Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98086.t1 | KEH41605.1 | 47.5 | 305 | 132 | 4 | 1 | 280 | 4 | 305 | 4.60E-76 | 294.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98086.t1 | A0A072VU07 | 47.5 | 305 | 132 | 4 | 1 | 280 | 4 | 305 | 3.4e-76 | 294.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene98086.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98086.t1 | MTR_1g052720 | 47.869 | 305 | 131 | 5 | 1 | 280 | 4 | 305 | 1.16e-98 | 291 |
| MS.gene98086.t1 | MTR_6g465600 | 44.590 | 305 | 142 | 1 | 3 | 280 | 6 | 310 | 9.33e-96 | 284 |
| MS.gene98086.t1 | MTR_0246s0040 | 57.940 | 233 | 78 | 4 | 43 | 265 | 72 | 294 | 1.74e-83 | 253 |
| MS.gene98086.t1 | MTR_7g050355 | 36.029 | 272 | 124 | 4 | 1 | 272 | 4 | 225 | 4.34e-51 | 177 |
| MS.gene98086.t1 | MTR_0091s0080 | 33.186 | 226 | 133 | 6 | 54 | 277 | 256 | 465 | 7.20e-32 | 123 |
| MS.gene98086.t1 | MTR_0091s0090 | 36.723 | 177 | 98 | 4 | 84 | 246 | 3 | 179 | 4.10e-31 | 117 |
| MS.gene98086.t1 | MTR_1g105765 | 29.046 | 241 | 146 | 3 | 30 | 245 | 28 | 268 | 7.91e-29 | 111 |
| MS.gene98086.t1 | MTR_1g105780 | 28.631 | 241 | 147 | 3 | 30 | 245 | 28 | 268 | 1.61e-28 | 110 |
| MS.gene98086.t1 | MTR_3g048970 | 26.891 | 238 | 144 | 3 | 39 | 246 | 36 | 273 | 7.04e-26 | 103 |
| MS.gene98086.t1 | MTR_1g084880 | 26.891 | 238 | 144 | 3 | 39 | 246 | 36 | 273 | 7.56e-25 | 100 |
| MS.gene98086.t1 | MTR_4g082235 | 35.057 | 174 | 69 | 4 | 1 | 172 | 4 | 135 | 9.93e-25 | 99.4 |
| MS.gene98086.t1 | MTR_7g110090 | 27.313 | 227 | 140 | 3 | 40 | 241 | 37 | 263 | 2.71e-23 | 96.3 |
| MS.gene98086.t1 | MTR_4g032560 | 26.407 | 231 | 145 | 2 | 40 | 245 | 66 | 296 | 4.57e-23 | 96.3 |
| MS.gene98086.t1 | MTR_4g032580 | 26.407 | 231 | 145 | 2 | 40 | 245 | 66 | 296 | 5.27e-23 | 96.3 |
| MS.gene98086.t1 | MTR_2g100360 | 26.693 | 251 | 149 | 6 | 13 | 228 | 5 | 255 | 5.76e-21 | 90.1 |
| MS.gene98086.t1 | MTR_1g087870 | 25.106 | 235 | 138 | 3 | 57 | 257 | 2 | 232 | 1.02e-20 | 89.0 |
| MS.gene98086.t1 | MTR_2g038740 | 25.260 | 289 | 164 | 6 | 12 | 265 | 4 | 275 | 1.21e-20 | 92.0 |
| MS.gene98086.t1 | MTR_8g064960 | 50.704 | 71 | 35 | 0 | 171 | 241 | 29 | 99 | 1.66e-19 | 82.0 |
| MS.gene98086.t1 | MTR_4g062370 | 24.891 | 229 | 147 | 2 | 22 | 225 | 23 | 251 | 3.00e-19 | 87.8 |
| MS.gene98086.t1 | MTR_4g117740 | 29.167 | 144 | 84 | 2 | 57 | 193 | 65 | 197 | 5.41e-19 | 83.2 |
| MS.gene98086.t1 | MTR_1g047540 | 31.884 | 207 | 130 | 5 | 33 | 228 | 29 | 235 | 1.04e-18 | 85.9 |
| MS.gene98086.t1 | MTR_5g066660 | 23.944 | 213 | 160 | 1 | 39 | 251 | 36 | 246 | 1.82e-18 | 83.2 |
| MS.gene98086.t1 | MTR_3g070250 | 23.166 | 259 | 161 | 5 | 26 | 246 | 20 | 278 | 2.24e-18 | 83.2 |
| MS.gene98086.t1 | MTR_3g085990 | 24.900 | 249 | 154 | 5 | 11 | 246 | 4 | 232 | 1.58e-16 | 77.4 |
| MS.gene98086.t1 | MTR_1g023840 | 34.343 | 99 | 64 | 1 | 144 | 241 | 8 | 106 | 4.02e-14 | 68.6 |
| MS.gene98086.t1 | MTR_1g087510 | 50.877 | 57 | 28 | 0 | 224 | 280 | 116 | 172 | 7.66e-13 | 65.9 |
| MS.gene98086.t1 | MTR_3g452180 | 25.434 | 173 | 104 | 3 | 94 | 241 | 7 | 179 | 2.05e-12 | 64.7 |
| MS.gene98086.t1 | MTR_8g064930 | 48.000 | 50 | 26 | 0 | 49 | 98 | 3 | 52 | 3.04e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 67 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTTTACATGCGTAATTTC+TGG | 0.192595 | 5.4:-35200180 | MS.gene98086:CDS |
| TCCCGCGTTGCTGGTGCAAC+TGG | 0.195748 | 5.4:-35200018 | MS.gene98086:CDS |
| CTGCCTCTGTCCCGCGTTGC+TGG | 0.228277 | 5.4:-35200027 | MS.gene98086:CDS |
| GACAATGTTGGTGGTGGTCT+TGG | 0.284422 | 5.4:-35201121 | MS.gene98086:CDS |
| GAAGCACTGATGAGTTTAAA+AGG | 0.287062 | 5.4:-35201271 | MS.gene98086:intron |
| GGTTCGTTCAGACTTGATTA+AGG | 0.339991 | 5.4:-35201092 | MS.gene98086:CDS |
| ACAAAGTTGAGCAATACTTT+TGG | 0.346062 | 5.4:-35199987 | MS.gene98086:CDS |
| CGAGCATCATAATGATGATT+AGG | 0.359487 | 5.4:+35200469 | None:intergenic |
| ACAATGTTGGTGGTGGTCTT+GGG | 0.369416 | 5.4:-35201120 | MS.gene98086:CDS |
| ATGAACGACTTTGTCAAGTT+TGG | 0.369865 | 5.4:-35201313 | MS.gene98086:CDS |
| AAACTTGACAAAGTCGTTCA+TGG | 0.370649 | 5.4:+35201315 | None:intergenic |
| TTTGACTATGGTCGATTACT+TGG | 0.375912 | 5.4:-35200244 | MS.gene98086:CDS |
| ATAACATCCGTGCTTGCTCT+TGG | 0.387270 | 5.4:-35200636 | MS.gene98086:CDS |
| TGCAATATGAAGTTCGGTAA+TGG | 0.395226 | 5.4:-35200207 | MS.gene98086:CDS |
| TATTGCTCAACTTTGTAAAC+AGG | 0.397850 | 5.4:+35199994 | None:intergenic |
| GCAATATGAAGTTCGGTAAT+GGG | 0.400155 | 5.4:-35200206 | MS.gene98086:CDS |
| TGATGGTTGGTCTAAACTTA+AGG | 0.403307 | 5.4:-35200665 | MS.gene98086:CDS |
| TCGATTACTTGGGATATTCA+TGG | 0.412582 | 5.4:-35200233 | MS.gene98086:CDS |
| TAAGTTTAATGAAGGTGATA+TGG | 0.421624 | 5.4:-35200130 | MS.gene98086:CDS |
| GTCAAACATGTGGGTTCAGC+AGG | 0.433116 | 5.4:+35200261 | None:intergenic |
| GTTAAGATTGTGAAGAAGAA+TGG | 0.434062 | 5.4:-35200703 | MS.gene98086:CDS |
| ACTTTACATGCGTAATTTCT+GGG | 0.435509 | 5.4:-35200179 | MS.gene98086:CDS |
| TGGTGGTGGTCTTGGGAGGA+AGG | 0.441246 | 5.4:-35201113 | MS.gene98086:CDS |
| GTTCGGAGAACCGTCATTGA+AGG | 0.444282 | 5.4:+35200054 | None:intergenic |
| GGGACAGAGGCAGCATTGTT+CGG | 0.454675 | 5.4:+35200037 | None:intergenic |
| CTTACACGTAAGTTTAATGA+AGG | 0.456266 | 5.4:-35200138 | MS.gene98086:CDS |
| CCCGCGTTGCTGGTGCAACT+GGG | 0.456667 | 5.4:-35200017 | MS.gene98086:CDS |
| TAAACTCATCAGTGCTTCAA+TGG | 0.462147 | 5.4:+35201276 | None:intergenic |
| GAAGGTGATATGGTGAAGTT+TGG | 0.466272 | 5.4:-35200120 | MS.gene98086:CDS |
| TGGAAATGCAATATGAAGTT+CGG | 0.470790 | 5.4:-35200213 | MS.gene98086:CDS |
| ACGACTTTGTCAAGTTTGGC+AGG | 0.473314 | 5.4:-35201309 | MS.gene98086:CDS |
| CATTCTCTCGCCTTCAATGA+CGG | 0.482473 | 5.4:-35200064 | MS.gene98086:CDS |
| TGAACCCACATGTTTGACTA+TGG | 0.482592 | 5.4:-35200256 | MS.gene98086:CDS |
| CATGCGTAATTTCTGGGCAG+TGG | 0.494343 | 5.4:-35200173 | MS.gene98086:CDS |
| GGAAGAGTTTACTTTGATGA+TGG | 0.512351 | 5.4:-35200682 | MS.gene98086:CDS |
| GGATGTTACCTCTGGTTCGC+TGG | 0.524336 | 5.4:-35200395 | MS.gene98086:intron |
| GACCACCACCAACATTGTCC+TGG | 0.525161 | 5.4:+35201125 | None:intergenic |
| GAGTTTACTTTGATGATGGT+TGG | 0.532278 | 5.4:-35200678 | MS.gene98086:CDS |
| ACAAAGTCGGATGTTACCTC+TGG | 0.536950 | 5.4:-35200403 | MS.gene98086:CDS |
| TTCAAGGGAATATGGAATGG+AGG | 0.538870 | 5.4:-35200773 | MS.gene98086:CDS |
| TAATAGGAGATGATGTGGCT+TGG | 0.546794 | 5.4:-35200303 | MS.gene98086:intron |
| TTAATTAATAGGAGATGATG+TGG | 0.548119 | 5.4:-35200308 | MS.gene98086:intron |
| TTGACTATGGTCGATTACTT+GGG | 0.562457 | 5.4:-35200243 | MS.gene98086:CDS |
| GTCCAGGACAATGTTGGTGG+TGG | 0.563131 | 5.4:-35201127 | MS.gene98086:CDS |
| TACCGTATGGAGTACGATGT+TGG | 0.567707 | 5.4:-35201061 | MS.gene98086:CDS |
| CGACTTTGTCAAGTTTGGCA+GGG | 0.572163 | 5.4:-35201308 | MS.gene98086:CDS |
| CCCAGTTGCACCAGCAACGC+GGG | 0.576651 | 5.4:+35200017 | None:intergenic |
| ATCCAACATCGTACTCCATA+CGG | 0.582851 | 5.4:+35201059 | None:intergenic |
| CTTTGTCAGTTCCTTCACAT+AGG | 0.590852 | 5.4:+35200420 | None:intergenic |
| TTGTGATCCAAGAGCAAGCA+CGG | 0.593099 | 5.4:+35200629 | None:intergenic |
| TAAGGTGAGGACATACCGTA+TGG | 0.596024 | 5.4:-35201074 | MS.gene98086:CDS |
| TCAGTTCCTTCACATAGGTG+TGG | 0.598235 | 5.4:+35200425 | None:intergenic |
| GGTGAAGTTTGGTATGACTA+AGG | 0.598351 | 5.4:-35200109 | MS.gene98086:CDS |
| TCCATGTGAAAATGAAATTG+AGG | 0.599971 | 5.4:-35200725 | MS.gene98086:CDS |
| GCAGTCCAGGACAATGTTGG+TGG | 0.600282 | 5.4:-35201130 | MS.gene98086:intron |
| GCACCAGCAACGCGGGACAG+AGG | 0.602454 | 5.4:+35200024 | None:intergenic |
| CAAGCAGTCCAGGACAATGT+TGG | 0.603347 | 5.4:-35201133 | MS.gene98086:intron |
| TAGGTGTGGTAAAACTTCGT+TGG | 0.614453 | 5.4:+35200439 | None:intergenic |
| ATGTTGGTGGTGGTCTTGGG+AGG | 0.618537 | 5.4:-35201117 | MS.gene98086:CDS |
| ATCGACCATAGTCAAACATG+TGG | 0.624542 | 5.4:+35200251 | None:intergenic |
| TATGAAGTTCGGTAATGGGA+AGG | 0.632797 | 5.4:-35200202 | MS.gene98086:CDS |
| GGATCACGTAGGAAAACGAA+TGG | 0.635860 | 5.4:+35200745 | None:intergenic |
| GTTCAGACTTGATTAAGGTG+AGG | 0.639441 | 5.4:-35201087 | MS.gene98086:CDS |
| ATATCTCACCAGCGAACCAG+AGG | 0.646756 | 5.4:+35200387 | None:intergenic |
| TGTGAAGGAACTGACAAAGT+CGG | 0.648494 | 5.4:-35200416 | MS.gene98086:CDS |
| GCCCAGTTGCACCAGCAACG+CGG | 0.664323 | 5.4:+35200016 | None:intergenic |
| TCGACCATAGTCAAACATGT+GGG | 0.691956 | 5.4:+35200252 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GACAAACTAAATTAAAAAAA+AGG | + | chr5.4:35200052-35200071 | None:intergenic | 15.0% |
| !!! | ACTGTTGTTTATTAATTAAT+AGG | - | chr5.4:35200972-35200991 | MS.gene98086:intron | 15.0% |
| !! | TGAATAAATGAGAAAATGAA+AGG | + | chr5.4:35200140-35200159 | None:intergenic | 20.0% |
| ! | ACGCATATGAAAGTAATATT+TGG | + | chr5.4:35200074-35200093 | None:intergenic | 25.0% |
| ! | TAAGTTTAATGAAGGTGATA+TGG | - | chr5.4:35201161-35201180 | MS.gene98086:intron | 25.0% |
| ! | TTAACTCACTGATATTCATT+TGG | - | chr5.4:35200457-35200476 | MS.gene98086:CDS | 25.0% |
| ! | TTAATTAATAGGAGATGATG+TGG | - | chr5.4:35200983-35201002 | MS.gene98086:intron | 25.0% |
| !! | TTCTGTCAGTTCTAATTAAA+AGG | + | chr5.4:35200354-35200373 | None:intergenic | 25.0% |
| !!! | TCTATTTCTGTAATTCTATG+TGG | - | chr5.4:35200272-35200291 | MS.gene98086:CDS | 25.0% |
| ACAGATTATGTGCTTCAAAA+TGG | - | chr5.4:35200386-35200405 | MS.gene98086:intron | 30.0% | |
| ACTTTACATGCGTAATTTCT+GGG | - | chr5.4:35201112-35201131 | MS.gene98086:CDS | 30.0% | |
| CTTACACGTAAGTTTAATGA+AGG | - | chr5.4:35201153-35201172 | MS.gene98086:intron | 30.0% | |
| GTTAAGATTGTGAAGAAGAA+TGG | - | chr5.4:35200588-35200607 | MS.gene98086:CDS | 30.0% | |
| TATTGCTCAACTTTGTAAAC+AGG | + | chr5.4:35201300-35201319 | None:intergenic | 30.0% | |
| TCCATGTGAAAATGAAATTG+AGG | - | chr5.4:35200566-35200585 | MS.gene98086:intron | 30.0% | |
| TGGAAATGCAATATGAAGTT+CGG | - | chr5.4:35201078-35201097 | MS.gene98086:CDS | 30.0% | |
| ! | ACAAAGTTGAGCAATACTTT+TGG | - | chr5.4:35201304-35201323 | MS.gene98086:CDS | 30.0% |
| ! | ACCTCAATTTCATTTTCACA+TGG | + | chr5.4:35200570-35200589 | None:intergenic | 30.0% |
| !!! | TTTTTCAAGGGAATATGGAA+TGG | - | chr5.4:35200515-35200534 | MS.gene98086:intron | 30.0% |
| ATGAACGACTTTGTCAAGTT+TGG | - | chr5.4:35199978-35199997 | MS.gene98086:CDS | 35.0% | |
| ATGAGGAGTTTCTTTATCCT+AGG | - | chr5.4:35200736-35200755 | MS.gene98086:CDS | 35.0% | |
| CGAGCATCATAATGATGATT+AGG | + | chr5.4:35200825-35200844 | None:intergenic | 35.0% | |
| CGTCTCAAAACAATTCACTT+CGG | + | chr5.4:35200771-35200790 | None:intergenic | 35.0% | |
| GACTTTACATGCGTAATTTC+TGG | - | chr5.4:35201111-35201130 | MS.gene98086:CDS | 35.0% | |
| GCAATATGAAGTTCGGTAAT+GGG | - | chr5.4:35201085-35201104 | MS.gene98086:CDS | 35.0% | |
| GGAAGAGTTTACTTTGATGA+TGG | - | chr5.4:35200609-35200628 | MS.gene98086:CDS | 35.0% | |
| TAAACTCATCAGTGCTTCAA+TGG | + | chr5.4:35200018-35200037 | None:intergenic | 35.0% | |
| TATTCCCTTGAAAAACATGC+TGG | + | chr5.4:35200510-35200529 | None:intergenic | 35.0% | |
| TCATGGCATGTAAGATAGTT+TGG | - | chr5.4:35200311-35200330 | MS.gene98086:intron | 35.0% | |
| TCGATTACTTGGGATATTCA+TGG | - | chr5.4:35201058-35201077 | MS.gene98086:CDS | 35.0% | |
| TGCAATATGAAGTTCGGTAA+TGG | - | chr5.4:35201084-35201103 | MS.gene98086:CDS | 35.0% | |
| TTGACTATGGTCGATTACTT+GGG | - | chr5.4:35201048-35201067 | MS.gene98086:intron | 35.0% | |
| TTGGATTGTATTAAAGCGCA+AGG | - | chr5.4:35200476-35200495 | MS.gene98086:CDS | 35.0% | |
| TTTGACTATGGTCGATTACT+TGG | - | chr5.4:35201047-35201066 | MS.gene98086:intron | 35.0% | |
| ! | TTTTTCGTGGAGAAACTATG+AGG | - | chr5.4:35200712-35200731 | MS.gene98086:CDS | 35.0% |
| !! | GAAGCACTGATGAGTTTAAA+AGG | - | chr5.4:35200020-35200039 | MS.gene98086:CDS | 35.0% |
| !! | GAGTTTACTTTGATGATGGT+TGG | - | chr5.4:35200613-35200632 | MS.gene98086:CDS | 35.0% |
| !! | GCTGTAGCATTTGTTTTTCA+TGG | - | chr5.4:35200294-35200313 | MS.gene98086:CDS | 35.0% |
| !! | TGATGGTTGGTCTAAACTTA+AGG | - | chr5.4:35200626-35200645 | MS.gene98086:CDS | 35.0% |
| !!! | GCATGTTTTTCAAGGGAATA+TGG | - | chr5.4:35200510-35200529 | MS.gene98086:intron | 35.0% |
| ATCCAACATCGTACTCCATA+CGG | + | chr5.4:35200235-35200254 | None:intergenic | 40.0% | |
| ATCGACCATAGTCAAACATG+TGG | + | chr5.4:35201043-35201062 | None:intergenic | 40.0% | |
| CTCAAAACAATTCACTTCGG+AGG | + | chr5.4:35200768-35200787 | None:intergenic | 40.0% | |
| CTCATTTATTCAAGCAGTCC+AGG | - | chr5.4:35200148-35200167 | MS.gene98086:CDS | 40.0% | |
| CTTTGTCAGTTCCTTCACAT+AGG | + | chr5.4:35200874-35200893 | None:intergenic | 40.0% | |
| GAAGGTGATATGGTGAAGTT+TGG | - | chr5.4:35201171-35201190 | MS.gene98086:intron | 40.0% | |
| GGTGAAGTTTGGTATGACTA+AGG | - | chr5.4:35201182-35201201 | MS.gene98086:intron | 40.0% | |
| GGTTCGTTCAGACTTGATTA+AGG | - | chr5.4:35200199-35200218 | MS.gene98086:CDS | 40.0% | |
| GTTCAGACTTGATTAAGGTG+AGG | - | chr5.4:35200204-35200223 | MS.gene98086:CDS | 40.0% | |
| TAATAGGAGATGATGTGGCT+TGG | - | chr5.4:35200988-35201007 | MS.gene98086:intron | 40.0% | |
| TAGGTGTGGTAAAACTTCGT+TGG | + | chr5.4:35200855-35200874 | None:intergenic | 40.0% | |
| TCGACCATAGTCAAACATGT+GGG | + | chr5.4:35201042-35201061 | None:intergenic | 40.0% | |
| TGAACCCACATGTTTGACTA+TGG | - | chr5.4:35201035-35201054 | MS.gene98086:intron | 40.0% | |
| TGGAGAAACTATGAGGTATG+AGG | - | chr5.4:35200719-35200738 | MS.gene98086:CDS | 40.0% | |
| TGTGAAGGAACTGACAAAGT+CGG | - | chr5.4:35200875-35200894 | MS.gene98086:intron | 40.0% | |
| TTCAAGGGAATATGGAATGG+AGG | - | chr5.4:35200518-35200537 | MS.gene98086:intron | 40.0% | |
| ! | AGCTACCAGCATGTTTTTCA+AGG | - | chr5.4:35200502-35200521 | MS.gene98086:intron | 40.0% |
| ! | CATTTTCACATGGATCACGT+AGG | + | chr5.4:35200560-35200579 | None:intergenic | 40.0% |
| ! | GTTTTACCACACCTATGTGA+AGG | - | chr5.4:35200860-35200879 | MS.gene98086:intron | 40.0% |
| !! | CGCAACTTGTTTCTTTTTCG+TGG | - | chr5.4:35200699-35200718 | MS.gene98086:CDS | 40.0% |
| !! | GCTACCAGCATGTTTTTCAA+GGG | - | chr5.4:35200503-35200522 | MS.gene98086:intron | 40.0% |
| !! | TATGAAGTTCGGTAATGGGA+AGG | - | chr5.4:35201089-35201108 | MS.gene98086:CDS | 40.0% |
| ACAAAGTCGGATGTTACCTC+TGG | - | chr5.4:35200888-35200907 | MS.gene98086:intron | 45.0% | |
| ACGACTTTGTCAAGTTTGGC+AGG | - | chr5.4:35199982-35200001 | MS.gene98086:CDS | 45.0% | |
| ATAACATCCGTGCTTGCTCT+TGG | - | chr5.4:35200655-35200674 | MS.gene98086:CDS | 45.0% | |
| CATTCTCTCGCCTTCAATGA+CGG | - | chr5.4:35201227-35201246 | MS.gene98086:intron | 45.0% | |
| CGACTTTGTCAAGTTTGGCA+GGG | - | chr5.4:35199983-35200002 | MS.gene98086:CDS | 45.0% | |
| GGATCACGTAGGAAAACGAA+TGG | + | chr5.4:35200549-35200568 | None:intergenic | 45.0% | |
| TAAGGTGAGGACATACCGTA+TGG | - | chr5.4:35200217-35200236 | MS.gene98086:CDS | 45.0% | |
| TACCGTATGGAGTACGATGT+TGG | - | chr5.4:35200230-35200249 | MS.gene98086:CDS | 45.0% | |
| TCAGTTCCTTCACATAGGTG+TGG | + | chr5.4:35200869-35200888 | None:intergenic | 45.0% | |
| TTGTGATCCAAGAGCAAGCA+CGG | + | chr5.4:35200665-35200684 | None:intergenic | 45.0% | |
| ! | TTGCTATTCACTGCAACGCT+TGG | + | chr5.4:35200798-35200817 | None:intergenic | 45.0% |
| !! | ACAATGTTGGTGGTGGTCTT+GGG | - | chr5.4:35200171-35200190 | MS.gene98086:CDS | 45.0% |
| ATATCTCACCAGCGAACCAG+AGG | + | chr5.4:35200907-35200926 | None:intergenic | 50.0% | |
| CAAGCAGTCCAGGACAATGT+TGG | - | chr5.4:35200158-35200177 | MS.gene98086:CDS | 50.0% | |
| GTCAAACATGTGGGTTCAGC+AGG | + | chr5.4:35201033-35201052 | None:intergenic | 50.0% | |
| GTTCGGAGAACCGTCATTGA+AGG | + | chr5.4:35201240-35201259 | None:intergenic | 50.0% | |
| ! | CATGCGTAATTTCTGGGCAG+TGG | - | chr5.4:35201118-35201137 | MS.gene98086:CDS | 50.0% |
| !! | GACAATGTTGGTGGTGGTCT+TGG | - | chr5.4:35200170-35200189 | MS.gene98086:CDS | 50.0% |
| CACTTCGGAGGACTGAACCT+AGG | + | chr5.4:35200756-35200775 | None:intergenic | 55.0% | |
| GACCACCACCAACATTGTCC+TGG | + | chr5.4:35200169-35200188 | None:intergenic | 55.0% | |
| GCAGTCCAGGACAATGTTGG+TGG | - | chr5.4:35200161-35200180 | MS.gene98086:CDS | 55.0% | |
| GGGACAGAGGCAGCATTGTT+CGG | + | chr5.4:35201257-35201276 | None:intergenic | 55.0% | |
| ! | GGATGTTACCTCTGGTTCGC+TGG | - | chr5.4:35200896-35200915 | MS.gene98086:intron | 55.0% |
| ! | GTCCAGGACAATGTTGGTGG+TGG | - | chr5.4:35200164-35200183 | MS.gene98086:CDS | 55.0% |
| !! | ATGTTGGTGGTGGTCTTGGG+AGG | - | chr5.4:35200174-35200193 | MS.gene98086:CDS | 55.0% |
| !! | TGGTGGTGGTCTTGGGAGGA+AGG | - | chr5.4:35200178-35200197 | MS.gene98086:CDS | 60.0% |
| CCCAGTTGCACCAGCAACGC+GGG | + | chr5.4:35201277-35201296 | None:intergenic | 65.0% | |
| CCCGCGTTGCTGGTGCAACT+GGG | - | chr5.4:35201274-35201293 | MS.gene98086:CDS | 65.0% | |
| GCCCAGTTGCACCAGCAACG+CGG | + | chr5.4:35201278-35201297 | None:intergenic | 65.0% | |
| TCCCGCGTTGCTGGTGCAAC+TGG | - | chr5.4:35201273-35201292 | MS.gene98086:CDS | 65.0% | |
| CTGCCTCTGTCCCGCGTTGC+TGG | - | chr5.4:35201264-35201283 | MS.gene98086:intron | 70.0% | |
| GCACCAGCAACGCGGGACAG+AGG | + | chr5.4:35201270-35201289 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 35199978 | 35201335 | 35199978 | ID=MS.gene98086 |
| chr5.4 | mRNA | 35199978 | 35201335 | 35199978 | ID=MS.gene98086.t1;Parent=MS.gene98086 |
| chr5.4 | exon | 35201272 | 35201335 | 35201272 | ID=MS.gene98086.t1.exon1;Parent=MS.gene98086.t1 |
| chr5.4 | CDS | 35201272 | 35201335 | 35201272 | ID=cds.MS.gene98086.t1;Parent=MS.gene98086.t1 |
| chr5.4 | exon | 35201057 | 35201148 | 35201057 | ID=MS.gene98086.t1.exon2;Parent=MS.gene98086.t1 |
| chr5.4 | CDS | 35201057 | 35201148 | 35201057 | ID=cds.MS.gene98086.t1;Parent=MS.gene98086.t1 |
| chr5.4 | exon | 35200580 | 35200821 | 35200580 | ID=MS.gene98086.t1.exon3;Parent=MS.gene98086.t1 |
| chr5.4 | CDS | 35200580 | 35200821 | 35200580 | ID=cds.MS.gene98086.t1;Parent=MS.gene98086.t1 |
| chr5.4 | exon | 35200396 | 35200498 | 35200396 | ID=MS.gene98086.t1.exon4;Parent=MS.gene98086.t1 |
| chr5.4 | CDS | 35200396 | 35200498 | 35200396 | ID=cds.MS.gene98086.t1;Parent=MS.gene98086.t1 |
| chr5.4 | exon | 35199978 | 35200319 | 35199978 | ID=MS.gene98086.t1.exon5;Parent=MS.gene98086.t1 |
| chr5.4 | CDS | 35199978 | 35200319 | 35199978 | ID=cds.MS.gene98086.t1;Parent=MS.gene98086.t1 |
| Gene Sequence |
| Protein sequence |
