AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98515

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98515.t1 MTR_7g446520 53.846 273 101 3 58 325 30 282 7.40e-88 277
MS.gene98515.t1 MTR_7g028855 54.460 213 84 2 57 256 51 263 2.94e-71 238
MS.gene98515.t1 MTR_1g050570 72.840 162 38 2 473 628 11 172 2.88e-60 199
MS.gene98515.t1 MTR_7g446480 74.419 129 33 0 190 318 140 268 1.86e-58 199
MS.gene98515.t1 MTR_7g446510 76.230 122 29 0 190 311 155 276 1.19e-56 195
MS.gene98515.t1 MTR_7g446510 33.333 159 74 4 313 471 29 155 2.04e-16 81.3
MS.gene98515.t1 MTR_8g467420 78.462 130 28 0 37 166 2 131 3.42e-52 177
MS.gene98515.t1 MTR_1g070355 35.323 201 128 1 113 313 74 272 7.29e-34 137
MS.gene98515.t1 MTR_5g076070 29.577 213 146 2 105 316 45 254 1.89e-29 118
MS.gene98515.t1 MTR_6g051425 29.630 189 129 3 123 308 27 214 1.30e-22 100
MS.gene98515.t1 MTR_6g022080 29.070 172 122 0 104 275 76 247 9.79e-22 95.5
MS.gene98515.t1 MTR_0402s0040 29.110 292 166 11 80 354 6 273 1.14e-21 99.4
MS.gene98515.t1 MTR_8g468460 47.872 94 48 1 314 407 13 105 1.69e-20 87.4
MS.gene98515.t1 MTR_1g008290 34.234 111 68 2 185 295 22 127 6.38e-14 70.1
MS.gene98515.t1 MTR_6g053140 26.036 169 111 2 38 206 35 189 4.02e-13 69.3
MS.gene98515.t1 MTR_0060s0090 39.241 79 48 0 116 194 59 137 1.34e-12 66.2
MS.gene98515.t1 MTR_5g015480 32.258 186 111 7 53 234 2 176 1.83e-12 68.6
MS.gene98515.t1 MTR_2g098880 35.514 107 67 2 114 219 62 167 2.51e-12 67.8
MS.gene98515.t1 MTR_2g098880 35.514 107 67 2 114 219 74 179 3.68e-12 67.4
MS.gene98515.t1 MTR_7g074790 30.723 166 94 3 115 280 12 156 1.22e-11 65.5
MS.gene98515.t1 MTR_2g101460 30.400 125 87 0 104 228 36 160 2.12e-11 63.9
MS.gene98515.t1 MTR_4g035820 29.000 200 127 8 119 309 81 274 2.73e-11 67.0
MS.gene98515.t1 MTR_2g101460 30.400 125 87 0 104 228 46 170 3.13e-11 63.9
MS.gene98515.t1 MTR_5g039760 25.000 212 132 5 103 314 1 185 7.74e-11 62.0
MS.gene98515.t1 MTR_7g113010 27.136 199 109 7 64 260 422 586 9.50e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98515.t1 AT4G38180 34.021 194 124 4 117 308 77 268 5.16e-22 101
MS.gene98515.t1 AT4G38180 26.712 146 106 1 321 466 508 652 1.74e-13 74.3
MS.gene98515.t1 AT5G28530 29.814 161 109 3 119 276 61 220 8.15e-15 78.6
MS.gene98515.t1 AT5G28530 29.814 161 109 3 119 276 61 220 9.47e-15 78.2
MS.gene98515.t1 AT5G28530 29.814 161 109 3 119 276 61 220 1.25e-14 77.8
MS.gene98515.t1 AT5G28530 29.814 161 109 3 119 276 61 220 1.25e-14 77.8
MS.gene98515.t1 AT5G28530 29.814 161 109 3 119 276 61 220 1.28e-14 77.8
MS.gene98515.t1 AT1G10240 33.333 165 98 6 119 275 54 214 3.01e-14 76.6
MS.gene98515.t1 AT1G10240 33.333 165 98 6 119 275 54 214 3.01e-14 76.6
MS.gene98515.t1 AT4G38170 29.530 149 103 2 301 448 252 399 1.10e-13 74.7
MS.gene98515.t1 AT2G27110 28.667 150 105 2 300 448 431 579 2.39e-13 73.9
MS.gene98515.t1 AT2G27110 28.667 150 105 2 300 448 431 579 2.39e-13 73.9
MS.gene98515.t1 AT2G27110 28.667 150 105 2 300 448 286 434 2.76e-13 73.6
MS.gene98515.t1 AT4G15090 24.510 204 148 5 117 318 55 254 3.77e-12 70.1
MS.gene98515.t1 AT4G15090 24.510 204 148 5 117 318 55 254 3.77e-12 70.1
MS.gene98515.t1 AT4G15090 24.510 204 148 5 117 318 55 254 3.77e-12 70.1
MS.gene98515.t1 AT4G15090 24.510 204 148 5 117 318 55 254 3.77e-12 70.1
MS.gene98515.t1 AT4G15090 24.510 204 148 5 117 318 55 254 3.77e-12 70.1
MS.gene98515.t1 AT3G06250 29.078 141 97 3 325 464 582 720 4.53e-12 69.7
MS.gene98515.t1 AT3G06250 29.078 141 97 3 325 464 582 720 4.53e-12 69.7
MS.gene98515.t1 AT3G06250 29.078 141 97 3 325 464 582 720 4.53e-12 69.7
MS.gene98515.t1 AT5G18960 28.369 141 98 3 325 464 606 744 5.81e-12 69.3
MS.gene98515.t1 AT5G18960 28.369 141 98 3 325 464 606 744 5.81e-12 69.3
MS.gene98515.t1 AT2G32250 25.946 185 126 5 325 509 393 566 1.38e-11 68.2
MS.gene98515.t1 AT2G32250 25.946 185 126 5 325 509 393 566 1.39e-11 68.2
MS.gene98515.t1 AT2G32250 25.946 185 126 5 325 509 434 607 1.43e-11 68.2
MS.gene98515.t1 AT2G32250 25.946 185 126 5 325 509 434 607 1.43e-11 68.2
MS.gene98515.t1 AT3G07500 36.792 106 63 3 114 218 34 136 1.44e-11 65.1
MS.gene98515.t1 AT2G32250 25.946 185 126 5 325 509 434 607 1.52e-11 68.2
MS.gene98515.t1 AT2G32250 25.946 185 126 5 325 509 434 607 1.52e-11 68.2
MS.gene98515.t1 AT2G32250 25.946 185 126 5 325 509 434 607 1.52e-11 68.2
MS.gene98515.t1 AT2G32250 25.946 185 126 5 325 509 434 607 1.87e-11 67.8

Find 115 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGCATTCTTCTTCTTCTT+TGG 0.173135 2.1:-44790769 None:intergenic
GAAATTCTTAAACTTGAATT+TGG 0.176852 2.1:+44788844 MS.gene98515:CDS
ACCGCCATGAAGTCCATAAT+TGG 0.212290 2.1:-44791310 None:intergenic
TTGGCACAAGTCATGAATTT+TGG 0.213622 2.1:+44791360 MS.gene98515:CDS
GAATCATCAACTTCCTGTTC+TGG 0.232408 2.1:+44791333 MS.gene98515:CDS
CAGCCAATTTACCCCAATTA+TGG 0.247084 2.1:+44791297 MS.gene98515:CDS
TGTACGTTACAAAGCCAAAA+AGG 0.274297 2.1:+44789086 MS.gene98515:CDS
AGTCCATAATTGGGGTAAAT+TGG 0.292438 2.1:-44791300 None:intergenic
AATCAGAACCTGTCATATAA+TGG 0.299188 2.1:+44789245 MS.gene98515:CDS
CTGTCATATAATGGGATATA+TGG 0.309391 2.1:+44789254 MS.gene98515:CDS
AGCACAATTTACAGAGATTT+CGG 0.314466 2.1:+44791194 MS.gene98515:CDS
GCCTTGCTTCACAATTTGTT+CGG 0.315678 2.1:-44789059 None:intergenic
AACTTCCTGTTCTGGGCTCT+TGG 0.321078 2.1:+44791341 MS.gene98515:CDS
TACCCCAATTATGGACTTCA+TGG 0.333754 2.1:+44791306 MS.gene98515:CDS
CGGAGTGAAGATGGCGCTGC+TGG 0.341163 2.1:-44787741 None:intergenic
CCATTAGGAAAGGTGATGTT+AGG 0.342221 2.1:+44788923 MS.gene98515:CDS
CCTTGCTTCACAATTTGTTC+GGG 0.352426 2.1:-44789058 None:intergenic
TGATCACATACCAAAATGTT+TGG 0.362382 2.1:+44790466 MS.gene98515:CDS
ATGATTGAAGTTGCTAGATT+TGG 0.363762 2.1:+44790563 MS.gene98515:CDS
TTCGGAGACAGCTGATTTGC+CGG 0.364644 2.1:+44791212 MS.gene98515:CDS
GGAACACCACAAAGATTGTT+TGG 0.365076 2.1:+44788624 MS.gene98515:CDS
ATTTAGGTGGGGTTAATTCA+TGG 0.368536 2.1:-44789146 None:intergenic
CTTGTGCTAACATTACCATT+AGG 0.373645 2.1:-44791147 None:intergenic
CAACGATTCCAATGGGGAAA+TGG 0.377917 2.1:+44790532 MS.gene98515:CDS
CGGGTCATAACCAAACATTT+TGG 0.385088 2.1:-44790476 None:intergenic
CCGCCATGAAGTCCATAATT+GGG 0.393287 2.1:-44791309 None:intergenic
CCTTTACTCTTCACAGGGAT+TGG 0.395830 2.1:-44790742 None:intergenic
ATCAGAACCTGTCATATAAT+GGG 0.403538 2.1:+44789246 MS.gene98515:CDS
GGTTGAACTGCAGTTGTTAC+CGG 0.408018 2.1:-44791231 None:intergenic
AATCATCAACTTCCTGTTCT+GGG 0.413052 2.1:+44791334 MS.gene98515:CDS
GAGACAAGAAGCACTTATCT+AGG 0.423504 2.1:+44789004 MS.gene98515:CDS
GGGTGCAAGTGTGTAAATTT+AGG 0.429032 2.1:-44789162 None:intergenic
TTCTGAACAACGATTCCAAT+GGG 0.429337 2.1:+44790525 MS.gene98515:CDS
TGAGAAATTAACAGATGATC+AGG 0.435117 2.1:+44790711 MS.gene98515:intron
AGAATTGGTATCTAACTCTA+TGG 0.436678 2.1:+44791004 MS.gene98515:CDS
GATCTCTGCTGTGTAAATCT+TGG 0.442124 2.1:-44790213 None:intergenic
CCTAACATCACCTTTCCTAA+TGG 0.442699 2.1:-44788923 None:intergenic
ACATGAACATGATGCAGAAT+TGG 0.463393 2.1:+44790989 MS.gene98515:CDS
AGGCTTGGAGAGCGAGGTGG+TGG 0.470187 2.1:-44787765 None:intergenic
AAAGATGAAATTATTGAGGC+TGG 0.470276 2.1:+44790248 MS.gene98515:CDS
GGAGCACCTTTACTCTTCAC+AGG 0.470733 2.1:-44790748 None:intergenic
TAAATTGGCTGCATTTGCAT+TGG 0.473815 2.1:-44791285 None:intergenic
GTATTCTACTTCACTGGAAT+CGG 0.474179 2.1:-44788650 None:intergenic
ATCAGAATCCATTTCCCCAT+TGG 0.476697 2.1:-44790540 None:intergenic
AAGAATTTCATCAGAGGCAA+TGG 0.477228 2.1:-44788830 None:intergenic
ATCTGTGTATTCTACTTCAC+TGG 0.479751 2.1:-44788656 None:intergenic
GGGATATATGGTTGCTCAGA+AGG 0.480775 2.1:+44789266 MS.gene98515:CDS
TCAATCAACAATGCATTAGT+AGG 0.482447 2.1:+44788784 MS.gene98515:CDS
TTGTGCCAAGAGCCCAGAAC+AGG 0.484522 2.1:-44791346 None:intergenic
TGGCGCTGCTGGGTCGCACG+TGG 0.486275 2.1:-44787730 None:intergenic
GCAAGTGTGTAAATTTAGGT+GGG 0.497265 2.1:-44789158 None:intergenic
TCATACTGCAAGGCATTGTT+CGG 0.499503 2.1:+44790831 MS.gene98515:CDS
GGTGGTGGACGGAGTGAAGA+TGG 0.501161 2.1:-44787750 None:intergenic
TTGCGAAAATATCGTGAGAA+AGG 0.510344 2.1:+44790323 MS.gene98515:CDS
CACCTCGCTCTCCAAGCCTC+AGG 0.510859 2.1:+44787769 MS.gene98515:CDS
ATTTGCATTGGATTAATAGC+AGG 0.513071 2.1:-44791273 None:intergenic
GATGCTGAAGATGATGTTGA+TGG 0.520081 2.1:+44788715 MS.gene98515:CDS
GAAAGAAGAGGCAACGGAGT+GGG 0.522053 2.1:-44787690 None:intergenic
CGGCGTCCAAACAATCTTTG+TGG 0.524396 2.1:-44788630 None:intergenic
CATATATCCCATTATATGAC+AGG 0.525157 2.1:-44789253 None:intergenic
CAAGCAAAAGAAATATAAAG+AGG 0.527664 2.1:+44791170 MS.gene98515:CDS
AGTTAAAGATGAAATTATTG+AGG 0.530146 2.1:+44790244 MS.gene98515:CDS
CTTGATGCTCTTCAATCACA+TGG 0.535182 2.1:+44789222 MS.gene98515:CDS
TGCAAGTGTGTAAATTTAGG+TGG 0.535511 2.1:-44789159 None:intergenic
GTGATTGAAGAGCATCAAGT+TGG 0.536251 2.1:-44789218 None:intergenic
TGATTGAAGAGCATCAAGTT+GGG 0.536427 2.1:-44789217 None:intergenic
TATCGTTATGGAAGATGCAA+AGG 0.541216 2.1:+44788895 MS.gene98515:CDS
TGCATTAGTAGGTGAAAGGT+TGG 0.543116 2.1:+44788795 MS.gene98515:CDS
GAGAGAGAAAGAAGAGGCAA+CGG 0.543213 2.1:-44787696 None:intergenic
GCATTGGATTAATAGCAGGC+TGG 0.543520 2.1:-44791269 None:intergenic
GGAGTGAAGATGGCGCTGCT+GGG 0.543895 2.1:-44787740 None:intergenic
CCAATCCCTGTGAAGAGTAA+AGG 0.544969 2.1:+44790742 MS.gene98515:CDS
AGAAAGAAGAGGCAACGGAG+TGG 0.548447 2.1:-44787691 None:intergenic
AAGGGTGGATACGCTGATGT+AGG 0.558445 2.1:+44789285 MS.gene98515:CDS
TTGGAGAGCGAGGTGGTGGA+CGG 0.559403 2.1:-44787761 None:intergenic
TAGAAAACGAACCTGAGGCT+TGG 0.561009 2.1:-44787780 None:intergenic
AATGTTTGGTTATGACCCGT+TGG 0.566267 2.1:+44790480 MS.gene98515:CDS
GGCGCTGCTGGGTCGCACGT+GGG 0.568721 2.1:-44787729 None:intergenic
GAGTTTGTGTGCAACAAGCA+AGG 0.575972 2.1:+44788976 MS.gene98515:CDS
CTCAAGAGCAAAGAATGTGT+GGG 0.580226 2.1:+44790281 MS.gene98515:CDS
GTAGTGTCTAAATTTGAAGA+GGG 0.581617 2.1:+44789117 MS.gene98515:CDS
AGCATATAACATTGGATCGG+TGG 0.585153 2.1:-44789412 None:intergenic
CCCGAACAAATTGTGAAGCA+AGG 0.585769 2.1:+44789058 MS.gene98515:CDS
TTTCTGAACAACGATTCCAA+TGG 0.587464 2.1:+44790524 MS.gene98515:CDS
GGATATATGGTTGCTCAGAA+GGG 0.589834 2.1:+44789267 MS.gene98515:CDS
TGTAGTGTCTAAATTTGAAG+AGG 0.597171 2.1:+44789116 MS.gene98515:CDS
TGAGAAAGGCATTGAAAGAG+AGG 0.597237 2.1:+44790337 MS.gene98515:CDS
ACAATGCATTAGTAGGTGAA+AGG 0.599354 2.1:+44788791 MS.gene98515:CDS
CGCCATGAAGTCCATAATTG+GGG 0.600485 2.1:-44791308 None:intergenic
TGATGAATCAGTTCAACAAG+AGG 0.603374 2.1:+44788759 MS.gene98515:CDS
GATGTTAGGAGCAATAGTAG+TGG 0.605946 2.1:+44788937 MS.gene98515:CDS
CAAGTGTGTAAATTTAGGTG+GGG 0.607267 2.1:-44789157 None:intergenic
TCTCAAGAGCAAAGAATGTG+TGG 0.610833 2.1:+44790280 MS.gene98515:CDS
ATGCGTGATGTCATTAAAGA+CGG 0.612992 2.1:+44789348 MS.gene98515:CDS
TATATGGTTGCTCAGAAGGG+TGG 0.613989 2.1:+44789270 MS.gene98515:CDS
CGCAGGTGAGTCGTCAACAC+AGG 0.614146 2.1:-44790170 None:intergenic
TTCAGCATATAACATTGGAT+CGG 0.614583 2.1:-44789415 None:intergenic
GAGCACCTTTACTCTTCACA+GGG 0.616222 2.1:-44790747 None:intergenic
AACCTGAGGCTTGGAGAGCG+AGG 0.625854 2.1:-44787771 None:intergenic
AAGTTTAAGAATTTCATCAG+AGG 0.626746 2.1:-44788836 None:intergenic
GCACACGAGAGAGAAAGAAG+AGG 0.627682 2.1:-44787702 None:intergenic
AAATTAACAGATGATCAGGT+AGG 0.630827 2.1:+44790715 MS.gene98515:intron
TCGTATTCAGCATATAACAT+TGG 0.632685 2.1:-44789420 None:intergenic
TGTAGACTATTTGAGACACG+TGG 0.633840 2.1:+44790398 MS.gene98515:CDS
GGCTGGAACACATGAACAGT+AGG 0.634224 2.1:-44791252 None:intergenic
TCAAGAGCAAAGAATGTGTG+GGG 0.636452 2.1:+44790282 MS.gene98515:CDS
GAAGTACAAGTCATACTGCA+AGG 0.642891 2.1:+44790821 MS.gene98515:CDS
CCCAATTATGGACTTCATGG+CGG 0.651938 2.1:+44791309 MS.gene98515:CDS
GATGAATCAGTTCAACAAGA+GGG 0.669122 2.1:+44788760 MS.gene98515:CDS
TAGTGTCTAAATTTGAAGAG+GGG 0.673727 2.1:+44789118 MS.gene98515:CDS
CATCACTCTCAATCGAACGC+AGG 0.676080 2.1:-44790187 None:intergenic
CTGAGGCTTGGAGAGCGAGG+TGG 0.685584 2.1:-44787768 None:intergenic
TCTGAACAACGATTCCAATG+GGG 0.705472 2.1:+44790526 MS.gene98515:CDS
CAAGAGCAAAGAATGTGTGG+GGG 0.709093 2.1:+44790283 MS.gene98515:CDS
GTAGACTATTTGAGACACGT+GGG 0.732024 2.1:+44790399 MS.gene98515:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATTTTCGAAATTTTA+GGG + chr2.1:44788594-44788613 MS.gene98515:intron 10.0%
!!! GTTTAAATTTTCGAAATTTT+AGG + chr2.1:44788593-44788612 MS.gene98515:intron 15.0%
!!! TATGAATTTTATTATCGTTA+TGG + chr2.1:44788883-44788902 MS.gene98515:CDS 15.0%
!! AAAAAAGAATGGTGTATTTA+GGG + chr2.1:44790628-44790647 MS.gene98515:intron 20.0%
!! AAAAATAAAAGGAAACCTAA+TGG + chr2.1:44791132-44791151 MS.gene98515:CDS 20.0%
!! AACCCTAATTAAAAAGAAAA+AGG - chr2.1:44787839-44787858 None:intergenic 20.0%
!! ACTAGGTTATAACAAAAAAA+AGG + chr2.1:44788227-44788246 MS.gene98515:intron 20.0%
!! AGTTAAAGATGAAATTATTG+AGG + chr2.1:44790244-44790263 MS.gene98515:CDS 20.0%
!! GAAATTCTTAAACTTGAATT+TGG + chr2.1:44788844-44788863 MS.gene98515:CDS 20.0%
!! GTTATATACTTGTTTAGTAT+TGG + chr2.1:44788261-44788280 MS.gene98515:intron 20.0%
!! TGAATGTAATAGTGTTTAAT+TGG + chr2.1:44787882-44787901 MS.gene98515:intron 20.0%
!!! AATTGGAGATTATTTTTTTG+GGG + chr2.1:44788005-44788024 MS.gene98515:intron 20.0%
!!! ATTTATGCATAATTTTGAAC+AGG + chr2.1:44790088-44790107 MS.gene98515:intron 20.0%
!!! CAATTGGAGATTATTTTTTT+GGG + chr2.1:44788004-44788023 MS.gene98515:intron 20.0%
!!! CTCCTTTTTCTTTTTAATTA+GGG + chr2.1:44787834-44787853 MS.gene98515:intron 20.0%
!!! TAATTAGGGTTTTTTGATTT+TGG + chr2.1:44787848-44787867 MS.gene98515:intron 20.0%
!!! TCTCCTTTTTCTTTTTAATT+AGG + chr2.1:44787833-44787852 MS.gene98515:intron 20.0%
!!! TTTCCATACATTCTAAAAAA+CGG - chr2.1:44789674-44789693 None:intergenic 20.0%
!!! TTTTGCTTGCAATAATATAT+TGG + chr2.1:44788439-44788458 MS.gene98515:intron 20.0%
! AAGTTTAAGAATTTCATCAG+AGG - chr2.1:44788839-44788858 None:intergenic 25.0%
! ACAAAAAAAACATGACAACA+TGG - chr2.1:44790428-44790447 None:intergenic 25.0%
! ATGAACTTGAAGAAAATGAT+TGG + chr2.1:44789919-44789938 MS.gene98515:intron 25.0%
! ATTATGAAATTGGCATTATG+AGG + chr2.1:44787912-44787931 MS.gene98515:intron 25.0%
! CAAAAAAGAATGGTGTATTT+AGG + chr2.1:44790627-44790646 MS.gene98515:intron 25.0%
! CAAGCAAAAGAAATATAAAG+AGG + chr2.1:44791170-44791189 MS.gene98515:CDS 25.0%
! GTCATTCACAGAAAAATAAA+AGG + chr2.1:44791121-44791140 MS.gene98515:intron 25.0%
! TATTTACGTGATAAGTTCTT+TGG + chr2.1:44789984-44790003 MS.gene98515:intron 25.0%
! TGAACTTGAAGAAAATGATT+GGG + chr2.1:44789920-44789939 MS.gene98515:intron 25.0%
! TGGTTGATTGATTATGAAAT+TGG + chr2.1:44787902-44787921 MS.gene98515:intron 25.0%
! TTCTTTAAGCCAAAAAGAAA+AGG + chr2.1:44791031-44791050 MS.gene98515:CDS 25.0%
!! AAGAATGAAAAGTCTGTTTT+GGG + chr2.1:44789458-44789477 MS.gene98515:intron 25.0%
!! AATCACAAAATCGCAAATTT+TGG - chr2.1:44787981-44788000 None:intergenic 25.0%
!! AATGTACTCAAATTTTACAC+CGG + chr2.1:44789857-44789876 MS.gene98515:intron 25.0%
!! ACAAACATACCTTTTCTTTT+TGG - chr2.1:44791043-44791062 None:intergenic 25.0%
!! ATAAGCAAGTTAATTTTTGC+AGG + chr2.1:44790950-44790969 MS.gene98515:intron 25.0%
!! ATATACTTGTTTAGTATTGG+AGG + chr2.1:44788264-44788283 MS.gene98515:intron 25.0%
!! TGCCATTTATATGTACATTT+GGG + chr2.1:44788344-44788363 MS.gene98515:intron 25.0%
!!! AAATACACCATTCTTTTTTG+AGG - chr2.1:44790627-44790646 None:intergenic 25.0%
!!! AGGTCTGATTATTTTTGTTT+TGG + chr2.1:44789495-44789514 MS.gene98515:intron 25.0%
!!! GCAATTGGAGATTATTTTTT+TGG + chr2.1:44788003-44788022 MS.gene98515:intron 25.0%
!!! TAATTTGGTGTTATTGTTGT+TGG + chr2.1:44788042-44788061 MS.gene98515:intron 25.0%
!!! TCATGTTTTTTTTGTGATGA+AGG + chr2.1:44790433-44790452 MS.gene98515:CDS 25.0%
AAACAATCGAGTCATATAAG+TGG + chr2.1:44789640-44789659 MS.gene98515:intron 30.0%
AAAGAAGCCTCAAAAAAGAA+TGG + chr2.1:44790617-44790636 MS.gene98515:intron 30.0%
AAAGATGAAATTATTGAGGC+TGG + chr2.1:44790248-44790267 MS.gene98515:CDS 30.0%
AAATTAACAGATGATCAGGT+AGG + chr2.1:44790715-44790734 MS.gene98515:intron 30.0%
AACAATCGAGTCATATAAGT+GGG + chr2.1:44789641-44789660 MS.gene98515:intron 30.0%
AAGACGTAGATTTCATAGTT+TGG - chr2.1:44788508-44788527 None:intergenic 30.0%
AATCAGAACCTGTCATATAA+TGG + chr2.1:44789245-44789264 MS.gene98515:CDS 30.0%
AGAATTGGTATCTAACTCTA+TGG + chr2.1:44791004-44791023 MS.gene98515:CDS 30.0%
AGCACAATTTACAGAGATTT+CGG + chr2.1:44791194-44791213 MS.gene98515:CDS 30.0%
ATCAGAACCTGTCATATAAT+GGG + chr2.1:44789246-44789265 MS.gene98515:CDS 30.0%
ATGATTGAAGTTGCTAGATT+TGG + chr2.1:44790563-44790582 MS.gene98515:CDS 30.0%
ATTTGCATTGGATTAATAGC+AGG - chr2.1:44791276-44791295 None:intergenic 30.0%
CAAATATAATGGTCTGTGAA+TGG - chr2.1:44789599-44789618 None:intergenic 30.0%
CACAATGAACCAAAACAATA+TGG - chr2.1:44788118-44788137 None:intergenic 30.0%
CACCAAATTAGTACCAATTT+CGG - chr2.1:44788032-44788051 None:intergenic 30.0%
CACCCAAATGTACATATAAA+TGG - chr2.1:44788349-44788368 None:intergenic 30.0%
CATATATCCCATTATATGAC+AGG - chr2.1:44789256-44789275 None:intergenic 30.0%
CATTTATATGTACATTTGGG+TGG + chr2.1:44788347-44788366 MS.gene98515:intron 30.0%
GAACTTATCACGTAAATATG+CGG - chr2.1:44789982-44790001 None:intergenic 30.0%
GTAGTGTCTAAATTTGAAGA+GGG + chr2.1:44789117-44789136 MS.gene98515:CDS 30.0%
TAGTGTCTAAATTTGAAGAG+GGG + chr2.1:44789118-44789137 MS.gene98515:CDS 30.0%
TAGTTATTAAAGCAGACACT+AGG + chr2.1:44788210-44788229 MS.gene98515:intron 30.0%
TCAATCAACAATGCATTAGT+AGG + chr2.1:44788784-44788803 MS.gene98515:CDS 30.0%
TCGTATTCAGCATATAACAT+TGG - chr2.1:44789423-44789442 None:intergenic 30.0%
TGAGAAATTAACAGATGATC+AGG + chr2.1:44790711-44790730 MS.gene98515:intron 30.0%
TGATCACATACCAAAATGTT+TGG + chr2.1:44790466-44790485 MS.gene98515:CDS 30.0%
TGTAAAGAAAACACCATTTC+TGG + chr2.1:44789818-44789837 MS.gene98515:intron 30.0%
TGTAGTGTCTAAATTTGAAG+AGG + chr2.1:44789116-44789135 MS.gene98515:CDS 30.0%
TTCAGCATATAACATTGGAT+CGG - chr2.1:44789418-44789437 None:intergenic 30.0%
TTGGTTCATTGTGTAATTCA+AGG + chr2.1:44788125-44788144 MS.gene98515:intron 30.0%
! ATCCGTTGTGTATATTTTCT+GGG + chr2.1:44789565-44789584 MS.gene98515:intron 30.0%
! CGATTTTGTGATTATGCAAT+TGG + chr2.1:44787988-44788007 MS.gene98515:intron 30.0%
! CTGCCATTTATATGTACATT+TGG + chr2.1:44788343-44788362 MS.gene98515:intron 30.0%
! CTGTCATATAATGGGATATA+TGG + chr2.1:44789254-44789273 MS.gene98515:CDS 30.0%
! GAAGAATGAAAAGTCTGTTT+TGG + chr2.1:44789457-44789476 MS.gene98515:intron 30.0%
! TATCCGTTGTGTATATTTTC+TGG + chr2.1:44789564-44789583 MS.gene98515:intron 30.0%
!! CAAAACAATATGGCTTGTTT+GGG - chr2.1:44788108-44788127 None:intergenic 30.0%
!!! GAACCGTTTTTTAGAATGTA+TGG + chr2.1:44789668-44789687 MS.gene98515:intron 30.0%
AACACAATTGAGCTACTTCA+AGG + chr2.1:44788179-44788198 MS.gene98515:intron 35.0%
AAGAATTTCATCAGAGGCAA+TGG - chr2.1:44788833-44788852 None:intergenic 35.0%
AATCATCAACTTCCTGTTCT+GGG + chr2.1:44791334-44791353 MS.gene98515:CDS 35.0%
AATGAGGGAAGCTATTAAAC+AGG + chr2.1:44789734-44789753 MS.gene98515:intron 35.0%
ACAATGCATTAGTAGGTGAA+AGG + chr2.1:44788791-44788810 MS.gene98515:CDS 35.0%
ACATGAACATGATGCAGAAT+TGG + chr2.1:44790989-44791008 MS.gene98515:CDS 35.0%
AGTCCATAATTGGGGTAAAT+TGG - chr2.1:44791303-44791322 None:intergenic 35.0%
AGTGTTGTGAAACCATTGTT+AGG + chr2.1:44787943-44787962 MS.gene98515:intron 35.0%
ATATAATGGTCTGTGAATGG+TGG - chr2.1:44789596-44789615 None:intergenic 35.0%
ATCTGTGTATTCTACTTCAC+TGG - chr2.1:44788659-44788678 None:intergenic 35.0%
ATGCGTGATGTCATTAAAGA+CGG + chr2.1:44789348-44789367 MS.gene98515:CDS 35.0%
ATTTAGGTGGGGTTAATTCA+TGG - chr2.1:44789149-44789168 None:intergenic 35.0%
CAAGTGTGTAAATTTAGGTG+GGG - chr2.1:44789160-44789179 None:intergenic 35.0%
CACCCAGAAAATATACACAA+CGG - chr2.1:44789570-44789589 None:intergenic 35.0%
CTTGTGCTAACATTACCATT+AGG - chr2.1:44791150-44791169 None:intergenic 35.0%
GAATACGATGTCAACATTGA+TGG + chr2.1:44789435-44789454 MS.gene98515:intron 35.0%
GATGAATCAGTTCAACAAGA+GGG + chr2.1:44788760-44788779 MS.gene98515:CDS 35.0%
GCAAGTGTGTAAATTTAGGT+GGG - chr2.1:44789161-44789180 None:intergenic 35.0%
GTACGTTACAAAGCCAAAAA+GGG + chr2.1:44789087-44789106 MS.gene98515:CDS 35.0%
GTAGATTTCATAGTTTGGCT+AGG - chr2.1:44788503-44788522 None:intergenic 35.0%
GTAGCATTCTTCTTCTTCTT+TGG - chr2.1:44790772-44790791 None:intergenic 35.0%
GTATTCTACTTCACTGGAAT+CGG - chr2.1:44788653-44788672 None:intergenic 35.0%
GTCCGAAATTGGTACTAATT+TGG + chr2.1:44788027-44788046 MS.gene98515:intron 35.0%
GTGATACTGAATACTCTACT+CGG + chr2.1:44790686-44790705 MS.gene98515:intron 35.0%
GTGTTGTGAAACCATTGTTA+GGG + chr2.1:44787944-44787963 MS.gene98515:intron 35.0%
TAAATTGGCTGCATTTGCAT+TGG - chr2.1:44791288-44791307 None:intergenic 35.0%
TACGTTACAAAGCCAAAAAG+GGG + chr2.1:44789088-44789107 MS.gene98515:CDS 35.0%
TATAAATGGCAGCACACAAA+TGG - chr2.1:44788335-44788354 None:intergenic 35.0%
TATCGTTATGGAAGATGCAA+AGG + chr2.1:44788895-44788914 MS.gene98515:CDS 35.0%
TCTTCCTAAGACAAGAAAGA+AGG - chr2.1:44788416-44788435 None:intergenic 35.0%
TCTTTCTTGTCTTAGGAAGA+TGG + chr2.1:44788416-44788435 MS.gene98515:intron 35.0%
TGATGAATCAGTTCAACAAG+AGG + chr2.1:44788759-44788778 MS.gene98515:CDS 35.0%
TGCAAGTGTGTAAATTTAGG+TGG - chr2.1:44789162-44789181 None:intergenic 35.0%
TGTACGTTACAAAGCCAAAA+AGG + chr2.1:44789086-44789105 MS.gene98515:CDS 35.0%
TGTTGGTATGAATCTGTTGA+GGG + chr2.1:44788059-44788078 MS.gene98515:intron 35.0%
TTCTGAACAACGATTCCAAT+GGG + chr2.1:44790525-44790544 MS.gene98515:CDS 35.0%
TTGCGAAAATATCGTGAGAA+AGG + chr2.1:44790323-44790342 MS.gene98515:CDS 35.0%
TTGTTGGTATGAATCTGTTG+AGG + chr2.1:44788058-44788077 MS.gene98515:intron 35.0%
TTTCATAGTTTGGCTAGGTA+TGG - chr2.1:44788498-44788517 None:intergenic 35.0%
TTTCTGAACAACGATTCCAA+TGG + chr2.1:44790524-44790543 MS.gene98515:CDS 35.0%
! AAAGAAAACACCATTTCTGG+AGG + chr2.1:44789821-44789840 MS.gene98515:intron 35.0%
! AAAGGTTTTGCCATTAGGAA+AGG + chr2.1:44788913-44788932 MS.gene98515:CDS 35.0%
! AAGAAAACACCATTTCTGGA+GGG + chr2.1:44789822-44789841 MS.gene98515:intron 35.0%
! CAGAGATTTTACGATACAGT+GGG - chr2.1:44789185-44789204 None:intergenic 35.0%
! CCAAACAAGCCATATTGTTT+TGG + chr2.1:44788106-44788125 MS.gene98515:intron 35.0%
! TCAGAGATTTTACGATACAG+TGG - chr2.1:44789186-44789205 None:intergenic 35.0%
! TTGGCACAAGTCATGAATTT+TGG + chr2.1:44791360-44791379 MS.gene98515:CDS 35.0%
! TTTTCGCAATGTGTAAACCA+TGG - chr2.1:44790312-44790331 None:intergenic 35.0%
! TTTTTGCAGGATACACAGAA+CGG + chr2.1:44790963-44790982 MS.gene98515:intron 35.0%
!! CATCTGTTACAACTGCTTTT+GGG - chr2.1:44789704-44789723 None:intergenic 35.0%
!! CCAAAACAATATGGCTTGTT+TGG - chr2.1:44788109-44788128 None:intergenic 35.0%
!! TGATTGAAGAGCATCAAGTT+GGG - chr2.1:44789220-44789239 None:intergenic 35.0%
!!! ATTTTTTTGGGGTCCGAAAT+TGG + chr2.1:44788016-44788035 MS.gene98515:intron 35.0%
!!! TCGAAATTTTAGGGTTGTCA+TGG + chr2.1:44788603-44788622 MS.gene98515:intron 35.0%
!!! TTTTTGTTTTGGCGACGTTT+TGG + chr2.1:44789506-44789525 MS.gene98515:intron 35.0%
AAGACATATGTCAGAGCGAA+AGG + chr2.1:44790053-44790072 MS.gene98515:intron 40.0%
AATGTTTGGTTATGACCCGT+TGG + chr2.1:44790480-44790499 MS.gene98515:CDS 40.0%
AGCACCTTCTTTCTTGTCTT+AGG + chr2.1:44788409-44788428 MS.gene98515:intron 40.0%
AGCATATAACATTGGATCGG+TGG - chr2.1:44789415-44789434 None:intergenic 40.0%
AGTGTTAGAAAACGAACCTG+AGG - chr2.1:44787788-44787807 None:intergenic 40.0%
ATAAGCGATGAGATGCATCA+GGG - chr2.1:44789764-44789783 None:intergenic 40.0%
ATCAGAATCCATTTCCCCAT+TGG - chr2.1:44790543-44790562 None:intergenic 40.0%
ATTGGAGGCAACAATTACGT+TGG + chr2.1:44788279-44788298 MS.gene98515:intron 40.0%
CAAAACTCCTCAAATTGCTC+CGG - chr2.1:44789879-44789898 None:intergenic 40.0%
CAACGCAACGGCAAATATAA+TGG - chr2.1:44789610-44789629 None:intergenic 40.0%
CAGCCAATTTACCCCAATTA+TGG + chr2.1:44791297-44791316 MS.gene98515:CDS 40.0%
CCAAAAGCAGTTGTAACAGA+TGG + chr2.1:44789702-44789721 MS.gene98515:intron 40.0%
CCACATCAAAACCCTAACAA+TGG - chr2.1:44787958-44787977 None:intergenic 40.0%
CCATTAGGAAAGGTGATGTT+AGG + chr2.1:44788923-44788942 MS.gene98515:CDS 40.0%
CCTAACATCACCTTTCCTAA+TGG - chr2.1:44788926-44788945 None:intergenic 40.0%
CTCAAGAGCAAAGAATGTGT+GGG + chr2.1:44790281-44790300 MS.gene98515:CDS 40.0%
CTTGATGCTCTTCAATCACA+TGG + chr2.1:44789222-44789241 MS.gene98515:CDS 40.0%
GAAGTACAAGTCATACTGCA+AGG + chr2.1:44790821-44790840 MS.gene98515:CDS 40.0%
GAATCATCAACTTCCTGTTC+TGG + chr2.1:44791333-44791352 MS.gene98515:CDS 40.0%
GATAGCTTCACATTGAGATG+TGG - chr2.1:44790021-44790040 None:intergenic 40.0%
GATCTCTGCTGTGTAAATCT+TGG - chr2.1:44790216-44790235 None:intergenic 40.0%
GATGCTGAAGATGATGTTGA+TGG + chr2.1:44788715-44788734 MS.gene98515:CDS 40.0%
GATGTTAGGAGCAATAGTAG+TGG + chr2.1:44788937-44788956 MS.gene98515:CDS 40.0%
GGAACACCACAAAGATTGTT+TGG + chr2.1:44788624-44788643 MS.gene98515:CDS 40.0%
GGATATATGGTTGCTCAGAA+GGG + chr2.1:44789267-44789286 MS.gene98515:CDS 40.0%
GGGTGCAAGTGTGTAAATTT+AGG - chr2.1:44789165-44789184 None:intergenic 40.0%
TACCCCAATTATGGACTTCA+TGG + chr2.1:44791306-44791325 MS.gene98515:CDS 40.0%
TATATTTGCCGTTGCGTTGT+TGG + chr2.1:44789611-44789630 MS.gene98515:intron 40.0%
TCAAGAGCAAAGAATGTGTG+GGG + chr2.1:44790282-44790301 MS.gene98515:CDS 40.0%
TCTCAAGAGCAAAGAATGTG+TGG + chr2.1:44790280-44790299 MS.gene98515:CDS 40.0%
TCTGAACAACGATTCCAATG+GGG + chr2.1:44790526-44790545 MS.gene98515:CDS 40.0%
TGAAATCTACGTCTTGTGCT+AGG + chr2.1:44788513-44788532 MS.gene98515:intron 40.0%
TGCATTAGTAGGTGAAAGGT+TGG + chr2.1:44788795-44788814 MS.gene98515:CDS 40.0%
TTTCCAAAACCCTCCAGAAA+TGG - chr2.1:44789834-44789853 None:intergenic 40.0%
! CACTACATATCTCCCCTTTT+TGG - chr2.1:44789103-44789122 None:intergenic 40.0%
! CCATCTGTTACAACTGCTTT+TGG - chr2.1:44789705-44789724 None:intergenic 40.0%
! CCTTGCTTCACAATTTGTTC+GGG - chr2.1:44789061-44789080 None:intergenic 40.0%
! CGGGTCATAACCAAACATTT+TGG - chr2.1:44790479-44790498 None:intergenic 40.0%
! CTTTTGCGTTCTTTGTCCAA+CGG - chr2.1:44790499-44790518 None:intergenic 40.0%
! GATGCAAAGGTTTTGCCATT+AGG + chr2.1:44788908-44788927 MS.gene98515:CDS 40.0%
! GCACAAGTCATGAATTTTGG+TGG + chr2.1:44791363-44791382 MS.gene98515:CDS 40.0%
! GCCTTGCTTCACAATTTGTT+CGG - chr2.1:44789062-44789081 None:intergenic 40.0%
! GTAGACTATTTGAGACACGT+GGG + chr2.1:44790399-44790418 MS.gene98515:CDS 40.0%
! TGTAGACTATTTGAGACACG+TGG + chr2.1:44790398-44790417 MS.gene98515:CDS 40.0%
! TTTTACACCGGAGCAATTTG+AGG + chr2.1:44789869-44789888 MS.gene98515:intron 40.0%
! TTTTGCGTTCTTTGTCCAAC+GGG - chr2.1:44790498-44790517 None:intergenic 40.0%
!! AAAAGTCTGTTTTGGGCTGA+TGG + chr2.1:44789465-44789484 MS.gene98515:intron 40.0%
!! AAAGTCTGTTTTGGGCTGAT+GGG + chr2.1:44789466-44789485 MS.gene98515:intron 40.0%
!! AGATGGTGATGGATCAATGA+GGG + chr2.1:44789719-44789738 MS.gene98515:intron 40.0%
!! CCATTGTTAGGGTTTTGATG+TGG + chr2.1:44787955-44787974 MS.gene98515:intron 40.0%
!! GAGACAAGAAGCACTTATCT+AGG + chr2.1:44789004-44789023 MS.gene98515:CDS 40.0%
!! GTCATGAATTTTGGTGGTCA+TGG + chr2.1:44791369-44791388 MS.gene98515:CDS 40.0%
!! GTGATTGAAGAGCATCAAGT+TGG - chr2.1:44789221-44789240 None:intergenic 40.0%
!! TCATACTGCAAGGCATTGTT+CGG + chr2.1:44790831-44790850 MS.gene98515:CDS 40.0%
!! TGAGAAAGGCATTGAAAGAG+AGG + chr2.1:44790337-44790356 MS.gene98515:CDS 40.0%
AACCCCAGCGTATATGTTAC+AGG - chr2.1:44788374-44788393 None:intergenic 45.0%
ACCCCAGCGTATATGTTACA+GGG - chr2.1:44788373-44788392 None:intergenic 45.0%
ACCGCCATGAAGTCCATAAT+TGG - chr2.1:44791313-44791332 None:intergenic 45.0%
ATACGCGAACAAGTCACTGT+GGG + chr2.1:44789953-44789972 MS.gene98515:intron 45.0%
CAACGATTCCAATGGGGAAA+TGG + chr2.1:44790532-44790551 MS.gene98515:CDS 45.0%
CAAGAGCAAAGAATGTGTGG+GGG + chr2.1:44790283-44790302 MS.gene98515:CDS 45.0%
CATAAGCGATGAGATGCATC+AGG - chr2.1:44789765-44789784 None:intergenic 45.0%
CCAATCCCTGTGAAGAGTAA+AGG + chr2.1:44790742-44790761 MS.gene98515:CDS 45.0%
CCCAATTATGGACTTCATGG+CGG + chr2.1:44791309-44791328 MS.gene98515:CDS 45.0%
CCCGAACAAATTGTGAAGCA+AGG + chr2.1:44789058-44789077 MS.gene98515:CDS 45.0%
CCGCCATGAAGTCCATAATT+GGG - chr2.1:44791312-44791331 None:intergenic 45.0%
CCTTTACTCTTCACAGGGAT+TGG - chr2.1:44790745-44790764 None:intergenic 45.0%
CGCCATGAAGTCCATAATTG+GGG - chr2.1:44791311-44791330 None:intergenic 45.0%
GAGAGAGAAAGAAGAGGCAA+CGG - chr2.1:44787699-44787718 None:intergenic 45.0%
GAGCACCTTTACTCTTCACA+GGG - chr2.1:44790750-44790769 None:intergenic 45.0%
GAGTTTGTGTGCAACAAGCA+AGG + chr2.1:44788976-44788995 MS.gene98515:CDS 45.0%
GCAGTTGTAACAGATGGTGA+TGG + chr2.1:44789708-44789727 MS.gene98515:intron 45.0%
GCATTGGATTAATAGCAGGC+TGG - chr2.1:44791272-44791291 None:intergenic 45.0%
GGGATATATGGTTGCTCAGA+AGG + chr2.1:44789266-44789285 MS.gene98515:CDS 45.0%
GGTATGAATCTGTTGAGGGT+TGG + chr2.1:44788063-44788082 MS.gene98515:intron 45.0%
GGTTGAACTGCAGTTGTTAC+CGG - chr2.1:44791234-44791253 None:intergenic 45.0%
TAGAAAACGAACCTGAGGCT+TGG - chr2.1:44787783-44787802 None:intergenic 45.0%
TATATGGTTGCTCAGAAGGG+TGG + chr2.1:44789270-44789289 MS.gene98515:CDS 45.0%
TTCATCCTCCAACAACGCAA+CGG - chr2.1:44789622-44789641 None:intergenic 45.0%
! CGGAGCAATTTGAGGAGTTT+TGG + chr2.1:44789877-44789896 MS.gene98515:intron 45.0%
!! ACACCATTTCTGGAGGGTTT+TGG + chr2.1:44789828-44789847 MS.gene98515:intron 45.0%
!! CAGATGGTGATGGATCAATG+AGG + chr2.1:44789718-44789737 MS.gene98515:intron 45.0%
AAGGGTGGATACGCTGATGT+AGG + chr2.1:44789285-44789304 MS.gene98515:CDS 50.0%
AGAAAGAAGAGGCAACGGAG+TGG - chr2.1:44787694-44787713 None:intergenic 50.0%
AGAATGTGTGGGGGATACCA+TGG + chr2.1:44790292-44790311 MS.gene98515:CDS 50.0%
ATTTGCCGTTGCGTTGTTGG+AGG + chr2.1:44789614-44789633 MS.gene98515:intron 50.0%
CATACGCGAACAAGTCACTG+TGG + chr2.1:44789952-44789971 MS.gene98515:intron 50.0%
CATCACTCTCAATCGAACGC+AGG - chr2.1:44790190-44790209 None:intergenic 50.0%
CATCTCATCGCTTATGTGCC+TGG + chr2.1:44789769-44789788 MS.gene98515:intron 50.0%
CGCATTCTTATGCAGATGCC+AGG - chr2.1:44789790-44789809 None:intergenic 50.0%
CGGCGTCCAAACAATCTTTG+TGG - chr2.1:44788633-44788652 None:intergenic 50.0%
GAAAGAAGAGGCAACGGAGT+GGG - chr2.1:44787693-44787712 None:intergenic 50.0%
GCACACGAGAGAGAAAGAAG+AGG - chr2.1:44787705-44787724 None:intergenic 50.0%
GCCCTGTAACATATACGCTG+GGG + chr2.1:44788369-44788388 MS.gene98515:intron 50.0%
GGCCCTGTAACATATACGCT+GGG + chr2.1:44788368-44788387 MS.gene98515:intron 50.0%
GGCTGGAACACATGAACAGT+AGG - chr2.1:44791255-44791274 None:intergenic 50.0%
TGGCCCTGTAACATATACGC+TGG + chr2.1:44788367-44788386 MS.gene98515:intron 50.0%
TTTGGGCTGATGGGAGTAGT+AGG + chr2.1:44789475-44789494 MS.gene98515:intron 50.0%
! AACTTCCTGTTCTGGGCTCT+TGG + chr2.1:44791341-44791360 MS.gene98515:CDS 50.0%
! GGAGCACCTTTACTCTTCAC+AGG - chr2.1:44790751-44790770 None:intergenic 50.0%
!! TTCGGAGACAGCTGATTTGC+CGG + chr2.1:44791212-44791231 MS.gene98515:CDS 50.0%
TTGTGCCAAGAGCCCAGAAC+AGG - chr2.1:44791349-44791368 None:intergenic 55.0%
AACCTGAGGCTTGGAGAGCG+AGG - chr2.1:44787774-44787793 None:intergenic 60.0%
CGCAGGTGAGTCGTCAACAC+AGG - chr2.1:44790173-44790192 None:intergenic 60.0%
GGAGTGAAGATGGCGCTGCT+GGG - chr2.1:44787743-44787762 None:intergenic 60.0%
!! GGTGGTGGACGGAGTGAAGA+TGG - chr2.1:44787753-44787772 None:intergenic 60.0%
!! TTGGAGAGCGAGGTGGTGGA+CGG - chr2.1:44787764-44787783 None:intergenic 60.0%
AGGCTTGGAGAGCGAGGTGG+TGG - chr2.1:44787768-44787787 None:intergenic 65.0%
CACCTCGCTCTCCAAGCCTC+AGG + chr2.1:44787769-44787788 MS.gene98515:CDS 65.0%
CGGAGTGAAGATGGCGCTGC+TGG - chr2.1:44787744-44787763 None:intergenic 65.0%
CTGAGGCTTGGAGAGCGAGG+TGG - chr2.1:44787771-44787790 None:intergenic 65.0%
GGCGCTGCTGGGTCGCACGT+GGG - chr2.1:44787732-44787751 None:intergenic 75.0%
TGGCGCTGCTGGGTCGCACG+TGG - chr2.1:44787733-44787752 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 44787684 44791422 44787684 ID=MS.gene98515
chr2.1 mRNA 44787684 44791422 44787684 ID=MS.gene98515.t1;Parent=MS.gene98515
chr2.1 exon 44787684 44787790 44787684 ID=MS.gene98515.t1.exon1;Parent=MS.gene98515.t1
chr2.1 CDS 44787684 44787790 44787684 ID=cds.MS.gene98515.t1;Parent=MS.gene98515.t1
chr2.1 exon 44788615 44789443 44788615 ID=MS.gene98515.t1.exon2;Parent=MS.gene98515.t1
chr2.1 CDS 44788615 44789443 44788615 ID=cds.MS.gene98515.t1;Parent=MS.gene98515.t1
chr2.1 exon 44790110 44790614 44790110 ID=MS.gene98515.t1.exon3;Parent=MS.gene98515.t1
chr2.1 CDS 44790110 44790614 44790110 ID=cds.MS.gene98515.t1;Parent=MS.gene98515.t1
chr2.1 exon 44790725 44790852 44790725 ID=MS.gene98515.t1.exon4;Parent=MS.gene98515.t1
chr2.1 CDS 44790725 44790852 44790725 ID=cds.MS.gene98515.t1;Parent=MS.gene98515.t1
chr2.1 exon 44790972 44791052 44790972 ID=MS.gene98515.t1.exon5;Parent=MS.gene98515.t1
chr2.1 CDS 44790972 44791052 44790972 ID=cds.MS.gene98515.t1;Parent=MS.gene98515.t1
chr2.1 exon 44791132 44791422 44791132 ID=MS.gene98515.t1.exon6;Parent=MS.gene98515.t1
chr2.1 CDS 44791132 44791422 44791132 ID=cds.MS.gene98515.t1;Parent=MS.gene98515.t1
Gene Sequence

>MS.gene98515

ATGCGACCCACTCCGTTGCCTCTTCTTTCTCTCTCGTGTGCGCGACCCACGTGCGACCCAGCAGCGCCATCTTCACTCCGTCCACCACCTCGCTCTCCAAGCCTCAGGTTCGTTTTCTAACACTCGACAGAACAATCTGAATGAATGAATCTCCTTTTTCTTTTTAATTAGGGTTTTTTGATTTTGGATTCTTTTATATGAATGTAATAGTGTTTAATTGGTTGATTGATTATGAAATTGGCATTATGAGGAATATATTAGTGTTGTGAAACCATTGTTAGGGTTTTGATGTGGCCAAAATTTGCGATTTTGTGATTATGCAATTGGAGATTATTTTTTTGGGGTCCGAAATTGGTACTAATTTGGTGTTATTGTTGTTGGTATGAATCTGTTGAGGGTTGGTGTTTTTGCTCTTGATATGCCCAAACAAGCCATATTGTTTTGGTTCATTGTGTAATTCAAGGACTGTTATTTCACTTTTCATATCAATCTTCTAACACAATTGAGCTACTTCAAGGATGTAGTGTAGTTATTAAAGCAGACACTAGGTTATAACAAAAAAAAGGTTTTCAACAATGTTATATACTTGTTTAGTATTGGAGGCAACAATTACGTTGGCATTCACTACATCTTATATTGTCTTTGTTTCCATTTGTGTGCTGCCATTTATATGTACATTTGGGTGGCCCTGTAACATATACGCTGGGGTTTTTGTTTGTTTTCTTAGCACCTTCTTTCTTGTCTTAGGAAGATGGTTTTGCTTGCAATAATATATTGGCTATTTAAAAAAAAAATATACATGAAATAGTTTCCATACCTAGCCAAACTATGAAATCTACGTCTTGTGCTAGGCTGCATCTTTTGAAATAATATTATGTTGTTTTAAAAAAAAAAAAAAACTCATGCTTTGTTTAAATTTTCGAAATTTTAGGGTTGTCATGGAACACCACAAAGATTGTTTGGACGCCGATTCCAGTGAAGTAGAATACACAGATGATTTATATGATGATGAAGAACATCACAGTTCGTCTGATGCTGAAGATGATGTTGATGGTAATGCTGCTGATGATGTTCATGATGAATCAGTTCAACAAGAGGGTTCAATCAACAATGCATTAGTAGGTGAAAGGTTGGTGAATGTAAATTCCATTGCCTCTGATGAAATTCTTAAACTTGAATTTGGCACTGTTGATGAAGCATATGAATTTTATTATCGTTATGGAAGATGCAAAGGTTTTGCCATTAGGAAAGGTGATGTTAGGAGCAATAGTAGTGGAATAATTACAATGAGAGAGTTTGTGTGCAACAAGCAAGGCTTAAGAGACAAGAAGCACTTATCTAGGAATGATAGAAAAAGAGATCATAAACGTATCACCCGAACAAATTGTGAAGCAAGGCTTCGTGTACGTTACAAAGCCAAAAAGGGGAGATATGTAGTGTCTAAATTTGAAGAGGGGCATAACCATGAATTAACCCCACCTAAATTTACACACTTGCACCCACTGTATCGTAAAATCTCTGAAGCAGATAGTGCCCAACTTGATGCTCTTCAATCACATGGAATCAGAACCTGTCATATAATGGGATATATGGTTGCTCAGAAGGGTGGATACGCTGATGTAGGATTTACTAAGAAAGATCTGTATAACTATTTTGATAAAAAGATGCGTGATGTCATTAAAGACGGTGATGTTGCTGCTGCTCTAAAGCATCTTAATGTGAAGTCTTCCACCGATCCAATGTTATATGCTGAATACGATGTCAACATTGATGGAAGAATGAAAAGTCTGTTTTGGGCTGATGGGAGTAGTAGGTCTGATTATTTTTGTTTTGGCGACGTTTTGGCGTTTGACGCAACGTACAAGAAGAACAAATACAACTATCCGTTGTGTATATTTTCTGGGTGTAACCACCATTCACAGACCATTATATTTGCCGTTGCGTTGTTGGAGGATGAAACAATCGAGTCATATAAGTGGGTCTTGAACCGTTTTTTAGAATGTATGGAAAATAAATTCCCAAAAGCAGTTGTAACAGATGGTGATGGATCAATGAGGGAAGCTATTAAACAGGTATTCCCTGATGCATCTCATCGCTTATGTGCCTGGCATCTGCATAAGAATGCGCAAGAAAATGTAAAGAAAACACCATTTCTGGAGGGTTTTGGAAAAGCAATGTACTCAAATTTTACACCGGAGCAATTTGAGGAGTTTTGGTCAGAGTTAATTCAGAATAATGAACTTGAAGAAAATGATTGGGTTAAGAAGACATACGCGAACAAGTCACTGTGGGCAACCGCATATTTACGTGATAAGTTCTTTGGACGTATTAGAACCACATCTCAATGTGAAGCTATCAATGCAATTGTCAAGACATATGTCAGAGCGAAAGGCAACATTTTTGAATTTATGCATAATTTTGAACAGGTTTTGAGAGATTACAGAAATAGTGAGCTTGCTGCTGAGTTTAAATCAAAATTCACAGAACCTGTGTTGACGACTCACCTGCGTTCGATTGAGAGTGATGCTGCCAAGATTTACACAGCAGAGATCTTTAAAGAAGTTAAAGATGAAATTATTGAGGCTGGTGCAGTAAGTCTCAAGAGCAAAGAATGTGTGGGGGATACCATGGTTTACACATTGCGAAAATATCGTGAGAAAGGCATTGAAAGAGAGGTTGTATACGATGCTGCAAGTTTAGAATTTCAGTGTTCGTGTAGACTATTTGAGACACGTGGGATTCCATGTTGTCATGTTTTTTTTGTGATGAAGGAAGAAGACATTGATCACATACCAAAATGTTTGGTTATGACCCGTTGGACAAAGAACGCAAAAGATGCATTTCTGAACAACGATTCCAATGGGGAAATGGATTCTGATATGATTGAAGTTGCTAGATTTGGTGCTTACTGTTCTGCTTTTACTGCATTCTGTAAAGAAGCCTCAAAAAAGAATGGTGTATTTAGGGACATAATGAAATTTTAAATCTTCAACAAAAGTATTGTGATACTGAATACTCTACTCGGTCTGAGAAATTAACAGATGATCAGGTAGGTGATCCAATCCCTGTGAAGAGTAAAGGTGCTCCAAAGAAGAAGAAGAATGCTACAAAAAGTGTCAGACACTGTTCAAAATGCAGAAGTACAAGTCATACTGCAAGGCATTGTTCGGTAATTTGTCTATATATGATCTGATGAATAATATTTTCACGAAATATGATTTATAATGTGCATGATAAGATATATATATATATATATATATATATATATAAGCAAGTTAATTTTTGCAGGATACACAGAACGGTGAACATGAACATGATGCAGAATTGGTATCTAACTCTATGGATGATTCTTTAAGCCAAAAAGAAAAGGTATGTTTGTTTGCTATGTTTTTACAATGCATTAGAATTACATCTTAAGAAAATGTGTATTAATTTATGTCATTCACAGAAAAATAAAAGGAAACCTAATGGTAATGTTAGCACAAGCAAGCAAAAGAAATATAAAGAGGCAGCACAATTTACAGAGATTTCGGAGACAGCTGATTTGCCGGTAACAACTGCAGTTCAACCTACTGTTCATGTGTTCCAGCCTGCTATTAATCCAATGCAAATGCAGCCAATTTACCCCAATTATGGACTTCATGGCGGTGAATCATCAACTTCCTGTTCTGGGCTCTTGGCACAAGTCATGAATTTTGGTGGTCATGGATTACATTTGAATAGTAATTTAGATAAATAA
Protein sequence

>MS.gene98515.t1

MRPTPLPLLSLSCARPTCDPAAPSSLRPPPRSPSLRVVMEHHKDCLDADSSEVEYTDDLYDDEEHHSSSDAEDDVDGNAADDVHDESVQQEGSINNALVGERLVNVNSIASDEILKLEFGTVDEAYEFYYRYGRCKGFAIRKGDVRSNSSGIITMREFVCNKQGLRDKKHLSRNDRKRDHKRITRTNCEARLRVRYKAKKGRYVVSKFEEGHNHELTPPKFTHLHPLYRKISEADSAQLDALQSHGIRTCHIMGYMVAQKGGYADVGFTKKDLYNYFDKKMRDVIKDGDVAAALKHLNVKSSTDPMLYAEYDVLRDYRNSELAAEFKSKFTEPVLTTHLRSIESDAAKIYTAEIFKEVKDEIIEAGAVSLKSKECVGDTMVYTLRKYREKGIEREVVYDAASLEFQCSCRLFETRGIPCCHVFFVMKEEDIDHIPKCLVMTRWTKNAKDAFLNNDSNGEMDSDMIEVARFGAYCSAFTAFYDQVGDPIPVKSKGAPKKKKNATKSVRHCSKCRSTSHTARHCSDTQNGEHEHDAELVSNSMDDSLSQKEKKNKRKPNGNVSTSKQKKYKEAAQFTEISETADLPVTTAVQPTVHVFQPAINPMQMQPIYPNYGLHGGESSTSCSGLLAQVMNFGGHGLHLNSNLDK