AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98248

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98248.t1 MTR_0020s0020 94.135 341 20 0 1 341 1 341 0.0 575
MS.gene98248.t1 MTR_1g100777 54.203 345 110 10 1 340 1 302 3.33e-104 308
MS.gene98248.t1 MTR_5g010680 46.584 322 107 7 7 286 5 303 2.49e-80 249
MS.gene98248.t1 MTR_3g101870 45.662 219 101 3 23 227 14 228 1.74e-59 196
MS.gene98248.t1 MTR_5g089170 38.519 270 125 7 23 286 15 249 3.43e-53 176
MS.gene98248.t1 MTR_5g017470 44.091 220 81 4 26 230 2 194 9.92e-51 171
MS.gene98248.t1 MTR_7g091370 43.000 200 78 2 27 226 16 179 1.37e-44 153
MS.gene98248.t1 MTR_5g029680 61.111 108 42 0 17 124 16 123 2.19e-41 151
MS.gene98248.t1 MTR_7g095680 51.220 123 59 1 3 124 18 140 4.41e-40 144
MS.gene98248.t1 MTR_6g043060 49.606 127 64 0 32 158 21 147 1.41e-39 142
MS.gene98248.t1 MTR_1g071360 54.955 111 50 0 31 141 30 140 8.17e-39 141
MS.gene98248.t1 MTR_1g071360 54.955 111 50 0 31 141 27 137 1.12e-38 141
MS.gene98248.t1 MTR_4g077970 65.217 92 32 0 33 124 12 103 4.05e-38 142
MS.gene98248.t1 MTR_1g102860 61.702 94 36 0 31 124 38 131 7.52e-37 135
MS.gene98248.t1 MTR_8g083100 49.612 129 65 0 34 162 23 151 1.34e-36 138
MS.gene98248.t1 MTR_1g061170 52.101 119 51 1 33 145 49 167 1.87e-36 137
MS.gene98248.t1 MTR_8g087540 59.596 99 39 1 26 124 6 103 2.04e-36 135
MS.gene98248.t1 MTR_4g088900 36.585 205 92 5 31 231 31 201 7.40e-36 129
MS.gene98248.t1 MTR_2g100680 53.913 115 53 0 31 145 29 143 1.19e-35 134
MS.gene98248.t1 MTR_3g104550 58.511 94 39 0 31 124 44 137 1.20e-34 130
MS.gene98248.t1 MTR_6g086805 57.143 98 42 0 27 124 5 102 6.48e-34 128
MS.gene98248.t1 MTR_2g017890 48.739 119 61 0 33 151 15 133 4.18e-33 126
MS.gene98248.t1 MTR_2g100670 52.830 106 49 1 31 135 31 136 1.15e-32 124
MS.gene98248.t1 MTR_2g100670 55.319 94 42 0 31 124 139 232 1.02e-31 123
MS.gene98248.t1 MTR_8g105780 59.574 94 37 1 32 124 21 114 3.26e-31 121
MS.gene98248.t1 MTR_4g045757 56.897 58 25 0 33 90 14 71 1.74e-16 73.9
MS.gene98248.t1 MTR_5g047190 41.758 91 46 2 41 124 1 91 1.50e-15 71.6
MS.gene98248.t1 MTR_4g011850 29.630 135 49 2 93 227 9 97 1.14e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98248.t1 AT5G62020 47.619 336 102 9 26 340 16 298 1.95e-86 263
MS.gene98248.t1 AT4G11660 46.243 346 122 8 25 329 51 373 1.60e-78 245
MS.gene98248.t1 AT1G46264 47.783 203 102 2 28 227 29 230 2.24e-56 187
MS.gene98248.t1 AT4G36990 43.318 217 83 3 21 226 2 189 4.92e-52 174
MS.gene98248.t1 AT2G41690 43.939 198 93 3 31 228 38 217 1.15e-44 153
MS.gene98248.t1 AT4G17750 63.725 102 37 0 23 124 42 143 2.49e-40 148
MS.gene98248.t1 AT3G22830 60.000 110 44 0 15 124 43 152 4.60e-40 145
MS.gene98248.t1 AT1G32330 67.021 94 31 0 31 124 35 128 1.22e-39 146
MS.gene98248.t1 AT1G32330 67.021 94 31 0 31 124 35 128 1.36e-39 146
MS.gene98248.t1 AT5G43840 59.223 103 42 0 31 133 17 119 1.11e-38 139
MS.gene98248.t1 AT3G02990 66.667 96 31 1 29 124 20 114 1.13e-38 143
MS.gene98248.t1 AT3G51910 55.340 103 46 0 31 133 27 129 4.30e-38 137
MS.gene98248.t1 AT5G16820 65.625 96 32 1 29 124 24 118 8.15e-37 138
MS.gene98248.t1 AT5G16820 65.625 96 32 1 29 124 24 118 8.15e-37 138
MS.gene98248.t1 AT2G26150 59.574 94 38 0 31 124 42 135 3.34e-36 134
MS.gene98248.t1 AT2G26150 59.574 94 38 0 31 124 42 135 3.34e-36 134
MS.gene98248.t1 AT5G03720 40.984 183 61 2 33 215 55 190 3.58e-36 135
MS.gene98248.t1 AT5G03720 40.984 183 61 2 33 215 55 190 3.58e-36 135
MS.gene98248.t1 AT3G63350 56.701 97 42 0 27 123 22 118 7.08e-36 131
MS.gene98248.t1 AT5G54070 55.660 106 43 1 30 131 68 173 3.98e-35 130
MS.gene98248.t1 AT4G13980 57.843 102 42 1 34 134 24 125 1.16e-34 132
MS.gene98248.t1 AT3G24520 61.053 95 37 0 30 124 14 108 1.95e-34 129
MS.gene98248.t1 AT1G67970 58.065 93 38 1 33 124 19 111 9.72e-32 122
MS.gene98248.t1 AT5G45710 56.757 111 44 2 29 139 10 116 2.69e-29 115
MS.gene98248.t1 AT5G45710 56.757 111 44 2 29 139 10 116 2.69e-29 115
MS.gene98248.t1 AT4G18880 59.596 99 39 1 26 124 9 106 4.22e-28 113
MS.gene98248.t1 AT4G18870 46.067 89 43 3 34 120 14 99 7.08e-19 85.9
MS.gene98248.t1 AT4G18870 42.391 92 50 1 29 117 139 230 1.10e-18 85.5
MS.gene98248.t1 AT1G77570 39.773 88 48 3 34 117 27 113 4.44e-11 60.8

Find 80 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAATCAAGCGGCGGATT+TGG 0.255860 6.2:-55115290 None:intergenic
TTATTGTGTTTGAAATATTT+AGG 0.302478 6.2:-55114622 None:intergenic
ATGGATCCACGTTTATTGTT+TGG 0.338781 6.2:+55114569 MS.gene98248:CDS
AGAGAAAACGGTTGGGGAAA+TGG 0.359243 6.2:+55115392 MS.gene98248:CDS
AGCTCCGCTGGCGCTCGTGC+TGG 0.361054 6.2:-55115092 None:intergenic
GAAATGAATCCGAAGCTATT+CGG 0.407926 6.2:+55115344 MS.gene98248:CDS
GTTATTTCGTGGAACGAAGA+TGG 0.410793 6.2:+55114550 MS.gene98248:CDS
GGGTGTTGCAACGGTGGTTG+TGG 0.423416 6.2:-55114446 None:intergenic
GTCAAACTCCGGTGAAGAAC+AGG 0.439484 6.2:+55115049 MS.gene98248:CDS
AAGCTATTCGGTGTGGCGAT+TGG 0.446939 6.2:+55115356 MS.gene98248:CDS
CATGGCTCCTTCACCAGCTC+CGG 0.458186 6.2:+55114402 None:intergenic
TTTGAAAATTCCCACCGGTC+AGG 0.467906 6.2:-55114831 None:intergenic
TGGATTCACCGCCGTCATAC+CGG 0.469995 6.2:-55115270 None:intergenic
TCCTTCACCGGTACTGTTGA+CGG 0.472445 6.2:+55114995 MS.gene98248:CDS
GCTTGATTTGATGCCGGCGG+TGG 0.475803 6.2:+55115301 MS.gene98248:CDS
TGTTCTTCACCGGAGTTTGA+CGG 0.477010 6.2:-55115047 None:intergenic
TTCGCCAGCACGAGCGCCAG+CGG 0.503632 6.2:+55115088 MS.gene98248:CDS
TGATGCCGGCGGTGGCAAAA+CGG 0.508254 6.2:+55115309 MS.gene98248:CDS
ACGAGTAAGAGAAAACGGTT+GGG 0.508978 6.2:+55115385 MS.gene98248:CDS
AAATTACTAGCAAAGACAGT+AGG 0.509112 6.2:-55114595 None:intergenic
ATTGAGTTGACGAACAAAGC+TGG 0.509850 6.2:-55114650 None:intergenic
GCTACATCAACCTGGTTCTA+CGG 0.510688 6.2:+55115442 MS.gene98248:CDS
ATCGCCACACCGAATAGCTT+CGG 0.514928 6.2:-55115353 None:intergenic
GGCTCCTTCACCAGCTCCGG+TGG 0.518505 6.2:+55114405 MS.gene98248:CDS
GCAAAACGAGTAAGAGAAAA+CGG 0.519247 6.2:+55115380 MS.gene98248:CDS
GCTCAAGGAAGTAGAGAATC+CGG 0.523566 6.2:+55115251 MS.gene98248:CDS
GGACGTGAAATCTGAACCGT+TGG 0.523870 6.2:+55115463 MS.gene98248:CDS
GATTTCACGTCCGTAGAACC+AGG 0.525961 6.2:-55115452 None:intergenic
GAGTTTGACGGTGAAATCAT+CGG 0.530218 6.2:-55115035 None:intergenic
AACGAGTAAGAGAAAACGGT+TGG 0.531692 6.2:+55115384 MS.gene98248:CDS
GGTATTACCGTCAACAGTAC+CGG 0.536641 6.2:-55115002 None:intergenic
GACGGTTGCAGTTCCTTCAC+CGG 0.537577 6.2:+55114983 MS.gene98248:CDS
GCGGTGGCAAAACGGAGCTC+CGG 0.538825 6.2:+55115317 MS.gene98248:CDS
GGCTTCTATGTGAGATTCAA+CGG 0.547067 6.2:+55114880 MS.gene98248:CDS
CTCAAGGGTGGGTGTTGCAA+CGG 0.547090 6.2:-55114455 None:intergenic
TCCGCCGCTTGATTTGATGC+CGG 0.547623 6.2:+55115295 MS.gene98248:CDS
AAGTAGAGAATCCGGTATGA+CGG 0.547644 6.2:+55115259 MS.gene98248:CDS
CAAACAGACGGTGGTGCTCA+AGG 0.552332 6.2:+55115236 MS.gene98248:CDS
TCAAATGAGTATTTCCGAAG+AGG 0.564250 6.2:+55114849 MS.gene98248:CDS
GAATAGATCTCTGAGACTCA+AGG 0.566281 6.2:-55114471 None:intergenic
TCGACGAAAACGAGAGATTG+AGG 0.567733 6.2:+55115117 MS.gene98248:CDS
AATAGATCTCTGAGACTCAA+GGG 0.568049 6.2:-55114470 None:intergenic
CTTCGGATTCATTTCCTCGC+CGG 0.573414 6.2:-55115336 None:intergenic
AATTACTAGCAAAGACAGTA+GGG 0.574678 6.2:-55114594 None:intergenic
CTATCGACGAGGTTATTTCG+TGG 0.578836 6.2:+55114539 MS.gene98248:CDS
GAAATCATCGGCATCGCCGT+TGG 0.579266 6.2:-55115023 None:intergenic
ACAGACGACGGTGAAGGTGT+TGG 0.580465 6.2:-55114918 None:intergenic
CTGTTGCGGCTACATCAACC+TGG 0.585040 6.2:+55115434 MS.gene98248:CDS
TCATGTTCTTCACAATCCAA+CGG 0.593197 6.2:-55115479 None:intergenic
CGATATCACCTGTTCTTCAC+CGG 0.593359 6.2:-55115057 None:intergenic
ATGATTTCACCGTCAAACTC+CGG 0.595073 6.2:+55115038 MS.gene98248:CDS
ACCGTCAACAGTACCGGTGA+AGG 0.597630 6.2:-55114996 None:intergenic
TTAGAAAAGTAGTACCTGAC+CGG 0.612069 6.2:+55114817 MS.gene98248:CDS
ACCGCCGGCATCAAATCAAG+CGG 0.614650 6.2:-55115299 None:intergenic
AAGGGTGGGTGTTGCAACGG+TGG 0.622209 6.2:-55114452 None:intergenic
AACAATAACAGTCAAACAGA+CGG 0.625879 6.2:+55115224 MS.gene98248:CDS
CGAGTAAGAGAAAACGGTTG+GGG 0.627273 6.2:+55115386 MS.gene98248:CDS
GCCGCTTGATTTGATGCCGG+CGG 0.632055 6.2:+55115298 MS.gene98248:CDS
ACAGACACAGACGACGGTGA+AGG 0.632232 6.2:-55114924 None:intergenic
AAAAGTAGTACCTGACCGGT+GGG 0.635759 6.2:+55114821 MS.gene98248:CDS
GATCTCTGAGACTCAAGGGT+GGG 0.636992 6.2:-55114466 None:intergenic
AGCAGAAACTACAACAGCGA+CGG 0.641238 6.2:+55114965 MS.gene98248:CDS
ACTCATTTGAAAATTCCCAC+CGG 0.642486 6.2:-55114836 None:intergenic
GCCGGCATCAAATCAAGCGG+CGG 0.648795 6.2:-55115296 None:intergenic
GAAAAGTAGTACCTGACCGG+TGG 0.652133 6.2:+55114820 MS.gene98248:CDS
TAGAGAATCCGGTATGACGG+CGG 0.661957 6.2:+55115262 MS.gene98248:CDS
GGCAAAACGGAGCTCCGGCG+AGG 0.665647 6.2:+55115322 MS.gene98248:CDS
GAGAAGATGATACACTGTTG+CGG 0.665700 6.2:+55115420 MS.gene98248:CDS
CGATAGATTTATCATCGACG+AGG 0.666770 6.2:-55114522 None:intergenic
ATTTCCGAAGAGGAGAAAAG+CGG 0.674735 6.2:+55114859 MS.gene98248:CDS
CCAGCTCCGGTGGAAAACAA+CGG 0.682827 6.2:+55114415 MS.gene98248:CDS
ACTGTTGACGGTAATACCAA+CGG 0.686195 6.2:+55115007 MS.gene98248:CDS
AGATCTCTGAGACTCAAGGG+TGG 0.688159 6.2:-55114467 None:intergenic
AGGGTTCCAAACAATAAACG+TGG 0.693378 6.2:-55114575 None:intergenic
CGATGATAAATCTATCGACG+AGG 0.705066 6.2:+55114528 MS.gene98248:CDS
GAATCCGAAGCTATTCGGTG+TGG 0.707189 6.2:+55115349 MS.gene98248:CDS
ATGATAATGATCGAACAGCG+TGG 0.724654 6.2:+55115498 MS.gene98248:CDS
GCAGAAACAGACACAGACGA+CGG 0.733840 6.2:-55114930 None:intergenic
TTCTATGTGAGATTCAACGG+AGG 0.744234 6.2:+55114883 MS.gene98248:CDS
AATAACAGTCAAACAGACGG+TGG 0.748040 6.2:+55115227 MS.gene98248:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTGTGTTTGAAATATTT+AGG - chr6.2:55114625-55114644 None:intergenic 15.0%
!!! TTATATGTTTTTGTCAGAAA+CGG - chr6.2:55114502-55114521 None:intergenic 20.0%
!!! GTTTTGTTGATTTTTTTGCA+GGG + chr6.2:55114792-55114811 MS.gene98248:intron 25.0%
!!! TGTTTTGTTGATTTTTTTGC+AGG + chr6.2:55114791-55114810 MS.gene98248:intron 25.0%
AAATTACTAGCAAAGACAGT+AGG - chr6.2:55114598-55114617 None:intergenic 30.0%
AACAATAACAGTCAAACAGA+CGG + chr6.2:55115224-55115243 MS.gene98248:CDS 30.0%
AATTACTAGCAAAGACAGTA+GGG - chr6.2:55114597-55114616 None:intergenic 30.0%
ACTCATTTGAAAATTCCCAC+CGG - chr6.2:55114839-55114858 None:intergenic 35.0%
ATGGATCCACGTTTATTGTT+TGG + chr6.2:55114569-55114588 MS.gene98248:CDS 35.0%
GAAATGAATCCGAAGCTATT+CGG + chr6.2:55115344-55115363 MS.gene98248:CDS 35.0%
GCAAAACGAGTAAGAGAAAA+CGG + chr6.2:55115380-55115399 MS.gene98248:CDS 35.0%
TCAAATGAGTATTTCCGAAG+AGG + chr6.2:55114849-55114868 MS.gene98248:CDS 35.0%
TCATGTTCTTCACAATCCAA+CGG - chr6.2:55115482-55115501 None:intergenic 35.0%
TTAGAAAAGTAGTACCTGAC+CGG + chr6.2:55114817-55114836 MS.gene98248:CDS 35.0%
TTGACGAATTGAAGCGATAA+GGG + chr6.2:55114755-55114774 MS.gene98248:intron 35.0%
TTTGACGAATTGAAGCGATA+AGG + chr6.2:55114754-55114773 MS.gene98248:intron 35.0%
!! AATAGATCTCTGAGACTCAA+GGG - chr6.2:55114473-55114492 None:intergenic 35.0%
AACGAGTAAGAGAAAACGGT+TGG + chr6.2:55115384-55115403 MS.gene98248:CDS 40.0%
AAGTAGAGAATCCGGTATGA+CGG + chr6.2:55115259-55115278 MS.gene98248:CDS 40.0%
AATAACAGTCAAACAGACGG+TGG + chr6.2:55115227-55115246 MS.gene98248:CDS 40.0%
ACGAGTAAGAGAAAACGGTT+GGG + chr6.2:55115385-55115404 MS.gene98248:CDS 40.0%
ACTGTTGACGGTAATACCAA+CGG + chr6.2:55115007-55115026 MS.gene98248:CDS 40.0%
AGGGTTCCAAACAATAAACG+TGG - chr6.2:55114578-55114597 None:intergenic 40.0%
ATGATTTCACCGTCAAACTC+CGG + chr6.2:55115038-55115057 MS.gene98248:CDS 40.0%
ATTTCCGAAGAGGAGAAAAG+CGG + chr6.2:55114859-55114878 MS.gene98248:CDS 40.0%
CGATAGATTTATCATCGACG+AGG - chr6.2:55114525-55114544 None:intergenic 40.0%
CGATGATAAATCTATCGACG+AGG + chr6.2:55114528-55114547 MS.gene98248:CDS 40.0%
GAGAAGATGATACACTGTTG+CGG + chr6.2:55115420-55115439 MS.gene98248:CDS 40.0%
GAGTTTGACGGTGAAATCAT+CGG - chr6.2:55115038-55115057 None:intergenic 40.0%
GGCTTCTATGTGAGATTCAA+CGG + chr6.2:55114880-55114899 MS.gene98248:CDS 40.0%
TTCTATGTGAGATTCAACGG+AGG + chr6.2:55114883-55114902 MS.gene98248:CDS 40.0%
! ATGATAATGATCGAACAGCG+TGG + chr6.2:55115498-55115517 MS.gene98248:CDS 40.0%
! GTTATTTCGTGGAACGAAGA+TGG + chr6.2:55114550-55114569 MS.gene98248:CDS 40.0%
! GTTTTTGTCAGAAACGGTGT+AGG - chr6.2:55114496-55114515 None:intergenic 40.0%
!! ATTGAGTTGACGAACAAAGC+TGG - chr6.2:55114653-55114672 None:intergenic 40.0%
!! GAATAGATCTCTGAGACTCA+AGG - chr6.2:55114474-55114493 None:intergenic 40.0%
AAAAGTAGTACCTGACCGGT+GGG + chr6.2:55114821-55114840 MS.gene98248:CDS 45.0%
AGAGAAAACGGTTGGGGAAA+TGG + chr6.2:55115392-55115411 MS.gene98248:CDS 45.0%
AGCAGAAACTACAACAGCGA+CGG + chr6.2:55114965-55114984 MS.gene98248:CDS 45.0%
CGAGTAAGAGAAAACGGTTG+GGG + chr6.2:55115386-55115405 MS.gene98248:CDS 45.0%
CGATATCACCTGTTCTTCAC+CGG - chr6.2:55115060-55115079 None:intergenic 45.0%
GCTCAAGGAAGTAGAGAATC+CGG + chr6.2:55115251-55115270 MS.gene98248:CDS 45.0%
GGTATTACCGTCAACAGTAC+CGG - chr6.2:55115005-55115024 None:intergenic 45.0%
TCGACGAAAACGAGAGATTG+AGG + chr6.2:55115117-55115136 MS.gene98248:CDS 45.0%
TGTTCTTCACCGGAGTTTGA+CGG - chr6.2:55115050-55115069 None:intergenic 45.0%
TTTGAAAATTCCCACCGGTC+AGG - chr6.2:55114834-55114853 None:intergenic 45.0%
! ATCAAATCAAGCGGCGGATT+TGG - chr6.2:55115293-55115312 None:intergenic 45.0%
! CTATCGACGAGGTTATTTCG+TGG + chr6.2:55114539-55114558 MS.gene98248:CDS 45.0%
!! GCTACATCAACCTGGTTCTA+CGG + chr6.2:55115442-55115461 MS.gene98248:CDS 45.0%
!! GTTTCTCCGTTGTTTTCCAC+CGG - chr6.2:55114424-55114443 None:intergenic 45.0%
!! AAAGAAAATAAAATAATAAT+AGG - chr6.2:55114700-55114719 None:intergenic 5.0%
ATCGCCACACCGAATAGCTT+CGG - chr6.2:55115356-55115375 None:intergenic 50.0%
CTTCGGATTCATTTCCTCGC+CGG - chr6.2:55115339-55115358 None:intergenic 50.0%
GAAAAGTAGTACCTGACCGG+TGG + chr6.2:55114820-55114839 MS.gene98248:CDS 50.0%
GATTTCACGTCCGTAGAACC+AGG - chr6.2:55115455-55115474 None:intergenic 50.0%
GCAGAAACAGACACAGACGA+CGG - chr6.2:55114933-55114952 None:intergenic 50.0%
GGACGTGAAATCTGAACCGT+TGG + chr6.2:55115463-55115482 MS.gene98248:CDS 50.0%
GTCAAACTCCGGTGAAGAAC+AGG + chr6.2:55115049-55115068 MS.gene98248:CDS 50.0%
TAGAGAATCCGGTATGACGG+CGG + chr6.2:55115262-55115281 MS.gene98248:CDS 50.0%
TCCTTCACCGGTACTGTTGA+CGG + chr6.2:55114995-55115014 MS.gene98248:CDS 50.0%
! GAATCCGAAGCTATTCGGTG+TGG + chr6.2:55115349-55115368 MS.gene98248:CDS 50.0%
!! AAGCTATTCGGTGTGGCGAT+TGG + chr6.2:55115356-55115375 MS.gene98248:CDS 50.0%
!! AGATCTCTGAGACTCAAGGG+TGG - chr6.2:55114470-55114489 None:intergenic 50.0%
!! GATCTCTGAGACTCAAGGGT+GGG - chr6.2:55114469-55114488 None:intergenic 50.0%
!!! GAAGCCGCTTTTCTCCTCTT+CGG - chr6.2:55114866-55114885 None:intergenic 50.0%
ACAGACACAGACGACGGTGA+AGG - chr6.2:55114927-55114946 None:intergenic 55.0%
ACCGCCGGCATCAAATCAAG+CGG - chr6.2:55115302-55115321 None:intergenic 55.0%
CAAACAGACGGTGGTGCTCA+AGG + chr6.2:55115236-55115255 MS.gene98248:CDS 55.0%
CCAGCTCCGGTGGAAAACAA+CGG + chr6.2:55114415-55114434 MS.gene98248:CDS 55.0%
CTGTTGCGGCTACATCAACC+TGG + chr6.2:55115434-55115453 MS.gene98248:CDS 55.0%
GAAATCATCGGCATCGCCGT+TGG - chr6.2:55115026-55115045 None:intergenic 55.0%
GACGGTTGCAGTTCCTTCAC+CGG + chr6.2:55114983-55115002 MS.gene98248:CDS 55.0%
TGGATTCACCGCCGTCATAC+CGG - chr6.2:55115273-55115292 None:intergenic 55.0%
! ACAGACGACGGTGAAGGTGT+TGG - chr6.2:55114921-55114940 None:intergenic 55.0%
! CTCAAGGGTGGGTGTTGCAA+CGG - chr6.2:55114458-55114477 None:intergenic 55.0%
! TCCGCCGCTTGATTTGATGC+CGG + chr6.2:55115295-55115314 MS.gene98248:CDS 55.0%
! TTTTCCACCGGAGCTGGTGA+AGG - chr6.2:55114412-55114431 None:intergenic 55.0%
! TTTTCGTCGAGAAGCTCCGC+TGG - chr6.2:55115107-55115126 None:intergenic 55.0%
!! ACCGTCAACAGTACCGGTGA+AGG - chr6.2:55114999-55115018 None:intergenic 55.0%
GCCGGCATCAAATCAAGCGG+CGG - chr6.2:55115299-55115318 None:intergenic 60.0%
TGATGCCGGCGGTGGCAAAA+CGG + chr6.2:55115309-55115328 MS.gene98248:CDS 60.0%
! AAGGGTGGGTGTTGCAACGG+TGG - chr6.2:55114455-55114474 None:intergenic 60.0%
! GCCGCTTGATTTGATGCCGG+CGG + chr6.2:55115298-55115317 MS.gene98248:CDS 60.0%
! GCTTGATTTGATGCCGGCGG+TGG + chr6.2:55115301-55115320 MS.gene98248:CDS 60.0%
! GGGTGTTGCAACGGTGGTTG+TGG - chr6.2:55114449-55114468 None:intergenic 60.0%
!! CCGTTGTTTTCCACCGGAGC+TGG - chr6.2:55114418-55114437 None:intergenic 60.0%
GCGGTGGCAAAACGGAGCTC+CGG + chr6.2:55115317-55115336 MS.gene98248:CDS 65.0%
! GAGCTCCGTTTTGCCACCGC+CGG - chr6.2:55115317-55115336 None:intergenic 65.0%
GGCAAAACGGAGCTCCGGCG+AGG + chr6.2:55115322-55115341 MS.gene98248:CDS 70.0%
GGCTCCTTCACCAGCTCCGG+TGG + chr6.2:55114405-55114424 MS.gene98248:CDS 70.0%
TTCGCCAGCACGAGCGCCAG+CGG + chr6.2:55115088-55115107 MS.gene98248:CDS 70.0%
AGCTCCGCTGGCGCTCGTGC+TGG - chr6.2:55115095-55115114 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 55114403 55115562 55114403 ID=MS.gene98248
chr6.2 mRNA 55114403 55115562 55114403 ID=MS.gene98248.t1;Parent=MS.gene98248
chr6.2 exon 55114403 55114678 55114403 ID=MS.gene98248.t1.exon1;Parent=MS.gene98248.t1
chr6.2 CDS 55114403 55114678 55114403 ID=cds.MS.gene98248.t1;Parent=MS.gene98248.t1
chr6.2 exon 55114813 55115562 55114813 ID=MS.gene98248.t1.exon2;Parent=MS.gene98248.t1
chr6.2 CDS 55114813 55115562 55114813 ID=cds.MS.gene98248.t1;Parent=MS.gene98248.t1
Gene Sequence

>MS.gene98248

ATGGCTCCTTCACCAGCTCCGGTGGAAAACAACGGAGAAACAACCACAACCACCGTTGCAACACCCACCCTTGAGTCTCAGAGATCTATTCCTACACCGTTTCTGACAAAAACATATAACCTCGTCGATGATAAATCTATCGACGAGGTTATTTCGTGGAACGAAGATGGATCCACGTTTATTGTTTGGAACCCTACTGTCTTTGCTAGTAATTTGCTTCCTAAATATTTCAAACACAATAATTTCTCCAGCTTTGTTCGTCAACTCAATACTTATGTAAATTCAACTTTCTTTCCTATTATTATTTTATTTTCTTTTATGCTTGTTTTTGTATGAATTTTAATTAATATTTTTGACGAATTGAAGCGATAAGGGCTAAATTTTAACTTGTTTTGTTGATTTTTTTGCAGGGATTTAGAAAAGTAGTACCTGACCGGTGGGAATTTTCAAATGAGTATTTCCGAAGAGGAGAAAAGCGGCTTCTATGTGAGATTCAACGGAGGAAGATCTGTTCTCCAACACCTTCACCGTCGTCTGTGTCTGTTTCTGCTGCTGTAACAGCAGCAGAAACTACAACAGCGACGGTTGCAGTTCCTTCACCGGTACTGTTGACGGTAATACCAACGGCGATGCCGATGATTTCACCGTCAAACTCCGGTGAAGAACAGGTGATATCGTCGAGTTCTTCGCCAGCACGAGCGCCAGCGGAGCTTCTCGACGAAAACGAGAGATTGAGGAAAGAGAATAATTTATTGAATAAAGAGCTTGCTGAGATGAGATTGCTTTGTAACAATATATACTCTCTAATGTCAAATTTTGCAAACAATAACAGTCAAACAGACGGTGGTGCTCAAGGAAGTAGAGAATCCGGTATGACGGCGGTGAATCCAAATCCGCCGCTTGATTTGATGCCGGCGGTGGCAAAACGGAGCTCCGGCGAGGAAATGAATCCGAAGCTATTCGGTGTGGCGATTGGAGCAAAACGAGTAAGAGAAAACGGTTGGGGAAATGGTGAAAGAGAAGATGATACACTGTTGCGGCTACATCAACCTGGTTCTACGGACGTGAAATCTGAACCGTTGGATTGTGAAGAACATGATAATGATCGAACAGCGTGGTTGAATCAGAGTCGTAGAAAGAATCAGAATTTGTGTAAATGA
Protein sequence

>MS.gene98248.t1

MAPSPAPVENNGETTTTTVATPTLESQRSIPTPFLTKTYNLVDDKSIDEVISWNEDGSTFIVWNPTVFASNLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKICSPTPSPSSVSVSAAVTAAETTTATVAVPSPVLLTVIPTAMPMISPSNSGEEQVISSSSSPARAPAELLDENERLRKENNLLNKELAEMRLLCNNIYSLMSNFANNNSQTDGGAQGSRESGMTAVNPNPPLDLMPAVAKRSSGEEMNPKLFGVAIGAKRVRENGWGNGEREDDTLLRLHQPGSTDVKSEPLDCEEHDNDRTAWLNQSRRKNQNLCK