Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98582.t1 | AET00075.1 | 44.4 | 367 | 79 | 8 | 25 | 286 | 13 | 359 | 5.00E-52 | 214.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98582.t1 | Q8S9H7 | 55.7 | 88 | 34 | 3 | 200 | 286 | 132 | 215 | 9.0e-18 | 92.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98582.t1 | G7K310 | 44.4 | 367 | 79 | 8 | 25 | 286 | 13 | 359 | 3.6e-52 | 214.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene98582.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98582.t1 | MTR_5g027570 | 78.613 | 173 | 37 | 0 | 119 | 291 | 11 | 183 | 2.76e-91 | 271 |
| MS.gene98582.t1 | MTR_5g088060 | 49.860 | 357 | 74 | 12 | 25 | 286 | 13 | 359 | 3.10e-82 | 255 |
| MS.gene98582.t1 | MTR_5g488160 | 49.860 | 357 | 74 | 12 | 25 | 286 | 13 | 359 | 3.10e-82 | 255 |
| MS.gene98582.t1 | MTR_5g088010 | 70.000 | 150 | 39 | 2 | 138 | 286 | 3 | 147 | 6.29e-66 | 207 |
| MS.gene98582.t1 | MTR_5g027550 | 59.459 | 185 | 49 | 3 | 119 | 292 | 11 | 180 | 3.53e-58 | 186 |
| MS.gene98582.t1 | MTR_5g027780 | 69.504 | 141 | 29 | 2 | 15 | 145 | 30 | 166 | 3.10e-56 | 180 |
| MS.gene98582.t1 | MTR_5g027770 | 50.521 | 192 | 38 | 5 | 15 | 204 | 34 | 170 | 2.08e-42 | 148 |
| MS.gene98582.t1 | MTR_5g027770 | 56.429 | 140 | 22 | 2 | 15 | 118 | 163 | 299 | 6.34e-39 | 139 |
| MS.gene98582.t1 | MTR_5g088200 | 47.340 | 188 | 24 | 5 | 1 | 118 | 1 | 183 | 8.07e-37 | 139 |
| MS.gene98582.t1 | MTR_5g088005 | 53.788 | 132 | 34 | 3 | 1 | 118 | 1 | 119 | 2.08e-28 | 107 |
| MS.gene98582.t1 | MTR_3g462790 | 42.647 | 136 | 62 | 3 | 144 | 278 | 104 | 224 | 2.41e-24 | 100 |
| MS.gene98582.t1 | MTR_8g063600 | 56.471 | 85 | 36 | 1 | 194 | 278 | 100 | 183 | 7.86e-24 | 98.6 |
| MS.gene98582.t1 | MTR_5g081860 | 49.541 | 109 | 47 | 3 | 190 | 292 | 115 | 221 | 3.29e-23 | 96.7 |
| MS.gene98582.t1 | MTR_1g111830 | 43.443 | 122 | 63 | 3 | 168 | 286 | 89 | 207 | 5.72e-23 | 95.5 |
| MS.gene98582.t1 | MTR_5g069710 | 53.125 | 96 | 42 | 2 | 190 | 284 | 122 | 215 | 1.90e-22 | 95.1 |
| MS.gene98582.t1 | MTR_4g111975 | 51.807 | 83 | 37 | 2 | 193 | 274 | 131 | 211 | 2.19e-22 | 95.1 |
| MS.gene98582.t1 | MTR_2g100930 | 48.485 | 99 | 47 | 2 | 192 | 288 | 99 | 195 | 6.96e-22 | 94.4 |
| MS.gene98582.t1 | MTR_8g063870 | 38.095 | 168 | 85 | 6 | 120 | 278 | 12 | 169 | 7.93e-22 | 92.8 |
| MS.gene98582.t1 | MTR_4g100630 | 39.231 | 130 | 68 | 4 | 150 | 275 | 47 | 169 | 8.47e-22 | 93.6 |
| MS.gene98582.t1 | MTR_7g067080 | 55.000 | 80 | 34 | 1 | 189 | 268 | 129 | 206 | 3.00e-21 | 92.0 |
| MS.gene98582.t1 | MTR_1g048660 | 53.425 | 73 | 32 | 1 | 202 | 274 | 14 | 84 | 5.22e-19 | 80.5 |
| MS.gene98582.t1 | MTR_3g104370 | 50.000 | 76 | 37 | 1 | 202 | 276 | 93 | 168 | 7.93e-19 | 84.0 |
| MS.gene98582.t1 | MTR_4g107230 | 45.455 | 110 | 54 | 3 | 183 | 291 | 66 | 170 | 1.72e-18 | 84.0 |
| MS.gene98582.t1 | MTR_6g092540 | 54.286 | 70 | 30 | 1 | 196 | 265 | 93 | 160 | 1.97e-18 | 84.0 |
| MS.gene98582.t1 | MTR_8g101650 | 44.444 | 99 | 48 | 3 | 196 | 290 | 101 | 196 | 5.31e-18 | 82.4 |
| MS.gene98582.t1 | MTR_5g075760 | 47.312 | 93 | 43 | 3 | 201 | 292 | 106 | 193 | 1.69e-17 | 79.7 |
| MS.gene98582.t1 | MTR_5g037080 | 54.167 | 72 | 31 | 1 | 176 | 247 | 80 | 149 | 2.65e-17 | 80.9 |
| MS.gene98582.t1 | MTR_4g015130 | 55.932 | 59 | 24 | 1 | 210 | 268 | 3 | 59 | 3.20e-16 | 72.8 |
| MS.gene98582.t1 | MTR_5g075790 | 37.903 | 124 | 67 | 4 | 174 | 292 | 83 | 201 | 3.44e-16 | 76.3 |
| MS.gene98582.t1 | MTR_1g083180 | 50.000 | 76 | 36 | 2 | 199 | 273 | 60 | 134 | 1.30e-15 | 73.9 |
| MS.gene98582.t1 | MTR_1g033620 | 55.738 | 61 | 24 | 2 | 215 | 274 | 20 | 78 | 9.84e-15 | 72.8 |
| MS.gene98582.t1 | MTR_0036s0260 | 44.928 | 69 | 36 | 1 | 202 | 270 | 30 | 96 | 1.08e-14 | 72.0 |
| MS.gene98582.t1 | MTR_2g090305 | 46.377 | 69 | 35 | 1 | 202 | 270 | 30 | 96 | 6.82e-14 | 69.3 |
| MS.gene98582.t1 | MTR_3g070110 | 50.685 | 73 | 29 | 2 | 201 | 267 | 96 | 167 | 3.13e-13 | 67.8 |
| MS.gene98582.t1 | MTR_8g072990 | 43.077 | 65 | 37 | 0 | 197 | 261 | 97 | 161 | 6.22e-12 | 64.7 |
| MS.gene98582.t1 | MTR_6g043490 | 37.805 | 82 | 48 | 1 | 197 | 275 | 104 | 185 | 7.10e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98582.t1 | AT5G08520 | 48.515 | 101 | 50 | 1 | 167 | 267 | 85 | 183 | 1.87e-25 | 103 |
| MS.gene98582.t1 | AT5G04760 | 50.000 | 94 | 43 | 2 | 185 | 278 | 84 | 173 | 1.35e-23 | 96.3 |
| MS.gene98582.t1 | AT1G49010 | 50.549 | 91 | 42 | 2 | 192 | 281 | 126 | 214 | 2.32e-23 | 97.8 |
| MS.gene98582.t1 | AT5G58900 | 56.790 | 81 | 33 | 1 | 187 | 267 | 128 | 206 | 3.21e-23 | 97.1 |
| MS.gene98582.t1 | AT2G38090 | 49.550 | 111 | 47 | 4 | 170 | 273 | 105 | 213 | 1.18e-22 | 95.5 |
| MS.gene98582.t1 | AT5G23650 | 45.536 | 112 | 56 | 2 | 160 | 271 | 83 | 189 | 7.88e-22 | 94.0 |
| MS.gene98582.t1 | AT5G05790 | 48.485 | 99 | 48 | 2 | 185 | 282 | 116 | 212 | 3.38e-21 | 91.3 |
| MS.gene98582.t1 | AT5G05790 | 48.485 | 99 | 48 | 2 | 185 | 282 | 116 | 212 | 3.38e-21 | 91.3 |
| MS.gene98582.t1 | AT5G01200 | 56.000 | 75 | 31 | 1 | 193 | 267 | 139 | 211 | 6.77e-21 | 90.1 |
| MS.gene98582.t1 | AT3G11280 | 52.222 | 90 | 37 | 2 | 186 | 271 | 113 | 200 | 1.30e-20 | 89.4 |
| MS.gene98582.t1 | AT3G11280 | 52.222 | 90 | 37 | 2 | 186 | 271 | 113 | 200 | 1.30e-20 | 89.4 |
| MS.gene98582.t1 | AT5G47390 | 51.351 | 74 | 34 | 1 | 192 | 265 | 88 | 159 | 8.58e-20 | 88.6 |
| MS.gene98582.t1 | AT5G61620 | 52.273 | 88 | 32 | 2 | 202 | 281 | 110 | 195 | 1.21e-19 | 87.8 |
| MS.gene98582.t1 | AT3G10580 | 42.857 | 98 | 49 | 3 | 184 | 279 | 77 | 169 | 3.99e-19 | 85.1 |
| MS.gene98582.t1 | AT3G10580 | 42.857 | 98 | 49 | 3 | 184 | 279 | 77 | 169 | 5.57e-19 | 85.5 |
| MS.gene98582.t1 | AT5G56840 | 52.857 | 70 | 32 | 1 | 196 | 265 | 87 | 155 | 5.58e-18 | 81.6 |
| MS.gene98582.t1 | AT1G74840 | 56.250 | 64 | 28 | 0 | 183 | 246 | 79 | 142 | 3.14e-17 | 79.7 |
| MS.gene98582.t1 | AT1G74840 | 56.250 | 64 | 28 | 0 | 183 | 246 | 79 | 142 | 3.45e-17 | 80.1 |
| MS.gene98582.t1 | AT1G70000 | 61.017 | 59 | 20 | 1 | 192 | 247 | 87 | 145 | 1.22e-16 | 78.6 |
| MS.gene98582.t1 | AT1G70000 | 61.017 | 59 | 20 | 1 | 192 | 247 | 87 | 145 | 1.22e-16 | 78.6 |
| MS.gene98582.t1 | AT3G16350 | 58.065 | 62 | 24 | 1 | 188 | 247 | 123 | 184 | 1.31e-16 | 79.7 |
| MS.gene98582.t1 | AT1G19000 | 48.315 | 89 | 36 | 3 | 158 | 246 | 70 | 148 | 5.17e-16 | 77.0 |
| MS.gene98582.t1 | AT1G19000 | 48.315 | 89 | 36 | 3 | 158 | 246 | 70 | 148 | 5.17e-16 | 77.0 |
| MS.gene98582.t1 | AT4G09450 | 56.716 | 67 | 27 | 1 | 202 | 268 | 93 | 157 | 6.12e-16 | 75.1 |
| MS.gene98582.t1 | AT3G10590 | 31.522 | 184 | 98 | 5 | 106 | 288 | 37 | 193 | 7.41e-16 | 75.1 |
Find 76 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTATATCTTTCACATTT+TGG | 0.106789 | 5.4:+18361749 | None:intergenic |
| CGATGTGTCATTCTTGTTTA+AGG | 0.196236 | 5.4:+18361693 | None:intergenic |
| TGTGATGTATAGGTTGTTTC+TGG | 0.210646 | 5.4:-18361881 | MS.gene98582:intron |
| CTCCTAAGAAAAGCAATTAT+TGG | 0.235641 | 5.4:-18363429 | MS.gene98582:CDS |
| TCAACACGATTCTTAGGTTT+TGG | 0.247019 | 5.4:+18363316 | None:intergenic |
| ACATTCTCAACACGATTCTT+AGG | 0.253884 | 5.4:+18363310 | None:intergenic |
| CCTGCTGCCACTGGGGATAC+AGG | 0.325036 | 5.4:+18363145 | None:intergenic |
| TATGCTTTCCCACCTGGTTC+AGG | 0.329227 | 5.4:-18363196 | MS.gene98582:CDS |
| TCACCTTGTCCTGCTGCCAC+TGG | 0.332187 | 5.4:+18363136 | None:intergenic |
| CACCTTGTCCTGCTGCCACT+GGG | 0.340792 | 5.4:+18363137 | None:intergenic |
| GATGTTCCTGTGTTGGTTGT+TGG | 0.356491 | 5.4:-18363376 | MS.gene98582:CDS |
| CCTGCATATGCTTTCCCACC+TGG | 0.358776 | 5.4:-18363202 | MS.gene98582:CDS |
| TCTGCTTCACGACTTCCTTC+TGG | 0.363810 | 5.4:+18362476 | None:intergenic |
| TGAGCATAGCATGGAACAAC+AGG | 0.409179 | 5.4:-18362633 | MS.gene98582:CDS |
| TGCTATGCTCAGATGGATCT+TGG | 0.411752 | 5.4:+18362645 | None:intergenic |
| CGAACATTGTGCTTGGGGCC+TGG | 0.414345 | 5.4:+18363256 | None:intergenic |
| GGATTCTCACCATTCGGATA+AGG | 0.417277 | 5.4:+18363172 | None:intergenic |
| ACAGGACGAACATTGTGCTT+GGG | 0.429819 | 5.4:+18363250 | None:intergenic |
| AAAGCAATTATGGTGATTGC+TGG | 0.434875 | 5.4:-18363475 | None:intergenic |
| GGCTTAGGATTCTCACCATT+CGG | 0.437848 | 5.4:+18363166 | None:intergenic |
| AGATATTTCAAAAGAATTTG+TGG | 0.448838 | 5.4:-18361824 | MS.gene98582:CDS |
| CACATCGATCACTGCTCCTA+TGG | 0.451206 | 5.4:-18361677 | MS.gene98582:CDS |
| AACTTAGTTCAAGCTGAGTC+AGG | 0.458703 | 5.4:-18362545 | MS.gene98582:CDS |
| ATGGAACAACAGGAGAAAAC+TGG | 0.458792 | 5.4:-18362623 | MS.gene98582:CDS |
| CACAGGACGAACATTGTGCT+TGG | 0.472312 | 5.4:+18363249 | None:intergenic |
| ATGACCCGACTCACTGATAT+CGG | 0.474612 | 5.4:+18362598 | None:intergenic |
| TGGAAGAAACCTGATGTTGA+TGG | 0.476300 | 5.4:-18363409 | MS.gene98582:CDS |
| AGAGAGAAGGCGTAGGGAAA+GGG | 0.483144 | 5.4:-18362456 | MS.gene98582:CDS |
| GATGGATCTTGGACTGAAGC+TGG | 0.485915 | 5.4:+18362656 | None:intergenic |
| CAGAGAGAAGGCGTAGGGAA+AGG | 0.500095 | 5.4:-18362457 | MS.gene98582:CDS |
| CCTGTATCCCCAGTGGCAGC+AGG | 0.501497 | 5.4:-18363145 | MS.gene98582:CDS |
| TTGGTTCTACTCTGTCCAAT+CGG | 0.503755 | 5.4:-18361620 | None:intergenic |
| GGATTCTCATGTTGTTCCAT+AGG | 0.504821 | 5.4:+18361661 | None:intergenic |
| GGCACCGATATCAGTGAGTC+GGG | 0.505895 | 5.4:-18362602 | MS.gene98582:CDS |
| GCCACTGGGGATACAGGCTT+AGG | 0.516695 | 5.4:+18363151 | None:intergenic |
| GCATGGCTAGCAATTTGAGT+TGG | 0.525594 | 5.4:+18361790 | None:intergenic |
| TGTTCCATGCTATGCTCAGA+TGG | 0.527301 | 5.4:+18362638 | None:intergenic |
| TGTATAGGTTGTTTCTGGAG+GGG | 0.528745 | 5.4:-18361876 | MS.gene98582:intron |
| AGAAAGAGCTGGCCACGACT+TGG | 0.528799 | 5.4:+18363351 | None:intergenic |
| CAAGCTGAGTCAGGAGCAGA+AGG | 0.534197 | 5.4:-18362536 | MS.gene98582:CDS |
| AACCAACTGCATTTGTCTTG+AGG | 0.538543 | 5.4:+18361637 | None:intergenic |
| ATGTATAGGTTGTTTCTGGA+GGG | 0.542704 | 5.4:-18361877 | MS.gene98582:intron |
| TCCCCAGTGGCAGCAGGACA+AGG | 0.543373 | 5.4:-18363139 | MS.gene98582:intron |
| ATTAGAGTTTAGAATTTCGA+CGG | 0.548915 | 5.4:+18362574 | None:intergenic |
| ATGTGAAAGATATAGAAAAG+AGG | 0.554408 | 5.4:-18361744 | MS.gene98582:CDS |
| GCAGGAACAACAATGTGAGT+TGG | 0.556043 | 5.4:+18363220 | None:intergenic |
| ATGTGAGTTGGAGGTGCCAC+AGG | 0.556749 | 5.4:+18363232 | None:intergenic |
| CAACTGCATTTGTCTTGAGG+AGG | 0.556868 | 5.4:+18361640 | None:intergenic |
| TTCGGATAAGGTCCTGAACC+AGG | 0.561660 | 5.4:+18363184 | None:intergenic |
| TGATAGTGTGGTGATGCCAC+AGG | 0.562443 | 5.4:+18363283 | None:intergenic |
| GAAGTCGTGAAGCAGAGAGA+AGG | 0.582294 | 5.4:-18362469 | MS.gene98582:CDS |
| GGCGTAGGGAAAGGGTACAT+TGG | 0.585151 | 5.4:-18362448 | MS.gene98582:CDS |
| TGAAGCAGAGAGAAGGCGTA+GGG | 0.585499 | 5.4:-18362462 | MS.gene98582:CDS |
| GAAAGGGTACATTGGACAGA+AGG | 0.586417 | 5.4:-18362440 | MS.gene98582:CDS |
| CTCCTCAAGACAAATGCAGT+TGG | 0.587149 | 5.4:-18361639 | MS.gene98582:CDS |
| TCACCACACTATCAAAAGCC+AGG | 0.587566 | 5.4:-18363274 | MS.gene98582:CDS |
| CCAGGTGGGAAAGCATATGC+AGG | 0.588904 | 5.4:+18363202 | None:intergenic |
| GTTTGAGCATCAGAAAGAGC+TGG | 0.591524 | 5.4:+18363340 | None:intergenic |
| GTGAAGCAGAGAGAAGGCGT+AGG | 0.593591 | 5.4:-18362463 | MS.gene98582:CDS |
| TCTTGTTTAAGGTTGTGTCG+TGG | 0.595697 | 5.4:+18361704 | None:intergenic |
| CAAGCACAATGTTCGTCCTG+TGG | 0.597290 | 5.4:-18363248 | MS.gene98582:CDS |
| AGATCCATCTGAGCATAGCA+TGG | 0.598790 | 5.4:-18362642 | MS.gene98582:CDS |
| TGGCACCGATATCAGTGAGT+CGG | 0.599539 | 5.4:-18362603 | MS.gene98582:CDS |
| GGAAGAAACCTGATGTTGAT+GGG | 0.600653 | 5.4:-18363408 | MS.gene98582:CDS |
| CAGGACGAACATTGTGCTTG+GGG | 0.606274 | 5.4:+18363251 | None:intergenic |
| GATGTATAGGTTGTTTCTGG+AGG | 0.607647 | 5.4:-18361878 | MS.gene98582:intron |
| GGAACAACAATGTGAGTTGG+AGG | 0.627922 | 5.4:+18363223 | None:intergenic |
| CAAGCTGAGTCAGTACCAGA+AGG | 0.630435 | 5.4:-18362491 | MS.gene98582:CDS |
| GGTTCAGGACCTTATCCGAA+TGG | 0.640623 | 5.4:-18363181 | MS.gene98582:CDS |
| TGTTGAGAATGTTTGTCCTG+TGG | 0.653226 | 5.4:-18363299 | MS.gene98582:CDS |
| GATAAGGTCCTGAACCAGGT+GGG | 0.657071 | 5.4:+18363188 | None:intergenic |
| ACCTTGTCCTGCTGCCACTG+GGG | 0.659898 | 5.4:+18363138 | None:intergenic |
| TTGGTTCCAACAACCAACAC+AGG | 0.662334 | 5.4:+18363370 | None:intergenic |
| TGGTTGTTGGAACCAAGTCG+TGG | 0.665596 | 5.4:-18363363 | MS.gene98582:CDS |
| TCCTAAGCCTGTATCCCCAG+TGG | 0.691555 | 5.4:-18363152 | MS.gene98582:CDS |
| GGATAAGGTCCTGAACCAGG+TGG | 0.699303 | 5.4:+18363187 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACAAAATTAAGATTACT+TGG | + | chr5.4:18362171-18362190 | None:intergenic | 15.0% |
| !!! | AATTCTTATAGTTGTTTTTT+TGG | - | chr5.4:18362371-18362390 | MS.gene98582:intron | 15.0% |
| !!! | ATTTTGTTAACTTACATAAT+TGG | - | chr5.4:18362121-18362140 | MS.gene98582:intron | 15.0% |
| !!! | TTCTTTTTCAATTCTATTTT+AGG | - | chr5.4:18362717-18362736 | MS.gene98582:intron | 15.0% |
| !! | AAAAAAAGATATAACTTCCA+AGG | + | chr5.4:18362699-18362718 | None:intergenic | 20.0% |
| !! | AAGAATTAAGAAGATTTAAC+TGG | - | chr5.4:18362290-18362309 | MS.gene98582:intron | 20.0% |
| !! | AGATATTTCAAAAGAATTTG+TGG | - | chr5.4:18363263-18363282 | MS.gene98582:CDS | 20.0% |
| !! | ATTATGATATCTTCTCATTA+TGG | - | chr5.4:18362066-18362085 | MS.gene98582:intron | 20.0% |
| !! | TGTAAGTTAACAAAATTACT+TGG | + | chr5.4:18362117-18362136 | None:intergenic | 20.0% |
| !!! | ATTTTGTTAACTTGCATAAT+TGG | - | chr5.4:18362181-18362200 | MS.gene98582:intron | 20.0% |
| !!! | TTCTATAATTTGTGATGTAT+AGG | - | chr5.4:18363196-18363215 | MS.gene98582:CDS | 20.0% |
| !!! | TTTCTATATCTTTCACATTT+TGG | + | chr5.4:18363341-18363360 | None:intergenic | 20.0% |
| ! | AGATGCAAATTAATCTTTCT+AGG | - | chr5.4:18363036-18363055 | MS.gene98582:intron | 25.0% |
| ! | ATGTGAAAGATATAGAAAAG+AGG | - | chr5.4:18363343-18363362 | MS.gene98582:CDS | 25.0% |
| ! | GAAGAAATGAAACTATATCT+TGG | + | chr5.4:18363127-18363146 | None:intergenic | 25.0% |
| !! | ATTAGAGTTTAGAATTTCGA+CGG | + | chr5.4:18362516-18362535 | None:intergenic | 25.0% |
| !! | GCTCATTTAAATCATTTTGA+TGG | + | chr5.4:18362412-18362431 | None:intergenic | 25.0% |
| !! | TATTGTAAATACGTATCGAT+TGG | + | chr5.4:18362920-18362939 | None:intergenic | 25.0% |
| !!! | CATTTAAATCATTTTGATGG+AGG | + | chr5.4:18362409-18362428 | None:intergenic | 25.0% |
| !!! | TTCCAATAATTGCTTTTCTT+AGG | + | chr5.4:18361663-18361682 | None:intergenic | 25.0% |
| !!! | TTGGTGGATAAAGTATTTTT+GGG | + | chr5.4:18363322-18363341 | None:intergenic | 25.0% |
| !!! | TTTGGTGGATAAAGTATTTT+TGG | + | chr5.4:18363323-18363342 | None:intergenic | 25.0% |
| CTCCTAAGAAAAGCAATTAT+TGG | - | chr5.4:18361658-18361677 | MS.gene98582:CDS | 30.0% | |
| GTAAGTATTCAATCTATCCT+TGG | - | chr5.4:18362679-18362698 | MS.gene98582:CDS | 30.0% | |
| ! | CTATATCTTTCACATTTTGG+TGG | + | chr5.4:18363338-18363357 | None:intergenic | 30.0% |
| ! | TCTCATTATGGTTCTGTAAT+TGG | - | chr5.4:18362078-18362097 | MS.gene98582:intron | 30.0% |
| !! | CTGTAATTGGTTTGAGTAAT+TGG | - | chr5.4:18362091-18362110 | MS.gene98582:intron | 30.0% |
| ACAACTAAAAGCCACTTCAA+TGG | + | chr5.4:18362010-18362029 | None:intergenic | 35.0% | |
| ACATTCTCAACACGATTCTT+AGG | + | chr5.4:18361780-18361799 | None:intergenic | 35.0% | |
| TGCATATCAACAAAGAGAAG+AGG | - | chr5.4:18363060-18363079 | MS.gene98582:intron | 35.0% | |
| TTGCTTTGATACCATTGAAG+TGG | - | chr5.4:18361996-18362015 | MS.gene98582:intron | 35.0% | |
| TTGGCATGTATCCAAAACAA+TGG | + | chr5.4:18363108-18363127 | None:intergenic | 35.0% | |
| ! | AAACTTTTCCCATCAACATC+AGG | + | chr5.4:18361690-18361709 | None:intergenic | 35.0% |
| ! | CGATGTGTCATTCTTGTTTA+AGG | + | chr5.4:18363397-18363416 | None:intergenic | 35.0% |
| ! | GATACTCAACTTTGAAGAAG+TGG | - | chr5.4:18362848-18362867 | MS.gene98582:intron | 35.0% |
| ! | TCAACACGATTCTTAGGTTT+TGG | + | chr5.4:18361774-18361793 | None:intergenic | 35.0% |
| ! | TGCAAGTGTTTCCATTGTTT+TGG | - | chr5.4:18363094-18363113 | MS.gene98582:intron | 35.0% |
| ! | TGTGATGTATAGGTTGTTTC+TGG | - | chr5.4:18363206-18363225 | MS.gene98582:CDS | 35.0% |
| !! | AAGTTTTGATGTTCCTGTGT+TGG | - | chr5.4:18361704-18361723 | MS.gene98582:CDS | 35.0% |
| !! | ATGTATAGGTTGTTTCTGGA+GGG | - | chr5.4:18363210-18363229 | MS.gene98582:CDS | 35.0% |
| !! | TTGGCTTGTTGATCTGATTA+AGG | - | chr5.4:18362200-18362219 | MS.gene98582:intron | 35.0% |
| !!! | CATCGTTTTTTGAGTAAACC+AGG | - | chr5.4:18362253-18362272 | MS.gene98582:intron | 35.0% |
| !!! | GGATAAAGTATTTTTGGGCA+TGG | + | chr5.4:18363317-18363336 | None:intergenic | 35.0% |
| !!! | TTTTTTGAGTAAACCAGGTG+AGG | - | chr5.4:18362258-18362277 | MS.gene98582:intron | 35.0% |
| AACCAACTGCATTTGTCTTG+AGG | + | chr5.4:18363453-18363472 | None:intergenic | 40.0% | |
| AACTTAGTTCAAGCTGAGTC+AGG | - | chr5.4:18362542-18362561 | MS.gene98582:CDS | 40.0% | |
| ATGGAACAACAGGAGAAAAC+TGG | - | chr5.4:18362464-18362483 | MS.gene98582:CDS | 40.0% | |
| GATTTGATTAAACCAGCCTG+TGG | - | chr5.4:18362230-18362249 | MS.gene98582:intron | 40.0% | |
| GGAAGAAACCTGATGTTGAT+GGG | - | chr5.4:18361679-18361698 | MS.gene98582:CDS | 40.0% | |
| GGATTCTCATGTTGTTCCAT+AGG | + | chr5.4:18363429-18363448 | None:intergenic | 40.0% | |
| TACTCAAAAAACGATGCCAC+AGG | + | chr5.4:18362249-18362268 | None:intergenic | 40.0% | |
| TAGCTCATCTGATTAAGGCT+TGG | - | chr5.4:18362145-18362164 | MS.gene98582:intron | 40.0% | |
| TGGAAGAAACCTGATGTTGA+TGG | - | chr5.4:18361678-18361697 | MS.gene98582:CDS | 40.0% | |
| TGTTGAGAATGTTTGTCCTG+TGG | - | chr5.4:18361788-18361807 | MS.gene98582:CDS | 40.0% | |
| ! | TCTTGTTTAAGGTTGTGTCG+TGG | + | chr5.4:18363386-18363405 | None:intergenic | 40.0% |
| ! | TTGGCTAGCTCATCTGATTA+AGG | - | chr5.4:18362140-18362159 | MS.gene98582:intron | 40.0% |
| !! | GATGTATAGGTTGTTTCTGG+AGG | - | chr5.4:18363209-18363228 | MS.gene98582:CDS | 40.0% |
| !! | TGTATAGGTTGTTTCTGGAG+GGG | - | chr5.4:18363211-18363230 | MS.gene98582:CDS | 40.0% |
| AAAAACATGGTAGGGGACGT+TGG | - | chr5.4:18363238-18363257 | MS.gene98582:CDS | 45.0% | |
| ACAGGACGAACATTGTGCTT+GGG | + | chr5.4:18361840-18361859 | None:intergenic | 45.0% | |
| AGATCCATCTGAGCATAGCA+TGG | - | chr5.4:18362445-18362464 | MS.gene98582:CDS | 45.0% | |
| AGGGGCTTGAAAAACATGGT+AGG | - | chr5.4:18363229-18363248 | MS.gene98582:CDS | 45.0% | |
| ATGACCCGACTCACTGATAT+CGG | + | chr5.4:18362492-18362511 | None:intergenic | 45.0% | |
| CAACTGCATTTGTCTTGAGG+AGG | + | chr5.4:18363450-18363469 | None:intergenic | 45.0% | |
| CAAGGACGTTGATCTACATG+CGG | + | chr5.4:18362891-18362910 | None:intergenic | 45.0% | |
| CTCCTCAAGACAAATGCAGT+TGG | - | chr5.4:18363448-18363467 | MS.gene98582:CDS | 45.0% | |
| GCAGGAACAACAATGTGAGT+TGG | + | chr5.4:18361870-18361889 | None:intergenic | 45.0% | |
| GCATGGCTAGCAATTTGAGT+TGG | + | chr5.4:18363300-18363319 | None:intergenic | 45.0% | |
| GGATTCTCACCATTCGGATA+AGG | + | chr5.4:18361918-18361937 | None:intergenic | 45.0% | |
| GGCTTAGGATTCTCACCATT+CGG | + | chr5.4:18361924-18361943 | None:intergenic | 45.0% | |
| GGGCTTGAAAAACATGGTAG+GGG | - | chr5.4:18363231-18363250 | MS.gene98582:CDS | 45.0% | |
| GGGGCTTGAAAAACATGGTA+GGG | - | chr5.4:18363230-18363249 | MS.gene98582:CDS | 45.0% | |
| GTTTGAGCATCAGAAAGAGC+TGG | + | chr5.4:18361750-18361769 | None:intergenic | 45.0% | |
| TCACCACACTATCAAAAGCC+AGG | - | chr5.4:18361813-18361832 | MS.gene98582:CDS | 45.0% | |
| TGAGCATAGCATGGAACAAC+AGG | - | chr5.4:18362454-18362473 | MS.gene98582:CDS | 45.0% | |
| TGCTATGCTCAGATGGATCT+TGG | + | chr5.4:18362445-18362464 | None:intergenic | 45.0% | |
| TGTTCCATGCTATGCTCAGA+TGG | + | chr5.4:18362452-18362471 | None:intergenic | 45.0% | |
| TTGGTTCCAACAACCAACAC+AGG | + | chr5.4:18361720-18361739 | None:intergenic | 45.0% | |
| ! | GAAAGGGTACATTGGACAGA+AGG | - | chr5.4:18362647-18362666 | MS.gene98582:CDS | 45.0% |
| ! | GGAACAACAATGTGAGTTGG+AGG | + | chr5.4:18361867-18361886 | None:intergenic | 45.0% |
| !! | CGTATCGATTGGTAGCTACA+AGG | + | chr5.4:18362909-18362928 | None:intergenic | 45.0% |
| !! | GATGTTCCTGTGTTGGTTGT+TGG | - | chr5.4:18361711-18361730 | MS.gene98582:CDS | 45.0% |
| CAAAAAACGATGCCACAGGC+TGG | + | chr5.4:18362245-18362264 | None:intergenic | 50.0% | |
| CAAGCACAATGTTCGTCCTG+TGG | - | chr5.4:18361839-18361858 | MS.gene98582:CDS | 50.0% | |
| CAAGCTGAGTCAGTACCAGA+AGG | - | chr5.4:18362596-18362615 | MS.gene98582:CDS | 50.0% | |
| CACAGGACGAACATTGTGCT+TGG | + | chr5.4:18361841-18361860 | None:intergenic | 50.0% | |
| CACATCGATCACTGCTCCTA+TGG | - | chr5.4:18363410-18363429 | MS.gene98582:CDS | 50.0% | |
| CAGGACGAACATTGTGCTTG+GGG | + | chr5.4:18361839-18361858 | None:intergenic | 50.0% | |
| CTGGAGGGGCTTGAAAAACA+TGG | - | chr5.4:18363225-18363244 | MS.gene98582:CDS | 50.0% | |
| GAAGTCGTGAAGCAGAGAGA+AGG | - | chr5.4:18362618-18362637 | MS.gene98582:CDS | 50.0% | |
| GATAAGGTCCTGAACCAGGT+GGG | + | chr5.4:18361902-18361921 | None:intergenic | 50.0% | |
| GATGGATCTTGGACTGAAGC+TGG | + | chr5.4:18362434-18362453 | None:intergenic | 50.0% | |
| GGTTCAGGACCTTATCCGAA+TGG | - | chr5.4:18361906-18361925 | MS.gene98582:intron | 50.0% | |
| TATGCTTTCCCACCTGGTTC+AGG | - | chr5.4:18361891-18361910 | MS.gene98582:intron | 50.0% | |
| TCTGCTTCACGACTTCCTTC+TGG | + | chr5.4:18362614-18362633 | None:intergenic | 50.0% | |
| TGAGTAAACCAGGTGAGGCT+GGG | - | chr5.4:18362263-18362282 | MS.gene98582:intron | 50.0% | |
| TGGTTGTTGGAACCAAGTCG+TGG | - | chr5.4:18361724-18361743 | MS.gene98582:CDS | 50.0% | |
| TTCGGATAAGGTCCTGAACC+AGG | + | chr5.4:18361906-18361925 | None:intergenic | 50.0% | |
| TTGAGTAAACCAGGTGAGGC+TGG | - | chr5.4:18362262-18362281 | MS.gene98582:intron | 50.0% | |
| ! | AGAGAGAAGGCGTAGGGAAA+GGG | - | chr5.4:18362631-18362650 | MS.gene98582:CDS | 50.0% |
| ! | TGAAGCAGAGAGAAGGCGTA+GGG | - | chr5.4:18362625-18362644 | MS.gene98582:CDS | 50.0% |
| ! | TGATAGTGTGGTGATGCCAC+AGG | + | chr5.4:18361807-18361826 | None:intergenic | 50.0% |
| !! | TGGCACCGATATCAGTGAGT+CGG | - | chr5.4:18362484-18362503 | MS.gene98582:CDS | 50.0% |
| AGAAAGAGCTGGCCACGACT+TGG | + | chr5.4:18361739-18361758 | None:intergenic | 55.0% | |
| CAAGCTGAGTCAGGAGCAGA+AGG | - | chr5.4:18362551-18362570 | MS.gene98582:CDS | 55.0% | |
| CCTGCATATGCTTTCCCACC+TGG | - | chr5.4:18361885-18361904 | MS.gene98582:intron | 55.0% | |
| GAGTAAACCAGGTGAGGCTG+GGG | - | chr5.4:18362264-18362283 | MS.gene98582:intron | 55.0% | |
| GGATAAGGTCCTGAACCAGG+TGG | + | chr5.4:18361903-18361922 | None:intergenic | 55.0% | |
| TCCTAAGCCTGTATCCCCAG+TGG | - | chr5.4:18361935-18361954 | MS.gene98582:intron | 55.0% | |
| ! | CAGAGAGAAGGCGTAGGGAA+AGG | - | chr5.4:18362630-18362649 | MS.gene98582:CDS | 55.0% |
| ! | CCAGGTGGGAAAGCATATGC+AGG | + | chr5.4:18361888-18361907 | None:intergenic | 55.0% |
| ! | GGCGTAGGGAAAGGGTACAT+TGG | - | chr5.4:18362639-18362658 | MS.gene98582:CDS | 55.0% |
| ! | GTGAAGCAGAGAGAAGGCGT+AGG | - | chr5.4:18362624-18362643 | MS.gene98582:CDS | 55.0% |
| !! | ATGTGAGTTGGAGGTGCCAC+AGG | + | chr5.4:18361858-18361877 | None:intergenic | 55.0% |
| !! | GGCACCGATATCAGTGAGTC+GGG | - | chr5.4:18362485-18362504 | MS.gene98582:CDS | 55.0% |
| !!! | GGGCCTGGCTTTTGATAGTG+TGG | + | chr5.4:18361819-18361838 | None:intergenic | 55.0% |
| ACCTTGTCCTGCTGCCACTG+GGG | + | chr5.4:18361952-18361971 | None:intergenic | 60.0% | |
| CACCTTGTCCTGCTGCCACT+GGG | + | chr5.4:18361953-18361972 | None:intergenic | 60.0% | |
| CGAACATTGTGCTTGGGGCC+TGG | + | chr5.4:18361834-18361853 | None:intergenic | 60.0% | |
| GCCACTGGGGATACAGGCTT+AGG | + | chr5.4:18361939-18361958 | None:intergenic | 60.0% | |
| TCACCTTGTCCTGCTGCCAC+TGG | + | chr5.4:18361954-18361973 | None:intergenic | 60.0% | |
| TCTTAGTCCCCAGCCTCACC+TGG | + | chr5.4:18362274-18362293 | None:intergenic | 60.0% | |
| CCTGCTGCCACTGGGGATAC+AGG | + | chr5.4:18361945-18361964 | None:intergenic | 65.0% | |
| CCTGTATCCCCAGTGGCAGC+AGG | - | chr5.4:18361942-18361961 | MS.gene98582:intron | 65.0% | |
| TCCCCAGTGGCAGCAGGACA+AGG | - | chr5.4:18361948-18361967 | MS.gene98582:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 18361621 | 18363488 | 18361621 | ID=MS.gene98582 |
| chr5.4 | mRNA | 18361621 | 18363488 | 18361621 | ID=MS.gene98582.t1;Parent=MS.gene98582 |
| chr5.4 | exon | 18363140 | 18363488 | 18363140 | ID=MS.gene98582.t1.exon1;Parent=MS.gene98582.t1 |
| chr5.4 | CDS | 18363140 | 18363488 | 18363140 | ID=cds.MS.gene98582.t1;Parent=MS.gene98582.t1 |
| chr5.4 | exon | 18362431 | 18362704 | 18362431 | ID=MS.gene98582.t1.exon2;Parent=MS.gene98582.t1 |
| chr5.4 | CDS | 18362431 | 18362704 | 18362431 | ID=cds.MS.gene98582.t1;Parent=MS.gene98582.t1 |
| chr5.4 | exon | 18361621 | 18361891 | 18361621 | ID=MS.gene98582.t1.exon3;Parent=MS.gene98582.t1 |
| chr5.4 | CDS | 18361621 | 18361891 | 18361621 | ID=cds.MS.gene98582.t1;Parent=MS.gene98582.t1 |
| Gene Sequence |
| Protein sequence |
