AlfalfaGEDB | MS.gene98515

M. sativa cultivar XinJiangDaYe / MS.gene98515

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98515.t1	RHN72439.1	55.4	864	125	2	39	642	1	864	8.40E-230	806.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98515.t1	Q9SZL8	34.5	194	123	4	117	308	77	268	2.2e-21	105.5
MS.gene98515.t1	Q9SZL8	24.7	162	121	1	296	457	483	643	8.5e-13	77.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98515.t1	A0A396J342	55.4	864	125	2	39	642	1	864	6.1e-230	806.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene98515.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98515.t1	MTR_7g446520	53.846	273	101	3	58	325	30	282	7.40e-88	277
MS.gene98515.t1	MTR_7g028855	54.460	213	84	2	57	256	51	263	2.94e-71	238
MS.gene98515.t1	MTR_1g050570	72.840	162	38	2	473	628	11	172	2.88e-60	199
MS.gene98515.t1	MTR_7g446480	74.419	129	33	0	190	318	140	268	1.86e-58	199
MS.gene98515.t1	MTR_7g446510	76.230	122	29	0	190	311	155	276	1.19e-56	195
MS.gene98515.t1	MTR_7g446510	33.333	159	74	4	313	471	29	155	2.04e-16	81.3
MS.gene98515.t1	MTR_8g467420	78.462	130	28	0	37	166	2	131	3.42e-52	177
MS.gene98515.t1	MTR_1g070355	35.323	201	128	1	113	313	74	272	7.29e-34	137
MS.gene98515.t1	MTR_5g076070	29.577	213	146	2	105	316	45	254	1.89e-29	118
MS.gene98515.t1	MTR_6g051425	29.630	189	129	3	123	308	27	214	1.30e-22	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98515.t1	AT4G38180	34.021	194	124	4	117	308	77	268	5.16e-22	101
MS.gene98515.t1	AT4G38180	26.712	146	106	1	321	466	508	652	1.74e-13	74.3
MS.gene98515.t1	AT5G28530	29.814	161	109	3	119	276	61	220	8.15e-15	78.6
MS.gene98515.t1	AT5G28530	29.814	161	109	3	119	276	61	220	9.47e-15	78.2
MS.gene98515.t1	AT5G28530	29.814	161	109	3	119	276	61	220	1.25e-14	77.8
MS.gene98515.t1	AT5G28530	29.814	161	109	3	119	276	61	220	1.25e-14	77.8
MS.gene98515.t1	AT5G28530	29.814	161	109	3	119	276	61	220	1.28e-14	77.8
MS.gene98515.t1	AT1G10240	33.333	165	98	6	119	275	54	214	3.01e-14	76.6
MS.gene98515.t1	AT1G10240	33.333	165	98	6	119	275	54	214	3.01e-14	76.6
MS.gene98515.t1	AT4G38170	29.530	149	103	2	301	448	252	399	1.10e-13	74.7

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Find 115 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGAAATTATTGAGGC+TGG	0.470276	2.1:+44790248	MS.gene98515:CDS
AAATTAACAGATGATCAGGT+AGG	0.630827	2.1:+44790715	MS.gene98515:intron
AACCTGAGGCTTGGAGAGCG+AGG	0.625854	2.1:-44787771	None:intergenic
AACTTCCTGTTCTGGGCTCT+TGG	0.321078	2.1:+44791341	MS.gene98515:CDS
AAGAATTTCATCAGAGGCAA+TGG	0.477228	2.1:-44788830	None:intergenic
AAGGGTGGATACGCTGATGT+AGG	0.558445	2.1:+44789285	MS.gene98515:CDS
AAGTTTAAGAATTTCATCAG+AGG	0.626746	2.1:-44788836	None:intergenic
AATCAGAACCTGTCATATAA+TGG	0.299188	2.1:+44789245	MS.gene98515:CDS
AATCATCAACTTCCTGTTCT+GGG	0.413052	2.1:+44791334	MS.gene98515:CDS
AATGTTTGGTTATGACCCGT+TGG	0.566267	2.1:+44790480	MS.gene98515:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAATCGAGTCATATAAG+TGG	+	chr2.1:44789640-44789659	MS.gene98515:intron	30.0%
AAAGAAGCCTCAAAAAAGAA+TGG	+	chr2.1:44790617-44790636	MS.gene98515:intron	30.0%
AAAGATGAAATTATTGAGGC+TGG	+	chr2.1:44790248-44790267	MS.gene98515:CDS	30.0%
AAATTAACAGATGATCAGGT+AGG	+	chr2.1:44790715-44790734	MS.gene98515:intron	30.0%
AACAATCGAGTCATATAAGT+GGG	+	chr2.1:44789641-44789660	MS.gene98515:intron	30.0%
AAGACGTAGATTTCATAGTT+TGG	-	chr2.1:44788508-44788527	None:intergenic	30.0%
AATCAGAACCTGTCATATAA+TGG	+	chr2.1:44789245-44789264	MS.gene98515:CDS	30.0%
AGAATTGGTATCTAACTCTA+TGG	+	chr2.1:44791004-44791023	MS.gene98515:CDS	30.0%
AGCACAATTTACAGAGATTT+CGG	+	chr2.1:44791194-44791213	MS.gene98515:CDS	30.0%
ATCAGAACCTGTCATATAAT+GGG	+	chr2.1:44789246-44789265	MS.gene98515:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	44787684	44791422	44787684	ID=MS.gene98515
chr2.1	mRNA	44787684	44791422	44787684	ID=MS.gene98515.t1;Parent=MS.gene98515
chr2.1	exon	44787684	44787790	44787684	ID=MS.gene98515.t1.exon1;Parent=MS.gene98515.t1
chr2.1	CDS	44787684	44787790	44787684	ID=cds.MS.gene98515.t1;Parent=MS.gene98515.t1
chr2.1	exon	44788615	44789443	44788615	ID=MS.gene98515.t1.exon2;Parent=MS.gene98515.t1
chr2.1	CDS	44788615	44789443	44788615	ID=cds.MS.gene98515.t1;Parent=MS.gene98515.t1
chr2.1	exon	44790110	44790614	44790110	ID=MS.gene98515.t1.exon3;Parent=MS.gene98515.t1
chr2.1	CDS	44790110	44790614	44790110	ID=cds.MS.gene98515.t1;Parent=MS.gene98515.t1
chr2.1	exon	44790725	44790852	44790725	ID=MS.gene98515.t1.exon4;Parent=MS.gene98515.t1
chr2.1	CDS	44790725	44790852	44790725	ID=cds.MS.gene98515.t1;Parent=MS.gene98515.t1
chr2.1	exon	44790972	44791052	44790972	ID=MS.gene98515.t1.exon5;Parent=MS.gene98515.t1
chr2.1	CDS	44790972	44791052	44790972	ID=cds.MS.gene98515.t1;Parent=MS.gene98515.t1
chr2.1	exon	44791132	44791422	44791132	ID=MS.gene98515.t1.exon6;Parent=MS.gene98515.t1
chr2.1	CDS	44791132	44791422	44791132	ID=cds.MS.gene98515.t1;Parent=MS.gene98515.t1

Gene Sequence

>MS.gene98515

ATGCGACCCACTCCGTTGCCTCTTCTTTCTCTCTCGTGTGCGCGACCCACGTGCGACCCAGCAGCGCCATCTTCACTCCGTCCACCACCTCGCTCTCCAAGCCTCAGGTTCGTTTTCTAACACTCGACAGAACAATCTGAATGAATGAATCTCCTTTTTCTTTTTAATTAGGGTTTTTTGATTTTGGATTCTTTTATATGAATGTAATAGTGTTTAATTGGTTGATTGATTATGAAATTGGCATTATGAGGAATATATTAGTGTTGTGAAACCATTGTTAGGGTTTTGATGTGGCCAAAATTTGCGATTTTGTGATTATGCAATTGGAGATTATTTTTTTGGGGTCCGAAATTGGTACTAATTTGGTGTTATTGTTGTTGGTATGAATCTGTTGAGGGTTGGTGTTTTTGCTCTTGATATGCCCAAACAAGCCATATTGTTTTGGTTCATTGTGTAATTCAAGGACTGTTATTTCACTTTTCATATCAATCTTCTAACACAATTGAGCTACTTCAAGGATGTAGTGTAGTTATTAAAGCAGACACTAGGTTATAACAAAAAAAAGGTTTTCAACAATGTTATATACTTGTTTAGTATTGGAGGCAACAATTACGTTGGCATTCACTACATCTTATATTGTCTTTGTTTCCATTTGTGTGCTGCCATTTATATGTACATTTGGGTGGCCCTGTAACATATACGCTGGGGTTTTTGTTTGTTTTCTTAGCACCTTCTTTCTTGTCTTAGGAAGATGGTTTTGCTTGCAATAATATATTGGCTATTTAAAAAAAAAATATACATGAAATAGTTTCCATACCTAGCCAAACTATGAAATCTACGTCTTGTGCTAGGCTGCATCTTTTGAAATAATATTATGTTGTTTTAAAAAAAAAAAAAAACTCATGCTTTGTTTAAATTTTCGAAATTTTAGGGTTGTCATGGAACACCACAAAGATTGTTTGGACGCCGATTCCAGTGAAGTAGAATACACAGATGATTTATATGATGATGAAGAACATCACAGTTCGTCTGATGCTGAAGATGATGTTGATGGTAATGCTGCTGATGATGTTCATGATGAATCAGTTCAACAAGAGGGTTCAATCAACAATGCATTAGTAGGTGAAAGGTTGGTGAATGTAAATTCCATTGCCTCTGATGAAATTCTTAAACTTGAATTTGGCACTGTTGATGAAGCATATGAATTTTATTATCGTTATGGAAGATGCAAAGGTTTTGCCATTAGGAAAGGTGATGTTAGGAGCAATAGTAGTGGAATAATTACAATGAGAGAGTTTGTGTGCAACAAGCAAGGCTTAAGAGACAAGAAGCACTTATCTAGGAATGATAGAAAAAGAGATCATAAACGTATCACCCGAACAAATTGTGAAGCAAGGCTTCGTGTACGTTACAAAGCCAAAAAGGGGAGATATGTAGTGTCTAAATTTGAAGAGGGGCATAACCATGAATTAACCCCACCTAAATTTACACACTTGCACCCACTGTATCGTAAAATCTCTGAAGCAGATAGTGCCCAACTTGATGCTCTTCAATCACATGGAATCAGAACCTGTCATATAATGGGATATATGGTTGCTCAGAAGGGTGGATACGCTGATGTAGGATTTACTAAGAAAGATCTGTATAACTATTTTGATAAAAAGATGCGTGATGTCATTAAAGACGGTGATGTTGCTGCTGCTCTAAAGCATCTTAATGTGAAGTCTTCCACCGATCCAATGTTATATGCTGAATACGATGTCAACATTGATGGAAGAATGAAAAGTCTGTTTTGGGCTGATGGGAGTAGTAGGTCTGATTATTTTTGTTTTGGCGACGTTTTGGCGTTTGACGCAACGTACAAGAAGAACAAATACAACTATCCGTTGTGTATATTTTCTGGGTGTAACCACCATTCACAGACCATTATATTTGCCGTTGCGTTGTTGGAGGATGAAACAATCGAGTCATATAAGTGGGTCTTGAACCGTTTTTTAGAATGTATGGAAAATAAATTCCCAAAAGCAGTTGTAACAGATGGTGATGGATCAATGAGGGAAGCTATTAAACAGGTATTCCCTGATGCATCTCATCGCTTATGTGCCTGGCATCTGCATAAGAATGCGCAAGAAAATGTAAAGAAAACACCATTTCTGGAGGGTTTTGGAAAAGCAATGTACTCAAATTTTACACCGGAGCAATTTGAGGAGTTTTGGTCAGAGTTAATTCAGAATAATGAACTTGAAGAAAATGATTGGGTTAAGAAGACATACGCGAACAAGTCACTGTGGGCAACCGCATATTTACGTGATAAGTTCTTTGGACGTATTAGAACCACATCTCAATGTGAAGCTATCAATGCAATTGTCAAGACATATGTCAGAGCGAAAGGCAACATTTTTGAATTTATGCATAATTTTGAACAGGTTTTGAGAGATTACAGAAATAGTGAGCTTGCTGCTGAGTTTAAATCAAAATTCACAGAACCTGTGTTGACGACTCACCTGCGTTCGATTGAGAGTGATGCTGCCAAGATTTACACAGCAGAGATCTTTAAAGAAGTTAAAGATGAAATTATTGAGGCTGGTGCAGTAAGTCTCAAGAGCAAAGAATGTGTGGGGGATACCATGGTTTACACATTGCGAAAATATCGTGAGAAAGGCATTGAAAGAGAGGTTGTATACGATGCTGCAAGTTTAGAATTTCAGTGTTCGTGTAGACTATTTGAGACACGTGGGATTCCATGTTGTCATGTTTTTTTTGTGATGAAGGAAGAAGACATTGATCACATACCAAAATGTTTGGTTATGACCCGTTGGACAAAGAACGCAAAAGATGCATTTCTGAACAACGATTCCAATGGGGAAATGGATTCTGATATGATTGAAGTTGCTAGATTTGGTGCTTACTGTTCTGCTTTTACTGCATTCTGTAAAGAAGCCTCAAAAAAGAATGGTGTATTTAGGGACATAATGAAATTTTAAATCTTCAACAAAAGTATTGTGATACTGAATACTCTACTCGGTCTGAGAAATTAACAGATGATCAGGTAGGTGATCCAATCCCTGTGAAGAGTAAAGGTGCTCCAAAGAAGAAGAAGAATGCTACAAAAAGTGTCAGACACTGTTCAAAATGCAGAAGTACAAGTCATACTGCAAGGCATTGTTCGGTAATTTGTCTATATATGATCTGATGAATAATATTTTCACGAAATATGATTTATAATGTGCATGATAAGATATATATATATATATATATATATATATATAAGCAAGTTAATTTTTGCAGGATACACAGAACGGTGAACATGAACATGATGCAGAATTGGTATCTAACTCTATGGATGATTCTTTAAGCCAAAAAGAAAAGGTATGTTTGTTTGCTATGTTTTTACAATGCATTAGAATTACATCTTAAGAAAATGTGTATTAATTTATGTCATTCACAGAAAAATAAAAGGAAACCTAATGGTAATGTTAGCACAAGCAAGCAAAAGAAATATAAAGAGGCAGCACAATTTACAGAGATTTCGGAGACAGCTGATTTGCCGGTAACAACTGCAGTTCAACCTACTGTTCATGTGTTCCAGCCTGCTATTAATCCAATGCAAATGCAGCCAATTTACCCCAATTATGGACTTCATGGCGGTGAATCATCAACTTCCTGTTCTGGGCTCTTGGCACAAGTCATGAATTTTGGTGGTCATGGATTACATTTGAATAGTAATTTAGATAAATAA

Protein sequence

>MS.gene98515.t1

MRPTPLPLLSLSCARPTCDPAAPSSLRPPPRSPSLRVVMEHHKDCLDADSSEVEYTDDLYDDEEHHSSSDAEDDVDGNAADDVHDESVQQEGSINNALVGERLVNVNSIASDEILKLEFGTVDEAYEFYYRYGRCKGFAIRKGDVRSNSSGIITMREFVCNKQGLRDKKHLSRNDRKRDHKRITRTNCEARLRVRYKAKKGRYVVSKFEEGHNHELTPPKFTHLHPLYRKISEADSAQLDALQSHGIRTCHIMGYMVAQKGGYADVGFTKKDLYNYFDKKMRDVIKDGDVAAALKHLNVKSSTDPMLYAEYDVLRDYRNSELAAEFKSKFTEPVLTTHLRSIESDAAKIYTAEIFKEVKDEIIEAGAVSLKSKECVGDTMVYTLRKYREKGIEREVVYDAASLEFQCSCRLFETRGIPCCHVFFVMKEEDIDHIPKCLVMTRWTKNAKDAFLNNDSNGEMDSDMIEVARFGAYCSAFTAFYDQVGDPIPVKSKGAPKKKKNATKSVRHCSKCRSTSHTARHCSDTQNGEHEHDAELVSNSMDDSLSQKEKKNKRKPNGNVSTSKQKKYKEAAQFTEISETADLPVTTAVQPTVHVFQPAINPMQMQPIYPNYGLHGGESSTSCSGLLAQVMNFGGHGLHLNSNLDK