AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene97733

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97733.t1 MTR_5g029470 96.790 405 6 5 1 401 1 402 0.0 781
MS.gene97733.t1 MTR_8g066310 56.404 406 115 16 1 398 1 352 1.43e-121 356
MS.gene97733.t1 MTR_3g064840 52.968 219 65 8 200 400 256 454 2.69e-51 179
MS.gene97733.t1 MTR_1g021520 46.032 189 72 7 212 400 120 278 6.00e-37 136
MS.gene97733.t1 MTR_6g071625 76.744 86 18 1 200 283 182 267 2.82e-36 136
MS.gene97733.t1 MTR_7g069660 44.355 124 42 4 177 290 45 151 1.06e-22 98.6
MS.gene97733.t1 MTR_1g112370 48.113 106 47 4 217 316 21 124 6.81e-21 93.2
MS.gene97733.t1 MTR_0223s0040 65.517 58 20 0 217 274 17 74 8.44e-21 92.0
MS.gene97733.t1 MTR_2g023580 59.722 72 28 1 211 282 49 119 5.40e-20 88.6
MS.gene97733.t1 MTR_2g084230 68.966 58 18 0 217 274 96 153 1.04e-19 89.4
MS.gene97733.t1 MTR_2g084230 68.966 58 18 0 217 274 96 153 1.74e-19 89.7
MS.gene97733.t1 MTR_8g086410 64.062 64 22 1 217 280 108 170 3.56e-19 89.4
MS.gene97733.t1 MTR_8g086410 64.062 64 22 1 217 280 110 172 3.71e-19 89.4
MS.gene97733.t1 MTR_2g016220 58.571 70 28 1 217 286 88 156 4.26e-18 85.5
MS.gene97733.t1 MTR_2g016220 58.571 70 28 1 217 286 88 156 4.57e-18 85.5
MS.gene97733.t1 MTR_7g098250 61.905 63 24 0 212 274 256 318 1.27e-17 84.7
MS.gene97733.t1 MTR_8g086410 64.286 56 20 0 217 272 110 165 2.67e-17 83.6
MS.gene97733.t1 MTR_1g080330 63.333 60 22 0 215 274 172 231 4.86e-17 81.3
MS.gene97733.t1 MTR_1g080330 63.333 60 22 0 215 274 172 231 5.25e-17 82.4
MS.gene97733.t1 MTR_7g115530 64.286 56 20 0 219 274 219 274 8.30e-17 80.9
MS.gene97733.t1 MTR_5g027440 69.811 53 16 0 219 271 26 78 8.84e-17 80.5
MS.gene97733.t1 MTR_3g450310 58.929 56 23 0 219 274 20 75 9.83e-17 79.0
MS.gene97733.t1 MTR_7g115530 64.286 56 20 0 219 274 219 274 1.68e-16 80.1
MS.gene97733.t1 MTR_7g115530 64.286 56 20 0 219 274 219 274 2.12e-16 80.9
MS.gene97733.t1 MTR_7g115530 64.286 56 20 0 219 274 219 274 2.28e-16 80.1
MS.gene97733.t1 MTR_7g093030 52.941 68 30 1 220 287 214 279 2.75e-16 79.3
MS.gene97733.t1 MTR_2g016220 55.405 74 28 2 217 286 88 160 3.81e-16 79.7
MS.gene97733.t1 MTR_7g093030 60.000 55 22 0 220 274 214 268 5.78e-16 79.3
MS.gene97733.t1 MTR_5g041350 44.872 78 43 0 219 296 16 93 1.70e-15 77.4
MS.gene97733.t1 MTR_7g088070 61.818 55 21 0 220 274 52 106 1.78e-15 76.6
MS.gene97733.t1 MTR_7g088070 61.818 55 21 0 220 274 52 106 2.01e-15 76.3
MS.gene97733.t1 MTR_1g053835 60.000 55 22 0 220 274 260 314 2.72e-15 77.4
MS.gene97733.t1 MTR_2g027860 50.649 77 36 1 220 296 51 125 2.85e-15 76.6
MS.gene97733.t1 MTR_1g090670 58.333 60 25 0 219 278 45 104 4.87e-15 75.5
MS.gene97733.t1 MTR_2g086450 58.929 56 23 0 219 274 46 101 4.94e-15 76.6
MS.gene97733.t1 MTR_6g444980 58.929 56 23 0 219 274 36 91 6.89e-15 75.9
MS.gene97733.t1 MTR_6g444980 58.929 56 23 0 219 274 36 91 7.62e-15 75.9
MS.gene97733.t1 MTR_2g027800 50.000 74 34 1 219 289 40 113 9.06e-15 75.1
MS.gene97733.t1 MTR_7g115530 63.462 52 19 0 219 270 219 270 1.85e-14 73.9
MS.gene97733.t1 MTR_6g032990 56.140 57 25 0 219 275 43 99 2.09e-14 74.7
MS.gene97733.t1 MTR_2g027800 62.264 53 20 0 219 271 40 92 2.58e-14 73.6
MS.gene97733.t1 MTR_7g115530 66.000 50 17 0 219 268 219 268 2.70e-14 73.2
MS.gene97733.t1 MTR_4g081710 54.386 57 26 0 219 275 18 74 9.47e-14 72.4
MS.gene97733.t1 MTR_1g053830 50.909 55 27 0 220 274 20 74 5.28e-12 62.4
MS.gene97733.t1 MTR_7g068600 55.172 58 23 1 220 274 15 72 7.43e-12 65.1
MS.gene97733.t1 MTR_1g053800 52.830 53 25 0 220 272 179 231 7.88e-12 66.2
MS.gene97733.t1 MTR_7g093010 39.535 86 49 1 220 305 215 297 1.41e-11 65.9
MS.gene97733.t1 MTR_2g450070 43.210 81 39 2 215 289 210 289 2.68e-11 65.9
MS.gene97733.t1 MTR_2g450070 43.210 81 39 2 215 289 210 289 2.73e-11 65.9
MS.gene97733.t1 MTR_4g086835 51.282 78 34 2 217 292 273 348 3.68e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97733.t1 AT1G32240 53.846 416 145 14 1 399 1 386 3.70e-102 308
MS.gene97733.t1 AT1G32240 53.243 370 130 11 1 355 1 342 1.03e-93 286
MS.gene97733.t1 AT4G17695 38.702 416 141 14 1 400 1 318 1.55e-61 201
MS.gene97733.t1 AT5G16560 39.640 333 125 12 125 400 85 398 1.87e-48 169
MS.gene97733.t1 AT1G32240 61.589 151 42 7 253 399 1 139 8.17e-39 136
MS.gene97733.t1 AT5G42630 80.000 75 15 0 213 287 100 174 2.08e-35 130
MS.gene97733.t1 AT5G42630 59.016 122 43 2 213 330 100 218 5.16e-35 130
MS.gene97733.t1 AT2G38300 55.000 80 35 1 211 290 48 126 5.33e-21 93.6
MS.gene97733.t1 AT2G02060 72.222 54 15 0 218 271 29 82 5.13e-20 89.4
MS.gene97733.t1 AT2G02060 72.222 54 15 0 218 271 29 82 5.13e-20 89.4
MS.gene97733.t1 AT1G14600 66.102 59 20 0 218 276 23 81 9.90e-20 88.6
MS.gene97733.t1 AT4G04605 65.517 58 20 0 217 274 13 70 1.23e-19 87.4
MS.gene97733.t1 AT5G45580 46.087 115 53 3 219 325 8 121 1.96e-19 87.8
MS.gene97733.t1 AT5G45580 46.087 115 53 3 219 325 24 137 3.61e-19 87.4
MS.gene97733.t1 AT2G40260 62.687 67 24 1 211 277 76 141 1.53e-18 87.4
MS.gene97733.t1 AT4G04580 59.322 59 24 0 219 277 15 73 4.76e-18 81.3
MS.gene97733.t1 AT2G42660 66.071 56 19 0 219 274 51 106 7.93e-18 82.8
MS.gene97733.t1 AT4G04555 53.425 73 31 2 202 274 1 70 7.18e-17 76.3
MS.gene97733.t1 AT4G28610 65.455 55 19 0 220 274 227 281 3.51e-16 80.1
MS.gene97733.t1 AT3G12730 62.500 56 21 0 219 274 24 79 5.03e-16 77.4
MS.gene97733.t1 AT5G29000 52.778 72 34 0 220 291 233 304 1.20e-15 77.8
MS.gene97733.t1 AT2G01060 63.636 55 20 0 220 274 17 71 1.72e-15 76.6
MS.gene97733.t1 AT3G04450 56.250 64 28 0 211 274 231 294 1.84e-15 77.0
MS.gene97733.t1 AT3G24120 62.264 53 20 0 219 271 42 94 2.97e-15 76.3
MS.gene97733.t1 AT3G04450 54.286 70 31 1 206 274 185 254 3.03e-15 77.4
MS.gene97733.t1 AT3G04450 54.286 70 31 1 206 274 185 254 3.03e-15 77.4
MS.gene97733.t1 AT3G24120 62.264 53 20 0 219 271 42 94 3.16e-15 76.3
MS.gene97733.t1 AT3G04450 54.286 70 31 1 206 274 225 294 3.16e-15 77.4
MS.gene97733.t1 AT5G29000 54.545 66 30 0 220 285 190 255 3.57e-15 77.0
MS.gene97733.t1 AT5G29000 54.545 66 30 0 220 285 190 255 3.57e-15 77.0
MS.gene97733.t1 AT5G29000 54.545 66 30 0 220 285 233 298 4.77e-15 76.6
MS.gene97733.t1 AT1G79430 58.929 56 23 0 219 274 35 90 5.51e-15 76.3
MS.gene97733.t1 AT4G13640 60.377 53 21 0 219 271 38 90 1.07e-14 74.7
MS.gene97733.t1 AT4G13640 60.377 53 21 0 219 271 38 90 1.09e-14 74.7
MS.gene97733.t1 AT5G06800 50.794 63 31 0 212 274 186 248 2.42e-14 73.2
MS.gene97733.t1 AT5G18240 55.357 56 25 0 219 274 46 101 4.31e-14 73.9
MS.gene97733.t1 AT5G18240 55.357 56 25 0 219 274 46 101 4.31e-14 73.9
MS.gene97733.t1 AT3G04030 53.571 56 26 0 219 274 46 101 4.84e-14 73.6
MS.gene97733.t1 AT5G18240 55.357 56 25 0 219 274 46 101 4.90e-14 73.6
MS.gene97733.t1 AT5G18240 55.357 56 25 0 219 274 46 101 5.22e-14 73.6
MS.gene97733.t1 AT5G18240 55.357 56 25 0 219 274 46 101 5.22e-14 73.6
MS.gene97733.t1 AT3G04030 53.571 56 26 0 219 274 46 101 5.77e-14 73.6
MS.gene97733.t1 AT3G13040 46.154 104 50 3 175 274 196 297 6.54e-14 73.6
MS.gene97733.t1 AT3G13040 46.154 104 50 3 175 274 196 297 6.54e-14 73.6
MS.gene97733.t1 AT3G13040 46.154 104 50 3 175 274 196 297 6.54e-14 73.6
MS.gene97733.t1 AT2G20400 63.636 55 20 0 220 274 233 287 7.05e-14 73.2
MS.gene97733.t1 AT2G20400 63.636 55 20 0 220 274 233 287 7.08e-14 73.2
MS.gene97733.t1 AT5G06800 56.364 55 24 0 220 274 194 248 9.38e-14 72.8
MS.gene97733.t1 AT5G06800 56.364 55 24 0 220 274 194 248 9.55e-14 72.8
MS.gene97733.t1 AT2G06020 55.738 61 27 0 220 280 88 148 1.62e-13 71.2
MS.gene97733.t1 AT1G69580 50.877 57 28 0 219 275 35 91 1.02e-12 69.3
MS.gene97733.t1 AT1G69580 50.877 57 28 0 219 275 35 91 1.10e-12 68.9
MS.gene97733.t1 AT3G04030 51.786 56 26 1 219 274 46 100 1.45e-11 65.9
MS.gene97733.t1 AT2G03500 53.448 58 27 0 214 271 229 286 3.61e-11 65.1

Find 82 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCTTCCTTGCTGCTTAA+TGG 0.145751 5.1:-19987465 None:intergenic
ATTAGTTCAAGAACTGATTT+TGG 0.179424 5.1:-19985982 None:intergenic
AAATCCAAATTAGGTTTCTT+TGG 0.203381 5.1:-19990112 None:intergenic
GTGAATTCCAAATCCAAATT+AGG 0.218998 5.1:-19990121 None:intergenic
AAGCCCAAAGAAACCTAATT+TGG 0.224728 5.1:+19990108 MS.gene97733:CDS
ATAAGGAATGTTATGGTCTT+TGG 0.242549 5.1:+19987501 MS.gene97733:CDS
AAACCAAAGGTTGATTCTAT+TGG 0.242636 5.1:+19988654 MS.gene97733:CDS
GTTGTTGTTGGTTTCGTATT+TGG 0.252590 5.1:-19985009 None:intergenic
AAGAAATGGATTTGGGGTTT+TGG 0.258801 5.1:+19985064 MS.gene97733:CDS
AACCAACAACAACAAGTAAT+TGG 0.268823 5.1:+19985019 MS.gene97733:CDS
AAAGAAACCTAATTTGGATT+TGG 0.275662 5.1:+19990114 MS.gene97733:CDS
TTCCAATTACTTGTTGTTGT+TGG 0.279422 5.1:-19985021 None:intergenic
GTTCATGCTGTTGAGCTCTT+AGG 0.283761 5.1:+19985654 MS.gene97733:CDS
GGTGTTGTTGTTGTGGTTGA+TGG 0.297192 5.1:-19985326 None:intergenic
GTCTAAGAAAACCAAGTTCT+TGG 0.298952 5.1:-19985362 None:intergenic
ACAGAAGAAGAAATGGATTT+GGG 0.301557 5.1:+19985057 MS.gene97733:CDS
AAAATCAGTTCTTGAACTAA+TGG 0.321394 5.1:+19985984 MS.gene97733:CDS
AATCATCTTCATATTCTTGA+TGG 0.324988 5.1:+19985468 MS.gene97733:CDS
AACAGAAGAAGAAATGGATT+TGG 0.326435 5.1:+19985056 MS.gene97733:CDS
GAAGATGAAGCATACTTTCA+TGG 0.330340 5.1:-19985680 None:intergenic
ACATGTCAAGTCTCACTTAC+AGG 0.334902 5.1:+19986029 MS.gene97733:CDS
AATCCAAATTAGGTTTCTTT+GGG 0.339574 5.1:-19990111 None:intergenic
TTTGAATCTAAAGGCTTTGT+TGG 0.343931 5.1:-19985174 None:intergenic
TCTTTGGGCTTGATCCTGAT+AGG 0.348645 5.1:-19990096 None:intergenic
CAAGTTCTTGGCTTAAGCTT+TGG 0.365718 5.1:-19985350 None:intergenic
CATCATCACTTTCAAAATAG+TGG 0.367912 5.1:+19985225 MS.gene97733:CDS
CTAATTTGCAAAGACAAATC+TGG 0.371942 5.1:-19984982 None:intergenic
CTCTCATAGCTTAGACACTT+TGG 0.377871 5.1:-19990046 None:intergenic
ATGGTGTTGAAAGAGTGGTT+GGG 0.383264 5.1:-19985307 None:intergenic
TAAACAGGAATTCCTCTAAT+AGG 0.385929 5.1:-19985384 None:intergenic
AACAACAACAGAAGAAGAAA+TGG 0.386085 5.1:+19985050 MS.gene97733:CDS
TGAAGTTGAGGGAATGATAA+AGG 0.400321 5.1:-19985420 None:intergenic
GTCTTTGGAGCAACTCTTCT+CGG 0.404869 5.1:+19987516 MS.gene97733:CDS
AGTTCATCTACAAACCTATC+AGG 0.408228 5.1:+19990082 MS.gene97733:CDS
GTTCTTGGCTTAAGCTTTGG+TGG 0.418363 5.1:-19985347 None:intergenic
TTTCCAATAGAATCAACCTT+TGG 0.420087 5.1:-19988657 None:intergenic
GTATACGACAATGGATCATC+TGG 0.424138 5.1:+19987383 MS.gene97733:CDS
TTTGATGAAAAGATTGATAA+GGG 0.432631 5.1:-19985266 None:intergenic
AATAGGGAAGCTTGGTTACA+TGG 0.432961 5.1:+19988630 MS.gene97733:intron
ATCAAAGCTTGAGATTGAAA+AGG 0.435034 5.1:-19985543 None:intergenic
AAACTCTTTATCATCATCAA+TGG 0.438055 5.1:+19985107 MS.gene97733:CDS
AATCAAGATAAGGAATGTTA+TGG 0.445329 5.1:+19987494 MS.gene97733:CDS
GATGGTGTTGAAAGAGTGGT+TGG 0.452166 5.1:-19985308 None:intergenic
TCAAAGCTTGAGATTGAAAA+GGG 0.452273 5.1:-19985542 None:intergenic
TGGTGTTGAAAGAGTGGTTG+GGG 0.461747 5.1:-19985306 None:intergenic
TTGTTGTTAGAAATAGTAGA+AGG 0.465912 5.1:-19985504 None:intergenic
CAAAGCTTAAGCCAAGAACT+TGG 0.469777 5.1:+19985351 MS.gene97733:CDS
CTTTGGTGGTGTTGTTGTTG+TGG 0.477994 5.1:-19985333 None:intergenic
TGAGGGAATGATAAAGGAGG+AGG 0.480787 5.1:-19985414 None:intergenic
GATTATGATTATGAAGTTGA+GGG 0.482816 5.1:-19985431 None:intergenic
GTAGTAGTCCAACGCATCCT+TGG 0.484429 5.1:-19985615 None:intergenic
TTGGTTGTAATAGGGAAGCT+TGG 0.485851 5.1:+19988622 MS.gene97733:intron
AATCTCAAAGAGGTTGGCCT+AGG 0.496863 5.1:-19990144 None:intergenic
GATAGAGTAGGAGCTTCATC+AGG 0.511299 5.1:+19987223 MS.gene97733:CDS
ATCAAGTGTTAATCAAGATA+AGG 0.511492 5.1:+19987484 MS.gene97733:CDS
TGATTATGATTATGAAGTTG+AGG 0.522631 5.1:-19985432 None:intergenic
TTGGATTTGGAATTCACCCT+AGG 0.535688 5.1:+19990127 MS.gene97733:CDS
GGTTGATGGTGTTGAAAGAG+TGG 0.538405 5.1:-19985312 None:intergenic
TTCAATCTCAAGCTTTGATG+AGG 0.545726 5.1:+19985547 MS.gene97733:CDS
GAGGGAATGATAAAGGAGGA+GGG 0.550824 5.1:-19985413 None:intergenic
TGAGAGCTCCAAGGATGCGT+TGG 0.554044 5.1:+19985607 MS.gene97733:CDS
CATGCTGTTGAGCTCTTAGG+TGG 0.554981 5.1:+19985657 MS.gene97733:CDS
AAAGACAAATCTGGTTGTGC+TGG 0.558095 5.1:-19984973 None:intergenic
TGGAAACATGCAATCTCTTG+AGG 0.562071 5.1:+19988674 MS.gene97733:CDS
GAAAGTGATGATGATGAATG+AGG 0.563655 5.1:-19985215 None:intergenic
GTTGTTGGTTTCGTATTTGG+AGG 0.568986 5.1:-19985006 None:intergenic
CAGAAGAAGAAATGGATTTG+GGG 0.573275 5.1:+19985058 MS.gene97733:CDS
TCTTGAACTAATGGATGTGA+AGG 0.578980 5.1:+19985993 MS.gene97733:CDS
GTGTTGTTGTTTGAATCTAA+AGG 0.580441 5.1:-19985183 None:intergenic
TTGTTGGATTTGAAAGAGAG+AGG 0.584330 5.1:-19985158 None:intergenic
ATCTCAAAGAGGTTGGCCTA+GGG 0.597654 5.1:-19990143 None:intergenic
TTGGTTACATGGTAAACCAA+AGG 0.600087 5.1:+19988641 MS.gene97733:CDS
GGGTGAAATCTCAAAGAGGT+TGG 0.613965 5.1:-19990150 None:intergenic
AGTTGAGGGAATGATAAAGG+AGG 0.618652 5.1:-19985417 None:intergenic
CAATCTGATGTATACGACAA+TGG 0.619241 5.1:+19987374 MS.gene97733:CDS
GTGAAAACTACAGATAGAGT+AGG 0.620063 5.1:+19987211 MS.gene97733:CDS
TTAAATCCAGATGTATCGGA+CGG 0.625352 5.1:+19987189 MS.gene97733:intron
AAAGAAGCATGAGAGCTCCA+AGG 0.647856 5.1:+19985598 MS.gene97733:CDS
GATTTATCCATTAAGCAGCA+AGG 0.648761 5.1:+19987458 MS.gene97733:CDS
AGCTATGAGAGAATATCAGA+TGG 0.655293 5.1:+19990058 MS.gene97733:CDS
GGTGTTGAAAGAGTGGTTGG+GGG 0.661980 5.1:-19985305 None:intergenic
GCTAGGGTGAAATCTCAAAG+AGG 0.685178 5.1:-19990154 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAACAAAATGAT+AGG + chr5.1:19986805-19986824 MS.gene97733:intron 10.0%
!! TTAATGATGTTTAAATTTAT+AGG + chr5.1:19986181-19986200 MS.gene97733:intron 10.0%
!! TTTATATACACAAAAATAAT+TGG + chr5.1:19989339-19989358 MS.gene97733:intron 10.0%
!!! ATTTGATTTTGTAATTTTAA+TGG + chr5.1:19989900-19989919 MS.gene97733:intron 10.0%
!!! CTAATAATATGATTTAATTT+TGG + chr5.1:19987103-19987122 MS.gene97733:intron 10.0%
!!! CTTAAAAATATATTTCTTTT+TGG + chr5.1:19985715-19985734 MS.gene97733:intron 10.0%
!! AAAAAAATATATTCGAATTG+AGG + chr5.1:19986580-19986599 MS.gene97733:intron 15.0%
!! AAAGAATATTTATATGAATG+AGG - chr5.1:19989442-19989461 None:intergenic 15.0%
!! AAGAATATTTATATGAATGA+GGG - chr5.1:19989441-19989460 None:intergenic 15.0%
!! ACAAAAAAGAAAGAAAAAAA+AGG + chr5.1:19988875-19988894 MS.gene97733:intron 15.0%
!! AGTATAAAAAAAAGGATTAT+AGG - chr5.1:19987569-19987588 None:intergenic 15.0%
!! ATATATAGTCATAGAATAAA+TGG + chr5.1:19988442-19988461 MS.gene97733:intron 15.0%
!! ATATTAATTTCAAATTCCAA+TGG + chr5.1:19986239-19986258 MS.gene97733:intron 15.0%
!! GTTAAAGAAAATTAAAACAA+GGG - chr5.1:19985783-19985802 None:intergenic 15.0%
!! TACAAAAAAAAAATGGAAAA+GGG - chr5.1:19989959-19989978 None:intergenic 15.0%
!! TCTATGACTATATATAATAT+AGG - chr5.1:19988437-19988456 None:intergenic 15.0%
!! TGTTAAAGAAAATTAAAACA+AGG - chr5.1:19985784-19985803 None:intergenic 15.0%
!! TTACAAAAAAAAAATGGAAA+AGG - chr5.1:19989960-19989979 None:intergenic 15.0%
!!! ATAACTTTTTTCAAAACAAA+AGG - chr5.1:19988735-19988754 None:intergenic 15.0%
!!! ATTTTTTTAAGGAAGATTTT+TGG - chr5.1:19988252-19988271 None:intergenic 15.0%
!!! GAAATATATTTTTAAGAAAG+TGG - chr5.1:19985711-19985730 None:intergenic 15.0%
!!! GATTTTATATTCTTTTAAGT+TGG - chr5.1:19986388-19986407 None:intergenic 15.0%
!!! TCAATTCGAATATATTTTTT+TGG - chr5.1:19986581-19986600 None:intergenic 15.0%
!! AAAAAGAAAAGCAAAACTTA+AGG - chr5.1:19988566-19988585 None:intergenic 20.0%
!! AAAATACGATTCAAAAGAAA+CGG - chr5.1:19989781-19989800 None:intergenic 20.0%
!! AAAGTAAAAAGCTGTTTATT+AGG - chr5.1:19986351-19986370 None:intergenic 20.0%
!! AAGACAATTAGAAGAAAAAA+GGG + chr5.1:19985816-19985835 MS.gene97733:intron 20.0%
!! AATTAATAACTCTTAACTAG+AGG - chr5.1:19989009-19989028 None:intergenic 20.0%
!! ATATTATTATTACACCATCA+TGG - chr5.1:19988131-19988150 None:intergenic 20.0%
!! ATGATGAGAATATGATTAAA+GGG - chr5.1:19989562-19989581 None:intergenic 20.0%
!! GGAATATATATGATATCAAT+TGG + chr5.1:19988463-19988482 MS.gene97733:intron 20.0%
!! GTAATTAAGCTAGAATAAAA+AGG - chr5.1:19985759-19985778 None:intergenic 20.0%
!! GTTTCAAGATTTCTAATTAT+GGG - chr5.1:19988377-19988396 None:intergenic 20.0%
!! TAGAATAAAAAGGATGATTA+AGG - chr5.1:19985749-19985768 None:intergenic 20.0%
!! TATGATGAGAATATGATTAA+AGG - chr5.1:19989563-19989582 None:intergenic 20.0%
!! TTAAGACAAATTAGAGTTTA+AGG - chr5.1:19986059-19986078 None:intergenic 20.0%
!! TTCTGTCATATATTAATTGT+TGG + chr5.1:19987262-19987281 MS.gene97733:intron 20.0%
!! TTTGATGAAAAGATTGATAA+GGG - chr5.1:19985269-19985288 None:intergenic 20.0%
!!! AATTTTAAATCCAGATGTAT+CGG + chr5.1:19987185-19987204 MS.gene97733:intron 20.0%
!!! CAATCTTTAGAATAAGTAAA+AGG + chr5.1:19988505-19988524 MS.gene97733:intron 20.0%
!!! CTTTTACTTATTCTAAAGAT+TGG - chr5.1:19988507-19988526 None:intergenic 20.0%
!!! GAATATATTTTTTTGGTACT+TGG - chr5.1:19986574-19986593 None:intergenic 20.0%
!!! GAGATATCTCTATTTTTTTA+AGG - chr5.1:19988263-19988282 None:intergenic 20.0%
!!! TACTAATTTTATTAATGGCA+TGG - chr5.1:19986508-19986527 None:intergenic 20.0%
!!! TTATATTCTTTTAAGTTGGA+TGG - chr5.1:19986384-19986403 None:intergenic 20.0%
!!! TTTTATAATATGCATATGCA+TGG - chr5.1:19986944-19986963 None:intergenic 20.0%
!!! TTTTGATGAAAAGATTGATA+AGG - chr5.1:19985270-19985289 None:intergenic 20.0%
! AAAATCAGTTCTTGAACTAA+TGG + chr5.1:19985984-19986003 MS.gene97733:CDS 25.0%
! AAACTCTTTATCATCATCAA+TGG + chr5.1:19985107-19985126 MS.gene97733:CDS 25.0%
! AAAGAAACCTAATTTGGATT+TGG + chr5.1:19990114-19990133 MS.gene97733:CDS 25.0%
! AAATCCAAATTAGGTTTCTT+TGG - chr5.1:19990115-19990134 None:intergenic 25.0%
! AAATTACTGTGAGTATGAAA+GGG - chr5.1:19989524-19989543 None:intergenic 25.0%
! AACGATTTGTGATGTAAAAA+AGG + chr5.1:19988981-19989000 MS.gene97733:intron 25.0%
! AATCAAGATAAGGAATGTTA+TGG + chr5.1:19987494-19987513 MS.gene97733:CDS 25.0%
! AATCATCTTCATATTCTTGA+TGG + chr5.1:19985468-19985487 MS.gene97733:CDS 25.0%
! AATCCAAATTAGGTTTCTTT+GGG - chr5.1:19990114-19990133 None:intergenic 25.0%
! ACTTCTTTCTCAAATTCTTT+AGG + chr5.1:19986716-19986735 MS.gene97733:intron 25.0%
! AGTATATAGTATTAGAGAAC+AGG - chr5.1:19989501-19989520 None:intergenic 25.0%
! AGTCAAAGGTTTAAACTTTA+AGG - chr5.1:19986699-19986718 None:intergenic 25.0%
! ATCAAGTGTTAATCAAGATA+AGG + chr5.1:19987484-19987503 MS.gene97733:CDS 25.0%
! CAAGACAATTAGAAGAAAAA+AGG + chr5.1:19985815-19985834 MS.gene97733:intron 25.0%
! GATTATGATTATGAAGTTGA+GGG - chr5.1:19985434-19985453 None:intergenic 25.0%
! GGTTTCAAGATTTCTAATTA+TGG - chr5.1:19988378-19988397 None:intergenic 25.0%
! GTAAAGAAAGGGAAAAAAAA+AGG - chr5.1:19986887-19986906 None:intergenic 25.0%
! TAAATTACTGTGAGTATGAA+AGG - chr5.1:19989525-19989544 None:intergenic 25.0%
! TATGATTAAAGGGATAAAAG+AGG - chr5.1:19989552-19989571 None:intergenic 25.0%
! TATTTATATGAATGAGGGAA+AGG - chr5.1:19989436-19989455 None:intergenic 25.0%
! TCACATTTACCAATTACAAA+AGG + chr5.1:19988953-19988972 MS.gene97733:intron 25.0%
! TCATTTGACTCAATTATCAA+TGG + chr5.1:19989226-19989245 MS.gene97733:intron 25.0%
! TGATTATGATTATGAAGTTG+AGG - chr5.1:19985435-19985454 None:intergenic 25.0%
! TGTAATTGGTAAATGTGAAA+AGG - chr5.1:19988951-19988970 None:intergenic 25.0%
!! ATTGATAATTGAGTCAAATG+AGG - chr5.1:19989227-19989246 None:intergenic 25.0%
!! CGTTTTTAACCTTTTGTAAT+TGG - chr5.1:19988965-19988984 None:intergenic 25.0%
!! TAAAAGGCATATAAGTAAGA+TGG + chr5.1:19988521-19988540 MS.gene97733:intron 25.0%
!! TCATTTAAAACAACATCGTT+AGG - chr5.1:19987798-19987817 None:intergenic 25.0%
!! TTGCAAGTAACAATTTTACT+TGG + chr5.1:19987025-19987044 MS.gene97733:intron 25.0%
!! TTGTTGTTAGAAATAGTAGA+AGG - chr5.1:19985507-19985526 None:intergenic 25.0%
!! TTTTTGCTTATATTAGTGAC+CGG + chr5.1:19989167-19989186 MS.gene97733:intron 25.0%
!!! AAGGGATTTTTTAGAAGAAA+AGG + chr5.1:19988799-19988818 MS.gene97733:intron 25.0%
!!! AGTTTTGCTTTTCTTTTTCA+TGG + chr5.1:19988568-19988587 MS.gene97733:intron 25.0%
!!! ATATAATATAGGAGCATTCA+TGG - chr5.1:19988426-19988445 None:intergenic 25.0%
!!! ATCTAATACAGAAGCATTTA+TGG - chr5.1:19986973-19986992 None:intergenic 25.0%
!!! ATTAGTTCAAGAACTGATTT+TGG - chr5.1:19985985-19986004 None:intergenic 25.0%
!!! CTTAACCTTTGGAATATAAA+GGG - chr5.1:19988712-19988731 None:intergenic 25.0%
!!! TTAACCTTTGGAATATAAAG+GGG - chr5.1:19988711-19988730 None:intergenic 25.0%
!!! TTGTTATTTGCTTTTTCAGA+AGG + chr5.1:19990015-19990034 MS.gene97733:intron 25.0%
AAAAATGGAAAAGGGAGAAA+TGG - chr5.1:19989951-19989970 None:intergenic 30.0%
AAAACAAAAGGCTTAACCTT+TGG - chr5.1:19988723-19988742 None:intergenic 30.0%
AAACATTATACCATTCATGC+AGG - chr5.1:19989321-19989340 None:intergenic 30.0%
AACAACAACAGAAGAAGAAA+TGG + chr5.1:19985050-19985069 MS.gene97733:CDS 30.0%
AACCAACAACAACAAGTAAT+TGG + chr5.1:19985019-19985038 MS.gene97733:CDS 30.0%
AACGAGATATAGTTGCAATA+TGG - chr5.1:19987764-19987783 None:intergenic 30.0%
AAGAGATCATTGAGTAATGA+TGG - chr5.1:19986852-19986871 None:intergenic 30.0%
AATCCTATATAAATGCTGTG+TGG + chr5.1:19989637-19989656 MS.gene97733:intron 30.0%
AGAAATATTCTCTCTGTGTT+TGG + chr5.1:19988603-19988622 MS.gene97733:intron 30.0%
ATAAGGAATGTTATGGTCTT+TGG + chr5.1:19987501-19987520 MS.gene97733:CDS 30.0%
ATAGAGATATCTCTTTCCTT+AGG + chr5.1:19988270-19988289 MS.gene97733:intron 30.0%
ATCAAAGCTTGAGATTGAAA+AGG - chr5.1:19985546-19985565 None:intergenic 30.0%
CAAATTTCAAAGCATGTGTT+TGG + chr5.1:19988767-19988786 MS.gene97733:intron 30.0%
CATCATCACTTTCAAAATAG+TGG + chr5.1:19985225-19985244 MS.gene97733:CDS 30.0%
CTAACCATTTGAATTTGTGA+AGG - chr5.1:19988922-19988941 None:intergenic 30.0%
CTCTCATTACTCATAGTAAA+AGG - chr5.1:19989614-19989633 None:intergenic 30.0%
GAATTTGAGAAAGAAGTCAA+AGG - chr5.1:19986713-19986732 None:intergenic 30.0%
GTGAATTCCAAATCCAAATT+AGG - chr5.1:19990124-19990143 None:intergenic 30.0%
TAAACAGGAATTCCTCTAAT+AGG - chr5.1:19985387-19985406 None:intergenic 30.0%
TAATATATACTCTCTTCCAG+TGG + chr5.1:19988145-19988164 MS.gene97733:intron 30.0%
TATACTCTCTCAAAATCCAA+CGG - chr5.1:19987689-19987708 None:intergenic 30.0%
TATTGCCATGCACATTATTA+TGG + chr5.1:19988843-19988862 MS.gene97733:intron 30.0%
TCAAAGCTTGAGATTGAAAA+GGG - chr5.1:19985545-19985564 None:intergenic 30.0%
TTCAAAGGGAATATTTGCTT+TGG - chr5.1:19988399-19988418 None:intergenic 30.0%
TTCTAATTATGGGACTACAA+GGG - chr5.1:19988367-19988386 None:intergenic 30.0%
TTCTTTAGTCAGATTGAAGA+TGG + chr5.1:19986140-19986159 MS.gene97733:intron 30.0%
TTGTCCTTCACAAATTCAAA+TGG + chr5.1:19988915-19988934 MS.gene97733:intron 30.0%
TTTCCAATAGAATCAACCTT+TGG - chr5.1:19988660-19988679 None:intergenic 30.0%
TTTCTAATTATGGGACTACA+AGG - chr5.1:19988368-19988387 None:intergenic 30.0%
! AAACCAAAGGTTGATTCTAT+TGG + chr5.1:19988654-19988673 MS.gene97733:CDS 30.0%
! AACAGAAGAAGAAATGGATT+TGG + chr5.1:19985056-19985075 MS.gene97733:CDS 30.0%
! ACAGAAGAAGAAATGGATTT+GGG + chr5.1:19985057-19985076 MS.gene97733:CDS 30.0%
! ATCGATTTCTGAAAACAAGT+AGG + chr5.1:19986429-19986448 MS.gene97733:intron 30.0%
! CAAGTAACAATTTTACTTGG+AGG + chr5.1:19987028-19987047 MS.gene97733:intron 30.0%
! CTAATTTGCAAAGACAAATC+TGG - chr5.1:19984985-19985004 None:intergenic 30.0%
! CTTTTGCTTATATTAGTGAC+CGG - chr5.1:19989058-19989077 None:intergenic 30.0%
! TATTACACCATCATGGATTT+TGG - chr5.1:19988124-19988143 None:intergenic 30.0%
! TTTGAATCTAAAGGCTTTGT+TGG - chr5.1:19985177-19985196 None:intergenic 30.0%
!! GCTTAACCTTTGGAATATAA+AGG - chr5.1:19988713-19988732 None:intergenic 30.0%
!! GTGTTGTTGTTTGAATCTAA+AGG - chr5.1:19985186-19985205 None:intergenic 30.0%
!! GTGTTTGAATGTTTGCTATA+GGG + chr5.1:19985953-19985972 MS.gene97733:intron 30.0%
!! TAACCTTTGGAATATAAAGG+GGG - chr5.1:19988710-19988729 None:intergenic 30.0%
!! TACAGAAGCATTTATGGTTA+TGG - chr5.1:19986967-19986986 None:intergenic 30.0%
!! TGTTTGAATGTTTGCTATAG+GGG + chr5.1:19985954-19985973 MS.gene97733:intron 30.0%
!! TTCCAATTACTTGTTGTTGT+TGG - chr5.1:19985024-19985043 None:intergenic 30.0%
!!! TTTGCTTTTTCAGAAGGAAA+TGG + chr5.1:19990021-19990040 MS.gene97733:intron 30.0%
!!! TTTTTTCCCTTTCTTTACCA+TGG + chr5.1:19986889-19986908 MS.gene97733:intron 30.0%
AAAACAACATCGTTAGGCTT+TGG - chr5.1:19987792-19987811 None:intergenic 35.0%
AAACATTAGGCTCTTGTATG+GGG + chr5.1:19988307-19988326 MS.gene97733:intron 35.0%
AAATGAGGCAGGTTTAATAG+GGG - chr5.1:19989212-19989231 None:intergenic 35.0%
AAGATGGTACGATTCTGATT+GGG + chr5.1:19986156-19986175 MS.gene97733:intron 35.0%
AAGCCCAAAGAAACCTAATT+TGG + chr5.1:19990108-19990127 MS.gene97733:CDS 35.0%
AATTCAACGTGTTGTCGAAT+AGG - chr5.1:19989816-19989835 None:intergenic 35.0%
AGCATTCATGGAAGTTTCAA+AGG - chr5.1:19988414-19988433 None:intergenic 35.0%
AGCTATGAGAGAATATCAGA+TGG + chr5.1:19990058-19990077 MS.gene97733:CDS 35.0%
AGTTCATCTACAAACCTATC+AGG + chr5.1:19990082-19990101 MS.gene97733:CDS 35.0%
ATAATTGAGTCAAATGAGGC+AGG - chr5.1:19989223-19989242 None:intergenic 35.0%
ATAGGCTACATGTACATTAG+AGG + chr5.1:19986199-19986218 MS.gene97733:intron 35.0%
ATTCCTATATAACCATCGCA+TGG - chr5.1:19989740-19989759 None:intergenic 35.0%
ATTGAGAGAAACCCTTTCTA+AGG - chr5.1:19986268-19986287 None:intergenic 35.0%
ATTTATACTCACCTGACAAG+TGG + chr5.1:19987844-19987863 MS.gene97733:intron 35.0%
CAAACATTAGGCTCTTGTAT+GGG + chr5.1:19988306-19988325 MS.gene97733:intron 35.0%
CAAATGAGGCAGGTTTAATA+GGG - chr5.1:19989213-19989232 None:intergenic 35.0%
CAATCTGATGTATACGACAA+TGG + chr5.1:19987374-19987393 MS.gene97733:CDS 35.0%
CACTAAGTTTCTCATCTGTT+GGG - chr5.1:19988333-19988352 None:intergenic 35.0%
CATCTCCATAATAATGTGCA+TGG - chr5.1:19988851-19988870 None:intergenic 35.0%
CTCCCTTAAACCATGAAATA+GGG + chr5.1:19987351-19987370 MS.gene97733:intron 35.0%
CTCTGTGTTTGGTTGTAATA+GGG + chr5.1:19988614-19988633 MS.gene97733:intron 35.0%
CTTGTCAGGTGAGTATAAAT+AGG - chr5.1:19987844-19987863 None:intergenic 35.0%
GAAGATGAAGCATACTTTCA+TGG - chr5.1:19985683-19985702 None:intergenic 35.0%
GATTTATCCATTAAGCAGCA+AGG + chr5.1:19987458-19987477 MS.gene97733:CDS 35.0%
GCATTCATGGAAGTTTCAAA+GGG - chr5.1:19988413-19988432 None:intergenic 35.0%
GTCTAAGAAAACCAAGTTCT+TGG - chr5.1:19985365-19985384 None:intergenic 35.0%
GTGAAAACTACAGATAGAGT+AGG + chr5.1:19987211-19987230 MS.gene97733:CDS 35.0%
GTTCTATTATATACACCCTC+CGG - chr5.1:19989189-19989208 None:intergenic 35.0%
TAGAGGAAGCAATTAAGTGA+TGG + chr5.1:19986216-19986235 MS.gene97733:intron 35.0%
TAGTATTAGAGAACAGGTAG+AGG - chr5.1:19989495-19989514 None:intergenic 35.0%
TCAAACATTAGGCTCTTGTA+TGG + chr5.1:19988305-19988324 MS.gene97733:intron 35.0%
TCAAATGAGGCAGGTTTAAT+AGG - chr5.1:19989214-19989233 None:intergenic 35.0%
TCCAATGGTTTCCTTAGAAA+GGG + chr5.1:19986254-19986273 MS.gene97733:intron 35.0%
TCTCCCTTAAACCATGAAAT+AGG + chr5.1:19987350-19987369 MS.gene97733:intron 35.0%
TCTCTGTGTTTGGTTGTAAT+AGG + chr5.1:19988613-19988632 MS.gene97733:intron 35.0%
TCTGAAAACAAGTAGGACAA+AGG + chr5.1:19986436-19986455 MS.gene97733:intron 35.0%
TGAAGTTGAGGGAATGATAA+AGG - chr5.1:19985423-19985442 None:intergenic 35.0%
TGCCCTATTTCATGGTTTAA+GGG - chr5.1:19987356-19987375 None:intergenic 35.0%
TTAAATCCAGATGTATCGGA+CGG + chr5.1:19987189-19987208 MS.gene97733:intron 35.0%
TTCCAATGGTTTCCTTAGAA+AGG + chr5.1:19986253-19986272 MS.gene97733:intron 35.0%
TTGCCCTATTTCATGGTTTA+AGG - chr5.1:19987357-19987376 None:intergenic 35.0%
TTGGTTACATGGTAAACCAA+AGG + chr5.1:19988641-19988660 MS.gene97733:CDS 35.0%
TTGTTGGATTTGAAAGAGAG+AGG - chr5.1:19985161-19985180 None:intergenic 35.0%
TTTATACTCACCTGACAAGT+GGG + chr5.1:19987845-19987864 MS.gene97733:intron 35.0%
! AACTATGAGGTAGTTTGTCT+TGG - chr5.1:19986481-19986500 None:intergenic 35.0%
! AGGGAAAGGAAATTTGAGAT+GGG - chr5.1:19989422-19989441 None:intergenic 35.0%
! ATGTGTTTGGAATGCATGAA+AGG + chr5.1:19988780-19988799 MS.gene97733:intron 35.0%
! CAGAAGAAGAAATGGATTTG+GGG + chr5.1:19985058-19985077 MS.gene97733:CDS 35.0%
! CATTGAGTAATGATGGTGTT+TGG - chr5.1:19986845-19986864 None:intergenic 35.0%
! CTACTACTTCTTTGAAGAGT+AGG - chr5.1:19988215-19988234 None:intergenic 35.0%
! CTCTTTCCTTAGGATTTTGT+GGG + chr5.1:19988280-19988299 MS.gene97733:intron 35.0%
! GAAAGTGATGATGATGAATG+AGG - chr5.1:19985218-19985237 None:intergenic 35.0%
! GGTTTTCTTAGACCTATTAG+AGG + chr5.1:19985372-19985391 MS.gene97733:CDS 35.0%
! TCTCTTTCCTTAGGATTTTG+TGG + chr5.1:19988279-19988298 MS.gene97733:intron 35.0%
! TCTTGAACTAATGGATGTGA+AGG + chr5.1:19985993-19986012 MS.gene97733:CDS 35.0%
! TCTTTCCTTAGGATTTTGTG+GGG + chr5.1:19988281-19988300 MS.gene97733:intron 35.0%
! TGTGTTTGGAATGCATGAAA+GGG + chr5.1:19988781-19988800 MS.gene97733:intron 35.0%
! TTCAATCTCAAGCTTTGATG+AGG + chr5.1:19985547-19985566 MS.gene97733:CDS 35.0%
! TTTACTTCCTTTTGAACCAC+TGG - chr5.1:19988164-19988183 None:intergenic 35.0%
! TTTTGTGGGGTTCAAACATT+AGG + chr5.1:19988294-19988313 MS.gene97733:intron 35.0%
!! AACCTTTGGAATATAAAGGG+GGG - chr5.1:19988709-19988728 None:intergenic 35.0%
!! AAGAAATGGATTTGGGGTTT+TGG + chr5.1:19985064-19985083 MS.gene97733:CDS 35.0%
!! GGGTGTAGTCATTTTCAATA+TGG - chr5.1:19989034-19989053 None:intergenic 35.0%
!! GGTGTTTGAATGTTTGCTAT+AGG + chr5.1:19985952-19985971 MS.gene97733:intron 35.0%
!! GTTGTTGTTGGTTTCGTATT+TGG - chr5.1:19985012-19985031 None:intergenic 35.0%
AAAGACAAATCTGGTTGTGC+TGG - chr5.1:19984976-19984995 None:intergenic 40.0%
AAAGCTGCCATGGTAAAGAA+AGG - chr5.1:19986899-19986918 None:intergenic 40.0%
AAGCTGCCATGGTAAAGAAA+GGG - chr5.1:19986898-19986917 None:intergenic 40.0%
AATAGGGAAGCTTGGTTACA+TGG + chr5.1:19988630-19988649 MS.gene97733:intron 40.0%
AATGAGGCAGGTTTAATAGG+GGG - chr5.1:19989211-19989230 None:intergenic 40.0%
ACATGTCAAGTCTCACTTAC+AGG + chr5.1:19986029-19986048 MS.gene97733:CDS 40.0%
AGAACAGGTAGAGGAATCAA+AGG - chr5.1:19989486-19989505 None:intergenic 40.0%
AGTTGAGGGAATGATAAAGG+AGG - chr5.1:19985420-19985439 None:intergenic 40.0%
CAAAAGAATTCCCACTTGTC+AGG - chr5.1:19987858-19987877 None:intergenic 40.0%
CAAAGCTTAAGCCAAGAACT+TGG + chr5.1:19985351-19985370 MS.gene97733:CDS 40.0%
CAAGTTCTTGGCTTAAGCTT+TGG - chr5.1:19985353-19985372 None:intergenic 40.0%
CATCAGATTGCCCTATTTCA+TGG - chr5.1:19987364-19987383 None:intergenic 40.0%
CATGCAAGTTCTATAGCACT+TGG + chr5.1:19989379-19989398 MS.gene97733:intron 40.0%
CTCTCATAGCTTAGACACTT+TGG - chr5.1:19990049-19990068 None:intergenic 40.0%
GAACCATGCGATGGTTATAT+AGG + chr5.1:19989734-19989753 MS.gene97733:intron 40.0%
GAAGATGGTACGATTCTGAT+TGG + chr5.1:19986155-19986174 MS.gene97733:intron 40.0%
GAGGGAAAGGAAATTTGAGA+TGG - chr5.1:19989423-19989442 None:intergenic 40.0%
GCACTAAGTTTCTCATCTGT+TGG - chr5.1:19988334-19988353 None:intergenic 40.0%
GCTCCACACAGCATTTATAT+AGG - chr5.1:19989643-19989662 None:intergenic 40.0%
GTATACGACAATGGATCATC+TGG + chr5.1:19987383-19987402 MS.gene97733:CDS 40.0%
TCTAGCGCAAATGGCTAATA+TGG + chr5.1:19986603-19986622 MS.gene97733:intron 40.0%
TGAGCATCCAAAATCCATGA+TGG + chr5.1:19988114-19988133 MS.gene97733:intron 40.0%
TGCTTATATTAGTGACCGGA+GGG + chr5.1:19989171-19989190 MS.gene97733:intron 40.0%
TGCTTATATTAGTGACCGGA+GGG - chr5.1:19989190-19989171 None:intergenic 40.0%
TGGAAACATGCAATCTCTTG+AGG + chr5.1:19988674-19988693 MS.gene97733:CDS 40.0%
TTCCCCCCTTTATATTCCAA+AGG + chr5.1:19988704-19988723 MS.gene97733:intron 40.0%
TTGAAAATGACTACACCCTC+CGG + chr5.1:19989036-19989055 MS.gene97733:intron 40.0%
TTGAACCCCACAAAATCCTA+AGG - chr5.1:19988289-19988308 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG + chr5.1:19989170-19989189 MS.gene97733:intron 40.0%
TTGCTTATATTAGTGACCGG+AGG - chr5.1:19989189-19989170 None:intergenic 40.0%
TTGGTTGTAATAGGGAAGCT+TGG + chr5.1:19988622-19988641 MS.gene97733:intron 40.0%
! ACCCTTTCTAAGGAAACCAT+TGG - chr5.1:19986258-19986277 None:intergenic 40.0%
! ATGGTGTTGAAAGAGTGGTT+GGG - chr5.1:19985310-19985329 None:intergenic 40.0%
! ATTAGGTTGCAGAAGAAGCA+GGG - chr5.1:19986334-19986353 None:intergenic 40.0%
! CTCTCATGCTTCTTTTTGCT+GGG - chr5.1:19985593-19985612 None:intergenic 40.0%
! CTTTAACCATGGTTAGTCAC+AGG + chr5.1:19986915-19986934 MS.gene97733:intron 40.0%
! GGGAAAGGAAATTTGAGATG+GGG - chr5.1:19989421-19989440 None:intergenic 40.0%
! TATTAGGTTGCAGAAGAAGC+AGG - chr5.1:19986335-19986354 None:intergenic 40.0%
! TCATGGATTTTGGATGCTCA+TGG - chr5.1:19988114-19988133 None:intergenic 40.0%
! TGATCTTCCTTGCTGCTTAA+TGG - chr5.1:19987468-19987487 None:intergenic 40.0%
! TTGGATTTGGAATTCACCCT+AGG + chr5.1:19990127-19990146 MS.gene97733:CDS 40.0%
! TTTTGGATGCTCATGGTTTG+TGG - chr5.1:19988107-19988126 None:intergenic 40.0%
!! GTTGTTGGTTTCGTATTTGG+AGG - chr5.1:19985009-19985028 None:intergenic 40.0%
AACCATGGTTAAAGCTGCCA+TGG - chr5.1:19986909-19986928 None:intergenic 45.0%
AATACACACGCCTGCATGAA+TGG + chr5.1:19989308-19989327 MS.gene97733:intron 45.0%
AGCTGTATTTGCAGAACCGT+TGG + chr5.1:19987670-19987689 MS.gene97733:intron 45.0%
ATAAATGCTGTGTGGAGCAG+TGG + chr5.1:19989645-19989664 MS.gene97733:intron 45.0%
ATAACCATCGCATGGTTCAG+TGG - chr5.1:19989732-19989751 None:intergenic 45.0%
ATGGCATGGACAGAACTATG+AGG - chr5.1:19986494-19986513 None:intergenic 45.0%
CAAGTTCTATAGCACTTGGC+AGG + chr5.1:19989383-19989402 MS.gene97733:intron 45.0%
CCTAACCATGTTTGCATGTG+AGG - chr5.1:19988026-19988045 None:intergenic 45.0%
CCTCACATGCAAACATGGTT+AGG + chr5.1:19988023-19988042 MS.gene97733:intron 45.0%
CTCAACCTCACATGCAAACA+TGG + chr5.1:19988018-19988037 MS.gene97733:intron 45.0%
CTCTCTTCCAGTGGTTCAAA+AGG + chr5.1:19988154-19988173 MS.gene97733:intron 45.0%
GAATTGAGGTCTAGCGCAAA+TGG + chr5.1:19986594-19986613 MS.gene97733:intron 45.0%
GAGGGAATGATAAAGGAGGA+GGG - chr5.1:19985416-19985435 None:intergenic 45.0%
GATAGAGTAGGAGCTTCATC+AGG + chr5.1:19987223-19987242 MS.gene97733:CDS 45.0%
GTGTTTCAGTTGCAAGTTGC+AGG - chr5.1:19987742-19987761 None:intergenic 45.0%
GTTCATGCTGTTGAGCTCTT+AGG + chr5.1:19985654-19985673 MS.gene97733:CDS 45.0%
TCAGTGGCTCGTAGAATCAT+TGG - chr5.1:19989716-19989735 None:intergenic 45.0%
TCTTTGGGCTTGATCCTGAT+AGG - chr5.1:19990099-19990118 None:intergenic 45.0%
TGAGGGAATGATAAAGGAGG+AGG - chr5.1:19985417-19985436 None:intergenic 45.0%
TGAGTGAGTGATCAAGAGAG+AGG - chr5.1:19988002-19988021 None:intergenic 45.0%
! AAAGAAGCATGAGAGCTCCA+AGG + chr5.1:19985598-19985617 MS.gene97733:CDS 45.0%
! ATAGCACTTGGCAGGCTTTT+AGG + chr5.1:19989391-19989410 MS.gene97733:intron 45.0%
! GAGGTAGTTTGTCTTGGCTT+GGG - chr5.1:19986475-19986494 None:intergenic 45.0%
! GATGGTGTTGAAAGAGTGGT+TGG - chr5.1:19985311-19985330 None:intergenic 45.0%
! GCTCTCATGCTTCTTTTTGC+TGG - chr5.1:19985594-19985613 None:intergenic 45.0%
! GTTCTTGGCTTAAGCTTTGG+TGG - chr5.1:19985350-19985369 None:intergenic 45.0%
! TACCATGGCAGCTTTAACCA+TGG + chr5.1:19986904-19986923 MS.gene97733:intron 45.0%
! TGAGGTAGTTTGTCTTGGCT+TGG - chr5.1:19986476-19986495 None:intergenic 45.0%
! TGGTGTTGAAAGAGTGGTTG+GGG - chr5.1:19985309-19985328 None:intergenic 45.0%
! TTTTCACCGTCCGATACATC+TGG - chr5.1:19987198-19987217 None:intergenic 45.0%
!! CTTTGGTGGTGTTGTTGTTG+TGG - chr5.1:19985336-19985355 None:intergenic 45.0%
!! GGAGGAGGGTTTTGATAAAC+AGG - chr5.1:19985402-19985421 None:intergenic 45.0%
!! GGTGTTGTTGTTGTGGTTGA+TGG - chr5.1:19985329-19985348 None:intergenic 45.0%
!! GGTTGATGGTGTTGAAAGAG+TGG - chr5.1:19985315-19985334 None:intergenic 45.0%
!! GTCTTTGGAGCAACTCTTCT+CGG + chr5.1:19987516-19987535 MS.gene97733:CDS 45.0%
!!! GGGGTTTTGGAAAAGAGCTT+TGG + chr5.1:19985077-19985096 MS.gene97733:CDS 45.0%
!! AAAAAAATAGTATAAAAAAA+AGG - chr5.1:19987577-19987596 None:intergenic 5.0%
!! AAATAAATAAGTAAATAAAA+AGG - chr5.1:19985866-19985885 None:intergenic 5.0%
!!! AAATTTTTATTAAAAATGAT+AGG + chr5.1:19987608-19987627 MS.gene97733:intron 5.0%
!!! AATTATTATTATTTTTTCTA+TGG + chr5.1:19985931-19985950 MS.gene97733:intron 5.0%
!!! ATTATTACTAATTTTATTAA+TGG - chr5.1:19986513-19986532 None:intergenic 5.0%
!!! ATTTTATTACAAAAAAAAAA+TGG - chr5.1:19989966-19989985 None:intergenic 5.0%
!!! CTAATTTTTTTTTTTTTTAT+CGG - chr5.1:19986675-19986694 None:intergenic 5.0%
CATGCTGTTGAGCTCTTAGG+TGG + chr5.1:19985657-19985676 MS.gene97733:CDS 50.0%
GGACTACAAGGGCTTAGCTT+TGG - chr5.1:19988356-19988375 None:intergenic 50.0%
GTAGTAGTCCAACGCATCCT+TGG - chr5.1:19985618-19985637 None:intergenic 50.0%
GTTGCAAGTTGCAGGAACGT+TGG - chr5.1:19987734-19987753 None:intergenic 50.0%
TGGAAGCCTGTGACTAACCA+TGG - chr5.1:19986924-19986943 None:intergenic 50.0%
! GGTGTTGAAAGAGTGGTTGG+GGG - chr5.1:19985308-19985327 None:intergenic 50.0%
GTTGCAGAAGAAGCAGGGAG+AGG - chr5.1:19986329-19986348 None:intergenic 55.0%
TGAGAGCTCCAAGGATGCGT+TGG + chr5.1:19985607-19985626 MS.gene97733:CDS 55.0%
CGAGCCACTGAACCATGCGA+TGG + chr5.1:19989725-19989744 MS.gene97733:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 19984961 19990162 19984961 ID=MS.gene97733
chr5.1 mRNA 19984961 19990162 19984961 ID=MS.gene97733.t1;Parent=MS.gene97733
chr5.1 exon 19984961 19985687 19984961 ID=MS.gene97733.t1.exon1;Parent=MS.gene97733.t1
chr5.1 CDS 19984961 19985687 19984961 ID=cds.MS.gene97733.t1;Parent=MS.gene97733.t1
chr5.1 exon 19985974 19986050 19985974 ID=MS.gene97733.t1.exon2;Parent=MS.gene97733.t1
chr5.1 CDS 19985974 19986050 19985974 ID=cds.MS.gene97733.t1;Parent=MS.gene97733.t1
chr5.1 exon 19987199 19987244 19987199 ID=MS.gene97733.t1.exon3;Parent=MS.gene97733.t1
chr5.1 CDS 19987199 19987244 19987199 ID=cds.MS.gene97733.t1;Parent=MS.gene97733.t1
chr5.1 exon 19987372 19987537 19987372 ID=MS.gene97733.t1.exon4;Parent=MS.gene97733.t1
chr5.1 CDS 19987372 19987537 19987372 ID=cds.MS.gene97733.t1;Parent=MS.gene97733.t1
chr5.1 exon 19988635 19988695 19988635 ID=MS.gene97733.t1.exon5;Parent=MS.gene97733.t1
chr5.1 CDS 19988635 19988695 19988635 ID=cds.MS.gene97733.t1;Parent=MS.gene97733.t1
chr5.1 exon 19990034 19990162 19990034 ID=MS.gene97733.t1.exon6;Parent=MS.gene97733.t1
chr5.1 CDS 19990034 19990162 19990034 ID=cds.MS.gene97733.t1;Parent=MS.gene97733.t1
Gene Sequence

>MS.gene97733

ATGGAGCTATTTCCAGCACAACCAGATTTGTCTTTGCAAATTAGTCCTCCAAATACGAAACCAACAACAACAAGTAATTGGAAGAGAACAACAACAACAGAAGAAGAAATGGATTTGGGGTTTTGGAAAAGAGCTTTGGATTCAAGAAACTCTTTATCATCATCAATGGCTTCTAAAACTGATAATTACTCTTTTGACCTCTCTCTTTCAAATCCAACAAAGCCTTTAGATTCAAACAACAACACTTCAAATAACCTCATTCATCATCATCACTTTCAAAATAGTGGAAATAATAATGCAAACAACCCTTATCAATCTTTTCATCAAAATCATTACTTTCAACACCCCCAACCACTCTTTCAACACCATCAACCACAACAACAACACCACCAAAGCTTAAGCCAAGAACTTGGTTTTCTTAGACCTATTAGAGGAATTCCTGTTTATCAAAACCCTCCTCCTTTATCATTCCCTCAACTTCATAATCATAATCATAATCATAATCTAAATCATCTTCATATTCTTGATGGTGCTACTACTACACCTTCTACTATTTCTAACAACAACAACACAAGTTCAAGCCCTTTTCAATCTCAAGCTTTGATGAGGTCAAGATTCTTGTCAAGATTCCCAGCAAAAAGAAGCATGAGAGCTCCAAGGATGCGTTGGACTACTACACTTCATGCTCGATTTGTTCATGCTGTTGAGCTCTTAGGTGGCCATGAAAGTATGCTTCATCTTCAATTTCCACTTTCTTAAAAATATATTTCTTTTTGGTTAATTTTCCTTAATCATCCTTTTTATTCTAGCTTAATTACACCCTTGTTTTAATTTTCTTTAACATGAAAATTTAACAAGACAATTAGAAGAAAAAAGGGTGTGAAACTTAGAAAGAGAATTTTCCTTTTTATTTACTTATTTATTTATTTTTAATTTGACTATGATATAAATTTGATTTTTTTTCTTAACTAATTATTATTATTTTTTCTATGGTGTTTGAATGTTTGCTATAGGGGCTACTCCAAAATCAGTTCTTGAACTAATGGATGTGAAGGATCTTACATTAGCACATGTCAAGTCTCACTTACAGGTAAACCTTAAACTCTAATTTGTCTTAATTGCATTTTGTTTATAAATAAATAATCTATCTTACTATTAAATAATTTTTTCATTGTTAAATTCTTTAGTCAGATTGAAGATGGTACGATTCTGATTGGGATTTAATGATGTTTAAATTTATAGGCTACATGTACATTAGAGGAAGCAATTAAGTGATGGATATTAATTTCAAATTCCAATGGTTTCCTTAGAAAGGGTTTCTCTCAATCAAATACTTTGTGCTTCTTTTTTCTATTAGATCTGCTGCCTCTCCCTGCTTCTTCTGCAACCTAATAAACAGCTTTTTACTTTGAAGAATGAACCATCCAACTTAAAAGAATATAAAATCTAGAAAGAGAAAGAAGTACTTATCGATTTCTGAAAACAAGTAGGACAAAGGCTTATGAATCTCACCCAAGCCAAGACAAACTACCTCATAGTTCTGTCCATGCCATTAATAAAATTAGTAATAATATACTTATTTATTTTTCTTGTAAGAAATTATATTAGTACCAAGTACCAAAAAAATATATTCGAATTGAGGTCTAGCGCAAATGGCTAATATGGAGTGTACGAATGTTATAAACAAATAAGATATCGAGTTTAATTTCTACCGATAAAAAAAAAAAAAATTAGACCTTAAAGTTTAAACCTTTGACTTCTTTCTCAAATTCTTTAGGATGTCTCACTTAAGACAATAGAAATATGCATATATCAATATAATTAAATTGAAGTAAAAAATTAAAAAAAAAAAAAACAAAATGATAGGTTAGCATGCATGTACCAAACACCATCATTACTCAATGATCTCTTCATGCAATATGACCTTTTTTTTTCCCTTTCTTTACCATGGCAGCTTTAACCATGGTTAGTCACAGGCTTCCATGCATATGCATATTATAAAACCATAACCATAAATGCTTCTGTATTAGATCTTGTACTCTACTGCATATATCAATTTAATACTTGCAAGTAACAATTTTACTTGGAGGACATTAATTTCTTATTCTTGCTGCAAACTTCTTTAATTTGTTTCATTTGTTACTAATAATATGATTTAATTTTGGAAGCATATTTTTTTTTTTATAAAAATTTACTTTATTCTAGCTAATGTTAATGATATGTTAATTTTAAATCCAGATGTATCGGACGGTGAAAACTACAGATAGAGTAGGAGCTTCATCAGGTTAGTTCAAATTTTCATTCTGTCATATATTAATTGTTGGAAGATTAATGAAGACTATTATGTTAATAGATAATTAACTTGCTCTTCTTTTTTCTTTTTCTTTTTTCTCCCTTAAACCATGAAATAGGGCAATCTGATGTATACGACAATGGATCATCTGGAGATAATTCTGATGACATAATGTTTGACATCAACTCTTCAAGAAGATCATCTGATTTATCCATTAAGCAGCAAGGAAGATCAAGTGTTAATCAAGATAAGGAATGTTATGGTCTTTGGAGCAACTCTTCTCGGTAATGCTTCTAAATCTAGTTAATTGTACCTATAATCCTTTTTTTTATACTATTTTTTTTAACAACAAAGAAATTTTTATTAAAAATGATAGGAATAAGTACAATAAATTTTTCATTAGATAGATACTGTACAGCTGTATTTGCAGAACCGTTGGATTTTGAGAGAGTATAATCTTAATTTATCTCTCTGAATCCAACGTTCCTGCAACTTGCAACTGAAACACCATATTGCAACTATATCTCGTTCGTCTCCAAAGCCTAACGATGTTGTTTTAAATGATTAATATTGAAAACTCATAGACACCTATTTATACTCACCTGACAAGTGGGAATTCTTTTGTCATGTTTTTTAAAATATTTATATTTTGTACTATGTTTTTGCAAGTCATGCATATACTAATATAAATAAAACGATTGCATGCATGTCTTATTCATAGACACATTTCTTTGTTCTTTTCTTTCCTCTCTCTTGATCACTCACTCAACCTCACATGCAAACATGGTTAGGCTCAAAAATTCACAAAAAAGAATAAATCATTTCATTAGTTTGCTTTGTTTATGTCTGTCCACAAACCATGAGCATCCAAAATCCATGATGGTGTAATAATAATATATACTCTCTTCCAGTGGTTCAAAAGGAAGTAAAAAAAAAGTTACACACACACACACACACTCCTACTCTTCAAAGAAGTAGTAGTATTTTGTTATTTTCCAAAAATCTTCCTTAAAAAAATAGAGATATCTCTTTCCTTAGGATTTTGTGGGGTTCAAACATTAGGCTCTTGTATGGGGCCCAACAGATGAGAAACTTAGTGCCAAAGCTAAGCCCTTGTAGTCCCATAATTAGAAATCTTGAAACCAAAGCAAATATTCCCTTTGAAACTTCCATGAATGCTCCTATATTATATATAGTCATAGAATAAATGGAATATATATGATATCAATTGGACTAGCATAAACTTTATTCCAATCTTTAGAATAAGTAAAAGGCATATAAGTAAGATGGTAAAAAGATGAATTTCTTTCCTTAAGTTTTGCTTTTCTTTTTCATGGCTTCAAGTAATGAGAAATATTCTCTCTGTGTTTGGTTGTAATAGGGAAGCTTGGTTACATGGTAAACCAAAGGTTGATTCTATTGGAAACATGCAATCTCTTGAGGTAATATATTCCCCCCTTTATATTCCAAAGGTTAAGCCTTTTGTTTTGAAAAAAGTTATTAAAATTATATACAAATTTCAAAGCATGTGTTTGGAATGCATGAAAGGGATTTTTTAGAAGAAAAGGAAATACGTTTGATCTTTTTCATATTGCCATGCACATTATTATGGAGATGAATGACAAAAAAGAAAGAAAAAAAAGGCTTTGCATAAAGCTGCTTTGTCCTTCACAAATTCAAATGGTTAGACTAGTCCTTTTCACATTTACCAATTACAAAAGGTTAAAAACGATTTGTGATGTAAAAAAGGTTCCTCTAGTTAAGAGTTATTAATTGACCATATTGAAAATGACTACACCCTCCGGTCACTAATATAAGCAAAAGTTTGATTTTTAGATTCATTCATTAAATGATGTATGTAGTCTTTATTATAGACTACATACGTCATTTAATGAATGAATTTAAAAATCAAATTTTTGCTTATATTAGTGACCGGAGGGTGTATATAATAGAACCCCCTATTAAACCTGCCTCATTTGACTCAATTATCAATGGTCTAGACCATACTATATGATAATTTATATAGTTGAGTCAAATTAATAAATAAATTAATGAATACACACGCCTGCATGAATGGTATAATGTTTTATATACACAAAAATAATTGGAAGCTATAGCACATGAACATGCAAGTTCTATAGCACTTGGCAGGCTTTTAGGCGTGCCCCATCTCAAATTTCCTTTCCCTCATTCATATAAATATTCTTTAATTATTTCTGAGTCAAATGTCCTTTGATTCCTCTACCTGTTCTCTAATACTATATACTCCCTTTCATACTCACAGTAATTTATTTTCCTCTTTTATCCCTTTAATCATATTCTCATCATAACACAATATTTTTTCTAAGAAGTCATTGCCTTTTACTATGAGTAATGAGAGTTAAATCCTATATAAATGCTGTGTGGAGCAGTGGAAAGTAGAGTCATTTGATTTAGAGAACTTTATTGTCTTTTTAAATCCAATGATTCTACGAGCCACTGAACCATGCGATGGTTATATAGGAATCAAATGTACGAGTTGTTGCCGTTTCTTTTGAATCGTATTTTTTGAAATTAGTTCCTATTCGACAACACGTTGAATTTAGATATCATTTATCTTTCTTATATATAGCTTTTTGTTCATGATATGTCAGTTCAATGATAAGAATTTGATTTTGTAATTTTAATGGTCGTTAGCGTCACATTAATTAAAAACCATTTCTCCCTTTTCCATTTTTTTTTTGTAATAAAATAATTTATTCTGATCTTTGATACTAATTTATTGTTATTTGCTTTTTCAGAAGGAAATGGATCCAAAGTGTCTAAGCTATGAGAGAATATCAGATGGCAGTTCATCTACAAACCTATCAGGATCAAGCCCAAAGAAACCTAATTTGGATTTGGAATTCACCCTAGGCCAACCTCTTTGA
Protein sequence

>MS.gene97733.t1

MELFPAQPDLSLQISPPNTKPTTTSNWKRTTTTEEEMDLGFWKRALDSRNSLSSSMASKTDNYSFDLSLSNPTKPLDSNNNTSNNLIHHHHFQNSGNNNANNPYQSFHQNHYFQHPQPLFQHHQPQQQHHQSLSQELGFLRPIRGIPVYQNPPPLSFPQLHNHNHNHNLNHLHILDGATTTPSTISNNNNTSSSPFQSQALMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRVGASSGQSDVYDNGSSGDNSDDIMFDINSSRRSSDLSIKQQGRSSVNQDKECYGLWSNSSREAWLHGKPKVDSIGNMQSLEKEMDPKCLSYERISDGSSSTNLSGSSPKKPNLDLEFTLGQPL