Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98407.t1 | AES65705.1 | 76.5 | 81 | 19 | 0 | 10 | 90 | 187 | 267 | 3.10E-10 | 74.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98407.t1 | G7IST9 | 76.5 | 81 | 19 | 0 | 10 | 90 | 187 | 267 | 2.3e-10 | 74.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene98407.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98407.t1 | MTR_2g045670 | 87.838 | 74 | 9 | 0 | 10 | 83 | 187 | 260 | 1.75e-37 | 128 |
MS.gene98407.t1 | MTR_2g045700 | 71.605 | 81 | 23 | 0 | 10 | 90 | 177 | 257 | 3.99e-28 | 103 |
MS.gene98407.t1 | MTR_2g045630 | 71.605 | 81 | 19 | 1 | 10 | 90 | 188 | 264 | 1.72e-27 | 102 |
MS.gene98407.t1 | MTR_1g034500 | 66.667 | 81 | 27 | 0 | 10 | 90 | 213 | 293 | 3.26e-26 | 99.4 |
MS.gene98407.t1 | MTR_8g077950 | 43.836 | 73 | 39 | 1 | 15 | 85 | 252 | 324 | 5.77e-11 | 58.2 |
MS.gene98407.t1 | MTR_8g077950 | 43.836 | 73 | 39 | 1 | 15 | 85 | 254 | 326 | 6.08e-11 | 58.2 |
MS.gene98407.t1 | MTR_8g077950 | 43.836 | 73 | 39 | 1 | 15 | 85 | 194 | 266 | 8.36e-11 | 57.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98407.t1 | AT2G35530 | 40.000 | 75 | 44 | 1 | 15 | 88 | 300 | 374 | 7.13e-13 | 63.9 |
Find 13 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACTCTTAAGGTTGAAAATT+CGG | 0.302604 | 2.4:-44989066 | MS.gene98407:CDS |
GCTCAGTGAGCGTTTGTGTT+AGG | 0.338250 | 2.4:+44989042 | None:intergenic |
TCAAGAGATAAACACTCTTA+AGG | 0.430729 | 2.4:-44989078 | MS.gene98407:CDS |
AAGATCAAAGATAAAGAAAC+AGG | 0.437513 | 2.4:-44989433 | MS.gene98407:intron |
CAACACCACTGTGCAGTACA+TGG | 0.491134 | 2.4:-44987311 | MS.gene98407:CDS |
CAATGAAAACGATTCTATTG+AGG | 0.546332 | 2.4:-44988994 | MS.gene98407:intron |
TCGAAGCAGATTACTGAGGA+TGG | 0.562030 | 2.4:-44990181 | MS.gene98407:intron |
ACGAATAAGAAACAAGGGAA+GGG | 0.573768 | 2.4:-44987280 | MS.gene98407:CDS |
TACGAATAAGAAACAAGGGA+AGG | 0.594849 | 2.4:-44987281 | MS.gene98407:CDS |
AATAATACGAATAAGAAACA+AGG | 0.635249 | 2.4:-44987286 | MS.gene98407:CDS |
ATAATACGAATAAGAAACAA+GGG | 0.660291 | 2.4:-44987285 | MS.gene98407:CDS |
TTTATCGAAGCAGATTACTG+AGG | 0.687115 | 2.4:-44990185 | MS.gene98407:CDS |
ATTATCCATGTACTGCACAG+TGG | 0.730812 | 2.4:+44987306 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATTAAAAAAATCAAAGT+AGG | + | chr2.4:44988244-44988263 | None:intergenic | 10.0% |
!! | TAATTAAAAAAATCAAAGTA+GGG | + | chr2.4:44988243-44988262 | None:intergenic | 10.0% |
!!! | CTATTGTTTTTTTAAATTTA+TGG | + | chr2.4:44989679-44989698 | None:intergenic | 10.0% |
!!! | GTTTTTTTTTTTTTTTGAAT+CGG | - | chr2.4:44988047-44988066 | MS.gene98407:intron | 10.0% |
!! | AAATGTAAAAAGAAAAAATG+TGG | - | chr2.4:44988186-44988205 | MS.gene98407:intron | 15.0% |
!! | AATGTAAAAAGAAAAAATGT+GGG | - | chr2.4:44988187-44988206 | MS.gene98407:intron | 15.0% |
!! | ATAAAATTGAACAAATAAGA+AGG | + | chr2.4:44988487-44988506 | None:intergenic | 15.0% |
!! | ATTATTGTTCAATTAGAAAA+AGG | - | chr2.4:44988548-44988567 | MS.gene98407:intron | 15.0% |
!! | TAAAATTGAACAAATAAGAA+GGG | + | chr2.4:44988486-44988505 | None:intergenic | 15.0% |
!! | TTGATATCTATATTACTAAA+AGG | - | chr2.4:44989034-44989053 | MS.gene98407:CDS | 15.0% |
!! | TTTGTTTATAAATTCTACTA+CGG | + | chr2.4:44987636-44987655 | None:intergenic | 15.0% |
!!! | ATGTTTGAAATTTTCTATTA+TGG | + | chr2.4:44989440-44989459 | None:intergenic | 15.0% |
!!! | GCTTTAAAGTATAATAAATA+TGG | - | chr2.4:44990055-44990074 | MS.gene98407:intron | 15.0% |
!!! | GTGATAAGATATTTTTTTTT+TGG | + | chr2.4:44989009-44989028 | None:intergenic | 15.0% |
!!! | TGGTAAAATTTTAACATAAA+AGG | + | chr2.4:44987833-44987852 | None:intergenic | 15.0% |
!!! | TTTTATTTTTTAAGGAAGTT+TGG | + | chr2.4:44989488-44989507 | None:intergenic | 15.0% |
!! | AATAATACGAATAAGAAACA+AGG | - | chr2.4:44990152-44990171 | MS.gene98407:intron | 20.0% |
!! | AGGGAAAAAAAAAACTATTT+GGG | + | chr2.4:44988224-44988243 | None:intergenic | 20.0% |
!! | ATAATACGAATAAGAAACAA+GGG | - | chr2.4:44990153-44990172 | MS.gene98407:intron | 20.0% |
!! | ATGTAAAAAGAAAAAATGTG+GGG | - | chr2.4:44988188-44988207 | MS.gene98407:intron | 20.0% |
!! | GAATATGATTATAACTATAG+TGG | + | chr2.4:44987698-44987717 | None:intergenic | 20.0% |
!! | TAGGGAAAAAAAAAACTATT+TGG | + | chr2.4:44988225-44988244 | None:intergenic | 20.0% |
!! | TGATGCTAAACTAAAAAATA+TGG | - | chr2.4:44987499-44987518 | MS.gene98407:intron | 20.0% |
!! | TGCATGAAGAAAAAAAAAAA+CGG | - | chr2.4:44990182-44990201 | MS.gene98407:CDS | 20.0% |
!!! | ATAATTTTTTTTATTTGGGC+TGG | - | chr2.4:44988856-44988875 | MS.gene98407:intron | 20.0% |
!!! | ATACCTTTAAAAGATTGAAT+AGG | + | chr2.4:44989417-44989436 | None:intergenic | 20.0% |
!!! | ATTCCTATTCAATCTTTTAA+AGG | - | chr2.4:44989411-44989430 | MS.gene98407:intron | 20.0% |
!!! | TAATATTTTTCCCTTTTCTA+GGG | + | chr2.4:44989589-44989608 | None:intergenic | 20.0% |
!!! | TACTAATTTAAAGTGTGATT+TGG | - | chr2.4:44988660-44988679 | MS.gene98407:intron | 20.0% |
!!! | TTAAAGCTTTATTATAGACT+TGG | + | chr2.4:44990042-44990061 | None:intergenic | 20.0% |
! | AAAGTCACAATTGAATAGAA+AGG | + | chr2.4:44989889-44989908 | None:intergenic | 25.0% |
! | AAGAAAGTTGGATTGATAAA+TGG | + | chr2.4:44987856-44987875 | None:intergenic | 25.0% |
! | AAGATCAAAGATAAAGAAAC+AGG | - | chr2.4:44988005-44988024 | MS.gene98407:intron | 25.0% |
! | AATATTGATACATTGTCATG+TGG | - | chr2.4:44989144-44989163 | MS.gene98407:intron | 25.0% |
! | ACAAATATCAGAAAACAAGA+TGG | + | chr2.4:44988574-44988593 | None:intergenic | 25.0% |
! | ATAAATTCTACTACGGTATA+GGG | + | chr2.4:44987629-44987648 | None:intergenic | 25.0% |
! | ATTGATTAACAACTTAAAGC+AGG | + | chr2.4:44988896-44988915 | None:intergenic | 25.0% |
! | CAAAAGAAATGCAACTAAAT+AGG | + | chr2.4:44987925-44987944 | None:intergenic | 25.0% |
! | CTTTAAATTAGTAGCAATGT+TGG | + | chr2.4:44988653-44988672 | None:intergenic | 25.0% |
! | TATAAATTCTACTACGGTAT+AGG | + | chr2.4:44987630-44987649 | None:intergenic | 25.0% |
! | TTGATTAACAACTTAAAGCA+GGG | + | chr2.4:44988895-44988914 | None:intergenic | 25.0% |
!! | AAAAGTGGTAATAATTTGCA+TGG | - | chr2.4:44989263-44989282 | MS.gene98407:intron | 25.0% |
!! | AGAAACAGTTTAAAATAGGA+AGG | - | chr2.4:44988821-44988840 | MS.gene98407:intron | 25.0% |
!! | ATAAGTTGAAAAACTAACAC+AGG | + | chr2.4:44987720-44987739 | None:intergenic | 25.0% |
!! | ATTTGTTAGCAGAGATATAT+AGG | + | chr2.4:44989127-44989146 | None:intergenic | 25.0% |
!! | CTAATATTTTTCCCTTTTCT+AGG | + | chr2.4:44989590-44989609 | None:intergenic | 25.0% |
!! | TAATTTAAAGTGTGATTTGG+TGG | - | chr2.4:44988663-44988682 | MS.gene98407:intron | 25.0% |
!! | TTCTTTTGCATGAAAAAAAG+TGG | - | chr2.4:44989248-44989267 | MS.gene98407:intron | 25.0% |
!!! | TATGATATGCTTAGCTTTTT+TGG | - | chr2.4:44987672-44987691 | MS.gene98407:intron | 25.0% |
!!! | TCCTATTTTAAACTGTTTCT+TGG | + | chr2.4:44988821-44988840 | None:intergenic | 25.0% |
AAAAACACCTCAGAAAACAA+AGG | - | chr2.4:44989722-44989741 | MS.gene98407:intron | 30.0% | |
AAAGTTGGATTGATAAATGG+TGG | + | chr2.4:44987853-44987872 | None:intergenic | 30.0% | |
AGTGACCTTATCTATGTATA+TGG | + | chr2.4:44987546-44987565 | None:intergenic | 30.0% | |
ATAAAAGGCTCATATATGAC+AGG | + | chr2.4:44987818-44987837 | None:intergenic | 30.0% | |
ATCATTGTGCTAAACATTCT+AGG | - | chr2.4:44990103-44990122 | MS.gene98407:intron | 30.0% | |
ATGGCATATGCTATATGAAT+TGG | - | chr2.4:44990074-44990093 | MS.gene98407:intron | 30.0% | |
ATTGTGACTTTCTATCCTTT+AGG | - | chr2.4:44989898-44989917 | MS.gene98407:intron | 30.0% | |
CAATGAAAACGATTCTATTG+AGG | - | chr2.4:44988444-44988463 | MS.gene98407:intron | 30.0% | |
CACTCTTAAGGTTGAAAATT+CGG | - | chr2.4:44988372-44988391 | MS.gene98407:intron | 30.0% | |
CTCTCAAACAAATATGTGAT+AGG | - | chr2.4:44987576-44987595 | MS.gene98407:intron | 30.0% | |
CTTCTTGCAAGTAATTGATA+TGG | - | chr2.4:44989949-44989968 | MS.gene98407:intron | 30.0% | |
GAAATGCAACTAAATAGGTT+AGG | + | chr2.4:44987920-44987939 | None:intergenic | 30.0% | |
GATGTCCATATACATAGATA+AGG | - | chr2.4:44987538-44987557 | MS.gene98407:intron | 30.0% | |
TAAAATGCAGTTCATGTGTT+TGG | + | chr2.4:44987371-44987390 | None:intergenic | 30.0% | |
TCAAGAGATAAACACTCTTA+AGG | - | chr2.4:44988360-44988379 | MS.gene98407:intron | 30.0% | |
TGGACGAAATAAGATACAAA+TGG | - | chr2.4:44988109-44988128 | MS.gene98407:intron | 30.0% | |
TTGCAAGTAATTGATATGGA+AGG | - | chr2.4:44989953-44989972 | MS.gene98407:intron | 30.0% | |
TTGTGACTTTCTATCCTTTA+GGG | - | chr2.4:44989899-44989918 | MS.gene98407:intron | 30.0% | |
! | AATAGATCTGCAATTGATTC+TGG | + | chr2.4:44988721-44988740 | None:intergenic | 30.0% |
! | CAATTGTATTTTTCCCAACA+AGG | + | chr2.4:44989331-44989350 | None:intergenic | 30.0% |
! | CACCATAATAGTTTTTGATG+AGG | + | chr2.4:44989227-44989246 | None:intergenic | 30.0% |
! | CTCAATAGAATCGTTTTCAT+TGG | + | chr2.4:44988446-44988465 | None:intergenic | 30.0% |
! | GCCAAGAAACAGTTTAAAAT+AGG | - | chr2.4:44988817-44988836 | MS.gene98407:intron | 30.0% |
! | TAGATAAGGTCACTTTAACA+TGG | - | chr2.4:44987552-44987571 | MS.gene98407:intron | 30.0% |
! | TCCTATCATAAACTGTTTCT+TGG | + | chr2.4:44988780-44988799 | None:intergenic | 30.0% |
! | TTTGTTGTAGAAAATCCATC+TGG | - | chr2.4:44987416-44987435 | MS.gene98407:intron | 30.0% |
!! | CTGCAAGTTTGTTGAAATTA+GGG | + | chr2.4:44989308-44989327 | None:intergenic | 30.0% |
!! | TGCAAGTTTGTTGAAATTAG+GGG | + | chr2.4:44989307-44989326 | None:intergenic | 30.0% |
!!! | ACTATTTCCTTTGTTTTCTG+AGG | + | chr2.4:44989732-44989751 | None:intergenic | 30.0% |
AAAGAAAAAGACTGTCGAAC+AGG | - | chr2.4:44987971-44987990 | MS.gene98407:intron | 35.0% | |
ACAAAGGAAATAGTGAGTTG+TGG | - | chr2.4:44989738-44989757 | MS.gene98407:intron | 35.0% | |
ACATTGTCATGTGGTGATAA+GGG | - | chr2.4:44989153-44989172 | MS.gene98407:intron | 35.0% | |
ACGAATAAGAAACAAGGGAA+GGG | - | chr2.4:44990158-44990177 | MS.gene98407:intron | 35.0% | |
AGCAAATGAGTTTACCCTAA+AGG | + | chr2.4:44989916-44989935 | None:intergenic | 35.0% | |
ATGGTTATCGTGCACTATTT+AGG | + | chr2.4:44989660-44989679 | None:intergenic | 35.0% | |
CAAAGGAAATAGTGAGTTGT+GGG | - | chr2.4:44989739-44989758 | MS.gene98407:intron | 35.0% | |
CTTGGCAACATTAAGAAAGT+TGG | + | chr2.4:44987868-44987887 | None:intergenic | 35.0% | |
GAGTGTGTGCTTATATTTAG+TGG | + | chr2.4:44989383-44989402 | None:intergenic | 35.0% | |
GCAAGAAATGCAACTAAACT+TGG | + | chr2.4:44987886-44987905 | None:intergenic | 35.0% | |
GCCAAGAAACAGTTTATGAT+AGG | - | chr2.4:44988776-44988795 | MS.gene98407:intron | 35.0% | |
GGCCTCATCAAAAACTATTA+TGG | - | chr2.4:44989222-44989241 | MS.gene98407:intron | 35.0% | |
GTGCTTATATTTAGTGGTCT+TGG | + | chr2.4:44989377-44989396 | None:intergenic | 35.0% | |
TACATTGTCATGTGGTGATA+AGG | - | chr2.4:44989152-44989171 | MS.gene98407:intron | 35.0% | |
TACCTTCAAACCCTAGAAAA+GGG | - | chr2.4:44989576-44989595 | MS.gene98407:intron | 35.0% | |
TACGAATAAGAAACAAGGGA+AGG | - | chr2.4:44990157-44990176 | MS.gene98407:intron | 35.0% | |
TGGTTATCGTGCACTATTTA+GGG | + | chr2.4:44989659-44989678 | None:intergenic | 35.0% | |
TTACCTTCAAACCCTAGAAA+AGG | - | chr2.4:44989575-44989594 | MS.gene98407:intron | 35.0% | |
TTTATCGAAGCAGATTACTG+AGG | - | chr2.4:44987253-44987272 | MS.gene98407:CDS | 35.0% | |
! | AAAGTTTCAAGTAGGCTTCA+TGG | + | chr2.4:44988746-44988765 | None:intergenic | 35.0% |
! | AAGTTTCAAGTAGGCTTCAT+GGG | + | chr2.4:44988745-44988764 | None:intergenic | 35.0% |
! | AGCCTACTTGAAACTTTTTG+TGG | - | chr2.4:44988749-44988768 | MS.gene98407:intron | 35.0% |
! | CACATGAACTGCATTTTATG+TGG | - | chr2.4:44987373-44987392 | MS.gene98407:intron | 35.0% |
! | CACCACAAAAAGTTTCAAGT+AGG | + | chr2.4:44988754-44988773 | None:intergenic | 35.0% |
! | CTACTTGAAACTTTTTGTGG+TGG | - | chr2.4:44988752-44988771 | MS.gene98407:intron | 35.0% |
! | GTTTGTTGAAATTAGGGGAA+AGG | + | chr2.4:44989302-44989321 | None:intergenic | 35.0% |
! | TAGGCAGTGTTGTTAAATAG+CGG | - | chr2.4:44987595-44987614 | MS.gene98407:intron | 35.0% |
! | TGCGACTATATCTCTGAAAA+AGG | + | chr2.4:44989984-44990003 | None:intergenic | 35.0% |
! | TGGTAATAATTTGCATGGTG+AGG | - | chr2.4:44989268-44989287 | MS.gene98407:intron | 35.0% |
!! | AACCAAAGCATTGTTGGTTA+TGG | + | chr2.4:44988155-44988174 | None:intergenic | 35.0% |
!! | ATATGCAACCAAAGCATTGT+TGG | + | chr2.4:44988161-44988180 | None:intergenic | 35.0% |
!! | GCTGCAAGTTTGTTGAAATT+AGG | + | chr2.4:44989309-44989328 | None:intergenic | 35.0% |
!! | TAACTCGCTATAACTTGCTT+AGG | + | chr2.4:44989636-44989655 | None:intergenic | 35.0% |
!! | TAACTTGCTTAGGTAAGCAA+AGG | + | chr2.4:44989626-44989645 | None:intergenic | 35.0% |
!! | TTTAAAGTGTGATTTGGTGG+TGG | - | chr2.4:44988666-44988685 | MS.gene98407:intron | 35.0% |
AACGGGGAAAAGTTAGTTGT+GGG | - | chr2.4:44989826-44989845 | MS.gene98407:intron | 40.0% | |
AGGTACATACGACAATGCTT+TGG | - | chr2.4:44988025-44988044 | MS.gene98407:intron | 40.0% | |
ATATAGTCGCATATCGCTGT+AGG | - | chr2.4:44989993-44990012 | MS.gene98407:intron | 40.0% | |
ATTATCCATGTACTGCACAG+TGG | + | chr2.4:44990135-44990154 | None:intergenic | 40.0% | |
CACCATAACCAACAATGCTT+TGG | - | chr2.4:44988150-44988169 | MS.gene98407:intron | 40.0% | |
CTTGGATTCACTCTTGAACA+GGG | + | chr2.4:44989359-44989378 | None:intergenic | 40.0% | |
TAACGGGGAAAAGTTAGTTG+TGG | - | chr2.4:44989825-44989844 | MS.gene98407:intron | 40.0% | |
TATGGTGTACCGTCTATATG+CGG | + | chr2.4:44988137-44988156 | None:intergenic | 40.0% | |
TCTTGGATTCACTCTTGAAC+AGG | + | chr2.4:44989360-44989379 | None:intergenic | 40.0% | |
TGTAGAAAATCCATCTGGAC+TGG | - | chr2.4:44987421-44987440 | MS.gene98407:intron | 40.0% | |
TTACTACAGTGCTCATCTCT+TGG | - | chr2.4:44989527-44989546 | MS.gene98407:intron | 40.0% | |
! | CTTTTCCCCGTTAATTGTCA+AGG | + | chr2.4:44989818-44989837 | None:intergenic | 40.0% |
! | GATGAGCACTGTAGTAAGTT+TGG | + | chr2.4:44989524-44989543 | None:intergenic | 40.0% |
! | GTCTATCAGATGAGTTTGCT+AGG | - | chr2.4:44989765-44989784 | MS.gene98407:intron | 40.0% |
! | GTTGCATTTCTTTTGACAGC+AGG | - | chr2.4:44987930-44987949 | MS.gene98407:intron | 40.0% |
! | TAAGAGCCAGTTAGGTTGTA+TGG | - | chr2.4:44988694-44988713 | MS.gene98407:intron | 40.0% |
!! | AACAAACTTGCAGCCTTGTT+GGG | - | chr2.4:44989315-44989334 | MS.gene98407:intron | 40.0% |
!!! | TTCCCTTTTCTAGGGTTTGA+AGG | + | chr2.4:44989581-44989600 | None:intergenic | 40.0% |
AAATTCTGTGCCAGTCCAGA+TGG | + | chr2.4:44987434-44987453 | None:intergenic | 45.0% | |
AAGCCGCCTTGACAATTAAC+GGG | - | chr2.4:44989809-44989828 | MS.gene98407:intron | 45.0% | |
CAAGCCGCCTTGACAATTAA+CGG | - | chr2.4:44989808-44989827 | MS.gene98407:intron | 45.0% | |
GAATTTAGGGACAGTCGTCA+AGG | - | chr2.4:44987448-44987467 | MS.gene98407:intron | 45.0% | |
TACCTTTGTGCTTTGACTGC+AGG | - | chr2.4:44989201-44989220 | MS.gene98407:intron | 45.0% | |
TCCATACCTTGCATCTTGCA+GGG | + | chr2.4:44988093-44988112 | None:intergenic | 45.0% | |
TCGAAGCAGATTACTGAGGA+TGG | - | chr2.4:44987257-44987276 | MS.gene98407:CDS | 45.0% | |
TCTGGTCCATACAACCTAAC+TGG | + | chr2.4:44988703-44988722 | None:intergenic | 45.0% | |
TGGAACAGTAAGAGCCAGTT+AGG | - | chr2.4:44988686-44988705 | MS.gene98407:intron | 45.0% | |
TGGCTAACAGTCTTGCATCT+TGG | - | chr2.4:44987393-44987412 | MS.gene98407:intron | 45.0% | |
TTCCCCGTTAATTGTCAAGG+CGG | + | chr2.4:44989815-44989834 | None:intergenic | 45.0% | |
! | CAACAAACTTGCAGCCTTGT+TGG | - | chr2.4:44989314-44989333 | MS.gene98407:intron | 45.0% |
!! | CAAATGGTGCCGCATATAGA+CGG | - | chr2.4:44988125-44988144 | MS.gene98407:intron | 45.0% |
!! | CTGGACTGGCACAGAATTTA+GGG | - | chr2.4:44987435-44987454 | MS.gene98407:intron | 45.0% |
!! | TCTGGACTGGCACAGAATTT+AGG | - | chr2.4:44987434-44987453 | MS.gene98407:intron | 45.0% |
!!! | AATGTATAATTTTTTTTATT+TGG | - | chr2.4:44988851-44988870 | MS.gene98407:intron | 5.0% |
!!! | ATGTATAATTTTTTTTATTT+GGG | - | chr2.4:44988852-44988871 | MS.gene98407:intron | 5.0% |
!!! | TTTTAAATCATAATAAAATA+TGG | + | chr2.4:44987324-44987343 | None:intergenic | 5.0% |
!!! | TTTTTTACTTTTATTTTTTA+AGG | + | chr2.4:44989496-44989515 | None:intergenic | 5.0% |
AGCCGCCTTGACAATTAACG+GGG | - | chr2.4:44989810-44989829 | MS.gene98407:intron | 50.0% | |
CAACACCACTGTGCAGTACA+TGG | - | chr2.4:44990127-44990146 | MS.gene98407:intron | 50.0% | |
GCTCAGTGAGCGTTTGTGTT+AGG | + | chr2.4:44988399-44988418 | None:intergenic | 50.0% | |
GTCCATACCTTGCATCTTGC+AGG | + | chr2.4:44988094-44988113 | None:intergenic | 50.0% | |
TACCTTGCATCTTGCAGGGA+TGG | + | chr2.4:44988089-44988108 | None:intergenic | 50.0% | |
TCCCTGCAAGATGCAAGGTA+TGG | - | chr2.4:44988089-44988108 | MS.gene98407:intron | 50.0% | |
GGCCTGCAGTCAAAGCACAA+AGG | + | chr2.4:44989206-44989225 | None:intergenic | 55.0% | |
CGCCATCCCTGCAAGATGCA+AGG | - | chr2.4:44988084-44988103 | MS.gene98407:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 44987234 | 44990226 | 44987234 | ID=MS.gene98407 |
chr2.4 | mRNA | 44987234 | 44990226 | 44987234 | ID=MS.gene98407.t1;Parent=MS.gene98407 |
chr2.4 | exon | 44990182 | 44990226 | 44990182 | ID=MS.gene98407.t1.exon1;Parent=MS.gene98407.t1 |
chr2.4 | CDS | 44990182 | 44990226 | 44990182 | ID=cds.MS.gene98407.t1;Parent=MS.gene98407.t1 |
chr2.4 | exon | 44989434 | 44989511 | 44989434 | ID=MS.gene98407.t1.exon2;Parent=MS.gene98407.t1 |
chr2.4 | CDS | 44989434 | 44989511 | 44989434 | ID=cds.MS.gene98407.t1;Parent=MS.gene98407.t1 |
chr2.4 | exon | 44988995 | 44989120 | 44988995 | ID=MS.gene98407.t1.exon3;Parent=MS.gene98407.t1 |
chr2.4 | CDS | 44988995 | 44989120 | 44988995 | ID=cds.MS.gene98407.t1;Parent=MS.gene98407.t1 |
chr2.4 | exon | 44987234 | 44987335 | 44987234 | ID=MS.gene98407.t1.exon4;Parent=MS.gene98407.t1 |
chr2.4 | CDS | 44987234 | 44987335 | 44987234 | ID=cds.MS.gene98407.t1;Parent=MS.gene98407.t1 |
Gene Sequence |
Protein sequence |