AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98408

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98408.t1 MTR_2g045700 79.636 275 32 4 23 277 1 271 4.87e-150 420
MS.gene98408.t1 MTR_2g045670 70.632 269 72 3 16 277 13 281 8.53e-127 362
MS.gene98408.t1 MTR_2g045630 72.083 240 49 3 51 276 42 277 3.66e-113 327
MS.gene98408.t1 MTR_1g034500 60.194 309 67 8 23 277 1 307 6.93e-111 322
MS.gene98408.t1 MTR_8g077950 46.250 80 43 0 192 271 258 337 6.58e-18 82.4
MS.gene98408.t1 MTR_8g077950 46.250 80 43 0 192 271 260 339 7.18e-18 82.4
MS.gene98408.t1 MTR_8g077950 46.250 80 43 0 192 271 200 279 8.26e-18 81.6
MS.gene98408.t1 MTR_5g028850 39.583 96 56 2 170 264 284 378 4.35e-13 68.9
MS.gene98408.t1 MTR_5g028850 39.583 96 56 2 170 264 286 380 4.41e-13 68.9
MS.gene98408.t1 MTR_8g070820 38.462 91 54 2 170 259 285 374 9.26e-12 65.1
MS.gene98408.t1 MTR_8g070820 35.870 92 59 0 168 259 257 348 9.27e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98408.t1 AT4G36730 45.000 80 44 0 192 271 220 299 1.20e-16 79.0
MS.gene98408.t1 AT4G36730 45.000 80 44 0 192 271 222 301 1.41e-16 78.6
MS.gene98408.t1 AT2G35530 41.558 77 44 1 184 259 296 372 2.45e-13 69.7

Find 53 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGGGCTGGGTCAGAATT+TGG 0.147766 2.4:+45018559 MS.gene98408:CDS
GCAAATAATTTGTTGAAATC+TGG 0.194573 2.4:-45017769 None:intergenic
CACAAGTTTCTCGAGCTTAA+TGG 0.203537 2.4:+45017203 MS.gene98408:CDS
TCTGGGCTGGGTCAGAATTT+GGG 0.213477 2.4:+45018560 MS.gene98408:CDS
CATTGAAGTAGTGCAATATT+TGG 0.230581 2.4:-45017388 None:intergenic
CAGAGATCTAACATGATTAT+TGG 0.278706 2.4:+45018421 MS.gene98408:CDS
AAACGCTCGCTGAGATTTCT+AGG 0.285624 2.4:+45019294 MS.gene98408:CDS
GTTAGATGTTTATCAATTAC+TGG 0.293982 2.4:-45017085 None:intergenic
CTCTGCTACATGAGGATTAT+AGG 0.310651 2.4:-45017440 None:intergenic
TCTCAGCGAGCGTTTGTGTT+AGG 0.317910 2.4:-45019286 None:intergenic
CTTCTGCATCAAAACATGAT+AGG 0.328673 2.4:+45017854 MS.gene98408:CDS
AAATAAGAAAAGAACGAAAA+AGG 0.341051 2.4:+45019071 MS.gene98408:CDS
TTCTTTGTAGAAAATCCATC+TGG 0.342852 2.4:+45018542 MS.gene98408:intron
CAAATAATTTGTTGAAATCT+GGG 0.364865 2.4:-45017768 None:intergenic
GAAGAGCTAGTTAAAGAGTA+TGG 0.380462 2.4:+45019626 MS.gene98408:CDS
AATAGATCTGCAACCAATTC+TGG 0.383766 2.4:-45019650 None:intergenic
TCTTGATGCTCAACTAAAAC+TGG 0.396539 2.4:+45018616 MS.gene98408:CDS
GATCTCTGCTTCATACTTGA+AGG 0.401624 2.4:-45018406 None:intergenic
TAAAGAGTATGGACCAGAAT+TGG 0.406806 2.4:+45019637 MS.gene98408:CDS
GAATTTGGGGACAGTTGTTA+AGG 0.407905 2.4:+45018574 MS.gene98408:CDS
TGGCAGACCTTACAATTTCT+CGG 0.413188 2.4:+45017248 MS.gene98408:CDS
CCAGTAATTAAACTTAAAAC+AGG 0.417895 2.4:-45017805 None:intergenic
AAGATCAAAGATAAGGAAAC+AGG 0.427615 2.4:+45019117 MS.gene98408:CDS
AAGAAAGAATCCAATCCATT+TGG 0.432707 2.4:+45017228 MS.gene98408:CDS
TCTGCGTACCATTTCTGAAA+AGG 0.446864 2.4:-45017740 None:intergenic
TGTAGAAAATCCATCTGGGC+TGG 0.452613 2.4:+45018547 MS.gene98408:intron
GTTTATCTGCGTAGGGCGGC+TGG 0.453312 2.4:+45017960 MS.gene98408:intron
CTGGGCTGGGTCAGAATTTG+GGG 0.465599 2.4:+45018561 MS.gene98408:CDS
GTAAGGTCTGCCAAATGGAT+TGG 0.472361 2.4:-45017238 None:intergenic
CAGCTAAAAGATCAAAGATA+AGG 0.486050 2.4:+45019110 MS.gene98408:CDS
ATCATCTGGTATTGTATGGT+TGG 0.499255 2.4:+45017061 None:intergenic
TTCTGCATCAAAACATGATA+GGG 0.507192 2.4:+45017855 MS.gene98408:CDS
TGAGATTTCTAGGAAATGTC+TGG 0.510510 2.4:+45019304 MS.gene98408:CDS
GTAGAAAATCCATCTGGGCT+GGG 0.520703 2.4:+45018548 MS.gene98408:intron
AAATTGTAAGGTCTGCCAAA+TGG 0.525325 2.4:-45017243 None:intergenic
AAATTCTGACCCAGCCCAGA+TGG 0.526322 2.4:-45018557 None:intergenic
AGCGGCGCCGAGAAATTGTA+AGG 0.545305 2.4:-45017255 None:intergenic
AGGATTATAGGAGAGCTCCA+TGG 0.551494 2.4:-45017428 None:intergenic
AATATTTATTCAGGAAGCTA+CGG 0.551586 2.4:+45017175 MS.gene98408:intron
TCTAACATGATTATTGGTGA+TGG 0.571130 2.4:+45018427 MS.gene98408:CDS
CGATGAAAACAATTCTATTG+TGG 0.572017 2.4:+45019334 MS.gene98408:CDS
TCTTTGTAGAAAATCCATCT+GGG 0.584157 2.4:+45018543 MS.gene98408:intron
GCATCAAAACATGATAGGGA+TGG 0.584620 2.4:+45017859 MS.gene98408:CDS
GGATTATAGGAGAGCTCCAT+GGG 0.587361 2.4:-45017427 None:intergenic
AGCGAGCGTTTGTGTTAGGA+CGG 0.595395 2.4:-45019282 None:intergenic
TATCTGCGTAGGGCGGCTGG+TGG 0.596299 2.4:+45017963 MS.gene98408:intron
CTATAATCCTCATGTAGCAG+AGG 0.606649 2.4:+45017441 MS.gene98408:CDS
CGACCCACCTCTGCTACATG+AGG 0.618025 2.4:-45017448 None:intergenic
GAACAAACTGTACCTCATTG+AGG 0.623003 2.4:-45017884 None:intergenic
TGATGCTGTACATGATCCCA+TGG 0.633950 2.4:+45017411 MS.gene98408:CDS
GGAAGTAAGAGATCAACAGA+TGG 0.635178 2.4:+45017984 MS.gene98408:CDS
CATGATTTACTGACATCTAG+CGG 0.690857 2.4:-45017273 None:intergenic
ATAGGGATGGAACCTCAATG+AGG 0.730132 2.4:+45017872 MS.gene98408:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATACTATAAAAGAAGA+TGG - chr2.4:45019473-45019492 None:intergenic 15.0%
!! TTAAAAGCAAATATTTATTC+AGG + chr2.4:45017166-45017185 MS.gene98408:intron 15.0%
!! TTTCACTATTAATTAAGAAA+AGG + chr2.4:45019447-45019466 MS.gene98408:intron 15.0%
!!! ATAAAAATGTTTATGCATTT+TGG + chr2.4:45017700-45017719 MS.gene98408:intron 15.0%
!!! TGGATTTTCATATTTTTTTA+GGG + chr2.4:45017570-45017589 MS.gene98408:intron 15.0%
!!! TTAAAATTTTTCTTTAGTAC+AGG + chr2.4:45018340-45018359 MS.gene98408:intron 15.0%
!! AAATAAGAAAAGAACGAAAA+AGG + chr2.4:45019071-45019090 MS.gene98408:CDS 20.0%
!! AAATTAACGTAATAAAAGAC+TGG - chr2.4:45018722-45018741 None:intergenic 20.0%
!! ACTTAATGTCAAAGAATATT+GGG - chr2.4:45017126-45017145 None:intergenic 20.0%
!! ATAATTGAACAAAGAAGAAA+GGG - chr2.4:45019375-45019394 None:intergenic 20.0%
!! TACTTAATGTCAAAGAATAT+TGG - chr2.4:45017127-45017146 None:intergenic 20.0%
!! TATAATTGAACAAAGAAGAA+AGG - chr2.4:45019376-45019395 None:intergenic 20.0%
!!! CAAATAATTTGTTGAAATCT+GGG - chr2.4:45017771-45017790 None:intergenic 20.0%
!!! GGATTTTCATATTTTTTTAG+GGG + chr2.4:45017571-45017590 MS.gene98408:intron 20.0%
!!! GTGGATTTTCATATTTTTTT+AGG + chr2.4:45017569-45017588 MS.gene98408:intron 20.0%
! AATATTTATTCAGGAAGCTA+CGG + chr2.4:45017175-45017194 MS.gene98408:intron 25.0%
! AATTATATTCTACTGCGATA+TGG - chr2.4:45018862-45018881 None:intergenic 25.0%
! CAAAAGAAATGCAACTAAAT+AGG - chr2.4:45019037-45019056 None:intergenic 25.0%
! CAATGAATATATCTACTGAA+AGG - chr2.4:45017477-45017496 None:intergenic 25.0%
! CCAGTAATTAAACTTAAAAC+AGG - chr2.4:45017808-45017827 None:intergenic 25.0%
! CTGAGTTAGTATATATTTAG+TGG + chr2.4:45017550-45017569 MS.gene98408:intron 25.0%
! GTTAGATGTTTATCAATTAC+TGG - chr2.4:45017088-45017107 None:intergenic 25.0%
! TAAAGAAAACTAGTTAAGAC+AGG - chr2.4:45017304-45017323 None:intergenic 25.0%
! TGACATTAAGTACATTATCT+CGG + chr2.4:45017135-45017154 MS.gene98408:intron 25.0%
!! CACAATAGAATTGTTTTCAT+CGG - chr2.4:45019336-45019355 None:intergenic 25.0%
!!! CCTGTTTTAAGTTTAATTAC+TGG + chr2.4:45017805-45017824 MS.gene98408:CDS 25.0%
!!! GCAAATAATTTGTTGAAATC+TGG - chr2.4:45017772-45017791 None:intergenic 25.0%
!!! TTTCATATTTTTTTAGGGGT+GGG + chr2.4:45017575-45017594 MS.gene98408:intron 25.0%
!!! TTTTCATATTTTTTTAGGGG+TGG + chr2.4:45017574-45017593 MS.gene98408:intron 25.0%
AAGAAAGAATCCAATCCATT+TGG + chr2.4:45017228-45017247 MS.gene98408:CDS 30.0%
AAGATCAAAGATAAGGAAAC+AGG + chr2.4:45019117-45019136 MS.gene98408:CDS 30.0%
AAGCTTAGCAACATTAAGAA+GGG - chr2.4:45018983-45019002 None:intergenic 30.0%
AGTTTAGCTAATTCACAGAA+AGG - chr2.4:45018689-45018708 None:intergenic 30.0%
ATCTAACAAAGAGAGATCAA+AGG - chr2.4:45019531-45019550 None:intergenic 30.0%
CAGAGATCTAACATGATTAT+TGG + chr2.4:45018421-45018440 MS.gene98408:CDS 30.0%
CAGCTAAAAGATCAAAGATA+AGG + chr2.4:45019110-45019129 MS.gene98408:CDS 30.0%
CATTGAAGTAGTGCAATATT+TGG - chr2.4:45017391-45017410 None:intergenic 30.0%
CGATGAAAACAATTCTATTG+TGG + chr2.4:45019334-45019353 MS.gene98408:CDS 30.0%
CTAATACAAAACACAAGAAC+TGG + chr2.4:45018488-45018507 MS.gene98408:intron 30.0%
CTCTCATACAAACATGTTAT+AGG + chr2.4:45018807-45018826 MS.gene98408:intron 30.0%
GTATTGAGATGTCTATGAAT+TGG + chr2.4:45019173-45019192 MS.gene98408:intron 30.0%
TAAGCTTAGCAACATTAAGA+AGG - chr2.4:45018984-45019003 None:intergenic 30.0%
TCTAACATGATTATTGGTGA+TGG + chr2.4:45018427-45018446 MS.gene98408:CDS 30.0%
TCTTTGTAGAAAATCCATCT+GGG + chr2.4:45018543-45018562 MS.gene98408:intron 30.0%
TTCTGCATCAAAACATGATA+GGG + chr2.4:45017855-45017874 MS.gene98408:CDS 30.0%
TTCTTTGTAGAAAATCCATC+TGG + chr2.4:45018542-45018561 MS.gene98408:intron 30.0%
! ACACATTCAATTAGAAGTGT+CGG + chr2.4:45018234-45018253 MS.gene98408:intron 30.0%
! GGATTTTCTACAAAGAAACA+AGG - chr2.4:45018539-45018558 None:intergenic 30.0%
! TTAGTTGCATTTCTTTTGAC+AGG + chr2.4:45019039-45019058 MS.gene98408:intron 30.0%
!! AATGTTTATGCATTTTGGTC+AGG + chr2.4:45017705-45017724 MS.gene98408:intron 30.0%
!! TATTGGTGATGGTAAGATTA+TGG + chr2.4:45018438-45018457 MS.gene98408:intron 30.0%
!!! TAGGAAGTGTTTTTAAGTAG+TGG + chr2.4:45018826-45018845 MS.gene98408:intron 30.0%
!!! TTCATATTTTTTTAGGGGTG+GGG + chr2.4:45017576-45017595 MS.gene98408:intron 30.0%
AAATTGTAAGGTCTGCCAAA+TGG - chr2.4:45017246-45017265 None:intergenic 35.0%
AATAGATCTGCAACCAATTC+TGG - chr2.4:45019653-45019672 None:intergenic 35.0%
ACAAAATCGTTTATCTGCGT+AGG + chr2.4:45017952-45017971 MS.gene98408:intron 35.0%
ACTCAAATTAGGAGCAATCT+TGG - chr2.4:45019586-45019605 None:intergenic 35.0%
CAAAATCGTTTATCTGCGTA+GGG + chr2.4:45017953-45017972 MS.gene98408:intron 35.0%
CACCAAATCACACTCAAATT+AGG - chr2.4:45019597-45019616 None:intergenic 35.0%
CATGATTTACTGACATCTAG+CGG - chr2.4:45017276-45017295 None:intergenic 35.0%
CTCCTAATTTGAGTGTGATT+TGG + chr2.4:45019592-45019611 MS.gene98408:intron 35.0%
CTTCTGCATCAAAACATGAT+AGG + chr2.4:45017854-45017873 MS.gene98408:CDS 35.0%
GAAGAGCTAGTTAAAGAGTA+TGG + chr2.4:45019626-45019645 MS.gene98408:CDS 35.0%
TCTTCACATTCTTTCTGACA+AGG - chr2.4:45019224-45019243 None:intergenic 35.0%
TCTTGATGCTCAACTAAAAC+TGG + chr2.4:45018616-45018635 MS.gene98408:CDS 35.0%
! AAACGATTTTGTTCACGCTT+TGG - chr2.4:45017944-45017963 None:intergenic 35.0%
! ACAGTTTGTTCTTGTTCTTC+TGG + chr2.4:45017896-45017915 MS.gene98408:intron 35.0%
! CTAATTTGAGTGTGATTTGG+TGG + chr2.4:45019595-45019614 MS.gene98408:intron 35.0%
! TAAAGAGTATGGACCAGAAT+TGG + chr2.4:45019637-45019656 MS.gene98408:CDS 35.0%
! TGAGATTTCTAGGAAATGTC+TGG + chr2.4:45019304-45019323 MS.gene98408:CDS 35.0%
!! TCAATTAGAAGTGTCGGTAT+CGG + chr2.4:45018240-45018259 MS.gene98408:intron 35.0%
!!! TATTGTTTTTGACACGCTAG+CGG + chr2.4:45018896-45018915 MS.gene98408:intron 35.0%
AACGAAAAAGGCTGTCAAAC+AGG + chr2.4:45019083-45019102 MS.gene98408:CDS 40.0%
CACAAGTTTCTCGAGCTTAA+TGG + chr2.4:45017203-45017222 MS.gene98408:CDS 40.0%
CTACAGAGGTTAGAACACTT+AGG + chr2.4:45018296-45018315 MS.gene98408:intron 40.0%
CTATAATCCTCATGTAGCAG+AGG + chr2.4:45017441-45017460 MS.gene98408:CDS 40.0%
CTCTGCTACATGAGGATTAT+AGG - chr2.4:45017443-45017462 None:intergenic 40.0%
CTGTTGAATTGCACCAATCA+TGG - chr2.4:45019154-45019173 None:intergenic 40.0%
GAAATTCTGCTCACAACAAC+AGG + chr2.4:45018782-45018801 MS.gene98408:intron 40.0%
GAACAAACTGTACCTCATTG+AGG - chr2.4:45017887-45017906 None:intergenic 40.0%
GAATTTGGGGACAGTTGTTA+AGG + chr2.4:45018574-45018593 MS.gene98408:CDS 40.0%
GATCTCTGCTTCATACTTGA+AGG - chr2.4:45018409-45018428 None:intergenic 40.0%
GCATCAAAACATGATAGGGA+TGG + chr2.4:45017859-45017878 MS.gene98408:CDS 40.0%
GGAAGTAAGAGATCAACAGA+TGG + chr2.4:45017984-45018003 MS.gene98408:CDS 40.0%
GTCTAATCACATCCTTTCCT+TGG + chr2.4:45018374-45018393 MS.gene98408:intron 40.0%
TACAGTAGCAATGATGCCTA+CGG + chr2.4:45018928-45018947 MS.gene98408:intron 40.0%
TACTACAGATGTTGACGTGT+CGG - chr2.4:45018135-45018154 None:intergenic 40.0%
TGGCAGACCTTACAATTTCT+CGG + chr2.4:45017248-45017267 MS.gene98408:CDS 40.0%
! ACACCTTCGTTTAGAAGTGT+CGG + chr2.4:45018271-45018290 MS.gene98408:intron 40.0%
! TCTGCGTACCATTTCTGAAA+AGG - chr2.4:45017743-45017762 None:intergenic 40.0%
! TTTTGATGCAGAAGACAGGT+TGG - chr2.4:45017848-45017867 None:intergenic 40.0%
!! ATTTGAGTGTGATTTGGTGG+TGG + chr2.4:45019598-45019617 MS.gene98408:intron 40.0%
!!! ATTTTTTTAGGGGTGGGGTT+GGG + chr2.4:45017581-45017600 MS.gene98408:intron 40.0%
!!! CATGTTTTGATGCAGAAGAC+AGG - chr2.4:45017852-45017871 None:intergenic 40.0%
!!! TATTTTTTTAGGGGTGGGGT+TGG + chr2.4:45017580-45017599 MS.gene98408:intron 40.0%
AAACGCTCGCTGAGATTTCT+AGG + chr2.4:45019294-45019313 MS.gene98408:CDS 45.0%
AATCACATCCTTTCCTTGGC+AGG + chr2.4:45018378-45018397 MS.gene98408:intron 45.0%
AATCCTCATGTAGCAGAGGT+GGG + chr2.4:45017445-45017464 MS.gene98408:intron 45.0%
AATCGTTTATCTGCGTAGGG+CGG + chr2.4:45017956-45017975 MS.gene98408:intron 45.0%
AATGATGCCTACGGGAAGAT+TGG + chr2.4:45018937-45018956 MS.gene98408:intron 45.0%
ACAGTAGCAATGATGCCTAC+GGG + chr2.4:45018929-45018948 MS.gene98408:intron 45.0%
AGGATTATAGGAGAGCTCCA+TGG - chr2.4:45017431-45017450 None:intergenic 45.0%
ATAGGGATGGAACCTCAATG+AGG + chr2.4:45017872-45017891 MS.gene98408:CDS 45.0%
CACAAGAACTGGAGTTCATG+TGG + chr2.4:45018499-45018518 MS.gene98408:intron 45.0%
GGATTATAGGAGAGCTCCAT+GGG - chr2.4:45017430-45017449 None:intergenic 45.0%
GGTACGTACTAGACCATGAT+TGG + chr2.4:45019138-45019157 MS.gene98408:intron 45.0%
GTAAGGTCTGCCAAATGGAT+TGG - chr2.4:45017241-45017260 None:intergenic 45.0%
GTAGAAAATCCATCTGGGCT+GGG + chr2.4:45018548-45018567 MS.gene98408:intron 45.0%
TAATCCTCATGTAGCAGAGG+TGG + chr2.4:45017444-45017463 MS.gene98408:intron 45.0%
TCATGTGTTGCGTCAGTATC+AGG + chr2.4:45018178-45018197 MS.gene98408:intron 45.0%
TGATGCTGTACATGATCCCA+TGG + chr2.4:45017411-45017430 MS.gene98408:CDS 45.0%
TGTAGAAAATCCATCTGGGC+TGG + chr2.4:45018547-45018566 MS.gene98408:intron 45.0%
!! AACCTATGAAGCATCGACAC+TGG + chr2.4:45018095-45018114 MS.gene98408:intron 45.0%
!!! TGCACTGGCCTTTTCAGAAA+TGG + chr2.4:45017732-45017751 MS.gene98408:CDS 45.0%
!!! TTTTTTTAGGGGTGGGGTTG+GGG + chr2.4:45017582-45017601 MS.gene98408:intron 45.0%
AAATTCTGACCCAGCCCAGA+TGG - chr2.4:45018560-45018579 None:intergenic 50.0%
AGCGAGCGTTTGTGTTAGGA+CGG - chr2.4:45019285-45019304 None:intergenic 50.0%
AGGATAGTCCTGCCAAGGAA+AGG - chr2.4:45018389-45018408 None:intergenic 50.0%
CTTGAAGGATAGTCCTGCCA+AGG - chr2.4:45018394-45018413 None:intergenic 50.0%
TCCATCTCCAATCTTCCCGT+AGG - chr2.4:45018947-45018966 None:intergenic 50.0%
TCTCAGCGAGCGTTTGTGTT+AGG - chr2.4:45019289-45019308 None:intergenic 50.0%
TGACACGCTAGCGGTTATAG+CGG + chr2.4:45018905-45018924 MS.gene98408:intron 50.0%
! AGATGTTGACGTGTCGGTGT+CGG - chr2.4:45018129-45018148 None:intergenic 50.0%
! AGTGACACACGTGTTGGTGT+TGG + chr2.4:45018202-45018221 MS.gene98408:intron 50.0%
! ATCTGGGCTGGGTCAGAATT+TGG + chr2.4:45018559-45018578 MS.gene98408:CDS 50.0%
! GCACCGACACTTCTAAACGA+AGG - chr2.4:45018277-45018296 None:intergenic 50.0%
! TCTGGGCTGGGTCAGAATTT+GGG + chr2.4:45018560-45018579 MS.gene98408:CDS 50.0%
! TTTTGGTCAGGATGCTGCAC+TGG + chr2.4:45017717-45017736 MS.gene98408:intron 50.0%
!! GTCCAGTGTCGATGCTTCAT+AGG - chr2.4:45018100-45018119 None:intergenic 50.0%
!! GTGTGATTTGGTGGTGGAAC+AGG + chr2.4:45019604-45019623 MS.gene98408:intron 50.0%
!! TAGAAGTGTCGGTGCTACAG+AGG + chr2.4:45018282-45018301 MS.gene98408:intron 50.0%
!!! TTTTTTAGGGGTGGGGTTGG+GGG + chr2.4:45017583-45017602 MS.gene98408:intron 50.0%
GCCTACGGGAAGATTGGAGA+TGG + chr2.4:45018943-45018962 MS.gene98408:intron 55.0%
TCAGGCAGTGACACACGTGT+TGG + chr2.4:45018196-45018215 MS.gene98408:intron 55.0%
! AGCGGCGCCGAGAAATTGTA+AGG - chr2.4:45017258-45017277 None:intergenic 55.0%
! CTGGGCTGGGTCAGAATTTG+GGG + chr2.4:45018561-45018580 MS.gene98408:CDS 55.0%
CGACCCACCTCTGCTACATG+AGG - chr2.4:45017451-45017470 None:intergenic 60.0%
GTTTATCTGCGTAGGGCGGC+TGG + chr2.4:45017960-45017979 MS.gene98408:intron 60.0%
TATCTGCGTAGGGCGGCTGG+TGG + chr2.4:45017963-45017982 MS.gene98408:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 45017076 45019691 45017076 ID=MS.gene98408
chr2.4 mRNA 45017076 45019691 45017076 ID=MS.gene98408.t1;Parent=MS.gene98408
chr2.4 exon 45017076 45017107 45017076 ID=MS.gene98408.t1.exon1;Parent=MS.gene98408.t1
chr2.4 CDS 45017076 45017107 45017076 ID=cds.MS.gene98408.t1;Parent=MS.gene98408.t1
chr2.4 exon 45017188 45017281 45017188 ID=MS.gene98408.t1.exon2;Parent=MS.gene98408.t1
chr2.4 CDS 45017188 45017281 45017188 ID=cds.MS.gene98408.t1;Parent=MS.gene98408.t1
chr2.4 exon 45017382 45017462 45017382 ID=MS.gene98408.t1.exon3;Parent=MS.gene98408.t1
chr2.4 CDS 45017382 45017462 45017382 ID=cds.MS.gene98408.t1;Parent=MS.gene98408.t1
chr2.4 exon 45017727 45017893 45017727 ID=MS.gene98408.t1.exon4;Parent=MS.gene98408.t1
chr2.4 CDS 45017727 45017893 45017727 ID=cds.MS.gene98408.t1;Parent=MS.gene98408.t1
chr2.4 exon 45017974 45018028 45017974 ID=MS.gene98408.t1.exon5;Parent=MS.gene98408.t1
chr2.4 CDS 45017974 45018028 45017974 ID=cds.MS.gene98408.t1;Parent=MS.gene98408.t1
chr2.4 exon 45018400 45018448 45018400 ID=MS.gene98408.t1.exon6;Parent=MS.gene98408.t1
chr2.4 CDS 45018400 45018448 45018400 ID=cds.MS.gene98408.t1;Parent=MS.gene98408.t1
chr2.4 exon 45018552 45018637 45018552 ID=MS.gene98408.t1.exon7;Parent=MS.gene98408.t1
chr2.4 CDS 45018552 45018637 45018552 ID=cds.MS.gene98408.t1;Parent=MS.gene98408.t1
chr2.4 exon 45019061 45019138 45019061 ID=MS.gene98408.t1.exon8;Parent=MS.gene98408.t1
chr2.4 CDS 45019061 45019138 45019061 ID=cds.MS.gene98408.t1;Parent=MS.gene98408.t1
chr2.4 exon 45019230 45019355 45019230 ID=MS.gene98408.t1.exon9;Parent=MS.gene98408.t1
chr2.4 CDS 45019230 45019355 45019230 ID=cds.MS.gene98408.t1;Parent=MS.gene98408.t1
chr2.4 exon 45019626 45019691 45019626 ID=MS.gene98408.t1.exon10;Parent=MS.gene98408.t1
chr2.4 CDS 45019626 45019691 45019626 ID=cds.MS.gene98408.t1;Parent=MS.gene98408.t1
Gene Sequence

>MS.gene98408

ATGGTTGGTCCAGTAATTGATAAACATCTAACGTAACTATCAGTCTGCCCAATATTCTTTGACATTAAGTACATTATCTCGGTGTTTGATTTAAAAGCAAATATTTATTCAGGAAGCTACGGTATTTCACAAGTTTCTCGAGCTTAATGGAGAAGAAAGAATCCAATCCATTTGGCAGACCTTACAATTTCTCGGCGCCGCTAGATGTCAGTAAATCATGTTACGCCTGTCTTAACTAGTTTTCTTTATGTGCAGACTGCTTATAGATGATATGCTCTATTTTACTTTGATTTTTCACTCTAACAGCAAACTCCAAATATTGCACTACTTCAATGTGATGCTGTACATGATCCCATGGAGCTCTCCTATAATCCTCATGTAGCAGAGGTGGGTCGAAACCTTTCAGTAGATATATTCATTGCACTTCATTAGTTTATTTTTTTTATCATAATTTCTATGAAAAAAATAATTTCTCTGAGTTAGTATATATTTAGTGGATTTTCATATTTTTTTAGGGGTGGGGTTGGGGGTACTTAAGAATTACTAGTGAAATGATGCGATGAACGTTTCTTCATCTTAGAGCAACTTAATATTATATTGTGTATTATGAGTTTGTATATTCATATAAAAATGTTTATGCATTTTGGTCAGGATGCTGCACTGGCCTTTTCAGAAATGGTACGCAGAAGAAACCCAGATTTCAACAAATTATTTGCTAGAAACTCAGAGCCTGTTTTAAGTTTAATTACTGGTGAATCGAGAGAATATGCCAACCTGTCTTCTGCATCAAAACATGATAGGGATGGAACCTCAATGAGGTACAGTTTGTTCTTGTTCTTCTGGTAAACTTGTTAATAGCATTTTTCCAAAGCGTGAACAAAATCGTTTATCTGCGTAGGGCGGCTGGTGGAAGTAAGAGATCAACAGATGGAGATCAAGATGATAGTAACAAAGTATGTTTATCGATTAATTTTTATATAAATGTAATGTTTTCTGCAACTGTTATCTTAAGAAGTTAGAACCTATGAAGCATCGACACTGGACACGACACCGACACCGACACGTCAACATCTGTAGTAAAGAAAGACAAAATTGAATGTAATCATGTGTTGCGTCAGTATCAGGCAGTGACACACGTGTTGGTGTTGGACACTAGATACACATTCAATTAGAAGTGTCGGTATCGGACACTGACACACCTTCGTTTAGAAGTGTCGGTGCTACAGAGGTTAGAACACTTAGGAAATGACTAGTTTATTAAAACTTAAAATTTTTCTTTAGTACAGGTTATAAAAAATGTCTAATCACATCCTTTCCTTGGCAGGACTATCCTTCAAGTATGAAGCAGAGATCTAACATGATTATTGGTGATGGTAAGATTATGGATTTTTCTTTTGATTATCTTCTAATAACTAATACAAAACACAAGAACTGGAGTTCATGTGGCTAACAGTCTTTCACCTTGTTTCTTTGTAGAAAATCCATCTGGGCTGGGTCAGAATTTGGGGACAGTTGTTAAGGAATCTGACACTGACATTGATCTTGATGCTCAACTAAAACTGGTATTATAAATTTTTATGCGTTTTCGTAGCATAAATGAATTTTTTTTTCCTTTCTGTGAATTAGCTAAACTAGAACAACAACCAGTCTTTTATTACGTTAATTTGTAAAATCTCTTTTGAATCATTATGATGTGAACATACTTAGAAATTCTGCTCACAACAACAGGTTCTCTCATACAAACATGTTATAGGAAGTGTTTTTAAGTAGTGGCGCTGTAGTACCATATCGCAGTAGAATATAATTTTTAAACAAATCGCTATTGTTTTTGACACGCTAGCGGTTATAGCGGTACAGTAGCAATGATGCCTACGGGAAGATTGGAGATGGAAAATAAACTTATACCCTTCTTAATGTTGCTAAGCTTAGTTTCATTTCTCGCACAATGTATAGCATTTCCTATTTAGTTGCATTTCTTTTGACAGGAAGCTGATGAAATAAGAAAAGAACGAAAAAGGCTGTCAAACAGGAAATCAGCTAAAAGATCAAAGATAAGGAAACAGGTACGTACTAGACCATGATTGGTGCAATTCAACAGTATTGAGATGTCTATGAATTGGACAATTGATGTTCTCGTTGTTTGTACCTTGTCAGAAAGAATGTGAAGAGCTATGTCAAAAGATAGACACTCTTAAAGATGAAAATGCCGTCCTAACACAAACGCTCGCTGAGATTTCTAGGAAATGTCTGGAGCTCACCGATGAAAACAATTCTATTGTGGTCAATAATCTTAACTCCCTTTCTTCTTTGTTCAATTATATATCATTCATTAAACTAAGATACTTGTTTGATTTGTGAAAATATTTTCTGTTTTCACTATTAATTAAGAAAAGGCCATCTTCTTTTATAGTATTTATATGAGAAAAAATTAAATAAACTAAGATACTTATATCCTTTGATCTCTCTTTGTTAGATGACAATTACTTATTTCAAGCTTTTAATATTTTCCAAGATTGCTCCTAATTTGAGTGTGATTTGGTGGTGGAACAGGAAGAGCTAGTTAAAGAGTATGGACCAGAATTGGTTGCAGATCTATTGCACATGAAGCCTACTTGA
Protein sequence

>MS.gene98408.t1

MVGPVIDKHLTKLRYFTSFSSLMEKKESNPFGRPYNFSAPLDQTPNIALLQCDAVHDPMELSYNPHVAEDAALAFSEMVRRRNPDFNKLFARNSEPVLSLITGESREYANLSSASKHDRDGTSMRAAGGSKRSTDGDQDDSNKDYPSSMKQRSNMIIGDENPSGLGQNLGTVVKESDTDIDLDAQLKLEADEIRKERKRLSNRKSAKRSKIRKQKECEELCQKIDTLKDENAVLTQTLAEISRKCLELTDENNSIVEELVKEYGPELVADLLHMKPT