AlfalfaGEDB | MS.gene97759

M. sativa cultivar XinJiangDaYe / MS.gene97759

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00505.22 PF01388.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97759.t1	XP_003621009.1	98.9	437	5	0	1	437	1	437	1.70E-226	795

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97759.t1	Q9MAT6	53.1	377	146	5	1	358	1	365	4.9e-89	329.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97759.t1	G7KWP7	98.9	437	5	0	1	437	1	437	1.2e-226	795.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene97759.t1	TR	ARID

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97759.t1	MTR_7g005970	98.856	437	5	0	1	437	1	437	0.0	902
MS.gene97759.t1	MTR_1g116180	61.440	389	131	8	1	377	1	382	1.92e-165	472
MS.gene97759.t1	MTR_1g116180	64.127	315	97	7	1	303	1	311	1.77e-141	407
MS.gene97759.t1	MTR_3g114920	45.062	324	151	9	25	337	20	327	5.57e-83	258
MS.gene97759.t1	MTR_3g009890	39.073	302	121	6	22	323	26	264	3.41e-56	187
MS.gene97759.t1	MTR_5g080030	24.055	291	158	7	67	353	70	301	9.12e-14	73.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97759.t1	AT1G04880	54.813	374	140	6	1	356	1	363	2.35e-119	355
MS.gene97759.t1	AT1G76110	42.812	313	156	3	25	327	27	326	8.14e-82	256
MS.gene97759.t1	AT3G13350	47.157	299	126	8	30	323	34	305	7.02e-79	247
MS.gene97759.t1	AT1G55650	39.867	301	140	6	32	331	30	290	3.69e-64	210

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Find 0 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATTGCGTTATTGAAGC+TGG	+	50679:5780-5799	None:intergenic	30.0%
AAATTGTAACCACTTCTGTT+AGG	+	50679:6837-6856	None:intergenic	30.0%
AATATGACTAGGTGTATGTT+TGG	+	50679:6038-6057	None:intergenic	30.0%
AATGTAAGCATAAAGAGCTT+GGG	+	50679:4186-4205	None:intergenic	30.0%
AATGTCCAAGTTAAAGCTTT+CGG	+	50679:4702-4721	None:intergenic	30.0%
ACAAAATATACATTTGGCGA+TGG	+	50679:6218-6237	None:intergenic	30.0%
ACACTAACATATTGTTGTCA+TGG	-	50679:4380-4399	MS.gene97759:CDS	30.0%
ACATATTGTTGTCATGGATT+TGG	-	50679:4386-4405	MS.gene97759:CDS	30.0%
ACTAAATACACTCAACAGAT+TGG	-	50679:4765-4784	MS.gene97759:intron	30.0%
AGGCTATTAAGGATAAAGAA+AGG	-	50679:7588-7607	MS.gene97759:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
50679	gene	4069	7982	4069	ID=MS.gene97759
50679	mRNA	4069	7982	4069	ID=MS.gene97759.t1;Parent=MS.gene97759
50679	exon	7810	7982	7810	ID=MS.gene97759.t1.exon1;Parent=MS.gene97759.t1
50679	CDS	7810	7982	7810	ID=cds.MS.gene97759.t1;Parent=MS.gene97759.t1
50679	exon	7529	7607	7529	ID=MS.gene97759.t1.exon2;Parent=MS.gene97759.t1
50679	CDS	7529	7607	7529	ID=cds.MS.gene97759.t1;Parent=MS.gene97759.t1
50679	exon	6399	6561	6399	ID=MS.gene97759.t1.exon3;Parent=MS.gene97759.t1
50679	CDS	6399	6561	6399	ID=cds.MS.gene97759.t1;Parent=MS.gene97759.t1
50679	exon	6181	6306	6181	ID=MS.gene97759.t1.exon4;Parent=MS.gene97759.t1
50679	CDS	6181	6306	6181	ID=cds.MS.gene97759.t1;Parent=MS.gene97759.t1
50679	exon	5083	5447	5083	ID=MS.gene97759.t1.exon5;Parent=MS.gene97759.t1
50679	CDS	5083	5447	5083	ID=cds.MS.gene97759.t1;Parent=MS.gene97759.t1
50679	exon	4069	4476	4069	ID=MS.gene97759.t1.exon6;Parent=MS.gene97759.t1
50679	CDS	4069	4476	4069	ID=cds.MS.gene97759.t1;Parent=MS.gene97759.t1

Gene Sequence

>MS.gene97759

ATGGCATCAACATCATGTTTTTTCAACAACAATGATTTCCCTATGAAAGTGGTAGCTCCTATGTCTCATTCATATCCTGAACCTCTTGCAAAATATGATGATGTTGTGGCAAATCCCAAGCTCTTTATGCTTACATTGGAGAAGCTTCATGCTTCTATGGGTACTAAGTTCATGTAAGTTCTTTATCTCTTTGCACTTCTTAGTTTATTTTCTGAATTTCACAATGATATATTTCACAATGATATAACTTCAATTGTAAGCCATGTATGGTGTTCGATACGTGTCAATGTCTTATGTAAGACACCGACACGACACTAACATATTGTTGTCATGGATTTGGAAAATACTTCATGTATAACTGAAATTTTGTTTCAGGGTTCCCATTATTGGAGGAAAAGAACTAGATTTGTGTCGACTCTTCATTGAAGTGACTTCTCGTGGAGGGATTGAGAAGGTAAAGATGTCAACTATTTTTTTTTCCTTTCTAAATAATTTTTGTGAATGTGTTTTGTCAAGATCAACATTTCTTCAATCTTCATGAAAAATAGAAGTTGAAATGTTGATCTTGAAATTCCATAGATTGTGTCCAAGTTTGAGCAAATAAATATGTTCATGAATGAGGTTTTCCAGCCGAAAGCTTTAACTTGGACATTTTGTTTACAAGTTTTTCTATAACATAAATAATCTAAAAAACACACTAAATACACTCAACAGATTGGAAATTTGCAATTTGTGAAATACAATTAAGATATTTTGTAGTGTTTGTCTATAGCTTGCCACTATTTTAATGCTTGTGATTTTGCCAACTAGTATAAGAAATTTTCCTAATAAAAACATGTTCATTTTATTTCAAGGACATGGAGTATAATTTCCTATTTGATGTTTTTAATATTTAATCAGGCTGATAAAGTCCATAAATTGAATTGAGTCGTGAACAAAACTTTGTATGGGAGATAACTTATCAGTGAAGCAACATAGATATATAAAGAGCGATCAAATTACAACAGTGTAATACTTGAGTAGTATTACAACGCTCAATAATTTCATAGACGATATATATTTTACAAAATTCGATGTTGGATTGAAAGATTATATCAGTCAACGAAGATTGGCCCAACTAGTAAGGAATTGAGTCATATGCCCTGCAAAGGCGTGAGTTCAACTCTCGTTGTTAGCGTAAAGACATCGTTGGTGAATAATATTAAGTACCTTTGTCGGCGTTCAGTATTTCACTGAGCATCAAGGCCTGCCCTAACCCTGATGAGTCTCTAGGATTCAGATCACCTAAACTTTTTTTCATAGATGAAAATTTATAACATACTAATCATCCCTATAGATTTGTACATAGATCTGAAAGTATTACATATATAATTTTTGGTGATTGCATAATATCCTTATCTTTATAGCAATTTGTGTTACAGCTTATGAAAGAGAGAAGATGGAAAGAAGTAACTGCAGCTTTCAGTTTTCCATCAACAGCAACCAATGCTTCCTTTGTGCTCAGAAAATACTATTCTTCATTGCTTTATCACTATGAGCAAATCTACTATTTTAGATCCAAACGGTGGACCCCTGCATCTTCTGGTTTGTGCATTTAAATGAAATTGTTTATTTGAACATGAATTTTTTGTTAGTTCATCATGCTCTAATGTAGAATTGAAATTGCACTTTTTCAGATGCTTTGCAGAATCAATCAACCATGTCTGTTCCAGCTTCAATAACGCAATTTTTGCAGCCTTCTCCAGGAACACATCCAGTCGACTTTCAGAAGTCAGGGGTTAATGCTTCTGAATTGCCTCAAGGTCACTTCTTAAGCTCAAATAAAATTATTTTCTCACCAAAAAGAAAAGAAGAAAAAATAATTTGGAGTGTATATATGTATATATGAGCTTAAGAACCTTAGGCTTCGGCTAAATCATGGCGGCATCATGACTTTGTTGTGGTGGCTCATCGAGATCCTGTCAATCCAAACATACACCTAGTCATATTGAACATTAAAAGTAGACATAGAAGTGCGGTAAACATGATGACACAAGCAGACACATAAATTAATGCTACCACCAAAGATTAAGTAGACAGTTACTTTGATCCTTGAATGTGCCAAGTGTGGTCTCTATTGTCCATGAATTTATCAAAATTACAAAAACCATCGCCAAATGTATATTTTGTTAGTCACTTTGGTCATAAAAAATATCTTTTGCTGCTTAATTTAGTTCTCAAACGTATCTTCTATTAGCCGCTTTGATTTAGGAAACTACTAACAGAAGATACAGTCAAAGATGATTTGTAATTTTCAATACATTTGGAGCCTATTGTGAAACCGACCCACACATTTAGGAACCAAAGTCACTGCTTACTCCAACAAAGTTACTTAATCAATCTGGTTAAATATATTTGGTCTAGTGTCATATAGTTTTCATGCCTTTAGTTTTTCAATCTCATTTCCTGTAAAATAAATAAAGCTATTAAACCAAGTCATGCATATATAAATCATTGATTAGTTAACAATAACAAGTAGTGGTGTTTGTTCTGCAGTGTCTTCTTCTGGATCTTCACTTGTTGGAGTTATTGATGGAAAGTTTGAAAGTGGATATCTAGTTTCAGTTTCAGTAGGTTCAGAGACACTCAAAGGTGTACTATATGAGTCTCCACAAAGCATTAAAATTAATAATAACAATATTGCATCTGCTGCATTGGGCGTCCAACGCCGCCGTCGGAGGAGGAAGAAGTCAGAAATAAAAAGGAGAGATCCTGCACATCCAAAACCTAACAGAAGTGGTTACAATTTCTTCTTTGCTGAACAACATGCAAGACTAAAGCTACTAAACCAAACCATGGACAAGGATATTAGTAGAATGATTGGTGAACTTTGGAACAACTTAAAAGAGTCTGAGAAAACAGTAAGTGATTAATTTGTTTAAATATTATTACTTGTTTGAGTGCACTATAGTATGTAACATTGACACTTTATATCGAAGACATGTTCGATAGGACTTTTAAAAAAAACCAAATACCAAAGCAAACTGTTAAATCAAACTGAACATTAACTGACAGTTCACGAACCGAACTAAACCAGTTTGGTTTAGTTTGTGAACTGTCCATCACAGTTTGGTTCGGTTTAACAATTCAAATTGGTTTTTGGTTATTTTTTAACGATTTGGTTAGTTTTCTGGTTTCTTTTCAGCAGTCCTAATTATCAACAGCCGGTGTGTCAAACATTTATACAAGTTCGATTTTGAATCGGGCCAAACCAATGACGGTTTGGTTCAATTTTGTATTGCCAAATTGTTGTTACGGTTCAGCTCAGGTCCGAACCTTGAATAGTCATAGTGTCTAACACAACACTAATACATGTGGTTACATTTAATTACTTCAATTTCCTTAAATTATTATTGGTATGTAGTATTGTGCCAGGTGTTTGTGTGCCTCATAGGTTCTACAAACAATCATGCCATACTTCGGTTCCTAGTCATGTTATTAATATGCTGAGTTTCTCTGACATTAAGGTTTATCAAGAAAAGGCTATTAAGGATAAAGAAAGGTACCAAGCAGAAATGGAGGATTATCGCGATAAAATGAAGACGAGCATTGTAACCGACTACGCGGGGCCACTGCAACAACGGTTTCTGGAAGGAGATTCAGCTTTGGTGGACATTGACATAAAAATGCACGATTCTTGTCAGACTCCTGAGGAGAGTAGTTCTGGTGAAAGTGACTATGTTGCAGATGATATCAACATGGATGCTTCTTCCGGTGGAGCAAGAGTGGATTCTGAAGCTTTTGTTGATTCAGACAAGGCAACTAAGGAGGGAGTTATTGAAGTTCTTAGCCATTGTGAGGGAGAAGTGAATGCTGGCGGAATTCAACAGACTCAAAAGATGAATGAGAGCCAAAACATGTTATCCTTACTTTAG

Protein sequence

>MS.gene97759.t1

MASTSCFFNNNDFPMKVVAPMSHSYPEPLAKYDDVVANPKLFMLTLEKLHASMGTKFMVPIIGGKELDLCRLFIEVTSRGGIEKLMKERRWKEVTAAFSFPSTATNASFVLRKYYSSLLYHYEQIYYFRSKRWTPASSDALQNQSTMSVPASITQFLQPSPGTHPVDFQKSGVNASELPQVSSSGSSLVGVIDGKFESGYLVSVSVGSETLKGVLYESPQSIKINNNNIASAALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKAIKDKERYQAEMEDYRDKMKTSIVTDYAGPLQQRFLEGDSALVDIDIKMHDSCQTPEESSSGESDYVADDINMDASSGGARVDSEAFVDSDKATKEGVIEVLSHCEGEVNAGGIQQTQKMNESQNMLSLL