AlfalfaGEDB | MS.gene98099

M. sativa cultivar XinJiangDaYe / MS.gene98099

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98099.t1	XP_013447966.1	88.6	220	25	0	1	220	1	220	9.90E-98	366.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98099.t1	Q39261	42.1	76	37	2	83	151	52	127	4.0e-07	56.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98099.t1	A0A072TYR6	88.6	220	25	0	1	220	1	220	7.1e-98	366.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene98099.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98099.t1	MTR_7g028890	88.636	220	25	0	1	220	1	220	4.66e-142	395
MS.gene98099.t1	MTR_7g022250	74.059	239	43	2	1	220	1	239	2.51e-124	352
MS.gene98099.t1	MTR_7g028915	71.368	234	31	2	1	220	1	212	1.33e-111	318
MS.gene98099.t1	MTR_7g022270	58.791	182	53	4	20	200	1	161	4.84e-69	209
MS.gene98099.t1	MTR_4g128340	30.714	140	78	4	83	220	47	169	1.12e-11	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Find 38 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATATGATTCAACATGC+AGG	0.449556	7.2:+71062812	MS.gene98099:CDS
AAGAAATGGAGAAATTTCTT+TGG	0.293893	7.2:-71062579	None:intergenic
ACAATATGATTCAACATGCA+GGG	0.581032	7.2:+71062813	MS.gene98099:CDS
ACCATCACTCCATTTCATAT+GGG	0.489513	7.2:+71062764	MS.gene98099:CDS
ACTAGTCCACAGGCATTAGG+TGG	0.661075	7.2:+71062677	MS.gene98099:CDS
ACTATGTCAAAGATTGAAGT+TGG	0.488225	7.2:+71062938	MS.gene98099:CDS
ACTCCATTTCATATGGGGTG+TGG	0.533278	7.2:+71062770	MS.gene98099:CDS
AGAATTCTGAGTTTCAACAT+GGG	0.673130	7.2:-71062510	None:intergenic
AGACAAAGAGACTCAAGAGG+AGG	0.673262	7.2:+71063006	MS.gene98099:CDS
AGTAGACAATTTGAAGATGA+TGG	0.466141	7.2:+71062439	MS.gene98099:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATATGATTCAACATGC+AGG	+	chr7.2:71062812-71062831	MS.gene98099:CDS	30.0%
ACAATATGATTCAACATGCA+GGG	+	chr7.2:71062813-71062832	MS.gene98099:CDS	30.0%
ACTATGTCAAAGATTGAAGT+TGG	+	chr7.2:71062938-71062957	MS.gene98099:CDS	30.0%
AGAATTCTGAGTTTCAACAT+GGG	-	chr7.2:71062513-71062532	None:intergenic	30.0%
AGTAGACAATTTGAAGATGA+TGG	+	chr7.2:71062439-71062458	MS.gene98099:CDS	30.0%
AGTCTCAATAAAAAGATCCA+AGG	+	chr7.2:71062728-71062747	MS.gene98099:CDS	30.0%
CTTAAGGGTCAAATCAATAT+TGG	-	chr7.2:71063038-71063057	None:intergenic	30.0%
GTCTCAATAAAAAGATCCAA+GGG	+	chr7.2:71062729-71062748	MS.gene98099:CDS	30.0%
TAGAATTCTGAGTTTCAACA+TGG	-	chr7.2:71062514-71062533	None:intergenic	30.0%
ACCATCACTCCATTTCATAT+GGG	+	chr7.2:71062764-71062783	MS.gene98099:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	71062401	71063063	71062401	ID=MS.gene98099
chr7.2	mRNA	71062401	71063063	71062401	ID=MS.gene98099.t1;Parent=MS.gene98099
chr7.2	exon	71062401	71063063	71062401	ID=MS.gene98099.t1.exon1;Parent=MS.gene98099.t1
chr7.2	CDS	71062401	71063063	71062401	ID=cds.MS.gene98099.t1;Parent=MS.gene98099.t1

Gene Sequence

>MS.gene98099

ATGTGCAACAAGAGGAAGGAGAAGGTGAATGAAGAATCAGTAGACAATTTGAAGATGATGGAGAATCAGAACAATGAGAACAAGCGAAAGGCAATTGTGCTGGAAGAGTCCCATGTTGAAACTCAGAATTCTAAGACTCACCAAAAAGATGTTGCTGAAGAAGAATCAACTGATTCATCCAAAGAAATTTCTCCATTTCTTCTTTTTGGATTCATTGTTGATCACAGGAAAGCAATTAAAAATGCTTACTCATGCAAATTTTGTAGCAGAAAGTTCACTAGTCCACAGGCATTAGGTGGTCATCAAAGTTCTCACAAATTAGAGAGAAGTCTCAATAAAAAGATCCAAGGGATAAGTCTAAACACCATCACTCCATTTCATATGGGGTGTGGATATCAATATAATGGATTTAACAATATGATTCAACATGCAGGGTCATCAAACTTTTATGCAGGAAATTTGTATGGTGCATTGCAACATATTCCGGAGATAGATGAAACGAATGAGGCTGATCAAAGCATTATGAGTCAAAAAGTTACTATGTCAAAGATTGAAGTTGGTAAAGTTTCAGAGGGAGGTGCTGTTAGTGATGAAGTTGATCAGGAAGACAAAGAGACTCAAGAGGAGGAAGCATCCAATATTGATTTGACCCTTAAGCTTTGA

Protein sequence

>MS.gene98099.t1

MCNKRKEKVNEESVDNLKMMENQNNENKRKAIVLEESHVETQNSKTHQKDVAEEESTDSSKEISPFLLFGFIVDHRKAIKNAYSCKFCSRKFTSPQALGGHQSSHKLERSLNKKIQGISLNTITPFHMGCGYQYNGFNNMIQHAGSSNFYAGNLYGALQHIPEIDETNEADQSIMSQKVTMSKIEVGKVSEGGAVSDEVDQEDKETQEEEASNIDLTLKL