAGCTTCCATGT+GGG - chr1.1:40095236-40095255 None:intergenic 55.0%
TGGAGCTGAAGACGTGTTGG+TGG + chr1.1:40093967-40093986 MS.gene97634:CDS 55.0%
! GGAGCTGAAGACGTGTTGGT+GGG + chr1.1:40093968-40093987 MS.gene97634:CDS 55.0%
!! CTGCTCTAGAGGGATGGATC+TGG + chr1.1:40094227-40094246 MS.gene97634:CDS 55.0%
CCGGCGTCATAGCTTCCATG+TGG - chr1.1:40095237-40095256 None:intergenic 60.0%
GGCTACTCAAGCCACCCCTC+CGG + chr1.1:40094401-40094420 MS.gene97634:CDS 65.0%
GGGACGAAGCCAACACCAGG+TGG - chr1.1:40093695-40093714 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 40093680 40095297 40093680 ID=MS.gene97634
chr1.1 mRNA 40093680 40095297 40093680 ID=MS.gene97634.t1;Parent=MS.gene97634
chr1.1 exon 40093680 40094090 40093680 ID=MS.gene97634.t1.exon1;Parent=MS.gene97634.t1
chr1.1 CDS 40093680 40094090 40093680 ID=cds.MS.gene97634.t1;Parent=MS.gene97634.t1
chr1.1 exon 40094198 40094422 40094198 ID=MS.gene97634.t1.exon2;Parent=MS.gene97634.t1
chr1.1 CDS 40094198 40094422 40094198 ID=cds.MS.gene97634.t1;Parent=MS.gene97634.t1
chr1.1 exon 40095199 40095297 40095199 ID=MS.gene97634.t1.exon3;Parent=MS.gene97634.t1
chr1.1 CDS 40095199 40095297 40095199 ID=cds.MS.gene97634.t1;Parent=MS.gene97634.t1
Gene Sequence

>MS.gene97634

ATGGATTTGATTCCACCTGGTGTTGGCTTCGTCCCTTTTGTTGAAATCCTTGTTAGCCACTACCTTGCCAACAAAAATAATGAAGAGCTTCAGAATTTCCATGGTTTTGACCTGATTAAGGAGCTGAACCTGTACCAATATGATCCGTTTGAATTACATCTTGCTCGGTCCTTTTTCTTCCCTGACACAAGGGAGTTTTGCTGCTTCACTGCCAAAACTGATGAGCCGAGAAGGCATTGTAAAACTGGATTTTGGATGCAGAAGGGAGCTGCCAAATTCATTACTACTGGAGCTGAAGACGTGTTGGTGGGAAAGAAGTCTCTCTTCTTTTTCTATATAGGAAATTCCCCTCAAAACGCGATCAAAACTAGCTGGACTATGTACGAGTACACTTTGGTTAACAACCCTCAAGTATGTCATTTGGGAAAACTAAATTTCCCTATGTTCGTTATTTTATCGACGATTAATTTATGTATTGGTAACAACTAACTTTTTTTTTAATATAAATAATTGTGTAGGCTTCTTTTGTTGTTTGTCGTGTTTTTGACTGCTCTAGAGGGATGGATCTGGACTCTAAATTTAGGGCCTTATCTGATGTCGATGAAGGTGATGCTGCTGATGACGACTCTAATGACAAGGCAGATCAAGGAACTCAACAACTTAATGGGGATGGGGCTAGTTCTAATGTTGGTGTTGAGCAAGGTGATGCATCACATTTCATGGCTACTCAAGCCACCCCTCCGGTAAAATATATTTCAGTTTGATCTCTCGATATTTATTTTGTCATCGGCAACAATTTTACAATGGTTAAATTTGTCTGAAATCAAAATTCAAAATTATTTTTTGTTTATTTTTGTTTATTATATGTATTTCACTTTCTATTGGACATTAGTTTTAATAAAATATTTCCATCATATGTGGGCCACAATATCAATGATAGGGGCCGCTATTCAAAACCTTTATGTATTGGTAATTTTGGTGGTTGATGTTTGAATCCAAATAGCTCCATTGTGTTTGGATTATTTATGTTTTGCAGTTGTTATTTACATAATTCTACATCCACAATTGTATCAAAAATTATGTTTAAGTACGAAAGCCAATATTGGCAGTTAACAAGTTAATGTTGTTGATCCTCTTTGAAATTGAATTTTACAACTCAATTCATTCACGTGATGGCATTTTTTTTTTTTGATTAATTTTATTGAATGTATCACTATGCACATATATATGTTTTTTTCTTTTCTTTTTTTTCTTTTTTGTGTGTAGAAATTAAGTGATGATTCTCAAAACATGTAACAAATTAATAGTTAACATAGCTATTCTAACCAGATTCCTCAAAACATGTCCTTTTTATATTTTTTTAAGCTTTTTGTGGTATTAAATTCATTATTATTATTATTATTATTATTAATATCATCATCACTTTTTGACAAAGCATTTTTTCATGTAATTTTATGCTCGAGAAAATAAAGTTTTGCTGAAATATTGAATTTCTTTGTTTCATATTGTTGTTTATCAGGCGAGTTATACTGCATTTCTTGACTGTGTTGTGTCCCACATGGAAGCTATGACGCCGGAGCAACTTAAGCATGCACTTCTGGAAGAAGATTTTATTTAA
Protein sequence

>MS.gene97634.t1

MDLIPPGVGFVPFVEILVSHYLANKNNEELQNFHGFDLIKELNLYQYDPFELHLARSFFFPDTREFCCFTAKTDEPRRHCKTGFWMQKGAAKFITTGAEDVLVGKKSLFFFYIGNSPQNAIKTSWTMYEYTLVNNPQASFVVCRVFDCSRGMDLDSKFRALSDVDEGDAADDDSNDKADQGTQQLNGDGASSNVGVEQGDASHFMATQATPPASYTAFLDCVVSHMEAMTPEQLKHALLEEDFI