AlfalfaGEDB | MS.gene98410

M. sativa cultivar XinJiangDaYe / MS.gene98410

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98410.t1	AES65701.1	88.4	190	17	2	1	189	92	277	5.40E-76	293.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98410.t1	G7IST5	88.4	190	17	2	1	189	92	277	3.9e-76	293.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene98410.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98410.t1	MTR_2g045630	88.421	190	17	2	1	189	92	277	2.66e-113	324
MS.gene98410.t1	MTR_2g045670	77.487	191	29	2	1	190	104	281	9.50e-95	277
MS.gene98410.t1	MTR_2g045700	77.487	191	29	2	1	190	94	271	4.11e-91	267
MS.gene98410.t1	MTR_1g034500	70.833	192	41	3	1	190	129	307	5.73e-81	243
MS.gene98410.t1	MTR_8g077950	43.750	80	44	1	106	184	258	337	1.53e-13	68.2
MS.gene98410.t1	MTR_8g077950	43.750	80	44	1	106	184	260	339	1.62e-13	67.8
MS.gene98410.t1	MTR_8g077950	43.750	80	44	1	106	184	200	279	3.28e-13	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98410.t1	AT4G36730	40.000	80	47	1	106	184	220	299	4.73e-12	63.5
MS.gene98410.t1	AT4G36730	40.000	80	47	1	106	184	222	301	5.58e-12	63.5

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Find 26 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTTCAAGTAGGCTTCA+TGG	0.384295	2.4:-45041234	None:intergenic
AAGAGATCTAACATGATTAT+TGG	0.281485	2.4:+45039978	MS.gene98410:CDS
AAGATCAAAGATAAAGAAAC+AGG	0.437513	2.4:+45040446	MS.gene98410:CDS
AAGTTTCAAGTAGGCTTCAT+GGG	0.491094	2.4:-45041233	None:intergenic
ACAGGAAGAGCTCGTTAAAG+AGG	0.547350	2.4:+45041184	MS.gene98410:intron
ACTGGGGAATCCACTAAATA+TGG	0.264921	2.4:+45039567	MS.gene98410:CDS
AGACTGGTTTCCATATTTAG+TGG	0.453132	2.4:-45039577	None:intergenic
AGAGGGACTAGAATCAATTG+CGG	0.679585	2.4:+45041202	MS.gene98410:CDS
ATAGGGATGGAACCTTAATG+AGG	0.644156	2.4:+45039616	MS.gene98410:CDS
CAATGAAAACGATTCTATTG+AGG	0.546332	2.4:+45040751	MS.gene98410:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAAAGACTGTCAAAC+AGG	+	chr2.4:45040412-45040431	MS.gene98410:CDS	30.0%
ACTCAAATTAGCAAGAATCT+TGG	-	chr2.4:45041148-45041167	None:intergenic	30.0%
CAATGAAAACGATTCTATTG+AGG	+	chr2.4:45040751-45040770	MS.gene98410:CDS	30.0%
CACTCTTAAGGATGAAAATT+TGG	+	chr2.4:45040679-45040698	MS.gene98410:CDS	30.0%
CTAATTTGAGTGTAATTTGG+TGG	+	chr2.4:45041157-45041176	MS.gene98410:intron	30.0%
CTTCTAATGTGTTTGTTTGA+TGG	+	chr2.4:45040573-45040592	MS.gene98410:intron	30.0%
GATCTCTTCTTCATACTTAA+AGG	-	chr2.4:45039966-45039985	None:intergenic	30.0%
GTCTAATTACATCCTTTCTT+TGG	+	chr2.4:45039931-45039950	MS.gene98410:intron	30.0%
TCTAACATGATTATTGGTGA+TGG	+	chr2.4:45039984-45040003	MS.gene98410:CDS	30.0%
TCTTCATATTCTTTCTGACA+AGG	-	chr2.4:45040641-45040660	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	45039564	45041250	45039564	ID=MS.gene98410
chr2.4	mRNA	45039564	45041250	45039564	ID=MS.gene98410.t1;Parent=MS.gene98410
chr2.4	exon	45039564	45039637	45039564	ID=MS.gene98410.t1.exon1;Parent=MS.gene98410.t1
chr2.4	CDS	45039564	45039637	45039564	ID=cds.MS.gene98410.t1;Parent=MS.gene98410.t1
chr2.4	exon	45039718	45039772	45039718	ID=MS.gene98410.t1.exon2;Parent=MS.gene98410.t1
chr2.4	CDS	45039718	45039772	45039718	ID=cds.MS.gene98410.t1;Parent=MS.gene98410.t1
chr2.4	exon	45039957	45040005	45039957	ID=MS.gene98410.t1.exon3;Parent=MS.gene98410.t1
chr2.4	CDS	45039957	45040005	45039957	ID=cds.MS.gene98410.t1;Parent=MS.gene98410.t1
chr2.4	exon	45040115	45040242	45040115	ID=MS.gene98410.t1.exon4;Parent=MS.gene98410.t1
chr2.4	CDS	45040115	45040242	45040115	ID=cds.MS.gene98410.t1;Parent=MS.gene98410.t1
chr2.4	exon	45040390	45040467	45040390	ID=MS.gene98410.t1.exon5;Parent=MS.gene98410.t1
chr2.4	CDS	45040390	45040467	45040390	ID=cds.MS.gene98410.t1;Parent=MS.gene98410.t1
chr2.4	exon	45040647	45040772	45040647	ID=MS.gene98410.t1.exon6;Parent=MS.gene98410.t1
chr2.4	CDS	45040647	45040772	45040647	ID=cds.MS.gene98410.t1;Parent=MS.gene98410.t1
chr2.4	exon	45041188	45041250	45041188	ID=MS.gene98410.t1.exon7;Parent=MS.gene98410.t1
chr2.4	CDS	45041188	45041250	45041188	ID=cds.MS.gene98410.t1;Parent=MS.gene98410.t1

Gene Sequence

>MS.gene98410

ATGACTGGGGAATCCACTAAATATGGAAACCAGTCTTCTGCACCAAAAAATGATAGGGATGGAACCTTAATGAGGTACAGTTTGTTCTTGATCTTCTGGTAAATTTGTTAATAGCATTTTTCCAAAGCCCGAACAAAATCCTTTGTGTGCGCAGTGCAGCAAGTGGAAGCATGAGATCAACAGATGGAGATCAAGATGATAGTAACAAAGTATGTTTATCGATTAATTTTTATATAAATGTTGTTGATGAATGTAATGTGTTCTGCCACTTTTATCTTAAGAAGTTTAGAAGACTTAAGAAATGAATAGTTTATTAAAGCTTTGAAATTTTTCTTTAGTACAGGTTATATAAAATTTCGGCAAAAATGTCTAATTACATCCTTTCTTTGGCAGGATTCTCCTTTAAGTATGAAGAAGAGATCTAACATGATTATTGGTGATGGTAAGATTTCGATTTTTCTTTTGATTATTTTATAATAAGAATTTATGCTTTATTTGATCTATAATTTGAATGTTCAGAAGGTGACTAATACAAAGCACATGAACTGCAGTTCACGTGGCTAACAGTCTTGCATCTTGTTTCTTTGTAGAAAATCCATCTGGGATGGCTCAGAATTCGTGGACAGTCGTCAAGGAATCTGACACTGACATTGATGTTGATGCTCAACTAAAAAATATGGTATTATAAAGTTTTTTGTGTTTTCGTAGCTAAATATGTATAGTAAATACACTTCAGAAAGTAAATCCCTTCTTAATGTTGCTAAGTTTAGTTGCATTTCTTGCACAATGTCTAGCATTTCCTATTTAGTAGCATTTCTTTTGACAGGAAGTTGATGAAATAAGAAAAGAAAGAAAAAGACTGTCAAACAGGAAATCAGCTCAAAGATCAAAGATAAAGAAACAGGTACGTACATGACCATGATCGGTGCATTGCAACATTTATAAATAGGAAATGGTTTGGTTGCATATGATTAAAATGTAAAAAGAAAAAGATGATCTGATTATCTAACTTCTAATGTGTTTGTTTGATGGTCTATTTAACTTGTATTTCATTCGATGTTATCATTATTTGTGCCTTGTCAGAAAGAATATGAAGAGCAATGTCAAAAGATAAACACTCTTAAGGATGAAAATTTGGTCCTAACACAAATGCTCGCTGAACTTTCAGAGAAATGTCTCGAGCTCACCAATGAAAACGATTCTATTGAGGTCAATCATTTTAATTCCCTTTCTTACTTGTTCAATTTTATATCATTCAATAAACAAGATACTTGTTTGATTTGAGAAATATTTTTTTCAATTAAAAAAATTCCATCTTGTTTTCTATATTTGTATGAGAAACAATTAAATAAACTAAGATGCTTATGAATCCAAAAATCATGATGTCCATTAATGTAAACGATTCTATTGATCTCTCTTTGTAACAAACTTTCTAATAAACTAGTGCAACAAATTATCTAAGTTACCTAACATGAATGTAGCCAGGTTCATCTTGTTAAATGGAAATTATTTATTTTCCAAGATTGGTTTATAAAGAAGTTAATTCTCCGTATTGTGTTGTGGTTCTCAATGCTCTATTTTCCAAGATTCTTGCTAATTTGAGTGTAATTTGGTGGTGGAACAGGAAGAGCTCGTTAAAGAGGGACTAGAATCAATTGCGGATCTATTGCCCATGAAGCCTACTTGA

Protein sequence

>MS.gene98410.t1

MTGESTKYGNQSSAPKNDRDGTLMSAASGSMRSTDGDQDDSNKDSPLSMKKRSNMIIGDVHVANSLASCFFVENPSGMAQNSWTVVKESDTDIDVDAQLKNMEVDEIRKERKRLSNRKSAQRSKIKKQKEYEEQCQKINTLKDENLVLTQMLAELSEKCLELTNENDSIEEELVKEGLESIADLLPMKPT