AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene97960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97960.t1 MTR_8g069935 89.975 399 39 1 1 399 1 398 0.0 518
MS.gene97960.t1 MTR_8g067635 56.621 438 170 6 1 419 1 437 1.83e-126 376
MS.gene97960.t1 MTR_8g067650 56.452 434 167 5 1 419 1 427 1.88e-125 373
MS.gene97960.t1 MTR_6g053200 50.115 435 168 9 1 415 1 406 3.15e-96 299
MS.gene97960.t1 MTR_7g105000 51.989 352 157 4 1 352 1 340 3.49e-70 226
MS.gene97960.t1 MTR_2g024380 41.254 303 110 6 151 419 70 338 2.72e-58 198
MS.gene97960.t1 MTR_2g024380 46.193 197 60 3 1 154 1 194 3.63e-32 127
MS.gene97960.t1 MTR_2g024350 62.105 95 36 0 325 419 1 95 3.87e-35 130
MS.gene97960.t1 MTR_2g033110 54.598 174 72 4 1 171 1 170 6.87e-35 129
MS.gene97960.t1 MTR_1g099600 54.545 99 43 2 309 407 163 259 9.61e-30 117
MS.gene97960.t1 MTR_7g079040 47.917 96 49 1 311 406 133 227 2.09e-23 100
MS.gene97960.t1 MTR_8g028565 45.918 98 50 2 309 406 134 228 6.33e-23 99.4
MS.gene97960.t1 MTR_8g098945 56.944 72 30 1 333 404 130 200 5.37e-21 92.8
MS.gene97960.t1 MTR_2g032030 45.370 108 47 3 312 409 238 343 8.00e-21 94.4
MS.gene97960.t1 MTR_2g032030 44.248 113 51 3 312 414 238 348 2.12e-20 93.6
MS.gene97960.t1 MTR_4g094908 51.471 68 33 0 333 400 267 334 1.86e-19 89.4
MS.gene97960.t1 MTR_4g127040 51.316 76 36 1 328 403 242 316 2.05e-19 89.0
MS.gene97960.t1 MTR_5g016610 51.471 68 33 0 333 400 200 267 5.66e-19 86.7
MS.gene97960.t1 MTR_2g083870 56.061 66 29 0 327 392 75 140 4.03e-18 84.0
MS.gene97960.t1 MTR_8g087000 53.125 64 30 0 330 393 75 138 4.10e-18 84.0
MS.gene97960.t1 MTR_7g109600 49.296 71 36 0 322 392 43 113 4.31e-18 84.0
MS.gene97960.t1 MTR_8g087000 53.125 64 30 0 330 393 74 137 5.33e-18 83.6
MS.gene97960.t1 MTR_1g070455 57.627 59 25 0 333 391 294 352 7.55e-18 85.1
MS.gene97960.t1 MTR_3g108960 42.708 96 52 2 304 397 285 379 1.76e-17 84.3
MS.gene97960.t1 MTR_2g016770 53.968 63 29 0 330 392 33 95 1.97e-17 81.3
MS.gene97960.t1 MTR_2g016770 53.968 63 29 0 330 392 25 87 2.13e-17 80.9
MS.gene97960.t1 MTR_1g009613 47.826 69 36 0 333 401 263 331 2.28e-17 83.2
MS.gene97960.t1 MTR_7g104980 55.224 67 30 0 353 419 18 84 3.32e-16 77.8
MS.gene97960.t1 MTR_0117s0040 51.515 66 31 1 328 393 71 135 2.54e-15 75.9
MS.gene97960.t1 MTR_7g011820 47.761 67 34 1 332 398 410 475 2.66e-15 78.2
MS.gene97960.t1 MTR_7g011820 49.275 69 33 2 328 396 224 290 7.94e-15 76.6
MS.gene97960.t1 MTR_7g100510 40.196 102 44 3 309 395 324 423 3.96e-15 77.4
MS.gene97960.t1 MTR_7g100510 55.385 65 27 2 328 392 185 247 8.15e-15 76.3
MS.gene97960.t1 MTR_3g009470 49.315 73 35 2 330 402 278 348 1.58e-14 76.3
MS.gene97960.t1 MTR_3g009470 34.375 96 57 2 332 427 495 584 1.42e-13 73.2
MS.gene97960.t1 MTR_8g099350 41.379 87 45 2 307 387 103 189 1.90e-14 74.7
MS.gene97960.t1 MTR_3g009470 49.315 73 35 2 330 402 278 348 2.06e-14 75.5
MS.gene97960.t1 MTR_7g071120 51.220 82 35 3 315 396 152 228 2.74e-14 75.1
MS.gene97960.t1 MTR_7g071120 39.189 74 44 1 332 405 324 396 4.25e-11 65.1
MS.gene97960.t1 MTR_5g042920 46.269 67 35 1 332 398 320 385 2.98e-14 74.7
MS.gene97960.t1 MTR_5g042920 49.296 71 34 2 328 398 147 215 3.98e-13 71.2
MS.gene97960.t1 MTR_4g082580 47.761 67 34 1 332 398 278 343 6.79e-14 73.2
MS.gene97960.t1 MTR_1g086790 43.662 71 39 1 332 402 158 227 7.33e-14 72.8
MS.gene97960.t1 MTR_4g130900 36.111 108 56 3 297 392 312 418 8.89e-14 73.6
MS.gene97960.t1 MTR_7g080020 46.970 66 34 1 332 397 493 557 9.49e-14 73.9
MS.gene97960.t1 MTR_7g080020 44.304 79 42 2 322 400 270 346 1.01e-13 73.6
MS.gene97960.t1 MTR_3g056100 37.805 82 49 2 332 412 402 482 2.67e-13 72.0
MS.gene97960.t1 MTR_3g056100 48.529 68 33 2 325 392 236 301 2.05e-12 69.3
MS.gene97960.t1 MTR_4g013260 52.174 69 31 2 325 392 176 243 2.81e-13 72.0
MS.gene97960.t1 MTR_4g013260 44.262 61 33 1 332 392 336 395 3.31e-12 68.6
MS.gene97960.t1 MTR_3g056100 37.805 82 49 2 332 412 415 495 2.97e-13 72.0
MS.gene97960.t1 MTR_3g056100 48.529 68 33 2 325 392 236 301 2.32e-12 69.3
MS.gene97960.t1 MTR_7g109800 46.377 69 36 1 332 400 145 212 3.18e-13 70.5
MS.gene97960.t1 MTR_7g080000 47.619 63 32 1 332 394 432 493 3.26e-13 72.0
MS.gene97960.t1 MTR_7g080000 36.607 112 60 5 322 425 224 332 9.68e-12 67.4
MS.gene97960.t1 MTR_5g091390 50.000 62 30 1 332 393 157 217 3.54e-13 70.5
MS.gene97960.t1 MTR_3g056100 37.805 82 49 2 332 412 258 338 5.10e-13 70.9
MS.gene97960.t1 MTR_3g056100 48.529 68 33 2 325 392 92 157 3.46e-12 68.2
MS.gene97960.t1 MTR_3g056100 37.805 82 49 2 332 412 271 351 5.36e-13 70.9
MS.gene97960.t1 MTR_3g056100 48.529 68 33 2 325 392 92 157 3.72e-12 68.2
MS.gene97960.t1 MTR_4g094588 49.180 61 30 1 332 392 178 237 6.11e-13 70.1
MS.gene97960.t1 MTR_7g062220 43.038 79 38 2 314 389 106 180 6.48e-13 69.7
MS.gene97960.t1 MTR_5g094430 41.791 67 38 1 332 398 364 429 8.17e-13 70.5
MS.gene97960.t1 MTR_5g094430 50.000 62 29 2 331 392 199 258 7.99e-12 67.4
MS.gene97960.t1 MTR_3g031220 50.000 66 31 2 331 396 197 260 1.24e-12 69.3
MS.gene97960.t1 MTR_3g031220 50.000 66 31 2 331 396 197 260 1.34e-12 69.7
MS.gene97960.t1 MTR_3g031220 43.548 62 34 1 332 393 365 425 4.79e-11 65.1
MS.gene97960.t1 MTR_3g095040 49.206 63 29 3 332 393 118 178 1.52e-12 66.6
MS.gene97960.t1 MTR_5g094430 41.791 67 38 1 332 398 252 317 1.52e-12 69.3
MS.gene97960.t1 MTR_5g094430 50.000 62 29 2 331 392 87 146 1.29e-11 66.6
MS.gene97960.t1 MTR_5g094430 41.791 67 38 1 332 398 230 295 1.65e-12 69.3
MS.gene97960.t1 MTR_5g094430 50.000 62 29 2 331 392 65 124 1.47e-11 66.2
MS.gene97960.t1 MTR_2g033820 46.774 62 32 1 332 393 203 263 1.91e-12 68.9
MS.gene97960.t1 MTR_4g122530 38.571 70 42 1 332 401 208 276 1.91e-12 68.9
MS.gene97960.t1 MTR_5g067680 46.774 62 31 1 328 387 198 259 2.16e-12 68.6
MS.gene97960.t1 MTR_5g074400 44.444 63 34 1 332 394 420 481 2.45e-12 69.3
MS.gene97960.t1 MTR_5g074400 53.226 62 27 2 331 392 242 301 4.51e-12 68.2
MS.gene97960.t1 MTR_3g090860 37.209 86 45 3 310 387 106 190 2.65e-12 68.2
MS.gene97960.t1 MTR_5g043880 38.235 102 53 3 303 404 96 187 4.08e-12 66.6
MS.gene97960.t1 MTR_2g045360 41.667 60 35 0 333 392 212 271 5.66e-12 67.8
MS.gene97960.t1 MTR_3g106060 44.828 58 32 0 332 389 138 195 8.31e-12 66.2
MS.gene97960.t1 MTR_8g092010 48.387 62 29 3 332 392 108 167 1.00e-11 63.9
MS.gene97960.t1 MTR_1g077780 44.776 67 36 1 332 398 62 127 1.04e-11 62.8
MS.gene97960.t1 MTR_3g053330 33.708 89 47 1 304 392 235 311 1.37e-11 66.6
MS.gene97960.t1 MTR_8g027860 37.374 99 52 3 299 387 95 193 1.79e-11 65.5
MS.gene97960.t1 MTR_4g052030 52.727 55 14 1 335 389 8 50 1.83e-11 59.3
MS.gene97960.t1 MTR_2g105060 41.935 62 36 0 332 393 94 155 4.92e-11 63.2
MS.gene97960.t1 MTR_4g007060 39.744 78 46 1 332 408 128 205 5.06e-11 63.5
MS.gene97960.t1 MTR_4g132430 30.435 115 65 3 280 392 86 187 5.58e-11 64.3
MS.gene97960.t1 MTR_7g110720 39.130 69 41 1 325 392 181 249 6.78e-11 64.3
MS.gene97960.t1 MTR_4g007060 39.744 78 46 1 332 408 162 239 6.78e-11 63.5
MS.gene97960.t1 MTR_5g097490 46.667 60 31 1 333 392 253 311 7.69e-11 63.9
MS.gene97960.t1 MTR_7g110720 39.130 69 41 1 325 392 208 276 8.10e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97960.t1 AT5G52830 54.545 99 43 2 309 407 143 239 2.10e-28 115
MS.gene97960.t1 AT4G01250 37.500 152 84 5 260 409 62 204 3.03e-25 105
MS.gene97960.t1 AT4G23550 47.872 94 48 1 316 409 124 216 9.15e-22 95.5
MS.gene97960.t1 AT5G45050 51.613 93 43 2 309 401 1019 1109 4.25e-21 96.7
MS.gene97960.t1 AT5G45050 51.613 93 43 2 309 401 1158 1248 5.92e-21 96.3
MS.gene97960.t1 AT5G45050 51.613 93 43 2 309 401 1130 1220 6.05e-21 96.3
MS.gene97960.t1 AT1G30650 56.522 69 29 1 333 401 218 285 3.37e-19 89.7
MS.gene97960.t1 AT2G34830 56.522 69 29 1 333 401 216 283 3.46e-19 89.7
MS.gene97960.t1 AT2G34830 56.522 69 29 1 333 401 225 292 3.76e-19 89.7
MS.gene97960.t1 AT4G31550 52.308 65 31 0 333 397 247 311 3.84e-19 88.2
MS.gene97960.t1 AT4G31550 52.308 65 31 0 333 397 246 310 4.01e-19 88.2
MS.gene97960.t1 AT2G23320 56.140 57 25 0 333 389 241 297 1.90e-18 86.3
MS.gene97960.t1 AT5G28650 51.515 66 32 0 333 398 263 328 4.15e-18 85.5
MS.gene97960.t1 AT4G24240 48.810 84 38 2 310 389 256 338 4.42e-18 85.5
MS.gene97960.t1 AT2G24570 49.231 65 33 0 333 397 244 308 4.60e-18 85.1
MS.gene97960.t1 AT3G04670 51.515 66 32 0 333 398 263 328 5.50e-18 85.1
MS.gene97960.t1 AT1G29280 42.857 98 52 2 296 389 34 131 1.25e-17 82.8
MS.gene97960.t1 AT3G58710 51.471 68 33 0 330 397 69 136 3.28e-17 81.6
MS.gene97960.t1 AT3G58710 51.471 68 33 0 330 397 68 135 3.30e-17 81.6
MS.gene97960.t1 AT3G01080 47.436 78 36 3 328 405 201 273 1.59e-16 80.5
MS.gene97960.t1 AT3G01080 47.436 78 36 3 328 405 201 273 4.30e-16 80.5
MS.gene97960.t1 AT3G01080 47.541 61 31 1 332 392 344 403 3.56e-14 74.7
MS.gene97960.t1 AT3G01080 47.436 78 36 3 328 405 163 235 4.40e-16 80.1
MS.gene97960.t1 AT3G01080 47.541 61 31 1 332 392 306 365 4.59e-14 73.9
MS.gene97960.t1 AT2G30590 54.237 59 27 0 333 391 314 372 6.51e-16 79.3
MS.gene97960.t1 AT2G03340 45.333 75 40 1 332 406 415 488 8.17e-15 76.6
MS.gene97960.t1 AT2G03340 48.571 70 34 2 328 397 246 313 1.85e-13 72.4
MS.gene97960.t1 AT3G62340 40.476 84 48 2 332 415 118 199 1.01e-14 74.7
MS.gene97960.t1 AT2G21900 39.362 94 52 2 305 394 78 170 1.42e-14 72.8
MS.gene97960.t1 AT4G30935 35.780 109 57 3 296 392 283 390 1.62e-14 75.5
MS.gene97960.t1 AT2G38470 50.000 80 36 3 313 392 167 242 2.02e-14 75.5
MS.gene97960.t1 AT2G38470 44.444 63 34 1 332 394 362 423 1.13e-12 70.1
MS.gene97960.t1 AT4G26440 48.000 75 35 3 329 402 175 246 4.27e-14 74.7
MS.gene97960.t1 AT4G26440 37.805 82 50 1 332 413 372 452 1.33e-11 67.0
MS.gene97960.t1 AT2G47260 36.522 115 67 3 305 415 148 260 5.44e-14 73.2
MS.gene97960.t1 AT5G56270 50.000 72 34 2 329 400 270 339 9.64e-14 73.6
MS.gene97960.t1 AT5G56270 44.444 63 34 1 332 394 487 548 1.05e-12 70.5
MS.gene97960.t1 AT2G40740 39.080 87 48 2 306 387 144 230 1.87e-13 71.2
MS.gene97960.t1 AT2G40740 39.080 87 48 2 306 387 153 239 2.37e-13 70.9
MS.gene97960.t1 AT1G13960 42.353 85 42 3 313 392 205 287 2.69e-13 72.0
MS.gene97960.t1 AT1G13960 47.541 61 31 1 332 392 409 468 3.64e-13 71.6
MS.gene97960.t1 AT2G30250 50.000 60 29 1 333 392 329 387 3.13e-13 71.2
MS.gene97960.t1 AT2G30250 48.387 62 30 2 331 392 165 224 1.33e-11 66.2
MS.gene97960.t1 AT5G43290 55.172 58 25 1 332 389 114 170 3.19e-13 70.1
MS.gene97960.t1 AT1G13960 47.436 78 36 3 328 405 72 144 5.31e-13 70.5
MS.gene97960.t1 AT1G13960 47.541 61 31 1 332 392 256 315 6.43e-13 70.1
MS.gene97960.t1 AT2G04880 48.333 60 30 1 333 392 308 366 1.04e-12 70.1
MS.gene97960.t1 AT2G04880 48.333 60 30 1 333 392 284 342 1.05e-12 70.1
MS.gene97960.t1 AT5G07100 37.000 100 58 3 331 427 116 213 1.14e-12 68.9
MS.gene97960.t1 AT5G07100 40.580 69 40 1 332 400 234 301 3.81e-12 67.4
MS.gene97960.t1 AT1G64000 38.095 84 48 3 307 389 90 170 1.33e-12 66.6
MS.gene97960.t1 AT1G69310 36.893 103 55 3 303 405 119 211 1.54e-12 68.2
MS.gene97960.t1 AT1G69310 36.893 103 55 3 303 405 119 211 1.54e-12 68.2
MS.gene97960.t1 AT1G69310 36.893 103 55 3 303 405 119 211 1.54e-12 68.2
MS.gene97960.t1 AT2G37260 38.095 84 48 2 309 389 323 405 1.58e-12 69.3
MS.gene97960.t1 AT2G37260 49.254 67 32 2 328 394 161 225 1.31e-11 66.6
MS.gene97960.t1 AT1G80840 43.548 62 35 0 332 393 146 207 1.85e-12 68.2
MS.gene97960.t1 AT2G37260 38.095 84 48 2 309 389 243 325 2.47e-12 68.2
MS.gene97960.t1 AT2G37260 49.254 67 32 2 328 394 81 145 2.16e-11 65.5
MS.gene97960.t1 AT2G46400 43.182 88 45 3 305 387 74 161 2.53e-12 67.8
MS.gene97960.t1 AT2G37260 38.095 84 48 2 309 389 241 323 2.65e-12 68.2
MS.gene97960.t1 AT2G37260 49.254 67 32 2 328 394 79 143 2.42e-11 65.1
MS.gene97960.t1 AT5G41570 40.000 85 48 3 307 389 71 154 2.86e-12 65.5
MS.gene97960.t1 AT5G07100 40.698 86 39 2 331 405 23 107 3.21e-12 66.2
MS.gene97960.t1 AT5G07100 44.262 61 33 1 332 392 141 200 1.13e-11 64.7
MS.gene97960.t1 AT5G07100 40.698 86 39 2 331 405 23 107 3.21e-12 66.2
MS.gene97960.t1 AT5G07100 44.262 61 33 1 332 392 141 200 1.13e-11 64.7
MS.gene97960.t1 AT5G07100 40.698 86 39 2 331 405 23 107 3.21e-12 66.2
MS.gene97960.t1 AT5G07100 44.262 61 33 1 332 392 141 200 1.13e-11 64.7
MS.gene97960.t1 AT5G07100 40.698 86 39 2 331 405 23 107 3.21e-12 66.2
MS.gene97960.t1 AT5G07100 44.262 61 33 1 332 392 141 200 1.13e-11 64.7
MS.gene97960.t1 AT1G29860 43.478 69 38 1 332 400 136 203 4.06e-12 67.0
MS.gene97960.t1 AT1G55600 41.333 75 42 2 318 392 294 366 6.09e-12 67.8
MS.gene97960.t1 AT4G18170 41.026 78 44 2 312 389 153 228 6.65e-12 66.6
MS.gene97960.t1 AT5G45260 37.037 108 59 4 303 408 1185 1285 7.04e-12 68.2
MS.gene97960.t1 AT5G49520 44.828 58 31 1 332 389 221 277 8.07e-12 67.0
MS.gene97960.t1 AT5G26170 48.276 58 29 1 332 389 113 169 1.01e-11 63.5
MS.gene97960.t1 AT4G26640 41.463 82 43 3 331 412 170 246 1.18e-11 67.0
MS.gene97960.t1 AT4G26640 40.984 61 35 1 332 392 341 400 1.92e-11 66.2
MS.gene97960.t1 AT4G26640 41.463 82 43 3 331 412 210 286 1.21e-11 67.0
MS.gene97960.t1 AT4G26640 40.984 61 35 1 332 392 381 440 1.97e-11 66.2
MS.gene97960.t1 AT4G26640 41.463 82 43 3 331 412 138 214 1.53e-11 66.6
MS.gene97960.t1 AT4G26640 40.984 61 35 1 332 392 309 368 2.37e-11 65.9
MS.gene97960.t1 AT4G26640 41.463 82 43 3 331 412 34 110 1.94e-11 65.9
MS.gene97960.t1 AT4G26640 40.984 61 35 1 332 392 205 264 2.64e-11 65.5
MS.gene97960.t1 AT4G26640 41.463 82 43 3 331 412 34 110 1.94e-11 65.9
MS.gene97960.t1 AT4G26640 40.984 61 35 1 332 392 205 264 2.64e-11 65.5
MS.gene97960.t1 AT4G26640 41.463 82 43 3 331 412 34 110 1.94e-11 65.9
MS.gene97960.t1 AT4G26640 40.984 61 35 1 332 392 205 264 2.64e-11 65.5
MS.gene97960.t1 AT4G26640 41.463 82 43 3 331 412 34 110 1.94e-11 65.9
MS.gene97960.t1 AT4G26640 40.984 61 35 1 332 392 205 264 2.64e-11 65.5
MS.gene97960.t1 AT2G44745 34.694 98 62 2 293 389 105 201 3.59e-11 63.2
MS.gene97960.t1 AT5G46350 46.552 58 30 1 332 389 183 239 3.61e-11 64.7
MS.gene97960.t1 AT3G01970 40.845 71 39 2 332 400 65 134 6.48e-11 60.8
MS.gene97960.t1 AT4G23810 36.957 92 52 2 302 387 124 215 8.68e-11 63.5

Find 127 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAGGCGATTCCAAGTTTC+TGG 0.163271 8.4:+33342934 None:intergenic
TTCGGTTTAAGTGGGGTAAT+TGG 0.192042 8.4:+33345122 None:intergenic
ACTACAAATGTAGAAGTTTC+TGG 0.203501 8.4:-33343137 MS.gene97960:CDS
AGTCTCTGATGACTTGTTTC+GGG 0.224844 8.4:+33342990 None:intergenic
GGTAGTGATGGTTGGGATAC+TGG 0.266171 8.4:+33345028 None:intergenic
TCGGTTTAAGTGGGGTAATT+GGG 0.278216 8.4:+33345123 None:intergenic
TGGATGTGGAGACCCTTTAA+TGG 0.287579 8.4:+33344195 None:intergenic
TGGAGGTGGAGTTTCAAAAT+TGG 0.294278 8.4:+33345241 None:intergenic
TGATAGGGGTGGTGGTGGTG+AGG 0.314794 8.4:+33344712 None:intergenic
TAGTCTCTGATGACTTGTTT+CGG 0.323555 8.4:+33342989 None:intergenic
TAGTGAAGATGGTGGTAGTG+GGG 0.325049 8.4:+33344772 None:intergenic
CTCCAATGGACAATGATGAT+TGG 0.334060 8.4:-33345319 None:intergenic
CAAAATTTAAATCAAGAAAA+AGG 0.335426 8.4:-33344398 MS.gene97960:intron
AGGGGTGGTGGTGGTGAGGG+TGG 0.335816 8.4:+33344716 None:intergenic
TTGAGGGGATATGATGTTAT+TGG 0.344141 8.4:+33345202 None:intergenic
GTAGTTGATTGCGCTTTCTC+AGG 0.345960 8.4:+33344478 None:intergenic
GGAGTTTCAAAATTGGTGTT+AGG 0.348694 8.4:+33345248 None:intergenic
ATGAAATCATTCGGTTTAAG+TGG 0.356968 8.4:+33345113 None:intergenic
ACTTATGTTGTGACATATAA+AGG 0.361618 8.4:-33343066 MS.gene97960:CDS
GGATATGATGTTATTGGTTG+TGG 0.366736 8.4:+33345208 None:intergenic
GAATGGATGATGGTGCTTGA+GGG 0.367239 8.4:+33344984 None:intergenic
TGCGATTTCAATGCGGGCAT+GGG 0.376229 8.4:+33344551 None:intergenic
TACACTTCATTGTTACGGTT+TGG 0.377794 8.4:+33344585 None:intergenic
GGATGTGGAGACCCTTTAAT+GGG 0.385486 8.4:+33344196 None:intergenic
GTTGTAGGGATAGTAGTTGT+AGG 0.387880 8.4:+33344747 None:intergenic
GTTGGGGTGGTAGTGATGGT+TGG 0.392907 8.4:+33345020 None:intergenic
GTTGTGGTGGTTAGAGTTGG+AGG 0.394427 8.4:+33345224 None:intergenic
GGTAGTGAAGATGGTGGTAG+TGG 0.395152 8.4:+33344770 None:intergenic
AGGGTGGCGAATGTGGTTGT+AGG 0.396346 8.4:+33344732 None:intergenic
TTTGTTCGAGGTAGTAGAAA+TGG 0.396886 8.4:+33344456 None:intergenic
GATAGGGGTGGTGGTGGTGA+GGG 0.408981 8.4:+33344713 None:intergenic
AGAGGTGGGGATAGTGGTGT+TGG 0.411378 8.4:+33344812 None:intergenic
TCCAATGGACAATGATGATT+GGG 0.413894 8.4:-33345318 None:intergenic
TTGGTTGTGGTGGTTAGAGT+TGG 0.415176 8.4:+33345221 None:intergenic
CGCTTTCTCAGGGGTTGTTG+TGG 0.415304 8.4:+33344489 None:intergenic
GTTGGGATACTGGTGATAGT+AGG 0.415858 8.4:+33345038 None:intergenic
GTGGTGATGGTAGGTATGAT+AGG 0.418388 8.4:+33344696 None:intergenic
GGTGGTGAGGGTGGCGAATG+TGG 0.420171 8.4:+33344725 None:intergenic
TTGGGGTGGTAGTGATGGTT+GGG 0.421087 8.4:+33345021 None:intergenic
GGAATGGATGATGGTGCTTG+AGG 0.422057 8.4:+33344983 None:intergenic
CTACAAATGTAGAAGTTTCT+GGG 0.423709 8.4:-33343136 MS.gene97960:CDS
TAGAAGTTTCTGGGATTGTT+CGG 0.428728 8.4:-33343127 MS.gene97960:CDS
GATGGTAGAGGTGGGGATAG+TGG 0.437887 8.4:+33344806 None:intergenic
TACTGGTGATAGTAGGGGTG+GGG 0.441394 8.4:+33345045 None:intergenic
AATTGCAGTATCATCATGTT+AGG 0.441768 8.4:+33342917 None:intergenic
AGTTGTAGGGGTAGTGAAGA+TGG 0.442076 8.4:+33344761 None:intergenic
AGTGGTTGGGGTGGTAGTGA+TGG 0.446309 8.4:+33345016 None:intergenic
TCAAGCTCTATGAAATCATT+CGG 0.447306 8.4:+33345104 None:intergenic
ACGCGCCTTCAGAAGATTCA+TGG 0.450159 8.4:-33344243 MS.gene97960:CDS
TTGCGATTTCAATGCGGGCA+TGG 0.450427 8.4:+33344550 None:intergenic
TTATGCATTGGCAAAGAAGC+TGG 0.451227 8.4:-33342964 MS.gene97960:CDS
GATACTGGTGATAGTAGGGG+TGG 0.452157 8.4:+33345043 None:intergenic
TTGGGATACTGGTGATAGTA+GGG 0.453252 8.4:+33345039 None:intergenic
GAGGTGGGGATAGTGGTGTT+GGG 0.454610 8.4:+33344813 None:intergenic
AAACATACACTTCATTGTTA+CGG 0.454894 8.4:+33344580 None:intergenic
AGGTATGATAGGGGTGGTGG+TGG 0.455382 8.4:+33344707 None:intergenic
CTGGGATTATGCCAGAAACT+TGG 0.455424 8.4:-33342945 MS.gene97960:CDS
TTGTAGGGATAGTAGTTGTA+GGG 0.457171 8.4:+33344748 None:intergenic
TGGGGTTGAGTTATTCTCTT+CGG 0.460147 8.4:+33345142 None:intergenic
AGTGAAGATGGTGGTAGTGG+GGG 0.472105 8.4:+33344773 None:intergenic
GTAGTGAAGATGGTGGTAGT+GGG 0.473726 8.4:+33344771 None:intergenic
GTTAATCAGAACTCCGTTGT+TGG 0.474046 8.4:-33343018 MS.gene97960:CDS
GAATGCACAATCAAAATTGT+TGG 0.476039 8.4:+33344527 None:intergenic
TAGTTGATTGCGCTTTCTCA+GGG 0.481392 8.4:+33344479 None:intergenic
TATGATGTTATTGGTTGTGG+TGG 0.483931 8.4:+33345211 None:intergenic
GTTGTTGTTCGATGAGTGTT+GGG 0.487764 8.4:+33344889 None:intergenic
GTTGGTTGCGATTTCAATGC+GGG 0.488499 8.4:+33344545 None:intergenic
GGTAGGAGTAGTGGTTGGGG+TGG 0.493221 8.4:+33345007 None:intergenic
CGGTTTAAGTGGGGTAATTG+GGG 0.494269 8.4:+33345124 None:intergenic
GTGGTGGTTAGAGTTGGAGG+TGG 0.500554 8.4:+33345227 None:intergenic
ACTGGTGATAGTAGGGGTGG+GGG 0.505014 8.4:+33345046 None:intergenic
GGTAGGTATGATAGGGGTGG+TGG 0.507049 8.4:+33344704 None:intergenic
ACGGAGTTCTGATTAACTGC+TGG 0.513492 8.4:+33343024 None:intergenic
TGAAATCATTCGGTTTAAGT+GGG 0.513951 8.4:+33345114 None:intergenic
TGATGGTATTGGTGGTAATG+TGG 0.520234 8.4:+33344961 None:intergenic
GGTAATGTGGGAATGGATGA+TGG 0.522120 8.4:+33344974 None:intergenic
TGTTGGGAAATTAGAAAAGG+TGG 0.536200 8.4:+33344905 None:intergenic
GGGTGGCGAATGTGGTTGTA+GGG 0.537742 8.4:+33344733 None:intergenic
TGGTGATGGTAGGTATGATA+GGG 0.538358 8.4:+33344697 None:intergenic
CGCGCCTTCAGAAGATTCAT+GGG 0.542206 8.4:-33344242 MS.gene97960:CDS
ATTAGTCATTGTAGTGGTGA+TGG 0.543642 8.4:+33344683 None:intergenic
GATGGTATTGGTGGTAATGT+GGG 0.544952 8.4:+33344962 None:intergenic
TATTGGTGGTAATGTGGGAA+TGG 0.547181 8.4:+33344967 None:intergenic
TGTTGTTGTTCGATGAGTGT+TGG 0.549796 8.4:+33344888 None:intergenic
TCCCAATCATCATTGTCCAT+TGG 0.550956 8.4:+33345317 None:intergenic
CACAACATAAGTGTTCTCTC+TGG 0.551048 8.4:+33343077 None:intergenic
TATGCATTGGCAAAGAAGCT+GGG 0.552056 8.4:-33342963 MS.gene97960:CDS
GGTGCGAGCAGTGATGGTAG+AGG 0.552504 8.4:+33344794 None:intergenic
GGTGTTAGGAGTAGCAAAGG+TGG 0.553041 8.4:+33345262 None:intergenic
GTCTCTGATGACTTGTTTCG+GGG 0.560180 8.4:+33342991 None:intergenic
CATGACACACAAATGTCACT+TGG 0.560624 8.4:+33344275 None:intergenic
GTTGTTGTGGAATCGATGGA+TGG 0.561178 8.4:+33344502 None:intergenic
AATGGATGATGGTGCTTGAG+GGG 0.561207 8.4:+33344985 None:intergenic
GCGAGCAGTGATGGTAGAGG+TGG 0.562072 8.4:+33344797 None:intergenic
ATGGATGATGGTGCTTGAGG+GGG 0.562359 8.4:+33344986 None:intergenic
GAGTGTTGGGAAATTAGAAA+AGG 0.562639 8.4:+33344902 None:intergenic
ACTAGTGTTAGTGATGGTAT+TGG 0.562993 8.4:+33344950 None:intergenic
AAACTAAAATTATCAAAGCA+TGG 0.563759 8.4:+33345167 None:intergenic
GCGATTTCAATGCGGGCATG+GGG 0.564606 8.4:+33344552 None:intergenic
AGGTGGGGATAGTGGTGTTG+GGG 0.565500 8.4:+33344814 None:intergenic
ATACTGGTGATAGTAGGGGT+GGG 0.572466 8.4:+33345044 None:intergenic
TGTAGGGATAGTAGTTGTAG+GGG 0.577471 8.4:+33344749 None:intergenic
CGAGCAGTGATGGTAGAGGT+GGG 0.579521 8.4:+33344798 None:intergenic
CTCTGATGACTTGTTTCGGG+GGG 0.579832 8.4:+33342993 None:intergenic
TTAAAGGGTCTCCACATCCA+AGG 0.584498 8.4:-33344192 MS.gene97960:intron
CATGCCCATGAATCTTCTGA+AGG 0.586868 8.4:+33344238 None:intergenic
ATGAAAACTAGTGTTAGTGA+TGG 0.596957 8.4:+33344944 None:intergenic
CTTCAGAAGATTCATGGGCA+TGG 0.598976 8.4:-33344237 MS.gene97960:CDS
AGGGGTTGTTGTGGAATCGA+TGG 0.600143 8.4:+33344498 None:intergenic
TCAGAGACTAGATTATGCAT+TGG 0.604262 8.4:-33342976 MS.gene97960:CDS
AGTGTTAGTGATGGTATTGG+TGG 0.606164 8.4:+33344953 None:intergenic
ATTATCAAAGCATGGAGGTG+TGG 0.607250 8.4:+33345175 None:intergenic
TGTAGGGGTAGTGAAGATGG+TGG 0.610749 8.4:+33344764 None:intergenic
ATTGGTGTTAGGAGTAGCAA+AGG 0.612014 8.4:+33345259 None:intergenic
GATGGTAGGTATGATAGGGG+TGG 0.629626 8.4:+33344701 None:intergenic
TGGGATACTGGTGATAGTAG+GGG 0.637481 8.4:+33345040 None:intergenic
GTCATTGTAGTGGTGATGGT+AGG 0.637511 8.4:+33344687 None:intergenic
GACATTTGTGTGTCATGTGA+GGG 0.639834 8.4:-33344269 MS.gene97960:CDS
GAAATCATTCGGTTTAAGTG+GGG 0.641149 8.4:+33345115 None:intergenic
ACTAGTATTAGTCATTGTAG+TGG 0.643876 8.4:+33344677 None:intergenic
TGACATTTGTGTGTCATGTG+AGG 0.659901 8.4:-33344270 MS.gene97960:CDS
TCTCTGATGACTTGTTTCGG+GGG 0.661521 8.4:+33342992 None:intergenic
AGTTGATTGCGCTTTCTCAG+GGG 0.662828 8.4:+33344480 None:intergenic
GGTGATGGTAGGTATGATAG+GGG 0.673438 8.4:+33344698 None:intergenic
TGTTGGTTGCGATTTCAATG+CGG 0.679868 8.4:+33344544 None:intergenic
GAGCAGTGATGGTAGAGGTG+GGG 0.706277 8.4:+33344799 None:intergenic
CTAAAATTATCAAAGCATGG+AGG 0.746022 8.4:+33345170 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATATAATAAATAAT+AGG + chr8.4:33343885-33343904 None:intergenic 0.0%
!! AAATTTATTTATAGTGAAAT+TGG - chr8.4:33344588-33344607 MS.gene97960:CDS 10.0%
!!! GGAATATTTTTTAAAAAAAA+AGG - chr8.4:33344744-33344763 MS.gene97960:CDS 10.0%
!! AATATATACATTTATGTGTA+TGG - chr8.4:33345010-33345029 MS.gene97960:CDS 15.0%
!! CAAAATTTAAATCAAGAAAA+AGG - chr8.4:33343846-33343865 MS.gene97960:intron 15.0%
!! TATCAAAATAAGGATTAAAA+TGG + chr8.4:33344626-33344645 None:intergenic 15.0%
!! TTAAAAAAAAAGGAAGAAAA+AGG - chr8.4:33344754-33344773 MS.gene97960:CDS 15.0%
!!! CTTTTTCTTGATTTAAATTT+TGG + chr8.4:33343848-33343867 None:intergenic 15.0%
!!! GATTTAAATTTTGGTTTTTT+CGG + chr8.4:33343839-33343858 None:intergenic 15.0%
!!! GATTTTATTCTATCAAAATA+AGG + chr8.4:33344636-33344655 None:intergenic 15.0%
!! AAACTAAAATTATCAAAGCA+TGG + chr8.4:33343080-33343099 None:intergenic 20.0%
!! ATAATATGAATAAAGTTTGC+AGG - chr8.4:33344685-33344704 MS.gene97960:CDS 20.0%
!! ATTAAAATAGTACGATTTAG+CGG - chr8.4:33345041-33345060 MS.gene97960:CDS 20.0%
!!! AAAGTGAAAGATATTGATTA+TGG + chr8.4:33344878-33344897 None:intergenic 20.0%
!!! AATATTCCACTTTTTTCTTT+TGG + chr8.4:33344732-33344751 None:intergenic 20.0%
!!! ATATCAATGAATGATTTTGT+AGG - chr8.4:33345080-33345099 MS.gene97960:CDS 20.0%
!!! ATGAAATGCATAATGATTTT+AGG + chr8.4:33343927-33343946 None:intergenic 20.0%
!!! ATGTACTATTAATTGCTTTT+TGG - chr8.4:33344447-33344466 MS.gene97960:CDS 20.0%
! AAACATACACTTCATTGTTA+CGG + chr8.4:33343667-33343686 None:intergenic 25.0%
! AAAGAGAGGATATATTTGTA+GGG - chr8.4:33344777-33344796 MS.gene97960:CDS 25.0%
! ACTTATGTTGTGACATATAA+AGG - chr8.4:33345178-33345197 MS.gene97960:CDS 25.0%
! AGGATTAAAATGGATATTGA+AGG + chr8.4:33344616-33344635 None:intergenic 25.0%
! GGATTAAAATGGATATTGAA+GGG + chr8.4:33344615-33344634 None:intergenic 25.0%
! TAAAGACCAAAAGAAAAAAG+TGG - chr8.4:33344723-33344742 MS.gene97960:CDS 25.0%
! TTAACTACAATTCTTTCCAA+TGG + chr8.4:33344285-33344304 None:intergenic 25.0%
!! AAAAATCTAGAATTTGTTCG+AGG + chr8.4:33343803-33343822 None:intergenic 25.0%
!! TATTAGAGAGTTTTACGTAA+AGG + chr8.4:33344994-33345013 None:intergenic 25.0%
!!! CAAAAAATGTTACTTTTGCA+GGG + chr8.4:33344490-33344509 None:intergenic 25.0%
ACAATTACACCTTTGATCTT+TGG - chr8.4:33344538-33344557 MS.gene97960:CDS 30.0%
ACTACAAATGTAGAAGTTTC+TGG - chr8.4:33345107-33345126 MS.gene97960:CDS 30.0%
ACTAGTATTAGTCATTGTAG+TGG + chr8.4:33343570-33343589 None:intergenic 30.0%
ATGAAAACTAGTGTTAGTGA+TGG + chr8.4:33343303-33343322 None:intergenic 30.0%
ATGAAATCATTCGGTTTAAG+TGG + chr8.4:33343134-33343153 None:intergenic 30.0%
ATGGAGAAAAACCCATTAAA+GGG - chr8.4:33344037-33344056 MS.gene97960:intron 30.0%
CAAAATTCTTTCCAATGGTA+AGG + chr8.4:33344201-33344220 None:intergenic 30.0%
CGTTTAATGCATAAAAACCT+TGG + chr8.4:33344072-33344091 None:intergenic 30.0%
CTAAAATTATCAAAGCATGG+AGG + chr8.4:33343077-33343096 None:intergenic 30.0%
CTACAAATGTAGAAGTTTCT+GGG - chr8.4:33345108-33345127 MS.gene97960:CDS 30.0%
GAAAGAGAGGATATATTTGT+AGG - chr8.4:33344776-33344795 MS.gene97960:CDS 30.0%
GAATGCACAATCAAAATTGT+TGG + chr8.4:33343720-33343739 None:intergenic 30.0%
GGTAACAAAATTCTTTCCAA+TGG + chr8.4:33344206-33344225 None:intergenic 30.0%
GTAGTTAAATGCAACATATG+TGG - chr8.4:33344297-33344316 MS.gene97960:intron 30.0%
TACAATTCTTTCCAATGGTA+AGG + chr8.4:33344280-33344299 None:intergenic 30.0%
TATGGAGAAAAACCCATTAA+AGG - chr8.4:33344036-33344055 MS.gene97960:intron 30.0%
TCAAGCTCTATGAAATCATT+CGG + chr8.4:33343143-33343162 None:intergenic 30.0%
TGAAATCATTCGGTTTAAGT+GGG + chr8.4:33343133-33343152 None:intergenic 30.0%
! CACAATTTAAAACCCTAGTT+GGG + chr8.4:33344240-33344259 None:intergenic 30.0%
! CACTATTTAAAACTCTAGGT+GGG + chr8.4:33344161-33344180 None:intergenic 30.0%
! CGATCACTATTTAAAACTCT+AGG + chr8.4:33344165-33344184 None:intergenic 30.0%
! TCACAATTTAAAACCCTAGT+TGG + chr8.4:33344241-33344260 None:intergenic 30.0%
! TCACTATTTAAAACTCTAGG+TGG + chr8.4:33344162-33344181 None:intergenic 30.0%
!! AGAAAAGGTGGAATTTTGAT+TGG + chr8.4:33343330-33343349 None:intergenic 30.0%
!!! GCAAAAAATGTTACTTTTGC+AGG + chr8.4:33344491-33344510 None:intergenic 30.0%
AAGGAAGAAAAAGGAAAGAG+AGG - chr8.4:33344763-33344782 MS.gene97960:CDS 35.0%
ACTAGTGTTAGTGATGGTAT+TGG + chr8.4:33343297-33343316 None:intergenic 35.0%
ATATGTCACTCAGTGTAAGA+CGG - chr8.4:33344954-33344973 MS.gene97960:CDS 35.0%
ATGCATAAAAACCTTGGATG+TGG + chr8.4:33344066-33344085 None:intergenic 35.0%
ATTAGTCATTGTAGTGGTGA+TGG + chr8.4:33343564-33343583 None:intergenic 35.0%
CATCAAAGACCAAAGATCAA+AGG + chr8.4:33344550-33344569 None:intergenic 35.0%
GAAATCATTCGGTTTAAGTG+GGG + chr8.4:33343132-33343151 None:intergenic 35.0%
TACACTTCATTGTTACGGTT+TGG + chr8.4:33343662-33343681 None:intergenic 35.0%
TCAGAGACTAGATTATGCAT+TGG - chr8.4:33345268-33345287 MS.gene97960:CDS 35.0%
TCATGGGCATGGAAAAAATA+TGG - chr8.4:33344018-33344037 MS.gene97960:intron 35.0%
TCTTACACTGAGTGACATAT+TGG + chr8.4:33344954-33344973 None:intergenic 35.0%
TGTTGGGAAATTAGAAAAGG+TGG + chr8.4:33343342-33343361 None:intergenic 35.0%
TTGAGGGGATATGATGTTAT+TGG + chr8.4:33343045-33343064 None:intergenic 35.0%
TTGTAGGGATAGTAGTTGTA+GGG + chr8.4:33343499-33343518 None:intergenic 35.0%
TTTGTTCGAGGTAGTAGAAA+TGG + chr8.4:33343791-33343810 None:intergenic 35.0%
! AACATATGTGGTCTTAATCG+CGG - chr8.4:33344309-33344328 MS.gene97960:intron 35.0%
! GGAGTTTCAAAATTGGTGTT+AGG + chr8.4:33342999-33343018 None:intergenic 35.0%
! GGATATGATGTTATTGGTTG+TGG + chr8.4:33343039-33343058 None:intergenic 35.0%
! TATGATGTTATTGGTTGTGG+TGG + chr8.4:33343036-33343055 None:intergenic 35.0%
! TTACGTAAAGGTATGCAATC+TGG + chr8.4:33344982-33345001 None:intergenic 35.0%
!! GAGTGTTGGGAAATTAGAAA+AGG + chr8.4:33343345-33343364 None:intergenic 35.0%
!! TAGAAGTTTCTGGGATTGTT+CGG - chr8.4:33345117-33345136 MS.gene97960:CDS 35.0%
!! TAGTCTCTGATGACTTGTTT+CGG + chr8.4:33345258-33345277 None:intergenic 35.0%
!! TTGTTTTTCCTAAACAGCAG+AGG + chr8.4:33344522-33344541 None:intergenic 35.0%
!!! GGTTTTAAATTGTGATCGCA+AGG - chr8.4:33344246-33344265 MS.gene97960:CDS 35.0%
!!! GGTTTTTTCGGATGTGTATT+TGG + chr8.4:33343827-33343846 None:intergenic 35.0%
AAGACCATGATCCTTACCAT+TGG - chr8.4:33344187-33344206 MS.gene97960:intron 40.0%
ATTATCAAAGCATGGAGGTG+TGG + chr8.4:33343072-33343091 None:intergenic 40.0%
CACAACATAAGTGTTCTCTC+TGG + chr8.4:33345170-33345189 None:intergenic 40.0%
CATGACACACAAATGTCACT+TGG + chr8.4:33343972-33343991 None:intergenic 40.0%
CTAATACACACACCCAACTA+GGG - chr8.4:33344225-33344244 MS.gene97960:CDS 40.0%
CTTTCCAATGGTAAGGATCA+TGG + chr8.4:33344194-33344213 None:intergenic 40.0%
GACATTTGTGTGTCATGTGA+GGG - chr8.4:33343975-33343994 MS.gene97960:intron 40.0%
GTTAATCAGAACTCCGTTGT+TGG - chr8.4:33345226-33345245 MS.gene97960:CDS 40.0%
GTTGTAGGGATAGTAGTTGT+AGG + chr8.4:33343500-33343519 None:intergenic 40.0%
TAGTTGATTGCGCTTTCTCA+GGG + chr8.4:33343768-33343787 None:intergenic 40.0%
TCGGTTTAAGTGGGGTAATT+GGG + chr8.4:33343124-33343143 None:intergenic 40.0%
TGACATTTGTGTGTCATGTG+AGG - chr8.4:33343974-33343993 MS.gene97960:intron 40.0%
TGGAGGTGGAGTTTCAAAAT+TGG + chr8.4:33343006-33343025 None:intergenic 40.0%
TGGGGTTGAGTTATTCTCTT+CGG + chr8.4:33343105-33343124 None:intergenic 40.0%
TGTAGGGATAGTAGTTGTAG+GGG + chr8.4:33343498-33343517 None:intergenic 40.0%
TTCGGTTTAAGTGGGGTAAT+TGG + chr8.4:33343125-33343144 None:intergenic 40.0%
TTGGGATACTGGTGATAGTA+GGG + chr8.4:33343208-33343227 None:intergenic 40.0%
! AGTGTTAGTGATGGTATTGG+TGG + chr8.4:33343294-33343313 None:intergenic 40.0%
! GTGTCGCTAATTGCAAAGAA+TGG + chr8.4:33344377-33344396 None:intergenic 40.0%
! GTTGTTGTTCGATGAGTGTT+GGG + chr8.4:33343358-33343377 None:intergenic 40.0%
! TATGCATTGGCAAAGAAGCT+GGG - chr8.4:33345281-33345300 MS.gene97960:CDS 40.0%
! TATTGGTGGTAATGTGGGAA+TGG + chr8.4:33343280-33343299 None:intergenic 40.0%
! TGTTGGTTGCGATTTCAATG+CGG + chr8.4:33343703-33343722 None:intergenic 40.0%
! TGTTGTTGTTCGATGAGTGT+TGG + chr8.4:33343359-33343378 None:intergenic 40.0%
! TTATGCATTGGCAAAGAAGC+TGG - chr8.4:33345280-33345299 MS.gene97960:CDS 40.0%
!! AGTCTCTGATGACTTGTTTC+GGG + chr8.4:33345257-33345276 None:intergenic 40.0%
!! ATTGGTGTTAGGAGTAGCAA+AGG + chr8.4:33342988-33343007 None:intergenic 40.0%
!! GATGGTATTGGTGGTAATGT+GGG + chr8.4:33343285-33343304 None:intergenic 40.0%
!! TGATGGTATTGGTGGTAATG+TGG + chr8.4:33343286-33343305 None:intergenic 40.0%
!! TGGTGATGGTAGGTATGATA+GGG + chr8.4:33343550-33343569 None:intergenic 40.0%
AGGACCATGATCCTTACCAT+TGG - chr8.4:33344266-33344285 MS.gene97960:CDS 45.0%
AGTTGATTGCGCTTTCTCAG+GGG + chr8.4:33343767-33343786 None:intergenic 45.0%
AGTTGTAGGGGTAGTGAAGA+TGG + chr8.4:33343486-33343505 None:intergenic 45.0%
ATACTGGTGATAGTAGGGGT+GGG + chr8.4:33343203-33343222 None:intergenic 45.0%
CATGCCCATGAATCTTCTGA+AGG + chr8.4:33344009-33344028 None:intergenic 45.0%
CCTAATACACACACCCAACT+AGG - chr8.4:33344224-33344243 MS.gene97960:CDS 45.0%
CCTAGTTGGGTGTGTGTATT+AGG + chr8.4:33344227-33344246 None:intergenic 45.0%
CGGTTTAAGTGGGGTAATTG+GGG + chr8.4:33343123-33343142 None:intergenic 45.0%
CTGGGATTATGCCAGAAACT+TGG - chr8.4:33345299-33345318 MS.gene97960:CDS 45.0%
CTTCAGAAGATTCATGGGCA+TGG - chr8.4:33344007-33344026 MS.gene97960:intron 45.0%
GGATGTGGAGACCCTTTAAT+GGG + chr8.4:33344051-33344070 None:intergenic 45.0%
GGTAATGTGGGAATGGATGA+TGG + chr8.4:33343273-33343292 None:intergenic 45.0%
GTAGTTGATTGCGCTTTCTC+AGG + chr8.4:33343769-33343788 None:intergenic 45.0%
GTTAGGCGATTCCAAGTTTC+TGG + chr8.4:33345313-33345332 None:intergenic 45.0%
GTTGGGATACTGGTGATAGT+AGG + chr8.4:33343209-33343228 None:intergenic 45.0%
GTTGGTTGCGATTTCAATGC+GGG + chr8.4:33343702-33343721 None:intergenic 45.0%
GTTGTTGTGGAATCGATGGA+TGG + chr8.4:33343745-33343764 None:intergenic 45.0%
TGGATGTGGAGACCCTTTAA+TGG + chr8.4:33344052-33344071 None:intergenic 45.0%
TGGGATACTGGTGATAGTAG+GGG + chr8.4:33343207-33343226 None:intergenic 45.0%
TTAAAGGGTCTCCACATCCA+AGG - chr8.4:33344052-33344071 MS.gene97960:intron 45.0%
TTGGTTGTGGTGGTTAGAGT+TGG + chr8.4:33343026-33343045 None:intergenic 45.0%
! AATGGATGATGGTGCTTGAG+GGG + chr8.4:33343262-33343281 None:intergenic 45.0%
! ACGGAGTTCTGATTAACTGC+TGG + chr8.4:33345223-33345242 None:intergenic 45.0%
! GAATGGATGATGGTGCTTGA+GGG + chr8.4:33343263-33343282 None:intergenic 45.0%
! GGTGATGGTAGGTATGATAG+GGG + chr8.4:33343549-33343568 None:intergenic 45.0%
! GTAGTGAAGATGGTGGTAGT+GGG + chr8.4:33343476-33343495 None:intergenic 45.0%
! GTTTAGTGCCTCTGCTGTTT+AGG - chr8.4:33344511-33344530 MS.gene97960:CDS 45.0%
! TAGTGAAGATGGTGGTAGTG+GGG + chr8.4:33343475-33343494 None:intergenic 45.0%
!! ATGGAGGTGTGGTGTTTTGA+GGG + chr8.4:33343061-33343080 None:intergenic 45.0%
!! GTCATTGTAGTGGTGATGGT+AGG + chr8.4:33343560-33343579 None:intergenic 45.0%
!! GTCTCTGATGACTTGTTTCG+GGG + chr8.4:33345256-33345275 None:intergenic 45.0%
!! GTGGTGATGGTAGGTATGAT+AGG + chr8.4:33343551-33343570 None:intergenic 45.0%
!! TCTCTGATGACTTGTTTCGG+GGG + chr8.4:33345255-33345274 None:intergenic 45.0%
ACGCGCCTTCAGAAGATTCA+TGG - chr8.4:33344001-33344020 MS.gene97960:intron 50.0%
AGGGGTTGTTGTGGAATCGA+TGG + chr8.4:33343749-33343768 None:intergenic 50.0%
CGCGCCTTCAGAAGATTCAT+GGG - chr8.4:33344002-33344021 MS.gene97960:intron 50.0%
CTCTAGGTGGGTGTGTGTTT+AGG + chr8.4:33344149-33344168 None:intergenic 50.0%
GATACTGGTGATAGTAGGGG+TGG + chr8.4:33343204-33343223 None:intergenic 50.0%
GATGGTAGGTATGATAGGGG+TGG + chr8.4:33343546-33343565 None:intergenic 50.0%
GGTAGTGATGGTTGGGATAC+TGG + chr8.4:33343219-33343238 None:intergenic 50.0%
GGTGTTAGGAGTAGCAAAGG+TGG + chr8.4:33342985-33343004 None:intergenic 50.0%
GTTGTGGTGGTTAGAGTTGG+AGG + chr8.4:33343023-33343042 None:intergenic 50.0%
TACTGGTGATAGTAGGGGTG+GGG + chr8.4:33343202-33343221 None:intergenic 50.0%
TGCGATTTCAATGCGGGCAT+GGG + chr8.4:33343696-33343715 None:intergenic 50.0%
TGTAGGGGTAGTGAAGATGG+TGG + chr8.4:33343483-33343502 None:intergenic 50.0%
TTGCGATTTCAATGCGGGCA+TGG + chr8.4:33343697-33343716 None:intergenic 50.0%
! ATGGATGATGGTGCTTGAGG+GGG + chr8.4:33343261-33343280 None:intergenic 50.0%
! GGAATGGATGATGGTGCTTG+AGG + chr8.4:33343264-33343283 None:intergenic 50.0%
! GGTAGTGAAGATGGTGGTAG+TGG + chr8.4:33343477-33343496 None:intergenic 50.0%
! TTGGGGTGGTAGTGATGGTT+GGG + chr8.4:33343226-33343245 None:intergenic 50.0%
!! AGTGAAGATGGTGGTAGTGG+GGG + chr8.4:33343474-33343493 None:intergenic 50.0%
!! CATGGAGGTGTGGTGTTTTG+AGG + chr8.4:33343062-33343081 None:intergenic 50.0%
!! CTCTGATGACTTGTTTCGGG+GGG + chr8.4:33345254-33345273 None:intergenic 50.0%
!! TGGAGGTGTGGTGTTTTGAG+GGG + chr8.4:33343060-33343079 None:intergenic 50.0%
ACTGGTGATAGTAGGGGTGG+GGG + chr8.4:33343201-33343220 None:intergenic 55.0%
AGGGGGTAGGAGTAGTGGTT+GGG + chr8.4:33343244-33343263 None:intergenic 55.0%
AGGGTGGCGAATGTGGTTGT+AGG + chr8.4:33343515-33343534 None:intergenic 55.0%
CGAGCAGTGATGGTAGAGGT+GGG + chr8.4:33343449-33343468 None:intergenic 55.0%
CGCTTTCTCAGGGGTTGTTG+TGG + chr8.4:33343758-33343777 None:intergenic 55.0%
GAGCAGTGATGGTAGAGGTG+GGG + chr8.4:33343448-33343467 None:intergenic 55.0%
GATGGTAGAGGTGGGGATAG+TGG + chr8.4:33343441-33343460 None:intergenic 55.0%
GCGATTTCAATGCGGGCATG+GGG + chr8.4:33343695-33343714 None:intergenic 55.0%
GGGTGGCGAATGTGGTTGTA+GGG + chr8.4:33343514-33343533 None:intergenic 55.0%
GGTAGGTATGATAGGGGTGG+TGG + chr8.4:33343543-33343562 None:intergenic 55.0%
GTGGTGGTTAGAGTTGGAGG+TGG + chr8.4:33343020-33343039 None:intergenic 55.0%
GTTTCGGGGGGTTCCAACAA+CGG + chr8.4:33345242-33345261 None:intergenic 55.0%
! AGAGGTGGGGATAGTGGTGT+TGG + chr8.4:33343435-33343454 None:intergenic 55.0%
! AGGTATGATAGGGGTGGTGG+TGG + chr8.4:33343540-33343559 None:intergenic 55.0%
! AGGTGGGGATAGTGGTGTTG+GGG + chr8.4:33343433-33343452 None:intergenic 55.0%
! AGTGGTTGGGGTGGTAGTGA+TGG + chr8.4:33343231-33343250 None:intergenic 55.0%
! ATGATGGTGCTTGAGGGGGT+AGG + chr8.4:33343257-33343276 None:intergenic 55.0%
! GAGGTGGGGATAGTGGTGTT+GGG + chr8.4:33343434-33343453 None:intergenic 55.0%
! GTTGGGGTGGTAGTGATGGT+TGG + chr8.4:33343227-33343246 None:intergenic 55.0%
GAGGGGGTAGGAGTAGTGGT+TGG + chr8.4:33343245-33343264 None:intergenic 60.0%
GATAGTAGGGGTGGGGGTAG+TGG + chr8.4:33343195-33343214 None:intergenic 60.0%
GCGAGCAGTGATGGTAGAGG+TGG + chr8.4:33343450-33343469 None:intergenic 60.0%
GCTTGAGGGGGTAGGAGTAG+TGG + chr8.4:33343249-33343268 None:intergenic 60.0%
GGGGGTAGGAGTAGTGGTTG+GGG + chr8.4:33343243-33343262 None:intergenic 60.0%
GGTAGGAGTAGTGGTTGGGG+TGG + chr8.4:33343240-33343259 None:intergenic 60.0%
GGTGCGAGCAGTGATGGTAG+AGG + chr8.4:33343453-33343472 None:intergenic 60.0%
!! GATAGGGGTGGTGGTGGTGA+GGG + chr8.4:33343534-33343553 None:intergenic 60.0%
!! TGATAGGGGTGGTGGTGGTG+AGG + chr8.4:33343535-33343554 None:intergenic 60.0%
GGTGGTGAGGGTGGCGAATG+TGG + chr8.4:33343522-33343541 None:intergenic 65.0%
! AGTGGGGGTGCGAGCAGTGA+TGG + chr8.4:33343459-33343478 None:intergenic 65.0%
! GGGGTGGGGGTAGTGGTTGT+TGG + chr8.4:33343188-33343207 None:intergenic 65.0%
!! AGGGGTGGTGGTGGTGAGGG+TGG + chr8.4:33343531-33343550 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 33342930 33345336 33342930 ID=MS.gene97960
chr8.4 mRNA 33342930 33345336 33342930 ID=MS.gene97960.t1;Parent=MS.gene97960
chr8.4 exon 33344399 33345336 33344399 ID=MS.gene97960.t1.exon1;Parent=MS.gene97960.t1
chr8.4 CDS 33344399 33345336 33344399 ID=cds.MS.gene97960.t1;Parent=MS.gene97960.t1
chr8.4 exon 33344193 33344309 33344193 ID=MS.gene97960.t1.exon2;Parent=MS.gene97960.t1
chr8.4 CDS 33344193 33344309 33344193 ID=cds.MS.gene97960.t1;Parent=MS.gene97960.t1
chr8.4 exon 33342930 33343164 33342930 ID=MS.gene97960.t1.exon3;Parent=MS.gene97960.t1
chr8.4 CDS 33342930 33343164 33342930 ID=cds.MS.gene97960.t1;Parent=MS.gene97960.t1
Gene Sequence

>MS.gene97960

ATGGACAATGATGATTGGGATCTCTTTTCTATTGTTCGTAGCTGCAAAGCTACCACCTTTGCTACTCCTAACACCAATTTTGAAACTCCACCTCCAACTCTAACCACCACAACCAATAACATCATATCCCCTCAAAACACCACACCTCCATGCTTTGATAATTTTAGTTTTACCGAAGAGAATAACTCAACCCCAATTACCCCACTTAAACCGAATGATTTCATAGAGCTTGACAAATTGATAATCAGTTTCAATCCAACAACCACTACCCCCACCCCTACTATCACCAGTATCCCAACCATCACTACCACCCCAACCACTACTCCTACCCCCTCAAGCACCATCATCCATTCCCACATTACCACCAATACCATCACTAACACTAGTTTTCATGATTCCAATCAAAATTCCACCTTTTCTAATTTCCCAACACTCATCGAACAACAACAGCTTCAACTAAATGAGTTTACTGAGCTAGAAAAAATGATACTTAAATTCTACCCCAACACCACTATCCCCACCTCTACCATCACTGCTCGCACCCCCACTACCACCATCTTCACTACCCCTACAACTACTATCCCTACAACCACATTCGCCACCCTCACCACCACCACCCCTATCATACCTACCATCACCACTACAATGACTAATACTAGTGTTTGTAACACAAATCAATATCTTACAATTTCTGATTATCAAATACTTATCGAACAACAACAGAATCAACCAAACCGTAACAATGAAGTGTATGTTTCTGAACCCCATGCCCGCATTGAAATCGCAACCAACAATTTTGATTGTGCATTCAACCATCCATCGATTCCACAACAACCCCTGAGAAAGCGCAATCAACTACCATTTCTACTACCTCGAACAAATTCTAGATTTTTACCAAATACACATCCGAAAAAACCAAAATTTAAATCAAGAAAAAGGTAAAGTATTTATTCCTATTATTTATTATATTTTAATTATATCAATTTTATTGTGACCTAAAATCATTATGCATTTCATTTTTTTACAGAAAAAATAATAACCAAGTGACATTTGTGTGTCATGTGAGGGAAGACGCGCCTTCAGAAGATTCATGGGCATGGAAAAAATATGGAGAAAAACCCATTAAAGGGTCTCCACATCCAAGGTTTTTATGCATTAAACGCTCTAAATTTACATATTTGTCTTCTATTTCATGTTAAAACTAATAATTTTGTTACCTAAACACACACCCACCTAGAGTTTTAAATAGTGATCGCAAAGACCATGATCCTTACCATTGGAAAGAATTTTGTTACCTAATACACACACCCAACTAGGGTTTTAAATTGTGATCGCAAGGACCATGATCCTTACCATTGGAAAGAATTGTAGTTAAATGCAACATATGTGGTCTTAATCGCGGTTGCATTTGCAATTCAATTTAAAAATATCAAAAGTTATTACTCCATTCTTTGCAATTAGCGACACATTTTCAAAATTAAATTTTGTGACAAAATGAATGTGACTATTAATTTTCAATGTACTATTAATTGCTTTTTGGTTTGATATGTTCTTAGTCCCTGCAAAAGTAACATTTTTTGCGTTTAGTGCCTCTGCTGTTTAGGAAAAACAATTACACCTTTGATCTTTGGTCTTTGATGTTTGTTTTAGTTTCTGCAAAATTTATTTATAGTGAAATTGGTCCCTTCAATATCCATTTTAATCCTTATTTTGATAGAATAAAATCAAATATTCTAGATATTAGAGAGATAAATTATAATATGAATAAAGTTTGCAGGAGTAAAACAAAACAATAAAGACCAAAAGAAAAAAGTGGAATATTTTTTAAAAAAAAAGGAAGAAAAAGGAAAGAGAGGATATATTTGTAGGGACTAAAAACAGATTTAAATCTCACTTTTTATTTTTTTTTCAATTGTAATATTTAATTGATTTTAAACACATCACTCCATAATCAATATCTTTCACTTTATTTAAATCTCACTTCATTTATATTTATTTTTTTAAAATATTTATAAATTAAACCAATATGTCACTCAGTGTAAGACGGATCCAGATTGCATACCTTTACGTAAAACTCTCTAATATATACATTTATGTGTATGGTTTTATCTATTAAAATAGTACGATTTAGCGGTGCTTGATATGAATAGATATCAATGAATGATTTTGTAGGAGCTACTACAAATGTAGAAGTTTCTGGGATTGTTCGGCAAAAAAACTAGTAGAGAAAAGCAATACCAGAGAGAACACTTATGTTGTGACATATAAAGGAGAACACAATCATGAAAAACCAGCAGTTAATCAGAACTCCGTTGTTGGAACCCCCCGAAACAAGTCATCAGAGACTAGATTATGCATTGGCAAAGAAGCTGGGATTATGCCAGAAACTTGGAATCGCCTAACATGA
Protein sequence

>MS.gene97960.t1

MDNDDWDLFSIVRSCKATTFATPNTNFETPPPTLTTTTNNIISPQNTTPPCFDNFSFTEENNSTPITPLKPNDFIELDKLIISFNPTTTTPTPTITSIPTITTTPTTTPTPSSTIIHSHITTNTITNTSFHDSNQNSTFSNFPTLIEQQQLQLNEFTELEKMILKFYPNTTIPTSTITARTPTTTIFTTPTTTIPTTTFATLTTTTPIIPTITTTMTNTSVCNTNQYLTISDYQILIEQQQNQPNRNNEVYVSEPHARIEIATNNFDCAFNHPSIPQQPLRKRNQLPFLLPRTNSRFLPNTHPKKPKFKSRKRKNNNQVTFVCHVREDAPSEDSWAWKKYGEKPIKGSPHPRSYYKCRSFWDCSAKKLVEKSNTRENTYVVTYKGEHNHEKPAVNQNSVVGTPRNKSSETRLCIGKEAGIMPETWNRLT