AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98720.t1 MTR_2g098880 95.635 252 11 0 1 252 1 252 0.0 500
MS.gene98720.t1 MTR_2g098880 95.635 252 11 0 1 252 13 264 0.0 499
MS.gene98720.t1 MTR_3g006370 36.269 193 103 5 55 243 44 220 4.02e-35 125
MS.gene98720.t1 MTR_2g098920 37.634 186 101 5 60 243 79 251 5.85e-34 123
MS.gene98720.t1 MTR_4g067290 37.222 180 103 4 60 239 55 224 1.35e-31 116
MS.gene98720.t1 MTR_4g067290 37.222 180 103 4 60 239 75 244 1.44e-31 117
MS.gene98720.t1 MTR_4g067290 37.222 180 103 4 60 239 115 284 5.24e-31 116
MS.gene98720.t1 MTR_4g067290 37.158 183 97 6 60 239 55 222 1.05e-30 114
MS.gene98720.t1 MTR_4g067290 37.158 183 97 6 60 239 73 240 1.39e-30 114
MS.gene98720.t1 MTR_4g067290 37.158 183 97 6 60 239 75 242 1.39e-30 114
MS.gene98720.t1 MTR_7g028855 32.941 170 98 6 11 170 65 228 4.32e-12 65.9
MS.gene98720.t1 MTR_1g057920 33.884 121 71 4 32 151 11 123 1.78e-11 60.5
MS.gene98720.t1 MTR_1g070355 33.333 102 66 2 65 165 78 178 3.18e-11 63.2
MS.gene98720.t1 MTR_2g070590 34.286 105 66 2 61 164 17 119 6.88e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98720.t1 AT2G43280 43.077 195 89 6 54 243 15 192 7.73e-42 142
MS.gene98720.t1 AT3G07500 39.894 188 106 3 56 243 28 208 1.68e-39 136
MS.gene98720.t1 AT2G43280 44.509 173 74 6 76 243 2 157 1.63e-37 130
MS.gene98720.t1 AT3G59470 35.586 222 124 7 31 244 32 242 3.65e-35 126
MS.gene98720.t1 AT3G59470 35.586 222 124 7 31 244 32 242 3.65e-35 126
MS.gene98720.t1 AT3G59470 35.586 222 124 7 31 244 44 254 3.87e-35 126
MS.gene98720.t1 AT4G12850 34.783 184 104 4 60 243 10 177 4.71e-33 119
MS.gene98720.t1 AT4G38180 44.262 122 67 1 50 170 62 183 1.15e-23 100
MS.gene98720.t1 AT4G12850 39.048 105 59 1 60 164 10 109 4.98e-22 89.0
MS.gene98720.t1 AT4G12850 39.048 105 59 1 60 164 10 109 5.12e-22 89.0
MS.gene98720.t1 AT5G18960 42.453 106 46 1 59 164 41 131 5.04e-21 92.4
MS.gene98720.t1 AT5G18960 35.238 105 53 1 60 164 210 299 2.61e-15 75.5
MS.gene98720.t1 AT5G18960 42.453 106 46 1 59 164 41 131 5.04e-21 92.4
MS.gene98720.t1 AT5G18960 35.238 105 53 1 60 164 210 299 2.61e-15 75.5
MS.gene98720.t1 AT3G06250 41.509 106 47 1 59 164 26 116 2.83e-20 90.1
MS.gene98720.t1 AT3G06250 36.066 122 59 2 43 164 176 278 1.12e-16 79.7
MS.gene98720.t1 AT3G06250 41.509 106 47 1 59 164 26 116 2.83e-20 90.1
MS.gene98720.t1 AT3G06250 36.066 122 59 2 43 164 176 278 1.12e-16 79.7
MS.gene98720.t1 AT3G06250 41.509 106 47 1 59 164 26 116 2.83e-20 90.1
MS.gene98720.t1 AT3G06250 36.066 122 59 2 43 164 176 278 1.12e-16 79.7
MS.gene98720.t1 AT2G27110 32.044 181 85 5 41 200 28 191 5.34e-15 74.7
MS.gene98720.t1 AT2G27110 32.044 181 85 5 41 200 28 191 5.34e-15 74.7
MS.gene98720.t1 AT3G22170 31.707 123 73 1 59 170 68 190 1.43e-14 73.6
MS.gene98720.t1 AT3G22170 31.707 123 73 1 59 170 68 190 1.43e-14 73.6
MS.gene98720.t1 AT2G32250 34.653 101 61 1 64 164 41 136 1.56e-13 70.5
MS.gene98720.t1 AT2G32250 34.653 101 61 1 64 164 41 136 1.58e-13 70.5
MS.gene98720.t1 AT2G32250 34.653 101 61 1 64 164 41 136 1.58e-13 70.5
MS.gene98720.t1 AT2G32250 34.653 101 61 1 64 164 41 136 1.63e-13 70.5
MS.gene98720.t1 AT2G32250 34.653 101 61 1 64 164 41 136 1.63e-13 70.5
MS.gene98720.t1 AT2G32250 34.653 101 61 1 64 164 41 136 1.63e-13 70.5
MS.gene98720.t1 AT4G19990 31.579 114 67 1 64 166 24 137 7.96e-13 68.2
MS.gene98720.t1 AT4G19990 31.579 114 67 1 64 166 24 137 7.96e-13 68.2
MS.gene98720.t1 AT4G19990 31.579 114 67 1 64 166 38 151 8.00e-13 68.2
MS.gene98720.t1 AT4G19990 31.579 114 67 1 64 166 24 137 8.03e-13 68.2
MS.gene98720.t1 AT4G19990 31.579 114 67 1 64 166 24 137 8.72e-13 68.2
MS.gene98720.t1 AT4G19990 31.579 114 67 1 64 166 24 137 8.72e-13 68.2
MS.gene98720.t1 AT2G32250 34.000 100 61 1 65 164 1 95 1.25e-12 67.8
MS.gene98720.t1 AT2G32250 34.000 100 61 1 65 164 1 95 1.27e-12 67.8
MS.gene98720.t1 AT1G76320 30.159 126 82 2 65 190 1 120 2.49e-12 66.6
MS.gene98720.t1 AT1G76320 30.159 126 82 2 65 190 1 120 2.49e-12 66.6
MS.gene98720.t1 AT1G76320 32.673 101 63 1 65 165 1 96 2.51e-12 66.6
MS.gene98720.t1 AT1G76320 30.159 126 82 2 65 190 1 120 2.56e-12 66.6
MS.gene98720.t1 AT1G80010 33.654 104 63 1 61 164 95 192 4.55e-12 65.9
MS.gene98720.t1 AT4G15090 31.776 107 71 1 59 165 49 153 4.84e-12 65.9
MS.gene98720.t1 AT4G15090 31.776 107 71 1 59 165 49 153 4.84e-12 65.9
MS.gene98720.t1 AT4G15090 31.776 107 71 1 59 165 49 153 4.84e-12 65.9
MS.gene98720.t1 AT4G15090 31.776 107 71 1 59 165 49 153 4.84e-12 65.9
MS.gene98720.t1 AT4G15090 31.776 107 71 1 59 165 49 153 4.84e-12 65.9
MS.gene98720.t1 AT1G52520 32.692 104 64 1 61 164 85 182 9.14e-12 65.1

Find 62 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGATAAGGTTGGCTTTAC+GGG 0.249268 2.1:-5560534 MS.gene98720:CDS
TGTATGTTCCTTCACAAATT+TGG 0.258446 2.1:+5560490 None:intergenic
CCATGATAAGGTTGGCTTTA+CGG 0.274945 2.1:-5560535 MS.gene98720:CDS
TCTCGGGTGGCTGGTGGAGG+AGG 0.303392 2.1:+5560569 None:intergenic
CCTCAATCTCTCTGATATTT+CGG 0.319830 2.1:+5559452 None:intergenic
AAATACAATTCTGAACGATT+TGG 0.340360 2.1:-5559518 MS.gene98720:CDS
TTACTCGCGAACGGCGGTTA+TGG 0.347299 2.1:+5560678 None:intergenic
CGAGTAAATAACAAGCTAAT+TGG 0.351629 2.1:-5560662 MS.gene98720:CDS
TCATGGCTTGACAACCTTCT+CGG 0.378795 2.1:+5560552 None:intergenic
CCTTCTCGGGTGGCTGGTGG+AGG 0.389419 2.1:+5560566 None:intergenic
GAAGTTCCATGGCGAGGATC+CGG 0.395395 2.1:-5560446 MS.gene98720:CDS
CTCACTAACCAAGTGCTTCC+CGG 0.404686 2.1:+5560427 None:intergenic
CATGGCTTGACAACCTTCTC+GGG 0.412731 2.1:+5560553 None:intergenic
TGACAACCTTCTCGGGTGGC+TGG 0.424878 2.1:+5560560 None:intergenic
TCCTCGCCATGGAACTTCAC+TGG 0.443266 2.1:+5560451 None:intergenic
AGGATGATGGATCACCAATC+TGG 0.443741 2.1:-5560953 MS.gene98720:CDS
GACACATTAGAACCATTCAT+AGG 0.454194 2.1:-5560782 MS.gene98720:CDS
TGTCACAGGACGAGAAAGAT+AGG 0.454669 2.1:-5559621 MS.gene98720:intron
AATCAAATCCCTGGCCAGAT+TGG 0.455766 2.1:+5560939 None:intergenic
CGAACAACCTGTAGCAGATT+CGG 0.459103 2.1:-5560804 MS.gene98720:CDS
CCGAAATATCAGAGAGATTG+AGG 0.462386 2.1:-5559452 MS.gene98720:CDS
CTCGGGTGGCTGGTGGAGGA+GGG 0.466145 2.1:+5560570 None:intergenic
GATGGATCACCAATCTGGCC+AGG 0.492007 2.1:-5560948 MS.gene98720:CDS
CAACCTTCTCGGGTGGCTGG+TGG 0.497367 2.1:+5560563 None:intergenic
AGGTTGGCTTTACGGGATGA+AGG 0.498475 2.1:-5560527 MS.gene98720:CDS
AAGTTCCATGGCGAGGATCC+GGG 0.502060 2.1:-5560445 MS.gene98720:CDS
AAGGTTGTCAAGCCATGATA+AGG 0.504631 2.1:-5560547 MS.gene98720:CDS
ACGAAAGGCAAAAGTACAAA+AGG 0.509895 2.1:-5559567 MS.gene98720:CDS
CTTTACGGGATGAAGGGAAG+TGG 0.510166 2.1:-5560520 MS.gene98720:CDS
CCTCGCCATGGAACTTCACT+GGG 0.518653 2.1:+5560452 None:intergenic
AATGTGTCCGAATCTGCTAC+AGG 0.521451 2.1:+5560797 None:intergenic
AACAATTTAGAATTATGTAC+AGG 0.522470 2.1:-5560845 MS.gene98720:CDS
CGCTCGAGTTGCACAACGAA+AGG 0.523644 2.1:-5559582 MS.gene98720:CDS
CCGTAAAGCCAACCTTATCA+TGG 0.524530 2.1:+5560535 None:intergenic
GGCCAGGGATTTGATTCAGA+TGG 0.527040 2.1:-5560932 MS.gene98720:CDS
AATGGCCATGGTAGGAGGAT+AGG 0.534923 2.1:-5560719 MS.gene98720:CDS
GCGAGGATCCGGGAAGCACT+TGG 0.541373 2.1:-5560435 MS.gene98720:CDS
CCTCCACCAGCCACCCGAGA+AGG 0.543028 2.1:-5560566 MS.gene98720:CDS
TGCTTCCCGGATCCTCGCCA+TGG 0.557183 2.1:+5560440 None:intergenic
TTTACGGGATGAAGGGAAGT+GGG 0.561477 2.1:-5560519 MS.gene98720:CDS
AACCATCTGAATCAAATCCC+TGG 0.570761 2.1:+5560930 None:intergenic
GGTTGGCTTTACGGGATGAA+GGG 0.571058 2.1:-5560526 MS.gene98720:CDS
TAGGCATGCAGTTCAACTCA+AGG 0.572467 2.1:-5560763 MS.gene98720:CDS
TCTACAATGGCCATGGTAGG+AGG 0.572483 2.1:-5560724 MS.gene98720:CDS
GCTTGTTATTTACTCGCGAA+CGG 0.583871 2.1:+5560669 None:intergenic
GGAGGATAGGATTTACAGTA+CGG 0.583900 2.1:-5560706 MS.gene98720:CDS
AGAGAATTCTACAATGGCCA+TGG 0.595180 2.1:-5560731 MS.gene98720:CDS
TTGTCAAGCCATGATAAGGT+TGG 0.599156 2.1:-5560543 MS.gene98720:CDS
CCCAGTGAAGTTCCATGGCG+AGG 0.602502 2.1:-5560452 MS.gene98720:CDS
TAAATCCTATCCTCCTACCA+TGG 0.603101 2.1:+5560714 None:intergenic
TTGAACTGCATGCCTATGAA+TGG 0.604946 2.1:+5560770 None:intergenic
TGAGTCCCAGTGAAGTTCCA+TGG 0.607822 2.1:-5560457 MS.gene98720:CDS
ATGGATCACCAATCTGGCCA+GGG 0.613451 2.1:-5560947 MS.gene98720:CDS
AATTCTACAATGGCCATGGT+AGG 0.613869 2.1:-5560727 MS.gene98720:CDS
GGCTTGACAACCTTCTCGGG+TGG 0.617601 2.1:+5560556 None:intergenic
GGTTGTCACCAAATTTGTGA+AGG 0.624088 2.1:-5560498 MS.gene98720:CDS
CGGGAAGCACTTGGTTAGTG+AGG 0.627824 2.1:-5560426 MS.gene98720:intron
AGGCATGCAGTTCAACTCAA+GGG 0.634792 2.1:-5560762 MS.gene98720:CDS
TGTTATTTACTCGCGAACGG+CGG 0.635708 2.1:+5560672 None:intergenic
GCAACTCGAGCGATAGCTCA+CGG 0.642945 2.1:+5559593 None:intergenic
GAAGCAAGAGAATTCTACAA+TGG 0.657489 2.1:-5560737 MS.gene98720:CDS
CATGCAGTTCAACTCAAGGG+AGG 0.700261 2.1:-5560759 MS.gene98720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GACTATATTATGTATATTCT+TGG + chr2.1:5560508-5560527 None:intergenic 20.0%
!! TATCAAAATACAGATTCTTA+TGG - chr2.1:5560245-5560264 MS.gene98720:intron 20.0%
!!! AACAATTTAGAATTATGTAC+AGG - chr2.1:5559528-5559547 MS.gene98720:CDS 20.0%
!!! TTTTAGAATATCTTATCTCT+GGG - chr2.1:5560271-5560290 MS.gene98720:intron 20.0%
! AAATACAATTCTGAACGATT+TGG - chr2.1:5560855-5560874 MS.gene98720:CDS 25.0%
! GAAGAAAAATCAGATTTAGA+TGG - chr2.1:5560943-5560962 MS.gene98720:CDS 25.0%
! TAAACTATAAAGTGCACTAT+TGG + chr2.1:5559982-5560001 None:intergenic 25.0%
!! AGGATTGTATTAACTCTTTT+AGG - chr2.1:5560584-5560603 MS.gene98720:CDS 25.0%
!! GGATTGTATTAACTCTTTTA+GGG - chr2.1:5560585-5560604 MS.gene98720:CDS 25.0%
!!! CCTGTTTGAGATTTTTTTTA+GGG + chr2.1:5560567-5560586 None:intergenic 25.0%
!!! CTGTTTGAGATTTTTTTTAG+GGG + chr2.1:5560566-5560585 None:intergenic 25.0%
!!! CTTTTAGAATATCTTATCTC+TGG - chr2.1:5560270-5560289 MS.gene98720:intron 25.0%
!!! TCCTGTTTGAGATTTTTTTT+AGG + chr2.1:5560568-5560587 None:intergenic 25.0%
!!! TGTTTGAGATTTTTTTTAGG+GGG + chr2.1:5560565-5560584 None:intergenic 25.0%
!!! TTCTAGAATACCTTATCTAT+GGG - chr2.1:5560174-5560193 MS.gene98720:intron 25.0%
AAAAAGGAACAAACAGAACA+TGG + chr2.1:5560704-5560723 None:intergenic 30.0%
AAAAATCAGATTTAGATGGC+AGG - chr2.1:5560947-5560966 MS.gene98720:CDS 30.0%
AAATCAACAAGACAAGTTTG+AGG + chr2.1:5560731-5560750 None:intergenic 30.0%
ATTAAAAGTCCCATCTCAAT+CGG - chr2.1:5560609-5560628 MS.gene98720:CDS 30.0%
CCCTAAAAAAAATCTCAAAC+AGG - chr2.1:5560564-5560583 MS.gene98720:CDS 30.0%
CGAGTAAATAACAAGCTAAT+TGG - chr2.1:5559711-5559730 MS.gene98720:intron 30.0%
GAAAATTGTGAGTGAAAGTT+TGG + chr2.1:5560299-5560318 None:intergenic 30.0%
GTATAGTTCAGTTCTTTGTT+AGG - chr2.1:5560669-5560688 MS.gene98720:CDS 30.0%
TAGCAAAATACAGATTCTCA+TGG - chr2.1:5560148-5560167 MS.gene98720:intron 30.0%
TATGTATACCTGATCAAACT+TGG - chr2.1:5560013-5560032 MS.gene98720:intron 30.0%
TGTATGTTCCTTCACAAATT+TGG + chr2.1:5559886-5559905 None:intergenic 30.0%
! ACAAGTTTGAGGTAGAAAAA+AGG + chr2.1:5560720-5560739 None:intergenic 30.0%
! ATTCTTGGTGTAATATCGAT+AGG + chr2.1:5560493-5560512 None:intergenic 30.0%
! TAGCAAGAGAATTTAAGACA+TGG + chr2.1:5560445-5560464 None:intergenic 30.0%
!! CTTCTAGAATACCTTATCTA+TGG - chr2.1:5560173-5560192 MS.gene98720:intron 30.0%
CCTCAATCTCTCTGATATTT+CGG + chr2.1:5560924-5560943 None:intergenic 35.0%
GAAAAATGTGAGTGAAGGTT+TGG + chr2.1:5560202-5560221 None:intergenic 35.0%
GAAGCAAGAGAATTCTACAA+TGG - chr2.1:5559636-5559655 MS.gene98720:intron 35.0%
GACACATTAGAACCATTCAT+AGG - chr2.1:5559591-5559610 MS.gene98720:CDS 35.0%
TTACATGCAGATGTTGGATT+AGG - chr2.1:5560632-5560651 MS.gene98720:CDS 35.0%
TTCCACCTAAGATAGAATGA+GGG - chr2.1:5560467-5560486 MS.gene98720:CDS 35.0%
TTTCCACCTAAGATAGAATG+AGG - chr2.1:5560466-5560485 MS.gene98720:CDS 35.0%
! ACGAAAGGCAAAAGTACAAA+AGG - chr2.1:5560806-5560825 MS.gene98720:CDS 35.0%
! GATTTTGTCTGCTCAAAAGA+AGG - chr2.1:5559738-5559757 MS.gene98720:intron 35.0%
!! GTCAGTCTCACTTTTAAATC+TGG + chr2.1:5560039-5560058 None:intergenic 35.0%
!!! TTGAGATTTTTTTTAGGGGG+TGG + chr2.1:5560562-5560581 None:intergenic 35.0%
AAATCTGGCCAAGTTTGATC+AGG + chr2.1:5560024-5560043 None:intergenic 40.0%
AACCATCTGAATCAAATCCC+TGG + chr2.1:5559446-5559465 None:intergenic 40.0%
AAGGTTGTCAAGCCATGATA+AGG - chr2.1:5559826-5559845 MS.gene98720:intron 40.0%
AATCGGTTACATGCAGATGT+TGG - chr2.1:5560626-5560645 MS.gene98720:CDS 40.0%
AATTCTACAATGGCCATGGT+AGG - chr2.1:5559646-5559665 MS.gene98720:intron 40.0%
AGAGAATTCTACAATGGCCA+TGG - chr2.1:5559642-5559661 MS.gene98720:intron 40.0%
AGATTGACAACAGTATCAGC+AGG - chr2.1:5560094-5560113 MS.gene98720:intron 40.0%
ATAGGCCCTCATTCTATCTT+AGG + chr2.1:5560475-5560494 None:intergenic 40.0%
ATCAGTGAGGGACTTAGAAA+AGG + chr2.1:5560342-5560361 None:intergenic 40.0%
CCGAAATATCAGAGAGATTG+AGG - chr2.1:5560921-5560940 MS.gene98720:CDS 40.0%
GGAGGATAGGATTTACAGTA+CGG - chr2.1:5559667-5559686 MS.gene98720:intron 40.0%
GGTTGTCACCAAATTTGTGA+AGG - chr2.1:5559875-5559894 MS.gene98720:intron 40.0%
GTCAATCTAATATCAGCAGC+AGG + chr2.1:5560082-5560101 None:intergenic 40.0%
TAAATCCTATCCTCCTACCA+TGG + chr2.1:5559662-5559681 None:intergenic 40.0%
TCAGTGAGGGACTTAGAAAA+GGG + chr2.1:5560341-5560360 None:intergenic 40.0%
TGATGCAAATGGAAGGGAAA+GGG + chr2.1:5560375-5560394 None:intergenic 40.0%
TGCATGTAACCGATTGAGAT+GGG + chr2.1:5560621-5560640 None:intergenic 40.0%
TTGAACTGCATGCCTATGAA+TGG + chr2.1:5559606-5559625 None:intergenic 40.0%
TTGTCAAGCCATGATAAGGT+TGG - chr2.1:5559830-5559849 MS.gene98720:intron 40.0%
! AGGTTTGGAACCCATAGATA+AGG + chr2.1:5560187-5560206 None:intergenic 40.0%
! GGATTTTGTTGGATCAGTGA+GGG + chr2.1:5560354-5560373 None:intergenic 40.0%
! TTCGAGTTCATCATGTAGAG+CGG + chr2.1:5560225-5560244 None:intergenic 40.0%
!! CATGATAAGGTTGGCTTTAC+GGG - chr2.1:5559839-5559858 MS.gene98720:intron 40.0%
!! CCATGATAAGGTTGGCTTTA+CGG - chr2.1:5559838-5559857 MS.gene98720:intron 40.0%
!! GCTTGTTATTTACTCGCGAA+CGG + chr2.1:5559707-5559726 None:intergenic 40.0%
!! GTCTTGTTGATTTGTGTCAC+AGG - chr2.1:5560738-5560757 MS.gene98720:CDS 40.0%
!!! AGATTTTTTTTAGGGGGTGG+AGG + chr2.1:5560559-5560578 None:intergenic 40.0%
AACGACGTGATGCAAATGGA+AGG + chr2.1:5560382-5560401 None:intergenic 45.0%
AATATCAGCAGCAGGAGAAG+AGG + chr2.1:5560074-5560093 None:intergenic 45.0%
AATCAAATCCCTGGCCAGAT+TGG + chr2.1:5559437-5559456 None:intergenic 45.0%
AATGTGTCCGAATCTGCTAC+AGG + chr2.1:5559579-5559598 None:intergenic 45.0%
ACGACGTGATGCAAATGGAA+GGG + chr2.1:5560381-5560400 None:intergenic 45.0%
AGCGGGAAAAATGTGAGTGA+AGG + chr2.1:5560207-5560226 None:intergenic 45.0%
AGGCATGCAGTTCAACTCAA+GGG - chr2.1:5559611-5559630 MS.gene98720:CDS 45.0%
ATGGCAGCATGAGACACATT+GGG + chr2.1:5560426-5560445 None:intergenic 45.0%
CCGTAAAGCCAACCTTATCA+TGG + chr2.1:5559841-5559860 None:intergenic 45.0%
CGAACAACCTGTAGCAGATT+CGG - chr2.1:5559569-5559588 MS.gene98720:CDS 45.0%
CTGCATGTAACCGATTGAGA+TGG + chr2.1:5560622-5560641 None:intergenic 45.0%
GTGATGCAAATGGAAGGGAA+AGG + chr2.1:5560376-5560395 None:intergenic 45.0%
TAGGCATGCAGTTCAACTCA+AGG - chr2.1:5559610-5559629 MS.gene98720:CDS 45.0%
TCATGGCTTGACAACCTTCT+CGG + chr2.1:5559824-5559843 None:intergenic 45.0%
TCCATTTGCATCACGTCGTT+AGG - chr2.1:5560382-5560401 MS.gene98720:intron 45.0%
TCCTAACGACGTGATGCAAA+TGG + chr2.1:5560386-5560405 None:intergenic 45.0%
TCGAGTTCATCATGTAGAGC+GGG + chr2.1:5560224-5560243 None:intergenic 45.0%
TGTCACAGGACGAGAAAGAT+AGG - chr2.1:5560752-5560771 MS.gene98720:CDS 45.0%
TTTACGGGATGAAGGGAAGT+GGG - chr2.1:5559854-5559873 MS.gene98720:intron 45.0%
! AAAAGGGTGTGTGGAAAGTG+AGG + chr2.1:5560325-5560344 None:intergenic 45.0%
! AGGACTAGAGGTAGCTTTTC+AGG + chr2.1:5560539-5560558 None:intergenic 45.0%
! GGAAGGGAAAGGGATTTTGT+TGG + chr2.1:5560365-5560384 None:intergenic 45.0%
! GGGATTTTGTTGGATCAGTG+AGG + chr2.1:5560355-5560374 None:intergenic 45.0%
! TGTTATTTACTCGCGAACGG+CGG + chr2.1:5559704-5559723 None:intergenic 45.0%
AATGGCCATGGTAGGAGGAT+AGG - chr2.1:5559654-5559673 MS.gene98720:intron 50.0%
ATGGATCACCAATCTGGCCA+GGG - chr2.1:5559426-5559445 MS.gene98720:CDS 50.0%
CATGCAGTTCAACTCAAGGG+AGG - chr2.1:5559614-5559633 MS.gene98720:CDS 50.0%
CATGGCAGCATGAGACACAT+TGG + chr2.1:5560427-5560446 None:intergenic 50.0%
CATGGCTTGACAACCTTCTC+GGG + chr2.1:5559823-5559842 None:intergenic 50.0%
CTCACTAACCAAGTGCTTCC+CGG + chr2.1:5559949-5559968 None:intergenic 50.0%
CTTTACGGGATGAAGGGAAG+TGG - chr2.1:5559853-5559872 MS.gene98720:intron 50.0%
GGCCAGGGATTTGATTCAGA+TGG - chr2.1:5559441-5559460 MS.gene98720:CDS 50.0%
GGCCCTCATTCTATCTTAGG+TGG + chr2.1:5560472-5560491 None:intergenic 50.0%
TCTACAATGGCCATGGTAGG+AGG - chr2.1:5559649-5559668 MS.gene98720:intron 50.0%
TGAGTCCCAGTGAAGTTCCA+TGG - chr2.1:5559916-5559935 MS.gene98720:intron 50.0%
! GGGACTTAGAAAAGGGTGTG+TGG + chr2.1:5560334-5560353 None:intergenic 50.0%
!! AGGTTGGCTTTACGGGATGA+AGG - chr2.1:5559846-5559865 MS.gene98720:intron 50.0%
!! GGTTGGCTTTACGGGATGAA+GGG - chr2.1:5559847-5559866 MS.gene98720:intron 50.0%
AAGTTCCATGGCGAGGATCC+GGG - chr2.1:5559928-5559947 MS.gene98720:intron 55.0%
CCTCGCCATGGAACTTCACT+GGG + chr2.1:5559924-5559943 None:intergenic 55.0%
GAAGTTCCATGGCGAGGATC+CGG - chr2.1:5559927-5559946 MS.gene98720:intron 55.0%
GATGGATCACCAATCTGGCC+AGG - chr2.1:5559425-5559444 MS.gene98720:CDS 55.0%
GCAACTCGAGCGATAGCTCA+CGG + chr2.1:5560783-5560802 None:intergenic 55.0%
TCCTCGCCATGGAACTTCAC+TGG + chr2.1:5559925-5559944 None:intergenic 55.0%
TTACTCGCGAACGGCGGTTA+TGG + chr2.1:5559698-5559717 None:intergenic 55.0%
TTTAGGGGGTGGAGGACTAG+AGG + chr2.1:5560551-5560570 None:intergenic 55.0%
! CGCTCGAGTTGCACAACGAA+AGG - chr2.1:5560791-5560810 MS.gene98720:CDS 55.0%
!! CGGGAAGCACTTGGTTAGTG+AGG - chr2.1:5559947-5559966 MS.gene98720:intron 55.0%
CCCAGTGAAGTTCCATGGCG+AGG - chr2.1:5559921-5559940 MS.gene98720:intron 60.0%
GGCTTGACAACCTTCTCGGG+TGG + chr2.1:5559820-5559839 None:intergenic 60.0%
GGGTGTGTGGAAAGTGAGGC+TGG + chr2.1:5560321-5560340 None:intergenic 60.0%
TGACAACCTTCTCGGGTGGC+TGG + chr2.1:5559816-5559835 None:intergenic 60.0%
CAACCTTCTCGGGTGGCTGG+TGG + chr2.1:5559813-5559832 None:intergenic 65.0%
TGCTTCCCGGATCCTCGCCA+TGG + chr2.1:5559936-5559955 None:intergenic 65.0%
!! GCGAGGATCCGGGAAGCACT+TGG - chr2.1:5559938-5559957 MS.gene98720:intron 65.0%
CCTCCACCAGCCACCCGAGA+AGG - chr2.1:5559807-5559826 MS.gene98720:intron 70.0%
CCTTCTCGGGTGGCTGGTGG+AGG + chr2.1:5559810-5559829 None:intergenic 70.0%
CTCGGGTGGCTGGTGGAGGA+GGG + chr2.1:5559806-5559825 None:intergenic 70.0%
TCTCGGGTGGCTGGTGGAGG+AGG + chr2.1:5559807-5559826 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 5559423 5560972 5559423 ID=MS.gene98720
chr2.1 mRNA 5559423 5560972 5559423 ID=MS.gene98720.t1;Parent=MS.gene98720
chr2.1 exon 5560427 5560972 5560427 ID=MS.gene98720.t1.exon1;Parent=MS.gene98720.t1
chr2.1 CDS 5560427 5560972 5560427 ID=cds.MS.gene98720.t1;Parent=MS.gene98720.t1
chr2.1 exon 5559423 5559635 5559423 ID=MS.gene98720.t1.exon2;Parent=MS.gene98720.t1
chr2.1 CDS 5559423 5559635 5559423 ID=cds.MS.gene98720.t1;Parent=MS.gene98720.t1
Gene Sequence

>MS.gene98720

ATGATGGATCACCAATCTGGCCAGGGATTTGATTCAGATGGTTGTGACTTTGATGTGCTAGCAGAAATCAGTGAGAAACATGAGAAAGTAGAAGATGAGTTTACAAACAATTTAGAATTATGTACAGGCGAAGATGAAAAGTTTGTCGAACAACCTGTAGCAGATTCGGACACATTAGAACCATTCATAGGCATGCAGTTCAACTCAAGGGAGGAAGCAAGAGAATTCTACAATGGCCATGGTAGGAGGATAGGATTTACAGTACGGATACACCATAACCGCCGTTCGCGAGTAAATAACAAGCTAATTGGTCAAGATTTTGTCTGCTCAAAAGAAGGTTTTCGTGCAAAAAAGTATGTGCACAGAAAAGATAGAGTGCTCCCTCCTCCACCAGCCACCCGAGAAGGTTGTCAAGCCATGATAAGGTTGGCTTTACGGGATGAAGGGAAGTGGGTTGTCACCAAATTTGTGAAGGAACATACACATAAACTGATGAGTCCCAGTGAAGTTCCATGGCGAGGATCCGGGAAGCACTTGGTTAGTGAGGTACGTTTCTCCAATAGTGCACTTTATAGTTTAAACTAACAGTTTATGTATACCTGATCAAACTTGGCCAGATTTAAAAGTGAGACTGACTAATGCATTATACCTCTTCTCCTGCTGCTGATATTAGATTGACAACAGTATCAGCAGGATTAAACTACACTGAACATGATGAACTCGAATAGCAAAATACAGATTCTCATGGAGCTTCTAGAATACCTTATCTATGGGTTCCAAACCTTCACTCACATTTTTCCCGCTCTACATGATGAACTCGAATATCAAAATACAGATTCTTATGGAGCTTTTAGAATATCTTATCTCTGGGTTCCAAACTTTCACTCACAATTTTCCAGCCTCACTTTCCACACACCCTTTTCTAAGTCCCTCACTGATCCAACAAAATCCCTTTCCCTTCCATTTGCATCACGTCGTTAGGAAGTTAGTTATCTGAAGTCCCAATGTGTCTCATGCTGCCATGTCTTAAATTCTCTTGCTATTTTCCACCTAAGATAGAATGAGGGCCTATCGATATTACACCAAGAATATACATAATATAGTCAATTATAGCCTGAAAAGCTACCTCTAGTCCTCCACCCCCTAAAAAAAATCTCAAACAGGATTGTATTAACTCTTTTAGGGCATTAAAAGTCCCATCTCAATCGGTTACATGCAGATGTTGGATTAGGATATTTTGATTTGTGTATAGTTCAGTTCTTTGTTAGGATTGAATGTCCATGTTCTGTTTGTTCCTTTTTTCTACCTCAAACTTGTCTTGTTGATTTGTGTCACAGGACGAGAAAGATAGGAGAATCCGTGAGCTATCGCTCGAGTTGCACAACGAAAGGCAAAAGTACAAAAGGCGTTGTGCAGCATATGAAGAACAGTTAAATACAATTCTGAACGATTTGGAAAAGCACACAGAACATATCTCTAAAAAAGTTGCTGATGTAGTCCGAAATATCAGAGAGATTGAGGAAGAAAAATCAGATTTAGATGGCAGGTAA
Protein sequence

>MS.gene98720.t1

MMDHQSGQGFDSDGCDFDVLAEISEKHEKVEDEFTNNLELCTGEDEKFVEQPVADSDTLEPFIGMQFNSREEAREFYNGHGRRIGFTVRIHHNRRSRVNNKLIGQDFVCSKEGFRAKKYVHRKDRVLPPPPATREGCQAMIRLALRDEGKWVVTKFVKEHTHKLMSPSEVPWRGSGKHLVSEDEKDRRIRELSLELHNERQKYKRRCAAYEEQLNTILNDLEKHTEHISKKVADVVRNIREIEEEKSDLDGR