Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97637.t1 | KEH41673.1 | 73.1 | 331 | 18 | 3 | 1 | 268 | 1 | 323 | 2.40E-114 | 421.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97637.t1 | A0A072VJQ5 | 73.1 | 331 | 18 | 3 | 1 | 268 | 1 | 323 | 1.7e-114 | 421.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene97637.t1 | TF | NAC |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97637.t1 | MTR_1g053575 | 66.163 | 331 | 41 | 5 | 1 | 268 | 1 | 323 | 3.71e-139 | 394 |
MS.gene97637.t1 | MTR_1g045470 | 51.515 | 330 | 91 | 8 | 1 | 267 | 1 | 324 | 2.46e-91 | 273 |
MS.gene97637.t1 | MTR_7g116460 | 59.615 | 208 | 51 | 6 | 1 | 183 | 1 | 200 | 1.27e-76 | 231 |
MS.gene97637.t1 | MTR_1g019820 | 34.783 | 207 | 80 | 4 | 102 | 254 | 5 | 210 | 1.99e-26 | 103 |
MS.gene97637.t1 | MTR_7g005280 | 32.738 | 168 | 90 | 9 | 11 | 170 | 19 | 171 | 3.53e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97637.t1 | AT5G13180 | 34.194 | 155 | 79 | 10 | 11 | 158 | 18 | 156 | 7.68e-11 | 61.2 |
Find 52 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAAGAATCCTTGGGATATT+TGG | 0.040443 | 1.1:-39983949 | MS.gene97637:CDS |
GTTTCATGAAGAGTTATTAT+TGG | 0.203680 | 1.1:-39982220 | MS.gene97637:CDS |
TTCAAGAATGGTGATGTAAT+TGG | 0.213249 | 1.1:+39983991 | None:intergenic |
AAATATCCCAAGGATTCTTT+AGG | 0.262491 | 1.1:+39983951 | None:intergenic |
TCATTGTCAGGTTGAACTAT+TGG | 0.266404 | 1.1:+39982417 | None:intergenic |
CAGGTTGAACTATTGGATTT+TGG | 0.311938 | 1.1:+39982424 | None:intergenic |
AAAGAATCCTTGGGATATTT+GGG | 0.338135 | 1.1:-39983948 | MS.gene97637:CDS |
TGGGATATTTGGGAAGAGTT+TGG | 0.341365 | 1.1:-39983938 | MS.gene97637:CDS |
ATTCTTGAATACGATTTGTT+TGG | 0.353129 | 1.1:-39983977 | MS.gene97637:CDS |
ATCTTTGATAAGAAATCCTT+TGG | 0.365896 | 1.1:-39983663 | MS.gene97637:intron |
TCTCAATTCTTCTTCAAGTA+AGG | 0.366602 | 1.1:-39984086 | MS.gene97637:CDS |
TTAAGGTAGTGAAGAAATAT+AGG | 0.367031 | 1.1:+39983888 | None:intergenic |
AATTGGGAAGAGATTTGTTA+TGG | 0.367059 | 1.1:+39984008 | None:intergenic |
TCGAAAGTAGTTCGTTCTAT+TGG | 0.368294 | 1.1:-39983839 | MS.gene97637:CDS |
AATATCCCAAGGATTCTTTA+GGG | 0.371252 | 1.1:+39983952 | None:intergenic |
CAGTGGTAGATTTCTTCTCT+AGG | 0.372963 | 1.1:+39983864 | None:intergenic |
GTAGTTCGTTCTATTGGAAT+TGG | 0.374249 | 1.1:-39983833 | MS.gene97637:CDS |
TCAAGAATGGTGATGTAATT+GGG | 0.404508 | 1.1:+39983992 | None:intergenic |
AGATTTCTTCTCTAGGGTTA+AGG | 0.417289 | 1.1:+39983871 | None:intergenic |
GAAAGAAAGACCATTGTTCC+TGG | 0.417462 | 1.1:-39983491 | MS.gene97637:CDS |
TCATCATCATCTTCATTGTC+AGG | 0.417702 | 1.1:+39982405 | None:intergenic |
AAATGACGACGAAAGCTTTG+TGG | 0.419890 | 1.1:-39982358 | MS.gene97637:CDS |
TTGGTACCCTAAAGAATCCT+TGG | 0.424102 | 1.1:-39983958 | MS.gene97637:CDS |
AATCAAGTAACTTACAGATA+TGG | 0.426262 | 1.1:+39983454 | None:intergenic |
TCTGCATAGAACATAATTGT+TGG | 0.465415 | 1.1:+39983544 | None:intergenic |
TGGGAAGGTGAAGAAGATAC+TGG | 0.487089 | 1.1:-39983806 | MS.gene97637:CDS |
TGGTACCCTAAAGAATCCTT+GGG | 0.489046 | 1.1:-39983957 | MS.gene97637:CDS |
AGTGGTAGATTTCTTCTCTA+GGG | 0.491270 | 1.1:+39983865 | None:intergenic |
GTTCTATTGGAATTGGTGCA+TGG | 0.508402 | 1.1:-39983826 | MS.gene97637:CDS |
AAACAAATCGTATTCAAGAA+TGG | 0.519788 | 1.1:+39983979 | None:intergenic |
GCACTTACCATGATGGTGTA+TGG | 0.524546 | 1.1:-39983712 | MS.gene97637:CDS |
GACAATGAAGATGATGATGA+TGG | 0.525335 | 1.1:-39982402 | MS.gene97637:CDS |
ATGCTTGATCGAAGAGGAAG+AGG | 0.530574 | 1.1:-39982262 | MS.gene97637:CDS |
GAGCTGATAGAGATGAATGA+AGG | 0.539230 | 1.1:-39982285 | MS.gene97637:CDS |
ATGGTGGTTTCTGCACGTCC+AGG | 0.545124 | 1.1:+39983473 | None:intergenic |
TTCTATTGGAATTGGTGCAT+GGG | 0.546914 | 1.1:-39983825 | MS.gene97637:CDS |
TTCTTATCAAAGATTTGTCG+AGG | 0.569506 | 1.1:+39983672 | None:intergenic |
ATGATGATGCTGGTATGTCT+TGG | 0.577942 | 1.1:-39982326 | MS.gene97637:CDS |
AACTCTTCCCAAATATCCCA+AGG | 0.585203 | 1.1:+39983941 | None:intergenic |
CAAGTAACTTACAGATATGG+TGG | 0.592493 | 1.1:+39983457 | None:intergenic |
TTCTGCACGTCCAGGAACAA+TGG | 0.595867 | 1.1:+39983481 | None:intergenic |
GCAAGATCCATACACCATCA+TGG | 0.596947 | 1.1:+39983705 | None:intergenic |
ACAATGAAGATGATGATGAT+GGG | 0.598315 | 1.1:-39982401 | MS.gene97637:CDS |
TGAAGGATGCTTGATCGAAG+AGG | 0.615586 | 1.1:-39982268 | MS.gene97637:CDS |
CTAGAGAAGAAATCTACCAC+TGG | 0.627112 | 1.1:-39983863 | MS.gene97637:CDS |
ATTGGAATTGGTGCATGGGA+AGG | 0.630255 | 1.1:-39983821 | MS.gene97637:CDS |
ACGAACTACTTTCGAGCCAG+TGG | 0.633329 | 1.1:+39983847 | None:intergenic |
GACGAAGAAGATGATGATGC+TGG | 0.640357 | 1.1:-39982336 | MS.gene97637:CDS |
AGAAAGAATATTGATGCACA+AGG | 0.643759 | 1.1:-39983518 | MS.gene97637:CDS |
CAATGAAGATGATGATGATG+GGG | 0.651017 | 1.1:-39982400 | MS.gene97637:CDS |
AATAGTGGCACTTACCATGA+TGG | 0.654883 | 1.1:-39983719 | MS.gene97637:CDS |
TGATGATGGGGAATGCATTG+TGG | 0.656507 | 1.1:-39982388 | MS.gene97637:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTATATAACAATAAATGT+AGG | + | chr1.1:39983223-39983242 | None:intergenic | 10.0% |
!!! | CTTATTTAAATTTTATTTGT+TGG | + | chr1.1:39983520-39983539 | None:intergenic | 10.0% |
!!! | TCTTTTTTTTTTTTTTTTGT+AGG | - | chr1.1:39982724-39982743 | MS.gene97637:intron | 10.0% |
!!! | AAATTGGTAAATTTTAGTTT+TGG | + | chr1.1:39983545-39983564 | None:intergenic | 15.0% |
!!! | TCAAATGTTTTTCATAAAAT+CGG | + | chr1.1:39983589-39983608 | None:intergenic | 15.0% |
!! | AAAAAGATGTGAGAAATATT+TGG | - | chr1.1:39983106-39983125 | MS.gene97637:intron | 20.0% |
!! | AATTGATCATATGTAATGTA+AGG | - | chr1.1:39983252-39983271 | MS.gene97637:intron | 20.0% |
!! | ATTGATCATATGTAATGTAA+GGG | - | chr1.1:39983253-39983272 | MS.gene97637:intron | 20.0% |
!! | CATCTTTAAGTATTCAATAA+TGG | - | chr1.1:39983378-39983397 | MS.gene97637:intron | 20.0% |
!! | CTTGATTCAAGATTTAATAA+TGG | - | chr1.1:39982900-39982919 | MS.gene97637:intron | 20.0% |
!!! | CAACATAATTTTTTTTGAAG+AGG | + | chr1.1:39982880-39982899 | None:intergenic | 20.0% |
!!! | CCTATTTTTATCTTATTGTT+GGG | - | chr1.1:39983406-39983425 | MS.gene97637:intron | 20.0% |
!!! | TCCTATTTTTATCTTATTGT+TGG | - | chr1.1:39983405-39983424 | MS.gene97637:intron | 20.0% |
!!! | TGTTTTCATCTCAATAAAAT+TGG | + | chr1.1:39983561-39983580 | None:intergenic | 20.0% |
! | AAACAAATCGTATTCAAGAA+TGG | + | chr1.1:39982315-39982334 | None:intergenic | 25.0% |
! | AATCAAGTAACTTACAGATA+TGG | + | chr1.1:39982840-39982859 | None:intergenic | 25.0% |
! | AATTAGAATGCAAAATGAGT+TGG | + | chr1.1:39983787-39983806 | None:intergenic | 25.0% |
! | ATCTTTGATAAGAAATCCTT+TGG | - | chr1.1:39982628-39982647 | MS.gene97637:intron | 25.0% |
! | ATGTTAATGAGAAAAACAAC+CGG | + | chr1.1:39982940-39982959 | None:intergenic | 25.0% |
! | ATTGAACATGGAAAAAGTTA+AGG | + | chr1.1:39983614-39983633 | None:intergenic | 25.0% |
! | CCCAACAATAAGATAAAAAT+AGG | + | chr1.1:39983409-39983428 | None:intergenic | 25.0% |
! | GTTTCATGAAGAGTTATTAT+TGG | - | chr1.1:39984071-39984090 | MS.gene97637:CDS | 25.0% |
! | TAATACAGAGTCTGATTATA+AGG | - | chr1.1:39983077-39983096 | MS.gene97637:intron | 25.0% |
! | TGTAGAACTTACAAATTTGT+TGG | + | chr1.1:39983166-39983185 | None:intergenic | 25.0% |
! | TTAAGGTAGTGAAGAAATAT+AGG | + | chr1.1:39982406-39982425 | None:intergenic | 25.0% |
!! | ATTCTTGAATACGATTTGTT+TGG | - | chr1.1:39982314-39982333 | MS.gene97637:CDS | 25.0% |
!! | CATTCTTGATTTGATATGTA+GGG | - | chr1.1:39982970-39982989 | MS.gene97637:intron | 25.0% |
!!! | GAACTTCACATTTTATTTCT+GGG | - | chr1.1:39983656-39983675 | MS.gene97637:intron | 25.0% |
!!! | GTTTTTTAACCTATTGAACA+TGG | + | chr1.1:39983626-39983645 | None:intergenic | 25.0% |
!!! | TAACTTTTTCCATGTTCAAT+AGG | - | chr1.1:39983614-39983633 | MS.gene97637:intron | 25.0% |
AAAGAATCCTTGGGATATTT+GGG | - | chr1.1:39982343-39982362 | MS.gene97637:CDS | 30.0% | |
AAATATCCCAAGGATTCTTT+AGG | + | chr1.1:39982343-39982362 | None:intergenic | 30.0% | |
AATATCCCAAGGATTCTTTA+GGG | + | chr1.1:39982342-39982361 | None:intergenic | 30.0% | |
AATGGATACATTTCAAGATC+CGG | - | chr1.1:39982918-39982937 | MS.gene97637:intron | 30.0% | |
AGAAAGAATATTGATGCACA+AGG | - | chr1.1:39982773-39982792 | MS.gene97637:intron | 30.0% | |
GATGATAGTAACATACTAAC+TGG | + | chr1.1:39983362-39983381 | None:intergenic | 30.0% | |
TAAAGAATCCTTGGGATATT+TGG | - | chr1.1:39982342-39982361 | MS.gene97637:CDS | 30.0% | |
TCTCAATTCTTCTTCAAGTA+AGG | - | chr1.1:39982205-39982224 | MS.gene97637:CDS | 30.0% | |
TCTGCATAGAACATAATTGT+TGG | + | chr1.1:39982750-39982769 | None:intergenic | 30.0% | |
TGGACTTTATAGGACAAATA+TGG | - | chr1.1:39983053-39983072 | MS.gene97637:intron | 30.0% | |
TTCTTATCAAAGATTTGTCG+AGG | + | chr1.1:39982622-39982641 | None:intergenic | 30.0% | |
! | ACAATGAAGATGATGATGAT+GGG | - | chr1.1:39983890-39983909 | MS.gene97637:CDS | 30.0% |
! | CGTAGTTTAATCTTTTGACA+TGG | + | chr1.1:39983727-39983746 | None:intergenic | 30.0% |
! | GCATTCTTGATTTGATATGT+AGG | - | chr1.1:39982969-39982988 | MS.gene97637:intron | 30.0% |
! | TCAAGAATGGTGATGTAATT+GGG | + | chr1.1:39982302-39982321 | None:intergenic | 30.0% |
! | TTCAAGAATGGTGATGTAAT+TGG | + | chr1.1:39982303-39982322 | None:intergenic | 30.0% |
!! | AATCAAATGGTGGACTTTAT+AGG | - | chr1.1:39983043-39983062 | MS.gene97637:intron | 30.0% |
!! | AATTGGGAAGAGATTTGTTA+TGG | + | chr1.1:39982286-39982305 | None:intergenic | 30.0% |
!! | CGAACTTCACATTTTATTTC+TGG | - | chr1.1:39983655-39983674 | MS.gene97637:intron | 30.0% |
!! | GGATTTTGTTGTAGAGAAAT+CGG | + | chr1.1:39982265-39982284 | None:intergenic | 30.0% |
!! | TGTTTTCGATTTGAGAATAG+TGG | - | chr1.1:39982557-39982576 | MS.gene97637:intron | 30.0% |
!!! | CTCTTGCATTCTCATTTTTT+AGG | - | chr1.1:39983834-39983853 | MS.gene97637:CDS | 30.0% |
!!! | GAAAACATTTTTTCACACCA+AGG | + | chr1.1:39982544-39982563 | None:intergenic | 30.0% |
AAAAACAAGAACCAACTCCT+TGG | - | chr1.1:39982524-39982543 | MS.gene97637:intron | 35.0% | |
AGTGGTAGATTTCTTCTCTA+GGG | + | chr1.1:39982429-39982448 | None:intergenic | 35.0% | |
CAAGTAACTTACAGATATGG+TGG | + | chr1.1:39982837-39982856 | None:intergenic | 35.0% | |
GTAGTTCGTTCTATTGGAAT+TGG | - | chr1.1:39982458-39982477 | MS.gene97637:intron | 35.0% | |
TCATCATCATCTTCATTGTC+AGG | + | chr1.1:39983889-39983908 | None:intergenic | 35.0% | |
TCGAAAGTAGTTCGTTCTAT+TGG | - | chr1.1:39982452-39982471 | MS.gene97637:intron | 35.0% | |
TGTATCACATTGCTTACCAA+AGG | + | chr1.1:39982647-39982666 | None:intergenic | 35.0% | |
TTCTATTGGAATTGGTGCAT+GGG | - | chr1.1:39982466-39982485 | MS.gene97637:intron | 35.0% | |
! | AGAATGCAAGAGCACAATAA+GGG | + | chr1.1:39983826-39983845 | None:intergenic | 35.0% |
! | CAATGAAGATGATGATGATG+GGG | - | chr1.1:39983891-39983910 | MS.gene97637:CDS | 35.0% |
! | GACAATGAAGATGATGATGA+TGG | - | chr1.1:39983889-39983908 | MS.gene97637:CDS | 35.0% |
!! | AGATTTCTTCTCTAGGGTTA+AGG | + | chr1.1:39982423-39982442 | None:intergenic | 35.0% |
!! | CAGGTTGAACTATTGGATTT+TGG | + | chr1.1:39983870-39983889 | None:intergenic | 35.0% |
!! | TCATTGTCAGGTTGAACTAT+TGG | + | chr1.1:39983877-39983896 | None:intergenic | 35.0% |
!!! | ATTTTTTCACACCAAGGAGT+TGG | + | chr1.1:39982538-39982557 | None:intergenic | 35.0% |
AAATGACGACGAAAGCTTTG+TGG | - | chr1.1:39983933-39983952 | MS.gene97637:CDS | 40.0% | |
AACTCTTCCCAAATATCCCA+AGG | + | chr1.1:39982353-39982372 | None:intergenic | 40.0% | |
AATAGTGGCACTTACCATGA+TGG | - | chr1.1:39982572-39982591 | MS.gene97637:intron | 40.0% | |
AGCTCCTTTGCAAAAATCTC+AGG | + | chr1.1:39983991-39984010 | None:intergenic | 40.0% | |
CAGTGGTAGATTTCTTCTCT+AGG | + | chr1.1:39982430-39982449 | None:intergenic | 40.0% | |
CTAAGAATGGTTGTCTCTCT+TGG | + | chr1.1:39983132-39983151 | None:intergenic | 40.0% | |
CTAGAGAAGAAATCTACCAC+TGG | - | chr1.1:39982428-39982447 | MS.gene97637:CDS | 40.0% | |
GAAAGAAAGACCATTGTTCC+TGG | - | chr1.1:39982800-39982819 | MS.gene97637:intron | 40.0% | |
GAACCAAGAAGCGAATCAAA+TGG | - | chr1.1:39983030-39983049 | MS.gene97637:intron | 40.0% | |
GAGCTGATAGAGATGAATGA+AGG | - | chr1.1:39984006-39984025 | MS.gene97637:CDS | 40.0% | |
GTTCTATTGGAATTGGTGCA+TGG | - | chr1.1:39982465-39982484 | MS.gene97637:intron | 40.0% | |
TGGGATATTTGGGAAGAGTT+TGG | - | chr1.1:39982353-39982372 | MS.gene97637:CDS | 40.0% | |
TGGTACCCTAAAGAATCCTT+GGG | - | chr1.1:39982334-39982353 | MS.gene97637:CDS | 40.0% | |
TTGGTACCCTAAAGAATCCT+TGG | - | chr1.1:39982333-39982352 | MS.gene97637:CDS | 40.0% | |
! | ATGATGATGCTGGTATGTCT+TGG | - | chr1.1:39983965-39983984 | MS.gene97637:CDS | 40.0% |
! | GAGAATGCAAGAGCACAATA+AGG | + | chr1.1:39983827-39983846 | None:intergenic | 40.0% |
! | TTGGCCTGAGATTTTTGCAA+AGG | - | chr1.1:39983984-39984003 | MS.gene97637:CDS | 40.0% |
ATGCTTGATCGAAGAGGAAG+AGG | - | chr1.1:39984029-39984048 | MS.gene97637:CDS | 45.0% | |
ATTGGAATTGGTGCATGGGA+AGG | - | chr1.1:39982470-39982489 | MS.gene97637:intron | 45.0% | |
CCAAGAAGCGAATCAAATGG+TGG | - | chr1.1:39983033-39983052 | MS.gene97637:intron | 45.0% | |
GCAAGATCCATACACCATCA+TGG | + | chr1.1:39982589-39982608 | None:intergenic | 45.0% | |
GGCTTCTTCGAGTCTAAGAA+TGG | + | chr1.1:39983145-39983164 | None:intergenic | 45.0% | |
TGAAGGATGCTTGATCGAAG+AGG | - | chr1.1:39984023-39984042 | MS.gene97637:CDS | 45.0% | |
TGGGAAGGTGAAGAAGATAC+TGG | - | chr1.1:39982485-39982504 | MS.gene97637:intron | 45.0% | |
! | CCACCATTTGATTCGCTTCT+TGG | + | chr1.1:39983036-39983055 | None:intergenic | 45.0% |
! | GACGAAGAAGATGATGATGC+TGG | - | chr1.1:39983955-39983974 | MS.gene97637:CDS | 45.0% |
! | GCACTTACCATGATGGTGTA+TGG | - | chr1.1:39982579-39982598 | MS.gene97637:intron | 45.0% |
!! | TGATGATGGGGAATGCATTG+TGG | - | chr1.1:39983903-39983922 | MS.gene97637:CDS | 45.0% |
ACGAACTACTTTCGAGCCAG+TGG | + | chr1.1:39982447-39982466 | None:intergenic | 50.0% | |
TTCTGCACGTCCAGGAACAA+TGG | + | chr1.1:39982813-39982832 | None:intergenic | 50.0% | |
ATGGTGGTTTCTGCACGTCC+AGG | + | chr1.1:39982821-39982840 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 39982200 | 39984113 | 39982200 | ID=MS.gene97637 |
chr1.1 | mRNA | 39982200 | 39984113 | 39982200 | ID=MS.gene97637.t1;Parent=MS.gene97637 |
chr1.1 | exon | 39983664 | 39984113 | 39983664 | ID=MS.gene97637.t1.exon1;Parent=MS.gene97637.t1 |
chr1.1 | CDS | 39983664 | 39984113 | 39983664 | ID=cds.MS.gene97637.t1;Parent=MS.gene97637.t1 |
chr1.1 | exon | 39983469 | 39983567 | 39983469 | ID=MS.gene97637.t1.exon2;Parent=MS.gene97637.t1 |
chr1.1 | CDS | 39983469 | 39983567 | 39983469 | ID=cds.MS.gene97637.t1;Parent=MS.gene97637.t1 |
chr1.1 | exon | 39982200 | 39982457 | 39982200 | ID=MS.gene97637.t1.exon3;Parent=MS.gene97637.t1 |
chr1.1 | CDS | 39982200 | 39982457 | 39982200 | ID=cds.MS.gene97637.t1;Parent=MS.gene97637.t1 |
Gene Sequence |
Protein sequence |