Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98270.t1 | XP_024635817.1 | 55.6 | 549 | 73 | 8 | 1 | 544 | 111 | 493 | 1.40E-137 | 500 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98270.t1 | Q6K5K2 | 29.1 | 182 | 115 | 4 | 4 | 176 | 403 | 579 | 6.2e-09 | 63.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98270.t1 | A0A1S2YA87 | 37.1 | 563 | 142 | 10 | 1 | 544 | 53 | 422 | 2.4e-70 | 276.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene98270.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98270.t1 | MTR_3g075140 | 75.521 | 192 | 34 | 4 | 1 | 189 | 70 | 251 | 1.57e-69 | 224 |
| MS.gene98270.t1 | MTR_3g075130 | 84.615 | 52 | 8 | 0 | 493 | 544 | 46 | 97 | 7.74e-23 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 97 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTGCAAATGAACAAAT+TGG | 0.173912 | 3.1:-61714942 | None:intergenic |
| GCCAAAGCCAAATGTTATTA+AGG | 0.179207 | 3.1:+61714489 | MS.gene98270:CDS |
| GAAACAACTTCTACGCTATT+TGG | 0.184746 | 3.1:-61712340 | None:intergenic |
| TTCAGCAAACAGATCCTTAT+TGG | 0.209131 | 3.1:-61713072 | None:intergenic |
| TTCAGCAAACAGGTCCTTAT+TGG | 0.223966 | 3.1:-61712858 | None:intergenic |
| CAATGTGAATTTGAGGATTT+AGG | 0.237332 | 3.1:-61713235 | None:intergenic |
| GCATGTGAACTTGAAACTTC+TGG | 0.292503 | 3.1:+61712806 | MS.gene98270:CDS |
| GCATGTGAACTTGAAACTTC+TGG | 0.292503 | 3.1:+61713020 | MS.gene98270:CDS |
| AACTCTCCCTTAATAACATT+TGG | 0.298918 | 3.1:-61714496 | None:intergenic |
| CAGATCCTTATTGGACATAA+TGG | 0.316742 | 3.1:-61713063 | None:intergenic |
| AAGATGGTAATGTAGATAGA+AGG | 0.318676 | 3.1:+61712365 | MS.gene98270:CDS |
| TCGGCTCACAAGCTTGAAAA+AGG | 0.326977 | 3.1:+61712142 | MS.gene98270:CDS |
| TATTTCCAATGGAGAAGTTC+AGG | 0.343096 | 3.1:+61713563 | MS.gene98270:CDS |
| ACTTGACGTGCCAATGCATA+TGG | 0.351764 | 3.1:+61712297 | MS.gene98270:CDS |
| CCCTTAATAACATTTGGCTT+TGG | 0.353606 | 3.1:-61714490 | None:intergenic |
| AGAATCCATTATGTCCAATA+AGG | 0.365908 | 3.1:+61713058 | MS.gene98270:CDS |
| AATTTCCTCTTTGAACATGA+TGG | 0.372502 | 3.1:-61713942 | None:intergenic |
| AGAATCCATTATGTCCAATA+AGG | 0.374966 | 3.1:+61712844 | MS.gene98270:CDS |
| AGCCAAGTCACCGAGAGTTT+TGG | 0.375722 | 3.1:+61712562 | MS.gene98270:CDS |
| TGTTACAGCCCATCTCTTAC+CGG | 0.383658 | 3.1:-61712065 | None:intergenic |
| CAATGAGATGACAAATGATA+TGG | 0.387382 | 3.1:+61714158 | MS.gene98270:CDS |
| AATGAAAATTTGAATGCAAC+AGG | 0.392051 | 3.1:+61714959 | MS.gene98270:CDS |
| CCAAAGCCAAATGTTATTAA+GGG | 0.399077 | 3.1:+61714490 | MS.gene98270:CDS |
| CAGGTCCTTATTGGACATAA+TGG | 0.407699 | 3.1:-61712849 | None:intergenic |
| TACCGAAGCCTTCAGAAAAC+TGG | 0.412567 | 3.1:-61713973 | None:intergenic |
| TCATTGCAAATGAACAAATT+GGG | 0.414322 | 3.1:-61714941 | None:intergenic |
| TTTGAAGAAGTGTTGGGCTC+AGG | 0.414789 | 3.1:+61712478 | MS.gene98270:CDS |
| AGAGCGGCCAAAGGTTGTTA+AGG | 0.418441 | 3.1:+61713503 | MS.gene98270:intron |
| AGCCCATCTCTTACCGGTTG+AGG | 0.418637 | 3.1:-61712059 | None:intergenic |
| CTCATACGCTTCTAAATCGT+TGG | 0.425403 | 3.1:+61712507 | MS.gene98270:CDS |
| ATCTGAGTCATGATTTACTT+TGG | 0.428076 | 3.1:-61713810 | None:intergenic |
| CTCGAGGATTCAACCTCAAC+CGG | 0.431548 | 3.1:+61712046 | MS.gene98270:CDS |
| CAACGATTTAGAAGCGTATG+AGG | 0.431571 | 3.1:-61712506 | None:intergenic |
| AAATCCTACCATGTCATTGT+TGG | 0.435100 | 3.1:+61712006 | None:intergenic |
| ACTTTGATCATCTGAGAGAT+TGG | 0.438569 | 3.1:-61714791 | None:intergenic |
| GTAGAAGTTGTTTCAGAAGA+TGG | 0.439449 | 3.1:+61712349 | MS.gene98270:CDS |
| AATTTCATTGAACCTCTGTT+TGG | 0.446936 | 3.1:-61714767 | None:intergenic |
| TACCTAAGCCTTCAGCAAAC+AGG | 0.461021 | 3.1:-61712868 | None:intergenic |
| ATTTCAGAAGTCATGTTCAT+AGG | 0.463203 | 3.1:-61714328 | None:intergenic |
| GACGCACCAATGTGAATTTG+AGG | 0.465177 | 3.1:-61713242 | None:intergenic |
| GAGCGGCCAAAGGTTGTTAA+GGG | 0.481719 | 3.1:+61713504 | MS.gene98270:intron |
| CTTGACGTGCCAATGCATAT+GGG | 0.487224 | 3.1:+61712298 | MS.gene98270:CDS |
| TCTTTCTTAATAATAATCTC+TGG | 0.487369 | 3.1:-61715068 | None:intergenic |
| GATCTGTTTGCTGAAGGCTT+AGG | 0.490003 | 3.1:+61713080 | MS.gene98270:CDS |
| GCACTCCTGAACTTCTCCAT+TGG | 0.495019 | 3.1:-61713568 | None:intergenic |
| GAAACTTGAAGAAAATAAAG+AGG | 0.495114 | 3.1:+61713913 | MS.gene98270:CDS |
| TACCAAAACTCTCGGTGACT+TGG | 0.498675 | 3.1:-61712564 | None:intergenic |
| TGGAGAAGTTCAGGAGTGCC+AGG | 0.499155 | 3.1:+61713572 | MS.gene98270:CDS |
| GAACACCTCACAGGAGATAG+TGG | 0.505357 | 3.1:-61714554 | None:intergenic |
| ATGATAAGTCTATGTGTGAA+AGG | 0.505569 | 3.1:+61712218 | MS.gene98270:CDS |
| AGATGGTAATGTAGATAGAA+GGG | 0.509570 | 3.1:+61712366 | MS.gene98270:CDS |
| AACAGATCGATTATTTCCAA+TGG | 0.515207 | 3.1:+61713552 | MS.gene98270:CDS |
| TTGCACCTCTCTTCAGCCGC+CGG | 0.523707 | 3.1:-61713197 | None:intergenic |
| CAACCTCAACCGGTAAGAGA+TGG | 0.526023 | 3.1:+61712056 | MS.gene98270:CDS |
| TTGAAGAAGTGTTGGGCTCA+GGG | 0.526257 | 3.1:+61712479 | MS.gene98270:CDS |
| TGCCAGGTTGCGATGAGCTT+AGG | 0.529422 | 3.1:+61713588 | MS.gene98270:CDS |
| AAATTGGGAGTAATTTCCAT+TGG | 0.531889 | 3.1:-61714926 | None:intergenic |
| TCCTATGTTTGAAGAAGTGT+TGG | 0.533675 | 3.1:+61712471 | MS.gene98270:CDS |
| GACCTGTTTGCTGAAGGCTT+AGG | 0.536114 | 3.1:+61712866 | MS.gene98270:CDS |
| GATCAAGCAGCGAAATTCAA+AGG | 0.540326 | 3.1:+61712767 | MS.gene98270:CDS |
| TTGACGTGCCAATGCATATG+GGG | 0.554500 | 3.1:+61712299 | MS.gene98270:CDS |
| GATCAAGCAGCGATATTCAA+AGG | 0.555526 | 3.1:+61712981 | MS.gene98270:CDS |
| AATAAGGACCTGTTTGCTGA+AGG | 0.555855 | 3.1:+61712860 | MS.gene98270:CDS |
| AACCTCAACCGGTAAGAGAT+GGG | 0.557870 | 3.1:+61712057 | MS.gene98270:CDS |
| AATAAGGATCTGTTTGCTGA+AGG | 0.559694 | 3.1:+61713074 | MS.gene98270:CDS |
| ATGCATCATTTAGATCTACA+TGG | 0.559779 | 3.1:-61712432 | None:intergenic |
| TTCAATTGCAGAGCGGCCAA+AGG | 0.561117 | 3.1:+61713494 | MS.gene98270:intron |
| CCTACCATGTCATTGTTGGT+TGG | 0.564330 | 3.1:+61712010 | None:intergenic |
| AAGAGAAGTAGATGCAGCAG+TGG | 0.569759 | 3.1:+61712271 | MS.gene98270:CDS |
| TACCTAAGCTCATCGCAACC+TGG | 0.573695 | 3.1:-61713590 | None:intergenic |
| ACTTCTGGAAGAAGCAAAGA+GGG | 0.576572 | 3.1:+61712821 | MS.gene98270:CDS |
| TGAAAAGAAGAAAATGCCAA+TGG | 0.577507 | 3.1:+61714910 | MS.gene98270:CDS |
| AAACTTGAAGAAAATAAAGA+GGG | 0.577987 | 3.1:+61713914 | MS.gene98270:CDS |
| GTGATCCGGCGGCTGAAGAG+AGG | 0.590760 | 3.1:+61713192 | MS.gene98270:CDS |
| CCCAACACTTCTTCAAACAT+AGG | 0.592689 | 3.1:-61712472 | None:intergenic |
| AATTATGGTACCAAAACTCT+CGG | 0.597569 | 3.1:-61712572 | None:intergenic |
| CCTATGTTTGAAGAAGTGTT+GGG | 0.601870 | 3.1:+61712472 | MS.gene98270:CDS |
| TGATAAGTCTATGTGTGAAA+GGG | 0.602703 | 3.1:+61712219 | MS.gene98270:CDS |
| TTCTTAATAATAATCTCTGG+CGG | 0.603010 | 3.1:-61715065 | None:intergenic |
| GTAACAGTATCAAAAGCTGA+TGG | 0.606610 | 3.1:+61712082 | MS.gene98270:CDS |
| CTTACCAACCAACAATGACA+TGG | 0.609549 | 3.1:-61712014 | None:intergenic |
| CTAAATCCTCAAATTCACAT+TGG | 0.614716 | 3.1:+61713236 | MS.gene98270:CDS |
| ATTATGAATGAACACCTCAC+AGG | 0.618032 | 3.1:-61714563 | None:intergenic |
| AATGATAAATTGAATGAACC+AGG | 0.618698 | 3.1:+61714361 | MS.gene98270:CDS |
| AGCGGCCAAAGGTTGTTAAG+GGG | 0.624198 | 3.1:+61713505 | MS.gene98270:CDS |
| TCAGATGATCAAAGTCACAT+TGG | 0.632225 | 3.1:+61714799 | MS.gene98270:CDS |
| AACTTCTGGAAGAAGCAAAG+AGG | 0.635663 | 3.1:+61712820 | MS.gene98270:CDS |
| TGAAGAAGTGTTGGGCTCAG+GGG | 0.642137 | 3.1:+61712480 | MS.gene98270:CDS |
| CAGATCCATCATGTTCAAAG+AGG | 0.644431 | 3.1:+61713937 | MS.gene98270:CDS |
| TGGTAAGAAAATCTATCTCG+AGG | 0.647585 | 3.1:+61712030 | MS.gene98270:CDS |
| GCGGCCAAAGGTTGTTAAGG+GGG | 0.658866 | 3.1:+61713506 | MS.gene98270:CDS |
| AACTTCTGGAAGAAGCAAAG+AGG | 0.665509 | 3.1:+61713034 | MS.gene98270:CDS |
| ATGGATGCACGAATGCACAT+TGG | 0.687374 | 3.1:+61714177 | MS.gene98270:CDS |
| TGCAGCCACTATCTCCTGTG+AGG | 0.708925 | 3.1:+61714549 | MS.gene98270:CDS |
| AGATGAAACTGTGAGCTCTG+TGG | 0.734871 | 3.1:+61715100 | MS.gene98270:CDS |
| TGACGTGCCAATGCATATGG+GGG | 0.743356 | 3.1:+61712300 | MS.gene98270:CDS |
| AACATGACTTCTGAAATGCA+CGG | 0.757981 | 3.1:+61714334 | MS.gene98270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATAAAATACCAATTTT+AGG | - | chr3.1:61713745-61713764 | None:intergenic | 10.0% |
| !!! | TTTTATTATTTTCATTACAT+TGG | + | chr3.1:61713755-61713774 | MS.gene98270:intron | 10.0% |
| !! | AAGATAAATATTTCTTAACT+TGG | + | chr3.1:61712631-61712650 | MS.gene98270:intron | 15.0% |
| !! | TGTTAATTATTTCATTACAT+TGG | + | chr3.1:61712942-61712961 | MS.gene98270:intron | 15.0% |
| !! | TTTATCATTATTATTACATG+TGG | + | chr3.1:61714996-61715015 | MS.gene98270:intron | 15.0% |
| !!! | TTTCGAAAAAATAATTTTCT+TGG | + | chr3.1:61713851-61713870 | MS.gene98270:CDS | 15.0% |
| !!! | TTTGTTTTTTGTTTTGTAAT+GGG | + | chr3.1:61712606-61712625 | MS.gene98270:intron | 15.0% |
| !! | AAACTTGAAGAAAATAAAGA+GGG | + | chr3.1:61713914-61713933 | MS.gene98270:CDS | 20.0% |
| !! | AATAATAAAAAACCAACTGT+AGG | - | chr3.1:61712719-61712738 | None:intergenic | 20.0% |
| !! | GACCAAAAAAAAAAAATATG+TGG | - | chr3.1:61714839-61714858 | None:intergenic | 20.0% |
| !! | TAAATTATCATGATTTCAGA+TGG | + | chr3.1:61714292-61714311 | MS.gene98270:intron | 20.0% |
| !! | TATATATATATCAGTTTCAG+TGG | + | chr3.1:61714246-61714265 | MS.gene98270:intron | 20.0% |
| !! | TCTTTCTTAATAATAATCTC+TGG | - | chr3.1:61715071-61715090 | None:intergenic | 20.0% |
| !!! | ACTTTGATTTTGTTTTGTAA+AGG | + | chr3.1:61713635-61713654 | MS.gene98270:intron | 20.0% |
| !!! | ATTTTTCTGAAAAAAGAAAG+AGG | + | chr3.1:61712245-61712264 | MS.gene98270:CDS | 20.0% |
| !!! | CTTTGATTTTGTTTTGTAAA+GGG | + | chr3.1:61713636-61713655 | MS.gene98270:intron | 20.0% |
| !!! | CTTTGTTTTTTGTTTTGTAA+TGG | + | chr3.1:61712605-61712624 | MS.gene98270:intron | 20.0% |
| !!! | GATAATTTATTGATTACTTC+AGG | - | chr3.1:61714281-61714300 | None:intergenic | 20.0% |
| !!! | GTCCACATATTTTTTTTTTT+TGG | + | chr3.1:61714834-61714853 | MS.gene98270:intron | 20.0% |
| ! | AATGAAAATTTGAATGCAAC+AGG | + | chr3.1:61714959-61714978 | MS.gene98270:CDS | 25.0% |
| ! | AATGATAAATTGAATGAACC+AGG | + | chr3.1:61714361-61714380 | MS.gene98270:CDS | 25.0% |
| ! | AGAAACATATAAGAAATACC+TGG | - | chr3.1:61714382-61714401 | None:intergenic | 25.0% |
| ! | ATCATCTCAGTTATAATTTC+AGG | + | chr3.1:61714887-61714906 | MS.gene98270:intron | 25.0% |
| ! | ATTTATCCACATTAGATTAC+TGG | + | chr3.1:61714428-61714447 | MS.gene98270:intron | 25.0% |
| ! | CAAAGTTATTGTGCAAATTA+TGG | - | chr3.1:61712590-61712609 | None:intergenic | 25.0% |
| ! | CGTTGGAAAGAAAAAAAAAT+TGG | + | chr3.1:61712524-61712543 | MS.gene98270:CDS | 25.0% |
| ! | GAAACTTGAAGAAAATAAAG+AGG | + | chr3.1:61713913-61713932 | MS.gene98270:CDS | 25.0% |
| ! | TATAACTGAGATGATTACTT+CGG | - | chr3.1:61714882-61714901 | None:intergenic | 25.0% |
| ! | TATGATTTCATGCAAAATGA+AGG | + | chr3.1:61713318-61713337 | MS.gene98270:intron | 25.0% |
| ! | TCATTGCAAATGAACAAATT+GGG | - | chr3.1:61714944-61714963 | None:intergenic | 25.0% |
| ! | TTCATTGCAAATGAACAAAT+TGG | - | chr3.1:61714945-61714964 | None:intergenic | 25.0% |
| ! | TTCTTAATAATAATCTCTGG+CGG | - | chr3.1:61715068-61715087 | None:intergenic | 25.0% |
| !! | ATTCTTGTTCATTTTGTTGA+CGG | + | chr3.1:61713123-61713142 | MS.gene98270:intron | 25.0% |
| !! | CATTTTGCATGAAATCATAA+TGG | - | chr3.1:61713317-61713336 | None:intergenic | 25.0% |
| !! | GTTTTGCATATTGATATTTG+TGG | + | chr3.1:61714733-61714752 | MS.gene98270:intron | 25.0% |
| !! | TGTTCTTTTTGTTAATGACT+CGG | + | chr3.1:61714019-61714038 | MS.gene98270:intron | 25.0% |
| !!! | AATTTGTTATGATTTCCTAC+AGG | + | chr3.1:61714114-61714133 | MS.gene98270:intron | 25.0% |
| !!! | ACATTTCATTGCTCATTTTT+AGG | + | chr3.1:61712740-61712759 | MS.gene98270:intron | 25.0% |
| !!! | ATTTGTTATGATTTCCTACA+GGG | + | chr3.1:61714115-61714134 | MS.gene98270:intron | 25.0% |
| !!! | ATTTTGGGAATCATTTTCAT+AGG | - | chr3.1:61713349-61713368 | None:intergenic | 25.0% |
| AAATTGGGAGTAATTTCCAT+TGG | - | chr3.1:61714929-61714948 | None:intergenic | 30.0% | |
| AACAGATCGATTATTTCCAA+TGG | + | chr3.1:61713552-61713571 | MS.gene98270:CDS | 30.0% | |
| AACTCTCCCTTAATAACATT+TGG | - | chr3.1:61714499-61714518 | None:intergenic | 30.0% | |
| AATTATGGTACCAAAACTCT+CGG | - | chr3.1:61712575-61712594 | None:intergenic | 30.0% | |
| AATTTCATTGAACCTCTGTT+TGG | - | chr3.1:61714770-61714789 | None:intergenic | 30.0% | |
| AATTTCCTCTTTGAACATGA+TGG | - | chr3.1:61713945-61713964 | None:intergenic | 30.0% | |
| ACATTAACATGTTTGATTGC+AGG | + | chr3.1:61715041-61715060 | MS.gene98270:intron | 30.0% | |
| ACTTGGTTGTTTATACTTGT+AGG | + | chr3.1:61712648-61712667 | MS.gene98270:intron | 30.0% | |
| AGAATCCATTATGTCCAATA+AGG | + | chr3.1:61712844-61712863 | MS.gene98270:CDS | 30.0% | |
| AGAATCCGATAATATAACTG+CGG | - | chr3.1:61713456-61713475 | None:intergenic | 30.0% | |
| ATAACTGAGATGATTACTTC+GGG | - | chr3.1:61714881-61714900 | None:intergenic | 30.0% | |
| ATCTGAGTCATGATTTACTT+TGG | - | chr3.1:61713813-61713832 | None:intergenic | 30.0% | |
| ATGATAAGTCTATGTGTGAA+AGG | + | chr3.1:61712218-61712237 | MS.gene98270:CDS | 30.0% | |
| ATGCATCATTTAGATCTACA+TGG | - | chr3.1:61712435-61712454 | None:intergenic | 30.0% | |
| ATTACTTCAAGAGAATCAAG+TGG | - | chr3.1:61713287-61713306 | None:intergenic | 30.0% | |
| ATTTCAGAAGTCATGTTCAT+AGG | - | chr3.1:61714331-61714350 | None:intergenic | 30.0% | |
| CAACTTATCATTTGATCAGA+TGG | - | chr3.1:61714706-61714725 | None:intergenic | 30.0% | |
| CAATGAGATGACAAATGATA+TGG | + | chr3.1:61714158-61714177 | MS.gene98270:CDS | 30.0% | |
| CAATGTGAATTTGAGGATTT+AGG | - | chr3.1:61713238-61713257 | None:intergenic | 30.0% | |
| CATTAACATGTTTGATTGCA+GGG | + | chr3.1:61715042-61715061 | MS.gene98270:intron | 30.0% | |
| CCAAAGCCAAATGTTATTAA+GGG | + | chr3.1:61714490-61714509 | MS.gene98270:CDS | 30.0% | |
| CTAAATCCTCAAATTCACAT+TGG | + | chr3.1:61713236-61713255 | MS.gene98270:CDS | 30.0% | |
| CTTGGTTGTTTATACTTGTA+GGG | + | chr3.1:61712649-61712668 | MS.gene98270:intron | 30.0% | |
| GTGTGAAGATTTCCTAAAAT+TGG | + | chr3.1:61713730-61713749 | MS.gene98270:intron | 30.0% | |
| TGAAAAGAAGAAAATGCCAA+TGG | + | chr3.1:61714910-61714929 | MS.gene98270:CDS | 30.0% | |
| TGATAAGTCTATGTGTGAAA+GGG | + | chr3.1:61712219-61712238 | MS.gene98270:CDS | 30.0% | |
| TTGTGAGGCAAAATCAAATA+GGG | - | chr3.1:61714607-61714626 | None:intergenic | 30.0% | |
| TTGTTTCAGCCACTAATATA+GGG | + | chr3.1:61714063-61714082 | MS.gene98270:intron | 30.0% | |
| TTTGTGAGGCAAAATCAAAT+AGG | - | chr3.1:61714608-61714627 | None:intergenic | 30.0% | |
| TTTGTTTCAGCCACTAATAT+AGG | + | chr3.1:61714062-61714081 | MS.gene98270:intron | 30.0% | |
| ! | AAGATGGTAATGTAGATAGA+AGG | + | chr3.1:61712365-61712384 | MS.gene98270:CDS | 30.0% |
| ! | AGATGGTAATGTAGATAGAA+GGG | + | chr3.1:61712366-61712385 | MS.gene98270:CDS | 30.0% |
| ! | ATCATTGAAGCTGTCAATTT+TGG | - | chr3.1:61713365-61713384 | None:intergenic | 30.0% |
| ! | CTTCTTGTTCATTTTGTTGA+CGG | + | chr3.1:61712909-61712928 | MS.gene98270:intron | 30.0% |
| ! | GCTTGAAAAAGGATATTTTC+TGG | + | chr3.1:61712153-61712172 | MS.gene98270:CDS | 30.0% |
| ! | TCATTGAAGCTGTCAATTTT+GGG | - | chr3.1:61713364-61713383 | None:intergenic | 30.0% |
| ! | TTTGTTATGATTTCCTACAG+GGG | + | chr3.1:61714116-61714135 | MS.gene98270:intron | 30.0% |
| !! | TGATGGTTCTTTTGCTTTTA+AGG | + | chr3.1:61712099-61712118 | MS.gene98270:CDS | 30.0% |
| !! | TTTTGCTTTTAAGGAAGGAT+GGG | + | chr3.1:61712108-61712127 | MS.gene98270:CDS | 30.0% |
| !!! | CATTACATTGGCTCATTTTT+AGG | + | chr3.1:61712954-61712973 | MS.gene98270:intron | 30.0% |
| !!! | TCATTACATTGGCTCATTTT+AGG | + | chr3.1:61712953-61712972 | MS.gene98270:intron | 30.0% |
| ACTTTGATCATCTGAGAGAT+TGG | - | chr3.1:61714794-61714813 | None:intergenic | 35.0% | |
| ATAATATAACTGCGGACCAA+TGG | - | chr3.1:61713448-61713467 | None:intergenic | 35.0% | |
| ATTATGAATGAACACCTCAC+AGG | - | chr3.1:61714566-61714585 | None:intergenic | 35.0% | |
| CAGAATCCAGTAATCTAATG+TGG | - | chr3.1:61714437-61714456 | None:intergenic | 35.0% | |
| CAGATCCTTATTGGACATAA+TGG | - | chr3.1:61713066-61713085 | None:intergenic | 35.0% | |
| CCTGATCACTTCCTAAAAAT+GGG | - | chr3.1:61713781-61713800 | None:intergenic | 35.0% | |
| GAAACAACTTCTACGCTATT+TGG | - | chr3.1:61712343-61712362 | None:intergenic | 35.0% | |
| GCCAAAGCCAAATGTTATTA+AGG | + | chr3.1:61714489-61714508 | MS.gene98270:CDS | 35.0% | |
| GTAACAGTATCAAAAGCTGA+TGG | + | chr3.1:61712082-61712101 | MS.gene98270:CDS | 35.0% | |
| GTTTATACTTGTAGGGTTTC+AGG | + | chr3.1:61712656-61712675 | MS.gene98270:intron | 35.0% | |
| TATTATCGGATTCTGTCTCA+CGG | + | chr3.1:61713462-61713481 | MS.gene98270:intron | 35.0% | |
| TATTTCCAATGGAGAAGTTC+AGG | + | chr3.1:61713563-61713582 | MS.gene98270:CDS | 35.0% | |
| TCAGATGATCAAAGTCACAT+TGG | + | chr3.1:61714799-61714818 | MS.gene98270:CDS | 35.0% | |
| TGGTAAGAAAATCTATCTCG+AGG | + | chr3.1:61712030-61712049 | MS.gene98270:CDS | 35.0% | |
| TTCAAACACTTGTAGAGCTT+CGG | + | chr3.1:61713689-61713708 | MS.gene98270:intron | 35.0% | |
| TTCAGCAAACAGATCCTTAT+TGG | - | chr3.1:61713075-61713094 | None:intergenic | 35.0% | |
| TTGGTCCGCAGTTATATTAT+CGG | + | chr3.1:61713448-61713467 | MS.gene98270:intron | 35.0% | |
| TTTCTCACTGTCATTGTTTG+TGG | + | chr3.1:61714397-61714416 | MS.gene98270:intron | 35.0% | |
| ! | AATAAGGATCTGTTTGCTGA+AGG | + | chr3.1:61713074-61713093 | MS.gene98270:CDS | 35.0% |
| ! | CCCTTAATAACATTTGGCTT+TGG | - | chr3.1:61714493-61714512 | None:intergenic | 35.0% |
| ! | CGGATTAATTTTGTGCAACT+TGG | + | chr3.1:61714039-61714058 | MS.gene98270:intron | 35.0% |
| ! | GAATTTGTTCAATTGCAGAG+CGG | + | chr3.1:61713487-61713506 | MS.gene98270:intron | 35.0% |
| ! | GTAGAAGTTGTTTCAGAAGA+TGG | + | chr3.1:61712349-61712368 | MS.gene98270:CDS | 35.0% |
| ! | TACCAAAAACCTAGTTTGTG+AGG | - | chr3.1:61714622-61714641 | None:intergenic | 35.0% |
| ! | TCCTATGTTTGAAGAAGTGT+TGG | + | chr3.1:61712471-61712490 | MS.gene98270:CDS | 35.0% |
| ! | TTGATTTTGCCTCACAAACT+AGG | + | chr3.1:61714610-61714629 | MS.gene98270:intron | 35.0% |
| !! | AACATGACTTCTGAAATGCA+CGG | + | chr3.1:61714334-61714353 | MS.gene98270:CDS | 35.0% |
| !! | ATTTTTAGGAAGTGATCAGG+CGG | + | chr3.1:61713781-61713800 | MS.gene98270:intron | 35.0% |
| !! | CATTACATTGGCCCATTTTT+AGG | + | chr3.1:61713767-61713786 | MS.gene98270:intron | 35.0% |
| !! | CCTATGTTTGAAGAAGTGTT+GGG | + | chr3.1:61712472-61712491 | MS.gene98270:CDS | 35.0% |
| !! | CTTTTGCTTTTAAGGAAGGA+TGG | + | chr3.1:61712107-61712126 | MS.gene98270:CDS | 35.0% |
| !! | GGTTCTTTTGCTTTTAAGGA+AGG | + | chr3.1:61712103-61712122 | MS.gene98270:CDS | 35.0% |
| !!! | GGTTTTTGGTAGCAAGATTA+TGG | + | chr3.1:61714631-61714650 | MS.gene98270:intron | 35.0% |
| ATTATCGGATTCTGTCTCAC+GGG | + | chr3.1:61713463-61713482 | MS.gene98270:intron | 40.0% | |
| CAGATCCATCATGTTCAAAG+AGG | + | chr3.1:61713937-61713956 | MS.gene98270:CDS | 40.0% | |
| CAGGTCCTTATTGGACATAA+TGG | - | chr3.1:61712852-61712871 | None:intergenic | 40.0% | |
| CCCAACACTTCTTCAAACAT+AGG | - | chr3.1:61712475-61712494 | None:intergenic | 40.0% | |
| CTCATACGCTTCTAAATCGT+TGG | + | chr3.1:61712507-61712526 | MS.gene98270:CDS | 40.0% | |
| GAGGCAAAATCAAATAGGGA+CGG | - | chr3.1:61714603-61714622 | None:intergenic | 40.0% | |
| GATCAAGCAGCGAAATTCAA+AGG | + | chr3.1:61712767-61712786 | MS.gene98270:CDS | 40.0% | |
| GATCAAGCAGCGATATTCAA+AGG | + | chr3.1:61712981-61713000 | MS.gene98270:CDS | 40.0% | |
| GATTACTGGATTCTGTCTCA+CGG | + | chr3.1:61714442-61714461 | MS.gene98270:intron | 40.0% | |
| GCATGTGAACTTGAAACTTC+TGG | + | chr3.1:61712806-61712825 | MS.gene98270:CDS | 40.0% | |
| GCCTGATCACTTCCTAAAAA+TGG | - | chr3.1:61713782-61713801 | None:intergenic | 40.0% | |
| GTGTGATGATTTCCTACAGT+TGG | + | chr3.1:61712704-61712723 | MS.gene98270:intron | 40.0% | |
| TCAAACACTTGTAGAGCTTC+GGG | + | chr3.1:61713690-61713709 | MS.gene98270:intron | 40.0% | |
| TTCAGCAAACAGGTCCTTAT+TGG | - | chr3.1:61712861-61712880 | None:intergenic | 40.0% | |
| TTGTAGGGTTTCAGGCATTA+TGG | + | chr3.1:61712664-61712683 | MS.gene98270:intron | 40.0% | |
| TTTCTCGCTACCATTGTTTG+TGG | + | chr3.1:61713416-61713435 | MS.gene98270:intron | 40.0% | |
| ! | AACTTCTGGAAGAAGCAAAG+AGG | + | chr3.1:61712820-61712839 | MS.gene98270:CDS | 40.0% |
| ! | AATAAGGACCTGTTTGCTGA+AGG | + | chr3.1:61712860-61712879 | MS.gene98270:CDS | 40.0% |
| ! | ACTTCTGGAAGAAGCAAAGA+GGG | + | chr3.1:61712821-61712840 | MS.gene98270:CDS | 40.0% |
| ! | AGGATGGGATGTTTTCTCAT+CGG | + | chr3.1:61712123-61712142 | MS.gene98270:CDS | 40.0% |
| ! | CAACGATTTAGAAGCGTATG+AGG | - | chr3.1:61712509-61712528 | None:intergenic | 40.0% |
| ! | GTTTTCAGAACACCAAACAG+AGG | + | chr3.1:61714755-61714774 | MS.gene98270:intron | 40.0% |
| ! | TGCCTCACAAACTAGGTTTT+TGG | + | chr3.1:61714617-61714636 | MS.gene98270:intron | 40.0% |
| !! | CCCATTTTTAGGAAGTGATC+AGG | + | chr3.1:61713778-61713797 | MS.gene98270:intron | 40.0% |
| !! | GCTCATTTTAGGAAGTGATC+CGG | + | chr3.1:61713178-61713197 | MS.gene98270:intron | 40.0% |
| AACCTCAACCGGTAAGAGAT+GGG | + | chr3.1:61712057-61712076 | MS.gene98270:CDS | 45.0% | |
| AACTCCCCCTTAACAACCTT+TGG | - | chr3.1:61713513-61713532 | None:intergenic | 45.0% | |
| AAGAGAAGTAGATGCAGCAG+TGG | + | chr3.1:61712271-61712290 | MS.gene98270:CDS | 45.0% | |
| ACATCAACCCCCATATGCAT+TGG | - | chr3.1:61712310-61712329 | None:intergenic | 45.0% | |
| ACTTGACGTGCCAATGCATA+TGG | + | chr3.1:61712297-61712316 | MS.gene98270:CDS | 45.0% | |
| AGATGAAACTGTGAGCTCTG+TGG | + | chr3.1:61715100-61715119 | MS.gene98270:CDS | 45.0% | |
| AGCCACTAATATAGGGCTCT+AGG | + | chr3.1:61714070-61714089 | MS.gene98270:intron | 45.0% | |
| AGCCTAGAGCCCTATATTAG+TGG | - | chr3.1:61714075-61714094 | None:intergenic | 45.0% | |
| ATGGATGCACGAATGCACAT+TGG | + | chr3.1:61714177-61714196 | MS.gene98270:CDS | 45.0% | |
| ATGGATGCAGCCACAAACAA+TGG | - | chr3.1:61713429-61713448 | None:intergenic | 45.0% | |
| CTTGACGTGCCAATGCATAT+GGG | + | chr3.1:61712298-61712317 | MS.gene98270:CDS | 45.0% | |
| GACGCACCAATGTGAATTTG+AGG | - | chr3.1:61713245-61713264 | None:intergenic | 45.0% | |
| TACCAAAACTCTCGGTGACT+TGG | - | chr3.1:61712567-61712586 | None:intergenic | 45.0% | |
| TACCGAAGCCTTCAGAAAAC+TGG | - | chr3.1:61713976-61713995 | None:intergenic | 45.0% | |
| TACCTAAGCCTTCAGCAAAC+AGG | - | chr3.1:61712871-61712890 | None:intergenic | 45.0% | |
| TCGGCTCACAAGCTTGAAAA+AGG | + | chr3.1:61712142-61712161 | MS.gene98270:CDS | 45.0% | |
| TGTTACAGCCCATCTCTTAC+CGG | - | chr3.1:61712068-61712087 | None:intergenic | 45.0% | |
| TTGACGTGCCAATGCATATG+GGG | + | chr3.1:61712299-61712318 | MS.gene98270:CDS | 45.0% | |
| TTGTTTGTGGCTGCATCCAT+TGG | + | chr3.1:61713429-61713448 | MS.gene98270:intron | 45.0% | |
| ! | AAGAGAATCAAGTGGCTCTG+TGG | - | chr3.1:61713279-61713298 | None:intergenic | 45.0% |
| ! | GATCTGTTTGCTGAAGGCTT+AGG | + | chr3.1:61713080-61713099 | MS.gene98270:CDS | 45.0% |
| ! | GTCACATTGGTGCGTCTTTT+TGG | + | chr3.1:61714812-61714831 | MS.gene98270:intron | 45.0% |
| !! | ATATAGGGCTCTAGGCTTCT+TGG | + | chr3.1:61714078-61714097 | MS.gene98270:intron | 45.0% |
| !! | ATGCATATGGGGGTTGATGT+AGG | + | chr3.1:61712310-61712329 | MS.gene98270:CDS | 45.0% |
| !! | CATTTTAGGAAGTGATCCGG+CGG | + | chr3.1:61713181-61713200 | MS.gene98270:intron | 45.0% |
| !! | TGCCAGTTTTCTGAAGGCTT+CGG | + | chr3.1:61713971-61713990 | MS.gene98270:CDS | 45.0% |
| !! | TTGAAGAAGTGTTGGGCTCA+GGG | + | chr3.1:61712479-61712498 | MS.gene98270:CDS | 45.0% |
| !! | TTTGAAGAAGTGTTGGGCTC+AGG | + | chr3.1:61712478-61712497 | MS.gene98270:CDS | 45.0% |
| !!! | CAAGAGTGCCAGTTTTCTGA+AGG | + | chr3.1:61713965-61713984 | MS.gene98270:CDS | 45.0% |
| AGAGCGGCCAAAGGTTGTTA+AGG | + | chr3.1:61713503-61713522 | MS.gene98270:intron | 50.0% | |
| AGCGGCCAAAGGTTGTTAAG+GGG | + | chr3.1:61713505-61713524 | MS.gene98270:CDS | 50.0% | |
| CAACCTCAACCGGTAAGAGA+TGG | + | chr3.1:61712056-61712075 | MS.gene98270:CDS | 50.0% | |
| CTCGAGGATTCAACCTCAAC+CGG | + | chr3.1:61712046-61712065 | MS.gene98270:CDS | 50.0% | |
| GAACACCTCACAGGAGATAG+TGG | - | chr3.1:61714557-61714576 | None:intergenic | 50.0% | |
| GAGCGGCCAAAGGTTGTTAA+GGG | + | chr3.1:61713504-61713523 | MS.gene98270:intron | 50.0% | |
| GCACTCCTGAACTTCTCCAT+TGG | - | chr3.1:61713571-61713590 | None:intergenic | 50.0% | |
| TACCTAAGCTCATCGCAACC+TGG | - | chr3.1:61713593-61713612 | None:intergenic | 50.0% | |
| TCTTCAGATATCGCCCCTGT+AGG | - | chr3.1:61714132-61714151 | None:intergenic | 50.0% | |
| TGACGTGCCAATGCATATGG+GGG | + | chr3.1:61712300-61712319 | MS.gene98270:CDS | 50.0% | |
| TGCACGAATGCACATTGGTG+AGG | + | chr3.1:61714182-61714201 | MS.gene98270:intron | 50.0% | |
| TTCAATTGCAGAGCGGCCAA+AGG | + | chr3.1:61713494-61713513 | MS.gene98270:intron | 50.0% | |
| ! | AGCCAAGTCACCGAGAGTTT+TGG | + | chr3.1:61712562-61712581 | MS.gene98270:CDS | 50.0% |
| ! | GACCTGTTTGCTGAAGGCTT+AGG | + | chr3.1:61712866-61712885 | MS.gene98270:CDS | 50.0% |
| !! | CATATGGGGGTTGATGTAGG+TGG | + | chr3.1:61712313-61712332 | MS.gene98270:CDS | 50.0% |
| !! | TGAAGAAGTGTTGGGCTCAG+GGG | + | chr3.1:61712480-61712499 | MS.gene98270:CDS | 50.0% |
| GCGGCCAAAGGTTGTTAAGG+GGG | + | chr3.1:61713506-61713525 | MS.gene98270:CDS | 55.0% | |
| TGCAGCCACTATCTCCTGTG+AGG | + | chr3.1:61714549-61714568 | MS.gene98270:CDS | 55.0% | |
| TGCCAGGTTGCGATGAGCTT+AGG | + | chr3.1:61713588-61713607 | MS.gene98270:CDS | 55.0% | |
| ! | AGCCCATCTCTTACCGGTTG+AGG | - | chr3.1:61712062-61712081 | None:intergenic | 55.0% |
| !! | TGGAGAAGTTCAGGAGTGCC+AGG | + | chr3.1:61713572-61713591 | MS.gene98270:CDS | 55.0% |
| TTGCACCTCTCTTCAGCCGC+CGG | - | chr3.1:61713200-61713219 | None:intergenic | 60.0% | |
| GTGATCCGGCGGCTGAAGAG+AGG | + | chr3.1:61713192-61713211 | MS.gene98270:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 61712016 | 61715145 | 61712016 | ID=MS.gene98270 |
| chr3.1 | mRNA | 61712016 | 61715145 | 61712016 | ID=MS.gene98270.t1;Parent=MS.gene98270 |
| chr3.1 | exon | 61712016 | 61712583 | 61712016 | ID=MS.gene98270.t1.exon1;Parent=MS.gene98270.t1 |
| chr3.1 | CDS | 61712016 | 61712583 | 61712016 | ID=cds.MS.gene98270.t1;Parent=MS.gene98270.t1 |
| chr3.1 | exon | 61712762 | 61712887 | 61712762 | ID=MS.gene98270.t1.exon2;Parent=MS.gene98270.t1 |
| chr3.1 | CDS | 61712762 | 61712887 | 61712762 | ID=cds.MS.gene98270.t1;Parent=MS.gene98270.t1 |
| chr3.1 | exon | 61712976 | 61713101 | 61712976 | ID=MS.gene98270.t1.exon3;Parent=MS.gene98270.t1 |
| chr3.1 | CDS | 61712976 | 61713101 | 61712976 | ID=cds.MS.gene98270.t1;Parent=MS.gene98270.t1 |
| chr3.1 | exon | 61713189 | 61713257 | 61713189 | ID=MS.gene98270.t1.exon4;Parent=MS.gene98270.t1 |
| chr3.1 | CDS | 61713189 | 61713257 | 61713189 | ID=cds.MS.gene98270.t1;Parent=MS.gene98270.t1 |
| chr3.1 | exon | 61713505 | 61713609 | 61713505 | ID=MS.gene98270.t1.exon5;Parent=MS.gene98270.t1 |
| chr3.1 | CDS | 61713505 | 61713609 | 61713505 | ID=cds.MS.gene98270.t1;Parent=MS.gene98270.t1 |
| chr3.1 | exon | 61713789 | 61713992 | 61713789 | ID=MS.gene98270.t1.exon6;Parent=MS.gene98270.t1 |
| chr3.1 | CDS | 61713789 | 61713992 | 61713789 | ID=cds.MS.gene98270.t1;Parent=MS.gene98270.t1 |
| chr3.1 | exon | 61714136 | 61714198 | 61714136 | ID=MS.gene98270.t1.exon7;Parent=MS.gene98270.t1 |
| chr3.1 | CDS | 61714136 | 61714198 | 61714136 | ID=cds.MS.gene98270.t1;Parent=MS.gene98270.t1 |
| chr3.1 | exon | 61714311 | 61714382 | 61714311 | ID=MS.gene98270.t1.exon8;Parent=MS.gene98270.t1 |
| chr3.1 | CDS | 61714311 | 61714382 | 61714311 | ID=cds.MS.gene98270.t1;Parent=MS.gene98270.t1 |
| chr3.1 | exon | 61714485 | 61714570 | 61714485 | ID=MS.gene98270.t1.exon9;Parent=MS.gene98270.t1 |
| chr3.1 | CDS | 61714485 | 61714570 | 61714485 | ID=cds.MS.gene98270.t1;Parent=MS.gene98270.t1 |
| chr3.1 | exon | 61714763 | 61714820 | 61714763 | ID=MS.gene98270.t1.exon10;Parent=MS.gene98270.t1 |
| chr3.1 | CDS | 61714763 | 61714820 | 61714763 | ID=cds.MS.gene98270.t1;Parent=MS.gene98270.t1 |
| chr3.1 | exon | 61714909 | 61714980 | 61714909 | ID=MS.gene98270.t1.exon11;Parent=MS.gene98270.t1 |
| chr3.1 | CDS | 61714909 | 61714980 | 61714909 | ID=cds.MS.gene98270.t1;Parent=MS.gene98270.t1 |
| chr3.1 | exon | 61715063 | 61715145 | 61715063 | ID=MS.gene98270.t1.exon12;Parent=MS.gene98270.t1 |
| chr3.1 | CDS | 61715063 | 61715145 | 61715063 | ID=cds.MS.gene98270.t1;Parent=MS.gene98270.t1 |
| Gene Sequence |
| Protein sequence |
