Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98020.t1 | XP_004488206.1 | 87.6 | 170 | 21 | 0 | 1 | 170 | 1 | 170 | 1.70E-28 | 136 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98020.t1 | P94077 | 66.8 | 184 | 47 | 3 | 1 | 170 | 6 | 189 | 2.7e-11 | 70.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98020.t1 | A0A1S2XEQ1 | 87.6 | 170 | 21 | 0 | 1 | 170 | 1 | 170 | 1.2e-28 | 136.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene98020.t1 | TF | C2C2-LSD |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98020.t1 | MTR_2g047838 | 83.815 | 173 | 25 | 1 | 1 | 170 | 1 | 173 | 1.30e-99 | 284 |
MS.gene98020.t1 | MTR_8g089310 | 71.023 | 176 | 45 | 1 | 1 | 170 | 14 | 189 | 1.42e-84 | 247 |
MS.gene98020.t1 | MTR_8g089310 | 71.023 | 176 | 45 | 1 | 1 | 170 | 1 | 176 | 2.11e-84 | 246 |
MS.gene98020.t1 | MTR_8g089310 | 71.023 | 176 | 45 | 1 | 1 | 170 | 48 | 223 | 3.00e-84 | 247 |
MS.gene98020.t1 | MTR_4g098500 | 57.273 | 110 | 47 | 0 | 2 | 111 | 5 | 114 | 8.39e-45 | 144 |
MS.gene98020.t1 | MTR_4g098500 | 57.273 | 110 | 47 | 0 | 2 | 111 | 31 | 140 | 4.49e-44 | 143 |
MS.gene98020.t1 | MTR_4g088850 | 42.045 | 88 | 51 | 0 | 41 | 128 | 40 | 127 | 1.64e-20 | 82.4 |
MS.gene98020.t1 | MTR_4g088850 | 40.000 | 75 | 44 | 1 | 4 | 78 | 42 | 115 | 3.72e-11 | 58.2 |
MS.gene98020.t1 | MTR_4g088850 | 45.333 | 75 | 41 | 0 | 41 | 115 | 40 | 114 | 1.68e-19 | 80.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98020.t1 | AT4G20380 | 60.326 | 184 | 59 | 3 | 1 | 170 | 6 | 189 | 1.74e-60 | 186 |
MS.gene98020.t1 | AT4G20380 | 60.326 | 184 | 59 | 3 | 1 | 170 | 6 | 189 | 1.74e-60 | 186 |
MS.gene98020.t1 | AT4G20380 | 60.326 | 184 | 59 | 3 | 1 | 170 | 1 | 184 | 2.51e-60 | 185 |
MS.gene98020.t1 | AT4G20380 | 60.326 | 184 | 59 | 3 | 1 | 170 | 1 | 184 | 2.51e-60 | 185 |
MS.gene98020.t1 | AT4G20380 | 60.326 | 184 | 59 | 3 | 1 | 170 | 1 | 184 | 2.51e-60 | 185 |
MS.gene98020.t1 | AT4G20380 | 60.326 | 184 | 59 | 3 | 1 | 170 | 1 | 184 | 2.51e-60 | 185 |
MS.gene98020.t1 | AT4G20380 | 60.326 | 184 | 59 | 3 | 1 | 170 | 1 | 184 | 2.51e-60 | 185 |
MS.gene98020.t1 | AT4G20380 | 52.857 | 210 | 59 | 3 | 1 | 170 | 1 | 210 | 4.20e-57 | 178 |
MS.gene98020.t1 | AT1G32540 | 56.364 | 110 | 48 | 0 | 2 | 111 | 65 | 174 | 1.98e-43 | 142 |
MS.gene98020.t1 | AT1G32540 | 56.364 | 110 | 48 | 0 | 2 | 111 | 32 | 141 | 7.32e-43 | 140 |
MS.gene98020.t1 | AT1G32540 | 56.364 | 110 | 48 | 0 | 2 | 111 | 32 | 141 | 7.32e-43 | 140 |
MS.gene98020.t1 | AT1G32540 | 56.481 | 108 | 47 | 0 | 2 | 109 | 32 | 139 | 3.14e-42 | 139 |
MS.gene98020.t1 | AT4G20380 | 59.016 | 122 | 39 | 2 | 1 | 111 | 1 | 122 | 1.30e-41 | 136 |
MS.gene98020.t1 | AT1G32540 | 62.857 | 70 | 26 | 0 | 2 | 71 | 65 | 134 | 9.12e-29 | 103 |
MS.gene98020.t1 | AT1G32540 | 54.545 | 66 | 29 | 1 | 42 | 106 | 66 | 131 | 1.82e-14 | 67.0 |
MS.gene98020.t1 | AT1G32540 | 62.857 | 70 | 26 | 0 | 2 | 71 | 32 | 101 | 1.79e-28 | 102 |
MS.gene98020.t1 | AT1G32540 | 52.941 | 68 | 31 | 1 | 42 | 108 | 33 | 100 | 2.59e-14 | 65.9 |
MS.gene98020.t1 | AT1G32540 | 62.857 | 70 | 26 | 0 | 2 | 71 | 32 | 101 | 1.79e-28 | 102 |
MS.gene98020.t1 | AT1G32540 | 52.941 | 68 | 31 | 1 | 42 | 108 | 33 | 100 | 2.59e-14 | 65.9 |
MS.gene98020.t1 | AT4G21610 | 40.625 | 96 | 57 | 0 | 40 | 135 | 57 | 152 | 3.21e-21 | 85.1 |
MS.gene98020.t1 | AT4G21610 | 37.662 | 77 | 47 | 1 | 2 | 78 | 58 | 133 | 2.43e-11 | 59.3 |
MS.gene98020.t1 | AT4G21610 | 47.222 | 72 | 38 | 0 | 40 | 111 | 57 | 128 | 5.62e-19 | 79.0 |
Find 41 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGTTGATTCAAGTGGGAAAT+TGG | 0.251370 | 2.3:-43260212 | MS.gene98020:intron |
GACAGTTCCCACAATGTATT+TGG | 0.260229 | 2.3:+43260697 | None:intergenic |
CACAATGTATTTGGTTCATT+TGG | 0.272286 | 2.3:+43260706 | None:intergenic |
TCAGAGCTGGTTGTTACATT+AGG | 0.293919 | 2.3:+43260417 | None:intergenic |
AACAGTTTGGTTCTCAAAGC+GGG | 0.433810 | 2.3:+43260255 | None:intergenic |
CGGAACCACATTATGTGTAC+TGG | 0.434315 | 2.3:-43261578 | MS.gene98020:CDS |
TGTAACAACCAGCTCTGAAA+TGG | 0.437855 | 2.3:-43260412 | MS.gene98020:intron |
CCACTTGAATCAACGGACAT+AGG | 0.456065 | 2.3:+43260220 | None:intergenic |
AACATACCGGGAGGAAGAAC+AGG | 0.457068 | 2.3:+43261485 | None:intergenic |
CAAACATTGCTTGCTCCTCT+AGG | 0.458137 | 2.3:+43261533 | None:intergenic |
AGGATTTATAGTGTTACAAC+AGG | 0.466530 | 2.3:+43260821 | None:intergenic |
CAGGTAAGCAATGTTGTTGT+GGG | 0.474114 | 2.3:-43259736 | MS.gene98020:CDS |
AGAAGATACCATTTCAGAGC+TGG | 0.501090 | 2.3:+43260404 | None:intergenic |
AAATGAACCAAATACATTGT+GGG | 0.507138 | 2.3:-43260704 | MS.gene98020:CDS |
CAATTTCCCACTTGAATCAA+CGG | 0.526156 | 2.3:+43260213 | None:intergenic |
CCATATAGATGACTAATGTA+AGG | 0.526995 | 2.3:-43260461 | MS.gene98020:intron |
GAATTGTCACAGCTTTATTG+TGG | 0.531778 | 2.3:-43260897 | MS.gene98020:CDS |
GGAGCAAGCAATGTTTGTTG+TGG | 0.536399 | 2.3:-43261527 | MS.gene98020:CDS |
AAACATTGCTTGCTCCTCTA+GGG | 0.538289 | 2.3:+43261534 | None:intergenic |
ACAACACTCATGTGTCCTCA+TGG | 0.541151 | 2.3:-43260672 | MS.gene98020:CDS |
ATATATATCATACCTGGTAC+AGG | 0.541173 | 2.3:+43260801 | None:intergenic |
ATTACACCTGTTCTTCCTCC+CGG | 0.553436 | 2.3:-43261491 | MS.gene98020:intron |
ACAGGTAAGCAATGTTGTTG+TGG | 0.554197 | 2.3:-43259737 | MS.gene98020:intron |
CAAATGAACCAAATACATTG+TGG | 0.557893 | 2.3:-43260705 | MS.gene98020:CDS |
AAATACATTGTGGGAACTGT+CGG | 0.559035 | 2.3:-43260695 | MS.gene98020:CDS |
TTGTCACAGCTTTATTGTGG+AGG | 0.564317 | 2.3:-43260894 | MS.gene98020:CDS |
GTTACATTAGGTCTCTGTGC+AGG | 0.568554 | 2.3:+43260429 | None:intergenic |
ACATTATGTGTACTGGGTGT+AGG | 0.584560 | 2.3:-43261571 | MS.gene98020:CDS |
AGGTACACTTACACAAACAT+TGG | 0.596374 | 2.3:+43260611 | None:intergenic |
AACATCTTGCTTTACCCTAG+AGG | 0.603716 | 2.3:-43261548 | MS.gene98020:CDS |
CAAATTGCACATTTGACTGA+GGG | 0.609045 | 2.3:+43260645 | None:intergenic |
CCTATGTCCGTTGATTCAAG+TGG | 0.615696 | 2.3:-43260220 | MS.gene98020:CDS |
CAACAGTTTGGTTCTCAAAG+CGG | 0.617036 | 2.3:+43260254 | None:intergenic |
AACACTATAAATCCTGTACC+AGG | 0.634087 | 2.3:-43260813 | MS.gene98020:intron |
CTATGTCCGTTGATTCAAGT+GGG | 0.636368 | 2.3:-43260219 | MS.gene98020:CDS |
TACACCCAGTACACATAATG+TGG | 0.638136 | 2.3:+43261573 | None:intergenic |
GGAACCACATTATGTGTACT+GGG | 0.650157 | 2.3:-43261577 | MS.gene98020:CDS |
ACAGTTTGGTTCTCAAAGCG+GGG | 0.653740 | 2.3:+43260256 | None:intergenic |
ACAAATTGCACATTTGACTG+AGG | 0.657368 | 2.3:+43260644 | None:intergenic |
TTGACTGAGGGAGCTCCATG+AGG | 0.705071 | 2.3:+43260657 | None:intergenic |
ACTTTGCTAATGTACACACG+TGG | 0.752607 | 2.3:-43260864 | MS.gene98020:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATATTTAATTTTAAGAATG+TGG | - | chr2.3:43261526-43261545 | MS.gene98020:CDS | 10.0% |
!!! | ATATTTAGTTATATTTTGAA+AGG | - | chr2.3:43260308-43260327 | MS.gene98020:intron | 10.0% |
!! | AAAATATAAGATATGGTAAC+TGG | + | chr2.3:43261457-43261476 | None:intergenic | 20.0% |
!! | ACAGTAGAAAATATAAGATA+TGG | + | chr2.3:43261464-43261483 | None:intergenic | 20.0% |
!! | AGATTAAGATAATTCCATTA+AGG | + | chr2.3:43260707-43260726 | None:intergenic | 20.0% |
!!! | AAATATGAAATGACTAGTTT+TGG | - | chr2.3:43261226-43261245 | MS.gene98020:intron | 20.0% |
!!! | AGAAGACATAATTCATTTTA+GGG | + | chr2.3:43261356-43261375 | None:intergenic | 20.0% |
! | AAAATCTGACATTAGTGATT+TGG | + | chr2.3:43261398-43261417 | None:intergenic | 25.0% |
! | AAATGAACCAAATACATTGT+GGG | - | chr2.3:43260591-43260610 | MS.gene98020:intron | 25.0% |
! | AACAACTTAGTAAACAAATC+TGG | + | chr2.3:43260540-43260559 | None:intergenic | 25.0% |
! | ATCAAATGATTGAACTCAAA+TGG | + | chr2.3:43261183-43261202 | None:intergenic | 25.0% |
! | ATGAATAATCACCAAAAGAA+AGG | + | chr2.3:43260944-43260963 | None:intergenic | 25.0% |
! | ATGATAACAAAAACAGCAAA+AGG | + | chr2.3:43259837-43259856 | None:intergenic | 25.0% |
! | GTAACTTACAACTTAATCTA+TGG | + | chr2.3:43260235-43260254 | None:intergenic | 25.0% |
! | TTAACAGTTATCAAGATTTC+AGG | - | chr2.3:43260157-43260176 | MS.gene98020:intron | 25.0% |
! | TTGTATCTAATGATCACTAA+TGG | - | chr2.3:43261278-43261297 | MS.gene98020:intron | 25.0% |
!! | GAGAAGACATAATTCATTTT+AGG | + | chr2.3:43261357-43261376 | None:intergenic | 25.0% |
!! | GTAAATTTCTGCATTTTATG+TGG | - | chr2.3:43260766-43260785 | MS.gene98020:intron | 25.0% |
AAGATATGGTAACTGGAAAA+TGG | + | chr2.3:43261450-43261469 | None:intergenic | 30.0% | |
AATTCCTACTATCTCTAACT+AGG | - | chr2.3:43261107-43261126 | MS.gene98020:intron | 30.0% | |
AGGATTTATAGTGTTACAAC+AGG | + | chr2.3:43260477-43260496 | None:intergenic | 30.0% | |
AGTAAATTTGATTGCACACA+CGG | - | chr2.3:43260209-43260228 | MS.gene98020:intron | 30.0% | |
ATATATATCATACCTGGTAC+AGG | + | chr2.3:43260497-43260516 | None:intergenic | 30.0% | |
ATTAGATGACTTAATGCATC+AGG | - | chr2.3:43260341-43260360 | MS.gene98020:intron | 30.0% | |
CAAATGAACCAAATACATTG+TGG | - | chr2.3:43260590-43260609 | MS.gene98020:intron | 30.0% | |
CCATATAGATGACTAATGTA+AGG | - | chr2.3:43260834-43260853 | MS.gene98020:CDS | 30.0% | |
CCTTACATTAGTCATCTATA+TGG | + | chr2.3:43260837-43260856 | None:intergenic | 30.0% | |
CTCATTACGATGAATTGTTT+GGG | + | chr2.3:43261150-43261169 | None:intergenic | 30.0% | |
CTCTAACTAGGAATCAAATT+CGG | - | chr2.3:43261119-43261138 | MS.gene98020:intron | 30.0% | |
GAAAAACCAGAAACTTGATA+AGG | - | chr2.3:43259887-43259906 | MS.gene98020:intron | 30.0% | |
GAATTATGTCTTCTCTCAAA+TGG | - | chr2.3:43261362-43261381 | MS.gene98020:intron | 30.0% | |
GTACATAGTAAAAGAAGCTT+GGG | - | chr2.3:43260079-43260098 | MS.gene98020:intron | 30.0% | |
GTGTGTATATATATCATACC+TGG | + | chr2.3:43260503-43260522 | None:intergenic | 30.0% | |
TACATAGTAAAAGAAGCTTG+GGG | - | chr2.3:43260080-43260099 | MS.gene98020:intron | 30.0% | |
TCTCATTACGATGAATTGTT+TGG | + | chr2.3:43261151-43261170 | None:intergenic | 30.0% | |
TTAGATGACTTAATGCATCA+GGG | - | chr2.3:43260342-43260361 | MS.gene98020:intron | 30.0% | |
TTTACTCTATATACGAAGCA+TGG | + | chr2.3:43260195-43260214 | None:intergenic | 30.0% | |
TTTCTTCCTTATCAAGTTTC+TGG | + | chr2.3:43259896-43259915 | None:intergenic | 30.0% | |
TTTGTGTAAGTGTACCTTAA+TGG | - | chr2.3:43260690-43260709 | MS.gene98020:CDS | 30.0% | |
! | CACAATGTATTTGGTTCATT+TGG | + | chr2.3:43260592-43260611 | None:intergenic | 30.0% |
! | CACTAATGTCAGATTTTAGA+GGG | - | chr2.3:43261401-43261420 | MS.gene98020:intron | 30.0% |
! | GATTTCTTTTACCTTTTCTG+TGG | - | chr2.3:43260802-43260821 | MS.gene98020:intron | 30.0% |
! | GATTTTCTACTACAACAGTT+TGG | + | chr2.3:43261056-43261075 | None:intergenic | 30.0% |
! | TCACTAATGTCAGATTTTAG+AGG | - | chr2.3:43261400-43261419 | MS.gene98020:intron | 30.0% |
!! | ATTTTAAGAATGTGGTGAAC+TGG | - | chr2.3:43261534-43261553 | MS.gene98020:CDS | 30.0% |
!! | GTTACTTGTTTTCGCATTAA+TGG | - | chr2.3:43260250-43260269 | MS.gene98020:CDS | 30.0% |
!! | TTTGACTTTTGCCTTTCTTT+TGG | - | chr2.3:43260930-43260949 | MS.gene98020:intron | 30.0% |
!!! | TGCATTTTATGTGGTTTTGT+TGG | - | chr2.3:43260775-43260794 | MS.gene98020:intron | 30.0% |
AAATACATTGTGGGAACTGT+CGG | - | chr2.3:43260600-43260619 | MS.gene98020:intron | 35.0% | |
AACACTATAAATCCTGTACC+AGG | - | chr2.3:43260482-43260501 | MS.gene98020:intron | 35.0% | |
AACAGCAAAAGGAAACATAC+CGG | + | chr2.3:43259826-43259845 | None:intergenic | 35.0% | |
ACAAATTGCACATTTGACTG+AGG | + | chr2.3:43260654-43260673 | None:intergenic | 35.0% | |
AGGTACACTTACACAAACAT+TGG | + | chr2.3:43260687-43260706 | None:intergenic | 35.0% | |
CAAATTGCACATTTGACTGA+GGG | + | chr2.3:43260653-43260672 | None:intergenic | 35.0% | |
CAATTTCCCACTTGAATCAA+CGG | + | chr2.3:43261085-43261104 | None:intergenic | 35.0% | |
CGCATTAATGGAATCTACTT+TGG | - | chr2.3:43260262-43260281 | MS.gene98020:CDS | 35.0% | |
CTTCTCTCAAATGGATGTTA+AGG | - | chr2.3:43261371-43261390 | MS.gene98020:intron | 35.0% | |
GATTCCTAGTTAGAGATAGT+AGG | + | chr2.3:43261114-43261133 | None:intergenic | 35.0% | |
GGTACATAGTAAAAGAAGCT+TGG | - | chr2.3:43260078-43260097 | MS.gene98020:intron | 35.0% | |
GTATGTCAAGTCATCTCTAA+TGG | - | chr2.3:43261300-43261319 | MS.gene98020:intron | 35.0% | |
TAGATGACTTAATGCATCAG+GGG | - | chr2.3:43260343-43260362 | MS.gene98020:intron | 35.0% | |
!! | GAATTGTCACAGCTTTATTG+TGG | - | chr2.3:43260398-43260417 | MS.gene98020:intron | 35.0% |
AAACATTGCTTGCTCCTCTA+GGG | + | chr2.3:43259764-43259783 | None:intergenic | 40.0% | |
AAATTTCCTAATGTGCCTGC+AGG | - | chr2.3:43260371-43260390 | MS.gene98020:intron | 40.0% | |
AACATCTTGCTTTACCCTAG+AGG | - | chr2.3:43259747-43259766 | MS.gene98020:intron | 40.0% | |
AAGCTATGCTACTCTATGTG+TGG | - | chr2.3:43260057-43260076 | MS.gene98020:intron | 40.0% | |
ACAGCAAAAGGAAACATACC+GGG | + | chr2.3:43259825-43259844 | None:intergenic | 40.0% | |
ACAGGTAAGCAATGTTGTTG+TGG | - | chr2.3:43261558-43261577 | MS.gene98020:CDS | 40.0% | |
ACATTATGTGTACTGGGTGT+AGG | - | chr2.3:43259724-43259743 | MS.gene98020:CDS | 40.0% | |
ACTTTGCTAATGTACACACG+TGG | - | chr2.3:43260431-43260450 | MS.gene98020:CDS | 40.0% | |
AGAAGATACCATTTCAGAGC+TGG | + | chr2.3:43260894-43260913 | None:intergenic | 40.0% | |
CAGGTAAGCAATGTTGTTGT+GGG | - | chr2.3:43261559-43261578 | MS.gene98020:CDS | 40.0% | |
CAGTTAGAATCTCTTCGAGT+TGG | + | chr2.3:43260006-43260025 | None:intergenic | 40.0% | |
GACAGTTCCCACAATGTATT+TGG | + | chr2.3:43260601-43260620 | None:intergenic | 40.0% | |
GCAGTTAAAGAATGTCGTGT+CGG | + | chr2.3:43261258-43261277 | None:intergenic | 40.0% | |
GGAACCACATTATGTGTACT+GGG | - | chr2.3:43259718-43259737 | MS.gene98020:CDS | 40.0% | |
TACACCCAGTACACATAATG+TGG | + | chr2.3:43259725-43259744 | None:intergenic | 40.0% | |
TCAGAGCTGGTTGTTACATT+AGG | + | chr2.3:43260881-43260900 | None:intergenic | 40.0% | |
! | CATCATCGTCATGATGATGA+TGG | - | chr2.3:43259863-43259882 | MS.gene98020:intron | 40.0% |
!! | AACAGTTTGGTTCTCAAAGC+GGG | + | chr2.3:43261043-43261062 | None:intergenic | 40.0% |
!! | CAACAGTTTGGTTCTCAAAG+CGG | + | chr2.3:43261044-43261063 | None:intergenic | 40.0% |
!! | CGTTGATTCAAGTGGGAAAT+TGG | - | chr2.3:43261083-43261102 | MS.gene98020:intron | 40.0% |
!! | CTATGTCCGTTGATTCAAGT+GGG | - | chr2.3:43261076-43261095 | MS.gene98020:intron | 40.0% |
!! | TGTAACAACCAGCTCTGAAA+TGG | - | chr2.3:43260883-43260902 | MS.gene98020:CDS | 40.0% |
!! | TTGTCACAGCTTTATTGTGG+AGG | - | chr2.3:43260401-43260420 | MS.gene98020:intron | 40.0% |
ACAACACTCATGTGTCCTCA+TGG | - | chr2.3:43260623-43260642 | MS.gene98020:CDS | 45.0% | |
ATTACACCTGTTCTTCCTCC+CGG | - | chr2.3:43259804-43259823 | MS.gene98020:intron | 45.0% | |
CAAACATTGCTTGCTCCTCT+AGG | + | chr2.3:43259765-43259784 | None:intergenic | 45.0% | |
CCACTTGAATCAACGGACAT+AGG | + | chr2.3:43261078-43261097 | None:intergenic | 45.0% | |
CGGAACCACATTATGTGTAC+TGG | - | chr2.3:43259717-43259736 | MS.gene98020:CDS | 45.0% | |
GGCAAGCATAACCACAGAAA+AGG | + | chr2.3:43260816-43260835 | None:intergenic | 45.0% | |
GTTACATTAGGTCTCTGTGC+AGG | + | chr2.3:43260869-43260888 | None:intergenic | 45.0% | |
TGTGACAATTCCATTCCTGC+AGG | + | chr2.3:43260389-43260408 | None:intergenic | 45.0% | |
! | GGAGCAAGCAATGTTTGTTG+TGG | - | chr2.3:43259768-43259787 | MS.gene98020:intron | 45.0% |
!! | ACAGTTTGGTTCTCAAAGCG+GGG | + | chr2.3:43261042-43261061 | None:intergenic | 45.0% |
!! | CCTATGTCCGTTGATTCAAG+TGG | - | chr2.3:43261075-43261094 | MS.gene98020:intron | 45.0% |
AACATACCGGGAGGAAGAAC+AGG | + | chr2.3:43259813-43259832 | None:intergenic | 50.0% | |
AGAATGTGGTGAACTGGCAC+AGG | - | chr2.3:43261540-43261559 | MS.gene98020:CDS | 50.0% | |
GCAAAAGGAAACATACCGGG+AGG | + | chr2.3:43259822-43259841 | None:intergenic | 50.0% | |
TCCATTCCTGCAGGCACATT+AGG | + | chr2.3:43260380-43260399 | None:intergenic | 50.0% | |
TCCTAATGTGCCTGCAGGAA+TGG | - | chr2.3:43260376-43260395 | MS.gene98020:intron | 50.0% | |
AAAGCGGGGTCTTGACTGCA+AGG | + | chr2.3:43261028-43261047 | None:intergenic | 55.0% | |
TTGACTGAGGGAGCTCCATG+AGG | + | chr2.3:43260641-43260660 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 43259714 | 43261603 | 43259714 | ID=MS.gene98020 |
chr2.3 | mRNA | 43259714 | 43261603 | 43259714 | ID=MS.gene98020.t1;Parent=MS.gene98020 |
chr2.3 | exon | 43261492 | 43261603 | 43261492 | ID=MS.gene98020.t1.exon1;Parent=MS.gene98020.t1 |
chr2.3 | CDS | 43261492 | 43261603 | 43261492 | ID=cds.MS.gene98020.t1;Parent=MS.gene98020.t1 |
chr2.3 | exon | 43260814 | 43260924 | 43260814 | ID=MS.gene98020.t1.exon2;Parent=MS.gene98020.t1 |
chr2.3 | CDS | 43260814 | 43260924 | 43260814 | ID=cds.MS.gene98020.t1;Parent=MS.gene98020.t1 |
chr2.3 | exon | 43260623 | 43260735 | 43260623 | ID=MS.gene98020.t1.exon3;Parent=MS.gene98020.t1 |
chr2.3 | CDS | 43260623 | 43260735 | 43260623 | ID=cds.MS.gene98020.t1;Parent=MS.gene98020.t1 |
chr2.3 | exon | 43260413 | 43260475 | 43260413 | ID=MS.gene98020.t1.exon4;Parent=MS.gene98020.t1 |
chr2.3 | CDS | 43260413 | 43260475 | 43260413 | ID=cds.MS.gene98020.t1;Parent=MS.gene98020.t1 |
chr2.3 | exon | 43260213 | 43260284 | 43260213 | ID=MS.gene98020.t1.exon5;Parent=MS.gene98020.t1 |
chr2.3 | CDS | 43260213 | 43260284 | 43260213 | ID=cds.MS.gene98020.t1;Parent=MS.gene98020.t1 |
chr2.3 | exon | 43259714 | 43259755 | 43259714 | ID=MS.gene98020.t1.exon6;Parent=MS.gene98020.t1 |
chr2.3 | CDS | 43259714 | 43259755 | 43259714 | ID=cds.MS.gene98020.t1;Parent=MS.gene98020.t1 |
Gene Sequence |
Protein sequence |