Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97759.t1 | XP_003621009.1 | 98.9 | 437 | 5 | 0 | 1 | 437 | 1 | 437 | 1.70E-226 | 795 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97759.t1 | Q9MAT6 | 53.1 | 377 | 146 | 5 | 1 | 358 | 1 | 365 | 4.9e-89 | 329.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97759.t1 | G7KWP7 | 98.9 | 437 | 5 | 0 | 1 | 437 | 1 | 437 | 1.2e-226 | 795.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene97759.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97759.t1 | MTR_7g005970 | 98.856 | 437 | 5 | 0 | 1 | 437 | 1 | 437 | 0.0 | 902 |
| MS.gene97759.t1 | MTR_1g116180 | 61.440 | 389 | 131 | 8 | 1 | 377 | 1 | 382 | 1.92e-165 | 472 |
| MS.gene97759.t1 | MTR_1g116180 | 64.127 | 315 | 97 | 7 | 1 | 303 | 1 | 311 | 1.77e-141 | 407 |
| MS.gene97759.t1 | MTR_3g114920 | 45.062 | 324 | 151 | 9 | 25 | 337 | 20 | 327 | 5.57e-83 | 258 |
| MS.gene97759.t1 | MTR_3g009890 | 39.073 | 302 | 121 | 6 | 22 | 323 | 26 | 264 | 3.41e-56 | 187 |
| MS.gene97759.t1 | MTR_5g080030 | 24.055 | 291 | 158 | 7 | 67 | 353 | 70 | 301 | 9.12e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97759.t1 | AT1G04880 | 54.813 | 374 | 140 | 6 | 1 | 356 | 1 | 363 | 2.35e-119 | 355 |
| MS.gene97759.t1 | AT1G76110 | 42.812 | 313 | 156 | 3 | 25 | 327 | 27 | 326 | 8.14e-82 | 256 |
| MS.gene97759.t1 | AT3G13350 | 47.157 | 299 | 126 | 8 | 30 | 323 | 34 | 305 | 7.02e-79 | 247 |
| MS.gene97759.t1 | AT1G55650 | 39.867 | 301 | 140 | 6 | 32 | 331 | 30 | 290 | 3.69e-64 | 210 |
Find 0 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTAAAAACATCAAAT+AGG | + | 50679:4943-4962 | None:intergenic | 10.0% |
| !!! | AGTATTACATATATAATTTT+TGG | - | 50679:5424-5443 | MS.gene97759:CDS | 10.0% |
| !! | CAATTTCCTTAAATTATTAT+TGG | - | 50679:7442-7461 | MS.gene97759:intron | 15.0% |
| !! | GAAAAGAAGAAAAAATAATT+TGG | - | 50679:5913-5932 | MS.gene97759:intron | 15.0% |
| !! | TACATACCAATAATAATTTA+AGG | + | 50679:7451-7470 | None:intergenic | 15.0% |
| !! | TTCACAAAAATTATTTAGAA+AGG | + | 50679:4551-4570 | None:intergenic | 15.0% |
| !!! | AAAATGAACATGTTTTTATT+AGG | + | 50679:4895-4914 | None:intergenic | 15.0% |
| !!! | AATAGCTTTATTTATTTTAC+AGG | + | 50679:6516-6535 | None:intergenic | 15.0% |
| !!! | ATTTTTTCTTCTTTTCTTTT+TGG | + | 50679:5909-5928 | None:intergenic | 15.0% |
| !!! | GATGTTTTTAATATTTAATC+AGG | - | 50679:4947-4966 | MS.gene97759:intron | 15.0% |
| !!! | TTATTAATTTTAATGCTTTG+TGG | + | 50679:6720-6739 | None:intergenic | 15.0% |
| !!! | TTGTAATTTTGATAAATTCA+TGG | + | 50679:6192-6211 | None:intergenic | 15.0% |
| !!! | TTTGTAATTTTCAATACATT+TGG | - | 50679:6352-6371 | MS.gene97759:intron | 15.0% |
| !! | AAATGAGATTGAAAAACTAA+AGG | + | 50679:6493-6512 | None:intergenic | 20.0% |
| !! | AATAAATATGTTCATGAATG+AGG | - | 50679:4668-4687 | MS.gene97759:intron | 20.0% |
| !! | ATAATATTAAGTACCTTTGT+CGG | - | 50679:5264-5283 | MS.gene97759:CDS | 20.0% |
| !! | TCAATCTGGTTAAATATATT+TGG | - | 50679:6444-6463 | MS.gene97759:CDS | 20.0% |
| !! | TCATCTATGAAAAAAAGTTT+AGG | + | 50679:5355-5374 | None:intergenic | 20.0% |
| !! | TGACTAACAAAATATACATT+TGG | + | 50679:6224-6243 | None:intergenic | 20.0% |
| !!! | AACATGTTCATTTTATTTCA+AGG | - | 50679:4901-4920 | MS.gene97759:intron | 20.0% |
| !!! | ATAACTGAAATTTTGTTTCA+GGG | - | 50679:4423-4442 | MS.gene97759:CDS | 20.0% |
| !!! | TAACAATTCAAATTGGTTTT+TGG | - | 50679:7188-7207 | MS.gene97759:intron | 20.0% |
| !!! | TATAACTGAAATTTTGTTTC+AGG | - | 50679:4422-4441 | MS.gene97759:CDS | 20.0% |
| !!! | TATTTTACAAAATTCGATGT+TGG | - | 50679:5126-5145 | MS.gene97759:CDS | 20.0% |
| !!! | TTGGTTATTTTTTAACGATT+TGG | - | 50679:7207-7226 | MS.gene97759:intron | 20.0% |
| !!! | TTTTAATGTTCAATATGACT+AGG | + | 50679:6049-6068 | None:intergenic | 20.0% |
| ! | AAGGATATTAGTAGAATGAT+TGG | - | 50679:6909-6928 | MS.gene97759:intron | 25.0% |
| ! | AATCACAAGCATTAAAATAG+TGG | + | 50679:4848-4867 | None:intergenic | 25.0% |
| ! | ACAAAGTTACTTAATCAATC+TGG | - | 50679:6430-6449 | MS.gene97759:CDS | 25.0% |
| ! | AGATCTATGTACAAATCTAT+AGG | + | 50679:5401-5420 | None:intergenic | 25.0% |
| ! | AGCATATTAATAACATGACT+AGG | + | 50679:7536-7555 | None:intergenic | 25.0% |
| ! | CACAAATTGCTATAAAGATA+AGG | + | 50679:5464-5483 | None:intergenic | 25.0% |
| ! | CATATTTATTTGCTCAAACT+TGG | + | 50679:4658-4677 | None:intergenic | 25.0% |
| ! | CATTAAGGTTTATCAAGAAA+AGG | - | 50679:7568-7587 | MS.gene97759:CDS | 25.0% |
| ! | GATCTATGTACAAATCTATA+GGG | + | 50679:5400-5419 | None:intergenic | 25.0% |
| ! | GATTGATTAAGTAACTTTGT+TGG | + | 50679:6430-6449 | None:intergenic | 25.0% |
| ! | GGAAAATTTCTTATACTAGT+TGG | + | 50679:4874-4893 | None:intergenic | 25.0% |
| ! | TAGTTAACAATAACAAGTAG+TGG | - | 50679:6567-6586 | MS.gene97759:intron | 25.0% |
| ! | TGATTTATATATGCATGACT+TGG | + | 50679:6542-6561 | None:intergenic | 25.0% |
| ! | TTATCAAGAAAAGGCTATTA+AGG | - | 50679:7577-7596 | MS.gene97759:CDS | 25.0% |
| ! | TTCGGTTTAACAATTCAAAT+TGG | - | 50679:7181-7200 | MS.gene97759:intron | 25.0% |
| !! | AAAGTAAGGATAACATGTTT+TGG | + | 50679:7961-7980 | None:intergenic | 25.0% |
| !! | ATACAAGTTCGATTTTGAAT+CGG | - | 50679:7290-7309 | MS.gene97759:intron | 25.0% |
| !! | GTATATTTTGTTAGTCACTT+TGG | - | 50679:6227-6246 | MS.gene97759:CDS | 25.0% |
| !! | TTTGATTTAACAGTTTGCTT+TGG | + | 50679:7085-7104 | None:intergenic | 25.0% |
| !!! | TCTACTATTTTAGATCCAAA+CGG | - | 50679:5611-5630 | MS.gene97759:intron | 25.0% |
| !!! | TTCATTTTATTTCAAGGACA+TGG | - | 50679:4907-4926 | MS.gene97759:intron | 25.0% |
| AAAAATTGCGTTATTGAAGC+TGG | + | 50679:5780-5799 | None:intergenic | 30.0% | |
| AAATTGTAACCACTTCTGTT+AGG | + | 50679:6837-6856 | None:intergenic | 30.0% | |
| AATATGACTAGGTGTATGTT+TGG | + | 50679:6038-6057 | None:intergenic | 30.0% | |
| AATGTAAGCATAAAGAGCTT+GGG | + | 50679:4186-4205 | None:intergenic | 30.0% | |
| AATGTCCAAGTTAAAGCTTT+CGG | + | 50679:4702-4721 | None:intergenic | 30.0% | |
| ACAAAATATACATTTGGCGA+TGG | + | 50679:6218-6237 | None:intergenic | 30.0% | |
| ACACTAACATATTGTTGTCA+TGG | - | 50679:4380-4399 | MS.gene97759:CDS | 30.0% | |
| ACATATTGTTGTCATGGATT+TGG | - | 50679:4386-4405 | MS.gene97759:CDS | 30.0% | |
| ACTAAATACACTCAACAGAT+TGG | - | 50679:4765-4784 | MS.gene97759:intron | 30.0% | |
| AGGCTATTAAGGATAAAGAA+AGG | - | 50679:7588-7607 | MS.gene97759:CDS | 30.0% | |
| AGTAGTTTCCTAAATCAAAG+CGG | + | 50679:6308-6327 | None:intergenic | 30.0% | |
| ATTGATGGAAAGTTTGAAAG+TGG | - | 50679:6636-6655 | MS.gene97759:intron | 30.0% | |
| GGAAGAAGTCAGAAATAAAA+AGG | - | 50679:6790-6809 | MS.gene97759:intron | 30.0% | |
| GTAACTGTCTACTTAATCTT+TGG | + | 50679:6132-6151 | None:intergenic | 30.0% | |
| TAAAAGTAGACATAGAAGTG+CGG | - | 50679:6064-6083 | MS.gene97759:intron | 30.0% | |
| TAACACAACACTAATACATG+TGG | - | 50679:7403-7422 | MS.gene97759:intron | 30.0% | |
| TATATGAGCTTAAGAACCTT+AGG | - | 50679:5950-5969 | MS.gene97759:intron | 30.0% | |
| TCACGACTCAATTCAATTTA+TGG | + | 50679:4983-5002 | None:intergenic | 30.0% | |
| TCGTGAACAAAACTTTGTAT+GGG | - | 50679:4997-5016 | MS.gene97759:intron | 30.0% | |
| TGTATAAATGTTTGACACAC+CGG | + | 50679:7275-7294 | None:intergenic | 30.0% | |
| TTAGACACTATGACTATTCA+AGG | + | 50679:7386-7405 | None:intergenic | 30.0% | |
| TTATATCAGTCAACGAAGAT+TGG | - | 50679:5158-5177 | MS.gene97759:CDS | 30.0% | |
| ! | ACATCATCATATTTTGCAAG+AGG | + | 50679:4153-4172 | None:intergenic | 30.0% |
| ! | AGTTCTTTTCCTCCAATAAT+GGG | + | 50679:4451-4470 | None:intergenic | 30.0% |
| ! | ATAGTATTTTCTGAGCACAA+AGG | + | 50679:5563-5582 | None:intergenic | 30.0% |
| ! | GTATTGCCAAATTGTTGTTA+CGG | - | 50679:7343-7362 | MS.gene97759:intron | 30.0% |
| ! | TAAACCAAACTGGTTTAGTT+CGG | + | 50679:7134-7153 | None:intergenic | 30.0% |
| ! | TAACAGTTTGCTTTGGTATT+TGG | + | 50679:7078-7097 | None:intergenic | 30.0% |
| ! | TACAAGTTCGATTTTGAATC+GGG | - | 50679:7291-7310 | MS.gene97759:intron | 30.0% |
| ! | TAGTTCTTTTCCTCCAATAA+TGG | + | 50679:4452-4471 | None:intergenic | 30.0% |
| ! | TATCTAGTTTCAGTTTCAGT+AGG | - | 50679:6660-6679 | MS.gene97759:intron | 30.0% |
| ! | TGCAAAATATGATGATGTTG+TGG | - | 50679:4155-4174 | MS.gene97759:CDS | 30.0% |
| !!! | TAACGATTTGGTTAGTTTTC+TGG | - | 50679:7219-7238 | MS.gene97759:intron | 30.0% |
| AAAGCTACTAAACCAAACCA+TGG | - | 50679:6884-6903 | MS.gene97759:intron | 35.0% | |
| AAATTGAACCAAACCGTCAT+TGG | + | 50679:7322-7341 | None:intergenic | 35.0% | |
| AATATTGCATCTGCTGCATT+GGG | - | 50679:6744-6763 | MS.gene97759:intron | 35.0% | |
| ACAATATGTTAGTGTCGTGT+CGG | + | 50679:4375-4394 | None:intergenic | 35.0% | |
| ACTGTCTACTTAATCTTTGG+TGG | + | 50679:6129-6148 | None:intergenic | 35.0% | |
| AGCTTATGAAAGAGAGAAGA+TGG | - | 50679:5488-5507 | MS.gene97759:intron | 35.0% | |
| ATATCGAAGACATGTTCGAT+AGG | - | 50679:7038-7057 | MS.gene97759:intron | 35.0% | |
| CAAACAATCATGCCATACTT+CGG | - | 50679:7508-7527 | MS.gene97759:intron | 35.0% | |
| CAAGCTCTTTATGCTTACAT+TGG | - | 50679:4185-4204 | MS.gene97759:CDS | 35.0% | |
| CAATGATTTCCCTATGAAAG+TGG | - | 50679:4098-4117 | MS.gene97759:CDS | 35.0% | |
| CAATGTAAGCATAAAGAGCT+TGG | + | 50679:4187-4206 | None:intergenic | 35.0% | |
| CACTATGACTATTCAAGGTT+CGG | + | 50679:7381-7400 | None:intergenic | 35.0% | |
| CTTCAATTGTAAGCCATGTA+TGG | - | 50679:4316-4335 | MS.gene97759:CDS | 35.0% | |
| GACTCAATTCCTTACTAGTT+GGG | + | 50679:5184-5203 | None:intergenic | 35.0% | |
| GATTGTTTGTAGAACCTATG+AGG | + | 50679:7497-7516 | None:intergenic | 35.0% | |
| GTAGAATGATTGGTGAACTT+TGG | - | 50679:6919-6938 | MS.gene97759:intron | 35.0% | |
| GTCGTGAACAAAACTTTGTA+TGG | - | 50679:4996-5015 | MS.gene97759:intron | 35.0% | |
| GTTCACAAACTAAACCAAAC+TGG | + | 50679:7144-7163 | None:intergenic | 35.0% | |
| TAATATCCTTGTCCATGGTT+TGG | + | 50679:6899-6918 | None:intergenic | 35.0% | |
| TCAAACTTGGACACAATCTA+TGG | + | 50679:4645-4664 | None:intergenic | 35.0% | |
| TCAGGATATGAATGAGACAT+AGG | + | 50679:4129-4148 | None:intergenic | 35.0% | |
| TCTACTAATATCCTTGTCCA+TGG | + | 50679:6904-6923 | None:intergenic | 35.0% | |
| TGACTCAATTCCTTACTAGT+TGG | + | 50679:5185-5204 | None:intergenic | 35.0% | |
| TGTTGCAGATGATATCAACA+TGG | - | 50679:7787-7806 | MS.gene97759:intron | 35.0% | |
| ! | ACTTTGGTTCCTAAATGTGT+GGG | + | 50679:6396-6415 | None:intergenic | 35.0% |
| ! | TAACCACTTCTGTTAGGTTT+TGG | + | 50679:6831-6850 | None:intergenic | 35.0% |
| ! | TCACTTGTTGGAGTTATTGA+TGG | - | 50679:6621-6640 | MS.gene97759:intron | 35.0% |
| ! | TCATATTTTGCAAGAGGTTC+AGG | + | 50679:4147-4166 | None:intergenic | 35.0% |
| ! | TCTATTAGCCGCTTTGATTT+AGG | - | 50679:6297-6316 | MS.gene97759:intron | 35.0% |
| !! | ACTATTTTAGATCCAAACGG+TGG | - | 50679:5614-5633 | MS.gene97759:intron | 35.0% |
| !!! | AGCTTTTGTTGATTCAGACA+AGG | - | 50679:7844-7863 | MS.gene97759:CDS | 35.0% |
| AATGCTTCTGAATTGCCTCA+AGG | - | 50679:5849-5868 | MS.gene97759:intron | 40.0% | |
| ACTAAACCAAACCATGGACA+AGG | - | 50679:6890-6909 | MS.gene97759:intron | 40.0% | |
| AGCTTAAGAACCTTAGGCTT+CGG | - | 50679:5956-5975 | MS.gene97759:intron | 40.0% | |
| AGGTGTATGTTTGGATTGAC+AGG | + | 50679:6029-6048 | None:intergenic | 40.0% | |
| ATAGGAGCTACCACTTTCAT+AGG | + | 50679:4111-4130 | None:intergenic | 40.0% | |
| ATCAACATGGATGCTTCTTC+CGG | - | 50679:7800-7819 | MS.gene97759:intron | 40.0% | |
| CAATATTGCATCTGCTGCAT+TGG | - | 50679:6743-6762 | MS.gene97759:intron | 40.0% | |
| CAGTATTTCACTGAGCATCA+AGG | - | 50679:5291-5310 | MS.gene97759:CDS | 40.0% | |
| CAGTCCTAATTATCAACAGC+CGG | - | 50679:7253-7272 | MS.gene97759:intron | 40.0% | |
| CATCCAAAACCTAACAGAAG+TGG | - | 50679:6825-6844 | MS.gene97759:intron | 40.0% | |
| GAAGTTCTTAGCCATTGTGA+GGG | - | 50679:7887-7906 | MS.gene97759:CDS | 40.0% | |
| GAGAAGCTTCATGCTTCTAT+GGG | - | 50679:4207-4226 | MS.gene97759:CDS | 40.0% | |
| GATAATCCTCCATTTCTGCT+TGG | + | 50679:7616-7635 | None:intergenic | 40.0% | |
| GCTGAACCGTAACAACAATT+TGG | + | 50679:7352-7371 | None:intergenic | 40.0% | |
| GCTGAGTTTCTCTGACATTA+AGG | - | 50679:7553-7572 | MS.gene97759:CDS | 40.0% | |
| TAAACCGAACCAAACTGTGA+TGG | + | 50679:7170-7189 | None:intergenic | 40.0% | |
| TAGGAGCTACCACTTTCATA+GGG | + | 50679:4110-4129 | None:intergenic | 40.0% | |
| TATTGAAGCTGGAACAGACA+TGG | + | 50679:5769-5788 | None:intergenic | 40.0% | |
| TCTTCTGGATCTTCACTTGT+TGG | - | 50679:6609-6628 | MS.gene97759:intron | 40.0% | |
| TGAAGTTCTTAGCCATTGTG+AGG | - | 50679:7886-7905 | MS.gene97759:CDS | 40.0% | |
| TGAATCCTAGAGACTCATCA+GGG | + | 50679:5327-5346 | None:intergenic | 40.0% | |
| TGATTCAGACAAGGCAACTA+AGG | - | 50679:7853-7872 | MS.gene97759:CDS | 40.0% | |
| TGTTAGCGTAAAGACATCGT+TGG | - | 50679:5238-5257 | MS.gene97759:CDS | 40.0% | |
| TGTTTCAGGGTTCCCATTAT+TGG | - | 50679:4436-4455 | MS.gene97759:CDS | 40.0% | |
| TTCATTGAAGTGACTTCTCG+TGG | - | 50679:4487-4506 | MS.gene97759:intron | 40.0% | |
| TTGGTATGTAGTATTGTGCC+AGG | - | 50679:7461-7480 | MS.gene97759:intron | 40.0% | |
| ! | GACTTTGGTTCCTAAATGTG+TGG | + | 50679:6397-6416 | None:intergenic | 40.0% |
| !! | AGAAAGGTACCAAGCAGAAA+TGG | - | 50679:7604-7623 | MS.gene97759:intron | 40.0% |
| ATCCTTGAATGTGCCAAGTG+TGG | - | 50679:6156-6175 | MS.gene97759:intron | 45.0% | |
| ATGCACAAACCAGAAGATGC+AGG | + | 50679:5643-5662 | None:intergenic | 45.0% | |
| ATTGAAGTGACTTCTCGTGG+AGG | - | 50679:4490-4509 | MS.gene97759:intron | 45.0% | |
| CACGTATCGAACACCATACA+TGG | + | 50679:4332-4351 | None:intergenic | 45.0% | |
| CATGACTAGGAACCGAAGTA+TGG | + | 50679:7523-7542 | None:intergenic | 45.0% | |
| CATGATTTAGCCGAAGCCTA+AGG | + | 50679:5969-5988 | None:intergenic | 45.0% | |
| CATTCACTTCTCCCTCACAA+TGG | + | 50679:7901-7920 | None:intergenic | 45.0% | |
| CGAACCGAACTAAACCAGTT+TGG | - | 50679:7127-7146 | MS.gene97759:intron | 45.0% | |
| CTAGAGACTCATCAGGGTTA+GGG | + | 50679:5321-5340 | None:intergenic | 45.0% | |
| CTGAATCCTAGAGACTCATC+AGG | + | 50679:5328-5347 | None:intergenic | 45.0% | |
| CTGTCCATCACAGTTTGGTT+CGG | - | 50679:7163-7182 | MS.gene97759:intron | 45.0% | |
| CTTAGGCTTCGGCTAAATCA+TGG | - | 50679:5967-5986 | MS.gene97759:intron | 45.0% | |
| GAAATACTGAACGCCGACAA+AGG | + | 50679:5280-5299 | None:intergenic | 45.0% | |
| GAGCTTAAGAAGTGACCTTG+AGG | + | 50679:5867-5886 | None:intergenic | 45.0% | |
| GGAGAAGCTTCATGCTTCTA+TGG | - | 50679:4206-4225 | MS.gene97759:CDS | 45.0% | |
| GTAGGTTCAGAGACACTCAA+AGG | - | 50679:6678-6697 | MS.gene97759:intron | 45.0% | |
| GTGAACTGTCCATCACAGTT+TGG | - | 50679:7158-7177 | MS.gene97759:intron | 45.0% | |
| GTTGGAGTAAGCAGTGACTT+TGG | + | 50679:6412-6431 | None:intergenic | 45.0% | |
| TCAGACAAGGCAACTAAGGA+GGG | - | 50679:7857-7876 | MS.gene97759:CDS | 45.0% | |
| TCCAAGTTAAAGCTTTCGGC+TGG | + | 50679:4698-4717 | None:intergenic | 45.0% | |
| TCTGGAAGGAGATTCAGCTT+TGG | - | 50679:7694-7713 | MS.gene97759:intron | 45.0% | |
| TGAAACCGACCCACACATTT+AGG | - | 50679:6384-6403 | MS.gene97759:intron | 45.0% | |
| TGCACAAACCAGAAGATGCA+GGG | + | 50679:5642-5661 | None:intergenic | 45.0% | |
| TGGACAATAGAGACCACACT+TGG | + | 50679:6172-6191 | None:intergenic | 45.0% | |
| TGGTTCCTAAATGTGTGGGT+CGG | + | 50679:6392-6411 | None:intergenic | 45.0% | |
| TGTTCTGCAGTGTCTTCTTC+TGG | - | 50679:6594-6613 | MS.gene97759:intron | 45.0% | |
| TTCAGACAAGGCAACTAAGG+AGG | - | 50679:7856-7875 | MS.gene97759:CDS | 45.0% | |
| TTCAGGGTTCCCATTATTGG+AGG | - | 50679:4439-4458 | MS.gene97759:CDS | 45.0% | |
| TTGAAGTGACTTCTCGTGGA+GGG | - | 50679:4491-4510 | MS.gene97759:intron | 45.0% | |
| TTGAGTCATATGCCCTGCAA+AGG | - | 50679:5197-5216 | MS.gene97759:CDS | 45.0% | |
| ! | AAGGTACCAAGCAGAAATGG+AGG | - | 50679:7607-7626 | MS.gene97759:intron | 45.0% |
| ! | AGTCGACTTTCAGAAGTCAG+GGG | - | 50679:5824-5843 | MS.gene97759:intron | 45.0% |
| ! | CAATTTTTGCAGCCTTCTCC+AGG | - | 50679:5792-5811 | MS.gene97759:intron | 45.0% |
| ! | CAGTCGACTTTCAGAAGTCA+GGG | - | 50679:5823-5842 | MS.gene97759:intron | 45.0% |
| ! | GAACCAAACCGTCATTGGTT+TGG | + | 50679:7317-7336 | None:intergenic | 45.0% |
| ! | GAAGATTGGCCCAACTAGTA+AGG | - | 50679:5172-5191 | MS.gene97759:CDS | 45.0% |
| ! | GCATCATGACTTTGTTGTGG+TGG | - | 50679:5992-6011 | MS.gene97759:intron | 45.0% |
| ! | TCCAGCCGAAAGCTTTAACT+TGG | - | 50679:4694-4713 | MS.gene97759:intron | 45.0% |
| ! | TCTGAGCACAAAGGAAGCAT+TGG | + | 50679:5554-5573 | None:intergenic | 45.0% |
| ! | TTGTTGTTACGGTTCAGCTC+AGG | - | 50679:7354-7373 | MS.gene97759:intron | 45.0% |
| !! | CACACCGGCTGTTGATAATT+AGG | + | 50679:7260-7279 | None:intergenic | 45.0% |
| !! | GAAGCATTGGTTGCTGTTGA+TGG | + | 50679:5541-5560 | None:intergenic | 45.0% |
| !!! | CTGTTAGGTTTTGGATGTGC+AGG | + | 50679:6822-6841 | None:intergenic | 45.0% |
| AACATGGATGCTTCTTCCGG+TGG | - | 50679:7803-7822 | MS.gene97759:intron | 50.0% | |
| AAGTCGACTGGATGTGTTCC+TGG | + | 50679:5813-5832 | None:intergenic | 50.0% | |
| ACTCCTGAGGAGAGTAGTTC+TGG | - | 50679:7752-7771 | MS.gene97759:intron | 50.0% | |
| ACTGGATGTGTTCCTGGAGA+AGG | + | 50679:5807-5826 | None:intergenic | 50.0% | |
| AGAATCCACTCTTGCTCCAC+CGG | + | 50679:7822-7841 | None:intergenic | 50.0% | |
| AGCATTGTAACCGACTACGC+GGG | - | 50679:7653-7672 | MS.gene97759:intron | 50.0% | |
| AGGCTTCGGCTAAATCATGG+CGG | - | 50679:5970-5989 | MS.gene97759:intron | 50.0% | |
| AGTTGAACTCACGCCTTTGC+AGG | + | 50679:5213-5232 | None:intergenic | 50.0% | |
| CAGGTGTTTGTGTGCCTCAT+AGG | - | 50679:7480-7499 | MS.gene97759:intron | 50.0% | |
| CCTAACCCTGATGAGTCTCT+AGG | - | 50679:5319-5338 | MS.gene97759:CDS | 50.0% | |
| CCTAGAGACTCATCAGGGTT+AGG | + | 50679:5322-5341 | None:intergenic | 50.0% | |
| CGATTCTTGTCAGACTCCTG+AGG | - | 50679:7739-7758 | MS.gene97759:intron | 50.0% | |
| CTATGAGGCACACAAACACC+TGG | + | 50679:7482-7501 | None:intergenic | 50.0% | |
| GAATCGGGCCAAACCAATGA+CGG | - | 50679:7306-7325 | MS.gene97759:intron | 50.0% | |
| GACCACACTTGGCACATTCA+AGG | + | 50679:6161-6180 | None:intergenic | 50.0% | |
| GCACAAACCAGAAGATGCAG+GGG | + | 50679:5641-5660 | None:intergenic | 50.0% | |
| GCGGCATCATGACTTTGTTG+TGG | - | 50679:5989-6008 | MS.gene97759:intron | 50.0% | |
| GTTGAACTCACGCCTTTGCA+GGG | + | 50679:5212-5231 | None:intergenic | 50.0% | |
| TCACCAGAACTACTCTCCTC+AGG | + | 50679:7758-7777 | None:intergenic | 50.0% | |
| TCCAGAAACCGTTGTTGCAG+TGG | + | 50679:7680-7699 | None:intergenic | 50.0% | |
| TGTGAGGGAGAAGTGAATGC+TGG | - | 50679:7902-7921 | MS.gene97759:CDS | 50.0% | |
| TTCTCGTGGAGGGATTGAGA+AGG | - | 50679:4501-4520 | MS.gene97759:intron | 50.0% | |
| ! | CCAGTCGACTTTCAGAAGTC+AGG | - | 50679:5822-5841 | MS.gene97759:intron | 50.0% |
| ! | CCTGACTTCTGAAAGTCGAC+TGG | + | 50679:5825-5844 | None:intergenic | 50.0% |
| ! | CTGCAACAACGGTTTCTGGA+AGG | - | 50679:7680-7699 | MS.gene97759:intron | 50.0% |
| ! | GAGCATTGTAACCGACTACG+CGG | - | 50679:7652-7671 | MS.gene97759:intron | 50.0% |
| ! | GGAAGGAGATTCAGCTTTGG+TGG | - | 50679:7697-7716 | MS.gene97759:intron | 50.0% |
| ! | GTGTGGGTCGGTTTCACAAT+AGG | + | 50679:6380-6399 | None:intergenic | 50.0% |
| AGACTCATCAGGGTTAGGGC+AGG | + | 50679:5317-5336 | None:intergenic | 55.0% | |
| CTGACTTCTTCCTCCTCCGA+CGG | + | 50679:6782-6801 | None:intergenic | 55.0% | |
| GAGGGAGAAGTGAATGCTGG+CGG | - | 50679:7905-7924 | MS.gene97759:CDS | 55.0% | |
| GCATTGTAACCGACTACGCG+GGG | - | 50679:7654-7673 | MS.gene97759:intron | 55.0% | |
| GCCACTGCAACAACGGTTTC+TGG | - | 50679:7676-7695 | MS.gene97759:intron | 55.0% | |
| GGGCCAAACCAATGACGGTT+TGG | - | 50679:7311-7330 | MS.gene97759:intron | 55.0% | |
| TTCTTCCGGTGGAGCAAGAG+TGG | - | 50679:7814-7833 | MS.gene97759:CDS | 55.0% | |
| ACTTCTTCCTCCTCCGACGG+CGG | + | 50679:6779-6798 | None:intergenic | 60.0% | |
| AGATGCAGGGGTCCACCGTT+TGG | + | 50679:5629-5648 | None:intergenic | 60.0% | |
| ACGCGGGGCCACTGCAACAA+CGG | - | 50679:7669-7688 | MS.gene97759:intron | 65.0% | |
| CGGTGGACCCCTGCATCTTC+TGG | - | 50679:5631-5650 | MS.gene97759:intron | 65.0% | |
| TTGCAGTGGCCCCGCGTAGT+CGG | + | 50679:7666-7685 | None:intergenic | 65.0% | |
| TCCAACGCCGCCGTCGGAGG+AGG | - | 50679:6769-6788 | MS.gene97759:intron | 75.0% | |
| TCCTCCTCCGACGGCGGCGT+TGG | + | 50679:6773-6792 | None:intergenic | 75.0% | |
| TGGGCGTCCAACGCCGCCGT+CGG | - | 50679:6763-6782 | MS.gene97759:intron | 75.0% | |
| ! | GCGTCCAACGCCGCCGTCGG+AGG | - | 50679:6766-6785 | MS.gene97759:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50679 | gene | 4069 | 7982 | 4069 | ID=MS.gene97759 |
| 50679 | mRNA | 4069 | 7982 | 4069 | ID=MS.gene97759.t1;Parent=MS.gene97759 |
| 50679 | exon | 7810 | 7982 | 7810 | ID=MS.gene97759.t1.exon1;Parent=MS.gene97759.t1 |
| 50679 | CDS | 7810 | 7982 | 7810 | ID=cds.MS.gene97759.t1;Parent=MS.gene97759.t1 |
| 50679 | exon | 7529 | 7607 | 7529 | ID=MS.gene97759.t1.exon2;Parent=MS.gene97759.t1 |
| 50679 | CDS | 7529 | 7607 | 7529 | ID=cds.MS.gene97759.t1;Parent=MS.gene97759.t1 |
| 50679 | exon | 6399 | 6561 | 6399 | ID=MS.gene97759.t1.exon3;Parent=MS.gene97759.t1 |
| 50679 | CDS | 6399 | 6561 | 6399 | ID=cds.MS.gene97759.t1;Parent=MS.gene97759.t1 |
| 50679 | exon | 6181 | 6306 | 6181 | ID=MS.gene97759.t1.exon4;Parent=MS.gene97759.t1 |
| 50679 | CDS | 6181 | 6306 | 6181 | ID=cds.MS.gene97759.t1;Parent=MS.gene97759.t1 |
| 50679 | exon | 5083 | 5447 | 5083 | ID=MS.gene97759.t1.exon5;Parent=MS.gene97759.t1 |
| 50679 | CDS | 5083 | 5447 | 5083 | ID=cds.MS.gene97759.t1;Parent=MS.gene97759.t1 |
| 50679 | exon | 4069 | 4476 | 4069 | ID=MS.gene97759.t1.exon6;Parent=MS.gene97759.t1 |
| 50679 | CDS | 4069 | 4476 | 4069 | ID=cds.MS.gene97759.t1;Parent=MS.gene97759.t1 |
| Gene Sequence |
| Protein sequence |
