Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98659.t1 | KEH20350.1 | 77.2 | 206 | 31 | 2 | 21 | 210 | 76 | 281 | 2.00E-79 | 305.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98659.t1 | A0A072U3H4 | 77.2 | 206 | 31 | 2 | 21 | 210 | 76 | 281 | 1.4e-79 | 305.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene98659.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98659.t1 | MTR_8g073315 | 73.786 | 206 | 38 | 2 | 21 | 210 | 71 | 276 | 6.32e-103 | 298 |
| MS.gene98659.t1 | MTR_8g073315 | 73.786 | 206 | 38 | 2 | 21 | 210 | 76 | 281 | 6.77e-103 | 298 |
| MS.gene98659.t1 | MTR_0040s0110 | 69.903 | 206 | 37 | 3 | 21 | 210 | 48 | 244 | 1.37e-95 | 278 |
| MS.gene98659.t1 | MTR_8g077640 | 73.913 | 46 | 11 | 1 | 1 | 45 | 181 | 226 | 2.63e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98659.t1 | AT2G25570 | 61.404 | 171 | 62 | 1 | 42 | 208 | 26 | 196 | 1.29e-71 | 216 |
| MS.gene98659.t1 | AT2G25570 | 53.431 | 204 | 79 | 2 | 21 | 208 | 77 | 280 | 1.48e-71 | 219 |
| MS.gene98659.t1 | AT2G25570 | 53.431 | 204 | 79 | 2 | 21 | 208 | 77 | 280 | 1.48e-71 | 219 |
Find 40 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAACTTTATTAATGATTC+TGG | 0.153422 | 4.4:+59272097 | None:intergenic |
| TTCTACATTCCTGATGTATT+TGG | 0.157633 | 4.4:-59275378 | None:intergenic |
| TCCAGATGCTCTTTACCTTT+TGG | 0.185776 | 4.4:-59273829 | MS.gene98659:CDS |
| TCATGTTCTGCATTCACTTT+AGG | 0.251117 | 4.4:-59273578 | MS.gene98659:CDS |
| TAAAGTAATCTTAATAATCT+TGG | 0.277419 | 4.4:+59271906 | None:intergenic |
| ATTAGTAGAAGCAGCAGATA+TGG | 0.364879 | 4.4:-59274518 | MS.gene98659:CDS |
| CAAATGGCTTGCAAGGTTAG+AGG | 0.378199 | 4.4:-59271951 | MS.gene98659:CDS |
| TAGCCGCGAAAATGATAAAA+AGG | 0.383747 | 4.4:-59275070 | MS.gene98659:CDS |
| CGGCATTGTGGTGTTTCCAT+AGG | 0.386883 | 4.4:-59273761 | MS.gene98659:CDS |
| CCCAAAAGGTAAAGAGCATC+TGG | 0.390457 | 4.4:+59273828 | None:intergenic |
| ATTGTATGGCAGTTAATAAT+AGG | 0.397969 | 4.4:-59275106 | MS.gene98659:intron |
| CCCAATGCATACTGTGCATC+AGG | 0.422036 | 4.4:+59274490 | None:intergenic |
| AAAGTAATCTTAATAATCTT+GGG | 0.424375 | 4.4:+59271907 | None:intergenic |
| TTGGGTGCTGTATATTTGAC+TGG | 0.433765 | 4.4:-59273810 | MS.gene98659:CDS |
| TTTGGAGAAAGCTGTGGATC+AGG | 0.435112 | 4.4:-59273939 | MS.gene98659:intron |
| GCAAAAGCAGGATGTGATCT+TGG | 0.448635 | 4.4:-59271977 | MS.gene98659:CDS |
| TCTGCATTCACTTTAGGACT+TGG | 0.451588 | 4.4:-59273572 | MS.gene98659:intron |
| GGCATTGTGGTGTTTCCATA+GGG | 0.475604 | 4.4:-59273760 | MS.gene98659:CDS |
| GTTCAGTTTGAAGAGAGGTT+CGG | 0.486612 | 4.4:-59272080 | MS.gene98659:CDS |
| TTAGTAGAAGCAGCAGATAT+GGG | 0.493936 | 4.4:-59274517 | MS.gene98659:CDS |
| TTACCTTCTCTGATGCCCTA+TGG | 0.498613 | 4.4:+59273745 | None:intergenic |
| TTGGATTCAAATGGCTTGCA+AGG | 0.500516 | 4.4:-59271958 | MS.gene98659:CDS |
| GGGTTGTCATTTAAGAGTTG+AGG | 0.524176 | 4.4:-59274470 | MS.gene98659:intron |
| GATGTGATCTTGGATTCAAA+TGG | 0.524435 | 4.4:-59271967 | MS.gene98659:CDS |
| AGTCAAGGATATGACGAAGT+TGG | 0.525647 | 4.4:+59275046 | None:intergenic |
| TTTCAGATAGCTGCAAAAGC+AGG | 0.531730 | 4.4:-59271989 | MS.gene98659:CDS |
| TGTTAAGAAAGATATTGCTT+CGG | 0.532157 | 4.4:-59273781 | MS.gene98659:CDS |
| TCAAATATACAGCACCCAAA+AGG | 0.537596 | 4.4:+59273814 | None:intergenic |
| CCTGATGCACAGTATGCATT+GGG | 0.538507 | 4.4:-59274490 | MS.gene98659:CDS |
| TGCAATTGATCCAGTAGAGA+TGG | 0.542124 | 4.4:-59272023 | MS.gene98659:CDS |
| AACTTCGTCATATCCTTGAC+TGG | 0.547745 | 4.4:-59275044 | MS.gene98659:CDS |
| TCCTGATGCACAGTATGCAT+TGG | 0.573129 | 4.4:-59274491 | MS.gene98659:CDS |
| AAGATATTGCTTCGGCATTG+TGG | 0.577625 | 4.4:-59273773 | MS.gene98659:CDS |
| TTATTATTTGGAGAAAGCTG+TGG | 0.578319 | 4.4:-59273945 | MS.gene98659:CDS |
| ATAAAGTTCAGTTTGAAGAG+AGG | 0.579265 | 4.4:-59272085 | MS.gene98659:CDS |
| TTTCCATAGGGCATCAGAGA+AGG | 0.588045 | 4.4:-59273748 | MS.gene98659:intron |
| ACAAATATGTTTGTAAACTG+AGG | 0.610066 | 4.4:-59274998 | MS.gene98659:intron |
| ATGGCTTGCAAGGTTAGAGG+AGG | 0.666157 | 4.4:-59271948 | MS.gene98659:CDS |
| GGTTCGGCTGCTCAAATGCG+AGG | 0.672687 | 4.4:-59272064 | MS.gene98659:CDS |
| GGTTAGAGGAGGAAGAGAAG+CGG | 0.689049 | 4.4:-59271937 | MS.gene98659:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTGCAAAAATATAAT+CGG | + | chr4.4:59273113-59273132 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTCTTAGTATTTA+TGG | - | chr4.4:59273622-59273641 | MS.gene98659:intron | 10.0% |
| !! | AATAATAAAATTAATCCCAA+GGG | + | chr4.4:59274661-59274680 | None:intergenic | 15.0% |
| !! | ACATGAAAAAAATTGAAAAA+AGG | + | chr4.4:59273191-59273210 | None:intergenic | 15.0% |
| !! | ATAATTGCAAAAATATAATC+GGG | + | chr4.4:59273112-59273131 | None:intergenic | 15.0% |
| !! | CATGAAAAAAATTGAAAAAA+GGG | + | chr4.4:59273190-59273209 | None:intergenic | 15.0% |
| !! | TAATAATAAAATTAATCCCA+AGG | + | chr4.4:59274662-59274681 | None:intergenic | 15.0% |
| !! | TTAGAATCAATTTATAATCT+TGG | - | chr4.4:59274620-59274639 | MS.gene98659:intron | 15.0% |
| !!! | CAATTTGATTTATATACATA+CGG | - | chr4.4:59272378-59272397 | MS.gene98659:intron | 15.0% |
| !!! | TCAACAAGTTTTTTATTATT+TGG | - | chr4.4:59273324-59273343 | MS.gene98659:intron | 15.0% |
| !!! | TTAGCATTTTTTTTTCTTAA+AGG | - | chr4.4:59273675-59273694 | MS.gene98659:intron | 15.0% |
| !! | AAAAAAACTAACAAAAACTG+AGG | + | chr4.4:59273247-59273266 | None:intergenic | 20.0% |
| !! | AACGAATTTCTAACAATATA+AGG | + | chr4.4:59272852-59272871 | None:intergenic | 20.0% |
| !! | ACATATAACATACATCAATA+AGG | + | chr4.4:59273422-59273441 | None:intergenic | 20.0% |
| !! | ATATCTTTGATACTATATGT+AGG | - | chr4.4:59274593-59274612 | MS.gene98659:intron | 20.0% |
| !! | ATCAAATTGTGAGTATTATA+AGG | + | chr4.4:59272367-59272386 | None:intergenic | 20.0% |
| !! | TCAAATTGTGAGTATTATAA+GGG | + | chr4.4:59272366-59272385 | None:intergenic | 20.0% |
| !! | TTAAAACAAACAATCTTTGT+TGG | - | chr4.4:59275030-59275049 | MS.gene98659:CDS | 20.0% |
| !!! | AACAAAGATTGTTTGTTTTA+AGG | + | chr4.4:59275031-59275050 | None:intergenic | 20.0% |
| !!! | ATGTACTTGTTATGAAAATA+TGG | + | chr4.4:59273835-59273854 | None:intergenic | 20.0% |
| !!! | GCAATTATATTTGATTTCTA+TGG | - | chr4.4:59273124-59273143 | MS.gene98659:intron | 20.0% |
| !!! | GTAGAAAACTACTTTTTAAT+TGG | + | chr4.4:59273905-59273924 | None:intergenic | 20.0% |
| !!! | GTGAATATATTTTTTCTAAC+CGG | + | chr4.4:59272690-59272709 | None:intergenic | 20.0% |
| !!! | TATTAGCAAACACATTTTTA+GGG | - | chr4.4:59274090-59274109 | MS.gene98659:intron | 20.0% |
| !!! | TGTGTTTGCTAATAAAAATA+AGG | + | chr4.4:59274084-59274103 | None:intergenic | 20.0% |
| !!! | TTATTAGCAAACACATTTTT+AGG | - | chr4.4:59274089-59274108 | MS.gene98659:intron | 20.0% |
| ! | AAAGTTTCATCAAATACAGA+AGG | + | chr4.4:59272450-59272469 | None:intergenic | 25.0% |
| ! | AAATTGTGAGTATTATAAGG+GGG | + | chr4.4:59272364-59272383 | None:intergenic | 25.0% |
| ! | ACAAATATGTTTGTAAACTG+AGG | - | chr4.4:59272283-59272302 | MS.gene98659:intron | 25.0% |
| ! | ACTAAACACTAATTCTTAGT+GGG | + | chr4.4:59274819-59274838 | None:intergenic | 25.0% |
| ! | AGAGCAAAGTAATTTCAAAT+AGG | - | chr4.4:59274373-59274392 | MS.gene98659:intron | 25.0% |
| ! | ATATTCACTGTGTTTGAAAA+AGG | + | chr4.4:59271965-59271984 | None:intergenic | 25.0% |
| ! | ATTGTATGGCAGTTAATAAT+AGG | - | chr4.4:59272175-59272194 | MS.gene98659:intron | 25.0% |
| ! | CAAATTGTGAGTATTATAAG+GGG | + | chr4.4:59272365-59272384 | None:intergenic | 25.0% |
| ! | CAGAATTTACATATTTGACA+TGG | - | chr4.4:59274477-59274496 | MS.gene98659:CDS | 25.0% |
| ! | CTGAACTTTATTAATGATTC+TGG | + | chr4.4:59275187-59275206 | None:intergenic | 25.0% |
| ! | TATTCACTGTGTTTGAAAAA+GGG | + | chr4.4:59271964-59271983 | None:intergenic | 25.0% |
| ! | TGTTAAGAAAGATATTGCTT+CGG | - | chr4.4:59273500-59273519 | MS.gene98659:intron | 25.0% |
| ! | TTCTAACTAAAACCATGTTT+GGG | - | chr4.4:59274966-59274985 | MS.gene98659:intron | 25.0% |
| ! | TTTCAAATCAAGTTCTTATG+AGG | - | chr4.4:59274840-59274859 | MS.gene98659:intron | 25.0% |
| !! | GAAGTTTACACGTTTTTAAT+AGG | - | chr4.4:59274033-59274052 | MS.gene98659:intron | 25.0% |
| !! | TTCTAACTTGTGAAATTAGT+AGG | + | chr4.4:59274016-59274035 | None:intergenic | 25.0% |
| !!! | AAAAAACTTGTTGATCTGAA+TGG | + | chr4.4:59273318-59273337 | None:intergenic | 25.0% |
| !!! | AGTATTTTAGATTATCCCTT+GGG | - | chr4.4:59274643-59274662 | MS.gene98659:intron | 25.0% |
| !!! | AGTCTTGTTTTTCAGTATAA+AGG | + | chr4.4:59272511-59272530 | None:intergenic | 25.0% |
| !!! | CATTTTTTTTAGCCTTCTAT+AGG | - | chr4.4:59272327-59272346 | MS.gene98659:intron | 25.0% |
| !!! | TCTTTTTTTGTTAACGAATG+AGG | - | chr4.4:59272973-59272992 | MS.gene98659:intron | 25.0% |
| AACCAAAAATGGAGTTAAAC+AGG | - | chr4.4:59274446-59274465 | MS.gene98659:intron | 30.0% | |
| AAGAGCTTGAATATCATTGA+TGG | + | chr4.4:59274880-59274899 | None:intergenic | 30.0% | |
| ACAACCTACATAGTAATTTG+AGG | + | chr4.4:59272945-59272964 | None:intergenic | 30.0% | |
| ACGTCTATTACATGTTCTTT+AGG | + | chr4.4:59274321-59274340 | None:intergenic | 30.0% | |
| AGTACATACTCAGAAACTAT+AGG | - | chr4.4:59273848-59273867 | MS.gene98659:intron | 30.0% | |
| ATAAAGTTCAGTTTGAAGAG+AGG | - | chr4.4:59275196-59275215 | MS.gene98659:intron | 30.0% | |
| CATGTTTGGGAATTATAAAC+AGG | - | chr4.4:59274979-59274998 | MS.gene98659:intron | 30.0% | |
| CTGTTTATAATTCCCAAACA+TGG | + | chr4.4:59274981-59275000 | None:intergenic | 30.0% | |
| CTTCTAACTAAAACCATGTT+TGG | - | chr4.4:59274965-59274984 | MS.gene98659:intron | 30.0% | |
| GAAAAAATATATTGTGCCTC+AGG | - | chr4.4:59275151-59275170 | MS.gene98659:intron | 30.0% | |
| GAAAAACAAGACTCTTAGAT+GGG | - | chr4.4:59272518-59272537 | MS.gene98659:intron | 30.0% | |
| GACTAAACACTAATTCTTAG+TGG | + | chr4.4:59274820-59274839 | None:intergenic | 30.0% | |
| GGCAAAAATTGAAAATGGTA+TGG | + | chr4.4:59274246-59274265 | None:intergenic | 30.0% | |
| GTATGTTACCTTATGTAAGT+TGG | - | chr4.4:59273364-59273383 | MS.gene98659:intron | 30.0% | |
| TCTTAATGCTGAATTACTAG+TGG | - | chr4.4:59273065-59273084 | MS.gene98659:intron | 30.0% | |
| TGAAAAACAAGACTCTTAGA+TGG | - | chr4.4:59272517-59272536 | MS.gene98659:intron | 30.0% | |
| TTATTATTTGGAGAAAGCTG+TGG | - | chr4.4:59273336-59273355 | MS.gene98659:intron | 30.0% | |
| TTGATTTATATACATACGGC+AGG | - | chr4.4:59272382-59272401 | MS.gene98659:intron | 30.0% | |
| ! | CACTGTACTTTTATGTTTTC+TGG | - | chr4.4:59275070-59275089 | MS.gene98659:CDS | 30.0% |
| ! | TGACTCAAACTTTTCATGTT+TGG | + | chr4.4:59272889-59272908 | None:intergenic | 30.0% |
| ! | TTTGAGACTGTTGAAGTTAT+GGG | + | chr4.4:59274926-59274945 | None:intergenic | 30.0% |
| ! | TTTGAGCTTGTAACTTTTGT+TGG | - | chr4.4:59272606-59272625 | MS.gene98659:intron | 30.0% |
| !! | CAATCTTTGTTGGCTTTATA+TGG | - | chr4.4:59275040-59275059 | MS.gene98659:CDS | 30.0% |
| !! | CGTATTTAAGAAGCTTGTTT+TGG | - | chr4.4:59272142-59272161 | MS.gene98659:intron | 30.0% |
| !! | GAGTATTTTAGATTATCCCT+TGG | - | chr4.4:59274642-59274661 | MS.gene98659:intron | 30.0% |
| !! | GTTGAAGTTATGGGTTTTAA+AGG | + | chr4.4:59274917-59274936 | None:intergenic | 30.0% |
| !! | TTGGTTTGGTTGTAATTGTA+TGG | - | chr4.4:59272161-59272180 | MS.gene98659:intron | 30.0% |
| !! | TTTTTAATTGGTGTACTGGT+AGG | + | chr4.4:59273893-59273912 | None:intergenic | 30.0% |
| !!! | ATATTTTTGGAGACAGAATG+AGG | - | chr4.4:59273288-59273307 | MS.gene98659:intron | 30.0% |
| !!! | CTACTTTTTAATTGGTGTAC+TGG | + | chr4.4:59273897-59273916 | None:intergenic | 30.0% |
| !!! | TTAAGAAGCTTGTTTTGGTT+TGG | - | chr4.4:59272147-59272166 | MS.gene98659:intron | 30.0% |
| AATGCTTAATACACAGTGCA+AGG | + | chr4.4:59273604-59273623 | None:intergenic | 35.0% | |
| ACCTACATAGTAATTTGAGG+AGG | + | chr4.4:59272942-59272961 | None:intergenic | 35.0% | |
| ACTTCAACAGTCTCAAACTA+TGG | - | chr4.4:59274929-59274948 | MS.gene98659:intron | 35.0% | |
| AGAAAAATCATCTCCAGTCA+AGG | + | chr4.4:59272253-59272272 | None:intergenic | 35.0% | |
| AGGCATGGATGAATGAATAA+TGG | + | chr4.4:59272922-59272941 | None:intergenic | 35.0% | |
| ATTAGTAGAAGCAGCAGATA+TGG | - | chr4.4:59272763-59272782 | MS.gene98659:intron | 35.0% | |
| GACAAGATCCAACTTACATA+AGG | + | chr4.4:59273375-59273394 | None:intergenic | 35.0% | |
| GATGTGATCTTGGATTCAAA+TGG | - | chr4.4:59275314-59275333 | MS.gene98659:intron | 35.0% | |
| GCACAGTTTACACTTGAAAA+TGG | + | chr4.4:59272581-59272600 | None:intergenic | 35.0% | |
| TAGCCGCGAAAATGATAAAA+AGG | - | chr4.4:59272211-59272230 | MS.gene98659:intron | 35.0% | |
| TCAAATATACAGCACCCAAA+AGG | + | chr4.4:59273470-59273489 | None:intergenic | 35.0% | |
| TCATGTTCTGCATTCACTTT+AGG | - | chr4.4:59273703-59273722 | MS.gene98659:intron | 35.0% | |
| TCTAGAAAAAACGCAGAGTT+AGG | + | chr4.4:59274125-59274144 | None:intergenic | 35.0% | |
| TGCGAGGCAAAAATTGAAAA+TGG | + | chr4.4:59274251-59274270 | None:intergenic | 35.0% | |
| TTAGTAGAAGCAGCAGATAT+GGG | - | chr4.4:59272764-59272783 | MS.gene98659:intron | 35.0% | |
| TTGGCTATCTGCATACAAAA+TGG | - | chr4.4:59273021-59273040 | MS.gene98659:intron | 35.0% | |
| TTTCTCCTACAGTGCAAAAT+TGG | - | chr4.4:59272643-59272662 | MS.gene98659:intron | 35.0% | |
| ! | ATACGGCAGGTCAAATTTTT+GGG | - | chr4.4:59272395-59272414 | MS.gene98659:intron | 35.0% |
| ! | GGACCTTTTTATCATTTTCG+CGG | + | chr4.4:59272217-59272236 | None:intergenic | 35.0% |
| ! | GTTTGAGACTGTTGAAGTTA+TGG | + | chr4.4:59274927-59274946 | None:intergenic | 35.0% |
| ! | TGCCTGTTTAACTCCATTTT+TGG | + | chr4.4:59274451-59274470 | None:intergenic | 35.0% |
| ! | TTTTCTTTTGCCATCTCTAC+TGG | + | chr4.4:59275271-59275290 | None:intergenic | 35.0% |
| !!! | TTATGTTTTCTGGCTGATTC+TGG | - | chr4.4:59275080-59275099 | MS.gene98659:CDS | 35.0% |
| !!! | TTGTTTGTTTTAAGGCCTGT+TGG | + | chr4.4:59275023-59275042 | None:intergenic | 35.0% |
| AACTTCGTCATATCCTTGAC+TGG | - | chr4.4:59272237-59272256 | MS.gene98659:intron | 40.0% | |
| AAGATATTGCTTCGGCATTG+TGG | - | chr4.4:59273508-59273527 | MS.gene98659:intron | 40.0% | |
| AAGCAAGCGACAACCAAAAA+TGG | - | chr4.4:59274435-59274454 | MS.gene98659:intron | 40.0% | |
| AATCTTGCATGTAGGAAAGC+CGG | - | chr4.4:59272668-59272687 | MS.gene98659:intron | 40.0% | |
| AATTGGCCAATCTTGCATGT+AGG | - | chr4.4:59272660-59272679 | MS.gene98659:intron | 40.0% | |
| ACGAATGAGGTATATGACCT+TGG | - | chr4.4:59272986-59273005 | MS.gene98659:intron | 40.0% | |
| ACTGTCGTATAGAGTGAACT+TGG | + | chr4.4:59272424-59272443 | None:intergenic | 40.0% | |
| ACTTACTTGCTCTACGCTTA+TGG | - | chr4.4:59272055-59272074 | MS.gene98659:CDS | 40.0% | |
| AGCAGTGAAGCACAGAAAAA+AGG | + | chr4.4:59274529-59274548 | None:intergenic | 40.0% | |
| AGGCAGAAATATCGTGTTCT+CGG | - | chr4.4:59274284-59274303 | MS.gene98659:intron | 40.0% | |
| AGTCAAGGATATGACGAAGT+TGG | + | chr4.4:59272238-59272257 | None:intergenic | 40.0% | |
| ATAACCAAGTGCAGCAAGAA+AGG | + | chr4.4:59273789-59273808 | None:intergenic | 40.0% | |
| ATCTGCATACAAAATGGCCT+GGG | - | chr4.4:59273027-59273046 | MS.gene98659:intron | 40.0% | |
| ATGAAAAAGATGCGTGTGCT+CGG | + | chr4.4:59274162-59274181 | None:intergenic | 40.0% | |
| ATTGTCATTCTCAGCATCGT+CGG | - | chr4.4:59272092-59272111 | MS.gene98659:CDS | 40.0% | |
| CAAGACACATTAATGCCAAC+AGG | - | chr4.4:59275005-59275024 | MS.gene98659:CDS | 40.0% | |
| CACTGTGTTTGAAAAAGGGA+TGG | + | chr4.4:59271960-59271979 | None:intergenic | 40.0% | |
| CATAGTAATTTGAGGAGGCA+TGG | + | chr4.4:59272937-59272956 | None:intergenic | 40.0% | |
| CTGAATTACTAGTGGTTCCT+TGG | - | chr4.4:59273073-59273092 | MS.gene98659:intron | 40.0% | |
| GCCTCCTCAAATTACTATGT+AGG | - | chr4.4:59272938-59272957 | MS.gene98659:intron | 40.0% | |
| GTCATTTAAGAGTTGAGGTG+AGG | - | chr4.4:59272816-59272835 | MS.gene98659:intron | 40.0% | |
| GTGGAAGAAAAGCCTATAGA+AGG | + | chr4.4:59272342-59272361 | None:intergenic | 40.0% | |
| GTTCAGTTTGAAGAGAGGTT+CGG | - | chr4.4:59275201-59275220 | MS.gene98659:intron | 40.0% | |
| TAAAGGTCTCAAATGAGCCT+TGG | + | chr4.4:59272494-59272513 | None:intergenic | 40.0% | |
| TATCTGCATACAAAATGGCC+TGG | - | chr4.4:59273026-59273045 | MS.gene98659:intron | 40.0% | |
| TGCAATTGATCCAGTAGAGA+TGG | - | chr4.4:59275258-59275277 | MS.gene98659:intron | 40.0% | |
| TTGTGAGTATTATAAGGGGG+TGG | + | chr4.4:59272361-59272380 | None:intergenic | 40.0% | |
| TTTCAGATAGCTGCAAAAGC+AGG | - | chr4.4:59275292-59275311 | MS.gene98659:intron | 40.0% | |
| TTTCTTGCTGCACTTGGTTA+TGG | - | chr4.4:59273788-59273807 | MS.gene98659:CDS | 40.0% | |
| ! | ATTGGCCAATTTTGCACTGT+AGG | + | chr4.4:59272651-59272670 | None:intergenic | 40.0% |
| ! | CATACGGCAGGTCAAATTTT+TGG | - | chr4.4:59272394-59272413 | MS.gene98659:intron | 40.0% |
| ! | CCAGATGCTCTTTACCTTTT+GGG | - | chr4.4:59273453-59273472 | MS.gene98659:intron | 40.0% |
| ! | GAGCTTGTAACTTTTGTTGG+TGG | - | chr4.4:59272609-59272628 | MS.gene98659:intron | 40.0% |
| ! | GGGTTGTCATTTAAGAGTTG+AGG | - | chr4.4:59272811-59272830 | MS.gene98659:intron | 40.0% |
| ! | TACGGCAGGTCAAATTTTTG+GGG | - | chr4.4:59272396-59272415 | MS.gene98659:intron | 40.0% |
| ! | TCCAGATGCTCTTTACCTTT+TGG | - | chr4.4:59273452-59273471 | MS.gene98659:intron | 40.0% |
| ! | TGATCTCGCAATCTTGTTGT+TGG | - | chr4.4:59272722-59272741 | MS.gene98659:intron | 40.0% |
| ! | TTGGATTCAAATGGCTTGCA+AGG | - | chr4.4:59275323-59275342 | MS.gene98659:intron | 40.0% |
| ! | TTGGGTGCTGTATATTTGAC+TGG | - | chr4.4:59273471-59273490 | MS.gene98659:intron | 40.0% |
| !! | GAACAATCCAGCCGATTTTA+CGG | - | chr4.4:59274197-59274216 | MS.gene98659:intron | 40.0% |
| !! | TCTGCATTCACTTTAGGACT+TGG | - | chr4.4:59273709-59273728 | MS.gene98659:intron | 40.0% |
| !!! | TCTGCGTTTTTTCTAGAACC+AGG | - | chr4.4:59274128-59274147 | MS.gene98659:intron | 40.0% |
| !!! | TTCTGGAATTTTGACACCTG+AGG | + | chr4.4:59275170-59275189 | None:intergenic | 40.0% |
| AAGTGCAGCAAGAAAGGAAG+TGG | + | chr4.4:59273783-59273802 | None:intergenic | 45.0% | |
| ACTTCCTTTCTTGCTGCACT+TGG | - | chr4.4:59273782-59273801 | MS.gene98659:CDS | 45.0% | |
| AGTGCAGCAAGAAAGGAAGT+GGG | + | chr4.4:59273782-59273801 | None:intergenic | 45.0% | |
| ATTTGACATGGTACCAGAGC+AGG | - | chr4.4:59274489-59274508 | MS.gene98659:CDS | 45.0% | |
| CCTGATGCACAGTATGCATT+GGG | - | chr4.4:59272791-59272810 | MS.gene98659:intron | 45.0% | |
| GAAAATGGCCCATGAAGTCA+GGG | + | chr4.4:59272566-59272585 | None:intergenic | 45.0% | |
| GACGTCAATAGCTTAGATGC+TGG | - | chr4.4:59274336-59274355 | MS.gene98659:intron | 45.0% | |
| GCAAAAGCAGGATGTGATCT+TGG | - | chr4.4:59275304-59275323 | MS.gene98659:intron | 45.0% | |
| GGCATTGTGGTGTTTCCATA+GGG | - | chr4.4:59273521-59273540 | MS.gene98659:intron | 45.0% | |
| GGCTTTCCTACATGCAAGAT+TGG | + | chr4.4:59272669-59272688 | None:intergenic | 45.0% | |
| GTCGCTTGCTTAATCTGATC+AGG | + | chr4.4:59274426-59274445 | None:intergenic | 45.0% | |
| TCAGAATCAAGATCCTACCC+AGG | - | chr4.4:59273949-59273968 | MS.gene98659:CDS | 45.0% | |
| TCCTGATGCACAGTATGCAT+TGG | - | chr4.4:59272790-59272809 | MS.gene98659:intron | 45.0% | |
| TGAAAAAGATGCGTGTGCTC+GGG | + | chr4.4:59274161-59274180 | None:intergenic | 45.0% | |
| TGAAAATGGCCCATGAAGTC+AGG | + | chr4.4:59272567-59272586 | None:intergenic | 45.0% | |
| TGAGGTATATGACCTTGGTG+AGG | - | chr4.4:59272991-59273010 | MS.gene98659:intron | 45.0% | |
| TTACCTTCTCTGATGCCCTA+TGG | + | chr4.4:59273539-59273558 | None:intergenic | 45.0% | |
| TTTGGAGAAAGCTGTGGATC+AGG | - | chr4.4:59273342-59273361 | MS.gene98659:intron | 45.0% | |
| ! | CAAATGGCTTGCAAGGTTAG+AGG | - | chr4.4:59275330-59275349 | MS.gene98659:intron | 45.0% |
| ! | TTTCCATAGGGCATCAGAGA+AGG | - | chr4.4:59273533-59273552 | MS.gene98659:intron | 45.0% |
| !! | AAAGAGCATCTGGATGCAAC+TGG | + | chr4.4:59273446-59273465 | None:intergenic | 45.0% |
| !! | AGATGGGAAGAGCATCACAA+TGG | - | chr4.4:59272534-59272553 | MS.gene98659:intron | 45.0% |
| !! | AGCCGATTTTACGGCTTTGT+CGG | - | chr4.4:59274206-59274225 | MS.gene98659:intron | 45.0% |
| !! | CCCAAAAGGTAAAGAGCATC+TGG | + | chr4.4:59273456-59273475 | None:intergenic | 45.0% |
| !! | GAAGAGCATCACAATGGTTG+GGG | - | chr4.4:59272540-59272559 | MS.gene98659:intron | 45.0% |
| !! | GGAAGAGCATCACAATGGTT+GGG | - | chr4.4:59272539-59272558 | MS.gene98659:intron | 45.0% |
| !! | TCTTGTTGTTGGCAACAGAG+CGG | - | chr4.4:59272733-59272752 | MS.gene98659:intron | 45.0% |
| !!! | GTTTTCTGGCTGATTCTGGT+GGG | - | chr4.4:59275084-59275103 | MS.gene98659:CDS | 45.0% |
| !!! | TGTTTTCTGGCTGATTCTGG+TGG | - | chr4.4:59275083-59275102 | MS.gene98659:CDS | 45.0% |
| !! | CATAATTAATTTATTTATTT+AGG | - | chr4.4:59274779-59274798 | MS.gene98659:intron | 5.0% |
| !!! | TGTTTTAATATATATATTTT+TGG | - | chr4.4:59273275-59273294 | MS.gene98659:intron | 5.0% |
| AAAGGAAGTGGGGATGGGAT+CGG | + | chr4.4:59273771-59273790 | None:intergenic | 50.0% | |
| AGCAAGAAAGGAAGTGGGGA+TGG | + | chr4.4:59273777-59273796 | None:intergenic | 50.0% | |
| ATCAAGATCCTACCCAGGAC+CGG | - | chr4.4:59273954-59273973 | MS.gene98659:CDS | 50.0% | |
| CACAGAATCAGAACCTGCTC+TGG | + | chr4.4:59274505-59274524 | None:intergenic | 50.0% | |
| CCCAATGCATACTGTGCATC+AGG | + | chr4.4:59272794-59272813 | None:intergenic | 50.0% | |
| CGCCGACAAAGCCGTAAAAT+CGG | + | chr4.4:59274211-59274230 | None:intergenic | 50.0% | |
| CGGCATTGTGGTGTTTCCAT+AGG | - | chr4.4:59273520-59273539 | MS.gene98659:intron | 50.0% | |
| CGGGCAAGACATAAGAACCA+AGG | + | chr4.4:59273093-59273112 | None:intergenic | 50.0% | |
| GAACACATGATATCCCACCC+AGG | + | chr4.4:59273047-59273066 | None:intergenic | 50.0% | |
| GACAAAGCCGTAAAATCGGC+TGG | + | chr4.4:59274207-59274226 | None:intergenic | 50.0% | |
| GCAAGAAAGGAAGTGGGGAT+GGG | + | chr4.4:59273776-59273795 | None:intergenic | 50.0% | |
| GCATACAAAATGGCCTGGGT+GGG | - | chr4.4:59273031-59273050 | MS.gene98659:intron | 50.0% | |
| GGTATATGACCTTGGTGAGG+AGG | - | chr4.4:59272994-59273013 | MS.gene98659:intron | 50.0% | |
| GGTTAGAGGAGGAAGAGAAG+CGG | - | chr4.4:59275344-59275363 | MS.gene98659:intron | 50.0% | |
| GTGCAGCAAGAAAGGAAGTG+GGG | + | chr4.4:59273781-59273800 | None:intergenic | 50.0% | |
| TATGACCTTGGTGAGGAGGA+TGG | - | chr4.4:59272998-59273017 | MS.gene98659:intron | 50.0% | |
| TGCATACAAAATGGCCTGGG+TGG | - | chr4.4:59273030-59273049 | MS.gene98659:intron | 50.0% | |
| TGCGAGATCAGCGTAGTACA+TGG | + | chr4.4:59272712-59272731 | None:intergenic | 50.0% | |
| TTTCTGTGCTTCACTGCTGC+CGG | - | chr4.4:59274531-59274550 | MS.gene98659:CDS | 50.0% | |
| ! | ATGGCTTGCAAGGTTAGAGG+AGG | - | chr4.4:59275333-59275352 | MS.gene98659:intron | 50.0% |
| !! | GGGAAGAGCATCACAATGGT+TGG | - | chr4.4:59272538-59272557 | MS.gene98659:intron | 50.0% |
| AATGAGCCTTGGCTCAGTGC+TGG | + | chr4.4:59272483-59272502 | None:intergenic | 55.0% | |
| ACCTTGGTGAGGAGGATGGT+TGG | - | chr4.4:59273002-59273021 | MS.gene98659:intron | 55.0% | |
| TCAAGATCCTACCCAGGACC+GGG | - | chr4.4:59273955-59273974 | MS.gene98659:CDS | 55.0% | |
| !! | GGTGGGTTGCTTGCATCTCT+AGG | - | chr4.4:59275101-59275120 | MS.gene98659:intron | 55.0% |
| AAGACCTAGTGCCCCCTTCC+CGG | + | chr4.4:59273976-59273995 | None:intergenic | 60.0% | |
| ATCCTACCCAGGACCGGGAA+GGG | - | chr4.4:59273960-59273979 | MS.gene98659:CDS | 60.0% | |
| CCAAGCGAAAATGCTGCCGC+CGG | + | chr4.4:59274553-59274572 | None:intergenic | 60.0% | |
| GCCAACCATCCTCCTCACCA+AGG | + | chr4.4:59273006-59273025 | None:intergenic | 60.0% | |
| GGTTCGGCTGCTCAAATGCG+AGG | - | chr4.4:59275217-59275236 | MS.gene98659:intron | 60.0% | |
| GGTTGGGGCCCTGACTTCAT+GGG | - | chr4.4:59272555-59272574 | MS.gene98659:intron | 60.0% | |
| TGGGGATGGGATCGGATGCA+TGG | + | chr4.4:59273763-59273782 | None:intergenic | 60.0% | |
| TGGTTGGGGCCCTGACTTCA+TGG | - | chr4.4:59272554-59272573 | MS.gene98659:intron | 60.0% | |
| ! | CCTTCACCAGCACTGAGCCA+AGG | - | chr4.4:59272474-59272493 | MS.gene98659:intron | 60.0% |
| !! | CCTTGGCTCAGTGCTGGTGA+AGG | + | chr4.4:59272477-59272496 | None:intergenic | 60.0% |
| !! | GGGGGCACTAGGTCTTAGCA+CGG | - | chr4.4:59273980-59273999 | MS.gene98659:CDS | 60.0% |
| CCTCTGAGCAAGCTCGTGCG+AGG | + | chr4.4:59274267-59274286 | None:intergenic | 65.0% | |
| CTGTGCTTCACTGCTGCCGG+CGG | - | chr4.4:59274534-59274553 | MS.gene98659:intron | 65.0% | |
| GATCCTACCCAGGACCGGGA+AGG | - | chr4.4:59273959-59273978 | MS.gene98659:CDS | 65.0% | |
| TCCTACCCAGGACCGGGAAG+GGG | - | chr4.4:59273961-59273980 | MS.gene98659:CDS | 65.0% | |
| ! | CCGGCGGCAGCATTTTCGCT+TGG | - | chr4.4:59274550-59274569 | MS.gene98659:intron | 65.0% |
| ! | CCTCGCACGAGCTTGCTCAG+AGG | - | chr4.4:59274264-59274283 | MS.gene98659:intron | 65.0% |
| AGTGCCCCCTTCCCGGTCCT+GGG | + | chr4.4:59273969-59273988 | None:intergenic | 70.0% | |
| CCTACCCAGGACCGGGAAGG+GGG | - | chr4.4:59273962-59273981 | MS.gene98659:CDS | 70.0% | |
| GTGTGCTCGGGAACGCGACC+TGG | + | chr4.4:59274149-59274168 | None:intergenic | 70.0% | |
| TAGTGCCCCCTTCCCGGTCC+TGG | + | chr4.4:59273970-59273989 | None:intergenic | 70.0% | |
| !! | AGGACCGGGAAGGGGGCACT+AGG | - | chr4.4:59273969-59273988 | MS.gene98659:CDS | 70.0% |
| CCCCCTTCCCGGTCCTGGGT+AGG | + | chr4.4:59273965-59273984 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 59271916 | 59275387 | 59271916 | ID=MS.gene98659 |
| chr4.4 | mRNA | 59271916 | 59275387 | 59271916 | ID=MS.gene98659.t1;Parent=MS.gene98659 |
| chr4.4 | exon | 59275372 | 59275387 | 59275372 | ID=MS.gene98659.t1.exon1;Parent=MS.gene98659.t1 |
| chr4.4 | CDS | 59275372 | 59275387 | 59275372 | ID=cds.MS.gene98659.t1;Parent=MS.gene98659.t1 |
| chr4.4 | exon | 59274999 | 59275116 | 59274999 | ID=MS.gene98659.t1.exon2;Parent=MS.gene98659.t1 |
| chr4.4 | CDS | 59274999 | 59275116 | 59274999 | ID=cds.MS.gene98659.t1;Parent=MS.gene98659.t1 |
| chr4.4 | exon | 59274471 | 59274552 | 59274471 | ID=MS.gene98659.t1.exon3;Parent=MS.gene98659.t1 |
| chr4.4 | CDS | 59274471 | 59274552 | 59274471 | ID=cds.MS.gene98659.t1;Parent=MS.gene98659.t1 |
| chr4.4 | exon | 59273940 | 59273999 | 59273940 | ID=MS.gene98659.t1.exon4;Parent=MS.gene98659.t1 |
| chr4.4 | CDS | 59273940 | 59273999 | 59273940 | ID=cds.MS.gene98659.t1;Parent=MS.gene98659.t1 |
| chr4.4 | exon | 59273749 | 59273856 | 59273749 | ID=MS.gene98659.t1.exon5;Parent=MS.gene98659.t1 |
| chr4.4 | CDS | 59273749 | 59273856 | 59273749 | ID=cds.MS.gene98659.t1;Parent=MS.gene98659.t1 |
| chr4.4 | exon | 59273573 | 59273606 | 59273573 | ID=MS.gene98659.t1.exon6;Parent=MS.gene98659.t1 |
| chr4.4 | CDS | 59273573 | 59273606 | 59273573 | ID=cds.MS.gene98659.t1;Parent=MS.gene98659.t1 |
| chr4.4 | exon | 59271916 | 59272130 | 59271916 | ID=MS.gene98659.t1.exon7;Parent=MS.gene98659.t1 |
| chr4.4 | CDS | 59271916 | 59272130 | 59271916 | ID=cds.MS.gene98659.t1;Parent=MS.gene98659.t1 |
| Gene Sequence |
| Protein sequence |
