AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98872

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98872.t1 MTR_5g083960 97.449 196 5 0 1 196 1 196 1.89e-144 400
MS.gene98872.t1 MTR_3g094690 63.025 238 43 8 1 195 1 236 7.79e-84 248
MS.gene98872.t1 MTR_3g094690 62.605 238 43 9 1 195 1 235 2.82e-81 241
MS.gene98872.t1 MTR_5g075020 59.052 232 55 7 1 195 1 229 2.49e-71 216
MS.gene98872.t1 MTR_5g075020 58.929 224 53 6 9 195 12 233 6.26e-69 210
MS.gene98872.t1 MTR_5g083230 60.504 119 47 0 34 152 1 119 7.79e-49 157
MS.gene98872.t1 MTR_2g068760 63.063 111 41 0 36 146 10 120 6.54e-48 154
MS.gene98872.t1 MTR_3g071590 67.619 105 34 0 35 139 4 108 7.45e-48 154
MS.gene98872.t1 MTR_4g083680 62.727 110 41 0 29 138 5 114 2.14e-47 153
MS.gene98872.t1 MTR_4g105170 62.385 109 41 0 38 146 10 118 1.19e-44 147
MS.gene98872.t1 MTR_7g033800 62.617 107 40 0 36 142 8 114 1.99e-44 145
MS.gene98872.t1 MTR_2g093310 55.752 113 50 0 38 150 32 144 9.25e-44 145
MS.gene98872.t1 MTR_3g031660 55.645 124 50 1 37 155 5 128 1.46e-43 144
MS.gene98872.t1 MTR_3g077240 59.091 110 45 0 37 146 8 117 8.36e-43 142
MS.gene98872.t1 MTR_6g005070 60.577 104 41 0 36 139 6 109 1.15e-42 140
MS.gene98872.t1 MTR_3g073690 59.813 107 43 0 36 142 6 112 1.72e-42 142
MS.gene98872.t1 MTR_5g017950 60.748 107 42 0 36 142 5 111 3.12e-42 144
MS.gene98872.t1 MTR_4g060950 55.263 114 50 1 38 150 23 136 6.26e-42 140
MS.gene98872.t1 MTR_6g005080 57.009 107 46 0 36 142 7 113 3.52e-41 136
MS.gene98872.t1 MTR_3g071420 59.804 102 41 0 36 137 11 112 1.96e-40 136
MS.gene98872.t1 MTR_3g452660 55.963 109 48 0 36 144 4 112 7.97e-40 137
MS.gene98872.t1 MTR_1g095850 54.955 111 50 0 40 150 73 183 8.72e-40 135
MS.gene98872.t1 MTR_7g074990 62.745 102 37 1 39 139 20 121 1.31e-39 135
MS.gene98872.t1 MTR_8g040900 43.590 156 88 0 36 191 4 159 1.07e-38 132
MS.gene98872.t1 MTR_5g083010 55.660 106 47 0 36 141 8 113 1.15e-38 131
MS.gene98872.t1 MTR_7g096530 53.333 105 48 1 36 139 11 115 2.09e-36 126
MS.gene98872.t1 MTR_7g028905 53.333 105 49 0 40 144 6 110 5.91e-36 122
MS.gene98872.t1 MTR_8g036085 47.794 136 65 3 39 168 23 158 5.83e-35 123
MS.gene98872.t1 MTR_5g093010 46.457 127 65 1 40 166 6 129 2.99e-34 119
MS.gene98872.t1 MTR_8g036105 50.435 115 56 1 39 152 18 132 4.54e-34 120
MS.gene98872.t1 MTR_1g070220 53.465 101 46 1 39 138 15 115 5.83e-34 120
MS.gene98872.t1 MTR_6g027710 49.107 112 56 1 38 148 39 150 2.27e-33 119
MS.gene98872.t1 MTR_7g096610 53.398 103 45 2 38 138 7 108 2.80e-32 116
MS.gene98872.t1 MTR_1g070205 53.922 102 44 2 39 138 12 112 4.42e-32 116
MS.gene98872.t1 MTR_5g080470 50.505 99 48 1 38 135 6 104 3.83e-30 109
MS.gene98872.t1 MTR_8g079660 47.115 104 55 0 39 142 8 111 1.62e-29 110
MS.gene98872.t1 MTR_7g075230 42.405 158 79 5 39 191 12 162 1.78e-28 105
MS.gene98872.t1 MTR_6g027700 42.718 103 58 1 37 138 5 107 3.27e-27 102
MS.gene98872.t1 MTR_8g079620 43.269 104 59 0 39 142 8 111 4.83e-26 100
MS.gene98872.t1 MTR_6g011250 39.806 103 61 1 32 133 2 104 3.72e-25 96.7
MS.gene98872.t1 MTR_8g079580 46.667 105 55 1 39 142 8 112 3.72e-25 97.8
MS.gene98872.t1 MTR_4g107450 37.705 122 76 0 36 157 7 128 2.36e-24 97.4
MS.gene98872.t1 MTR_6g011230 38.235 102 63 0 35 136 7 108 1.39e-23 93.2
MS.gene98872.t1 MTR_6g011200 37.755 98 60 1 40 136 10 107 8.92e-22 89.7
MS.gene98872.t1 MTR_2g100020 39.048 105 62 2 36 139 16 119 8.43e-21 87.4
MS.gene98872.t1 MTR_8g017090 35.780 109 68 2 36 143 9 116 3.95e-20 86.3
MS.gene98872.t1 MTR_5g085390 34.579 107 66 2 34 136 1 107 1.71e-19 83.2
MS.gene98872.t1 MTR_4g099230 35.714 98 62 1 40 136 3 100 3.10e-19 80.5
MS.gene98872.t1 MTR_4g088035 32.955 88 59 0 38 125 5 92 7.16e-14 68.6
MS.gene98872.t1 MTR_8g009730 27.891 147 99 2 40 185 11 151 2.53e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98872.t1 AT2G40470 73.054 167 34 4 1 157 1 166 1.66e-71 216
MS.gene98872.t1 AT2G40470 79.851 134 24 1 27 157 8 141 4.33e-67 204
MS.gene98872.t1 AT2G30340 62.424 165 49 2 1 152 1 165 4.43e-67 206
MS.gene98872.t1 AT2G30340 74.797 123 31 0 30 152 44 166 4.13e-65 201
MS.gene98872.t1 AT2G30130 66.990 103 34 0 37 139 6 108 7.07e-46 150
MS.gene98872.t1 AT1G31320 60.345 116 46 0 36 151 10 125 8.35e-46 149
MS.gene98872.t1 AT5G63090 53.285 137 61 1 37 170 9 145 2.21e-43 143
MS.gene98872.t1 AT5G63090 53.285 137 61 1 37 170 9 145 2.21e-43 143
MS.gene98872.t1 AT5G63090 53.285 137 61 1 37 170 9 145 2.21e-43 143
MS.gene98872.t1 AT5G63090 53.285 137 61 1 37 170 9 145 2.21e-43 143
MS.gene98872.t1 AT3G27650 60.748 107 42 0 36 142 36 142 2.86e-43 142
MS.gene98872.t1 AT5G66870 55.072 138 57 3 36 173 4 136 9.26e-43 145
MS.gene98872.t1 AT1G07900 54.867 113 51 0 38 150 32 144 4.79e-42 140
MS.gene98872.t1 AT1G16530 50.704 142 63 3 23 162 3 139 7.75e-42 139
MS.gene98872.t1 AT2G28500 54.867 113 51 0 38 150 54 166 1.75e-41 140
MS.gene98872.t1 AT2G23660 57.944 107 45 0 36 142 2 108 6.74e-41 140
MS.gene98872.t1 AT2G23660 57.944 107 45 0 36 142 2 108 6.74e-41 140
MS.gene98872.t1 AT2G23660 57.944 107 45 0 36 142 2 108 6.74e-41 140
MS.gene98872.t1 AT1G65620 61.468 109 42 0 35 143 5 113 1.53e-40 137
MS.gene98872.t1 AT1G65620 61.468 109 42 0 35 143 5 113 1.53e-40 137
MS.gene98872.t1 AT1G65620 61.468 109 42 0 35 143 5 113 1.53e-40 137
MS.gene98872.t1 AT1G65620 61.468 109 42 0 35 143 5 113 1.53e-40 137
MS.gene98872.t1 AT1G65620 61.468 109 42 0 35 143 5 113 1.53e-40 137
MS.gene98872.t1 AT3G11090 52.500 120 57 0 36 155 8 127 4.61e-38 129
MS.gene98872.t1 AT3G26620 55.000 100 45 0 40 139 6 105 4.32e-37 125
MS.gene98872.t1 AT3G26660 55.000 100 45 0 40 139 6 105 5.03e-37 125
MS.gene98872.t1 AT2G42430 47.656 128 66 1 29 155 5 132 6.71e-36 126
MS.gene98872.t1 AT3G03760 51.786 112 53 1 38 148 50 161 5.81e-35 124
MS.gene98872.t1 AT4G00210 53.922 102 46 1 39 139 11 112 1.02e-33 120
MS.gene98872.t1 AT2G31310 51.961 102 48 1 38 138 6 107 9.04e-33 116
MS.gene98872.t1 AT4G00220 55.769 104 45 1 42 144 20 123 1.37e-32 117
MS.gene98872.t1 AT3G58190 52.941 102 45 2 39 138 11 111 1.83e-32 116
MS.gene98872.t1 AT5G06080 49.107 112 56 1 38 148 6 117 5.26e-32 114
MS.gene98872.t1 AT2G45420 50.962 104 50 1 42 144 40 143 8.03e-31 113
MS.gene98872.t1 AT2G42440 50.485 103 48 2 38 138 6 107 1.69e-30 112
MS.gene98872.t1 AT2G45410 51.515 99 47 1 42 139 19 117 1.25e-29 108
MS.gene98872.t1 AT3G50510 41.026 117 69 0 37 153 10 126 1.41e-26 100
MS.gene98872.t1 AT3G50510 41.026 117 69 0 37 153 10 126 1.41e-26 100
MS.gene98872.t1 AT3G47870 38.889 108 66 0 36 143 33 140 1.17e-25 101
MS.gene98872.t1 AT1G72980 40.385 104 62 0 36 139 10 113 1.46e-22 90.9
MS.gene98872.t1 AT5G35900 37.500 104 65 0 36 139 2 105 5.17e-22 89.4
MS.gene98872.t1 AT3G13850 33.654 104 69 0 40 143 37 140 8.05e-20 84.7
MS.gene98872.t1 AT1G06280 46.753 77 41 0 40 116 25 101 1.38e-18 80.1
MS.gene98872.t1 AT4G22700 39.216 102 51 4 40 132 6 105 1.27e-15 72.0
MS.gene98872.t1 AT2G19820 33.333 90 59 1 38 126 11 100 4.33e-15 68.9
MS.gene98872.t1 AT5G15060 38.202 89 49 3 27 110 3 90 8.43e-12 60.8
MS.gene98872.t1 AT1G36000 30.108 93 63 2 34 125 4 95 2.04e-11 59.3

Find 34 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAGAAATATGGAGAAAA+AGG 0.233084 5.2:+71827229 None:intergenic
CTTGCAAATTTAATCAAAAT+AGG 0.235336 5.2:+71826176 None:intergenic
GCTTCTGTCCACAAAGTCTT+TGG 0.267396 5.2:-71827187 MS.gene98872:CDS
TTTCAAAAGGGAAGAATGTT+AGG 0.277293 5.2:-71827328 MS.gene98872:CDS
AGGCTAAGAGATCCAGTTTA+TGG 0.306813 5.2:-71826438 MS.gene98872:CDS
GCATCTGCTCTTTGATTCTC+TGG 0.341032 5.2:+71826492 None:intergenic
GGAAGAATGTTAGGTCCTTC+AGG 0.355019 5.2:-71827319 MS.gene98872:CDS
GGCTCATGAGGAGAGAAATA+TGG 0.368976 5.2:+71827220 None:intergenic
GCACCCATGCATCCATAAAC+TGG 0.381798 5.2:+71826426 None:intergenic
ACTTGAAATTGAGCTATAAC+TGG 0.426496 5.2:+71826209 None:intergenic
CAACAAGTTCAATCATTACT+AGG 0.447623 5.2:-71826387 MS.gene98872:CDS
TGCTGGCACCAAAGACTTTG+TGG 0.448216 5.2:+71827179 None:intergenic
TAGCAACTTTGAGACGTTGC+TGG 0.449895 5.2:+71827162 None:intergenic
CAACGTCTCAAAGTTGCTAT+TGG 0.452802 5.2:-71827158 MS.gene98872:intron
TAGTTTATGAAGCAAATGTA+AGG 0.466219 5.2:-71826458 MS.gene98872:CDS
TAAATAGAAGAAGGAAGCCT+TGG 0.522625 5.2:+71826252 None:intergenic
GAGATAGGAAAGAAGAGAGA+GGG 0.526552 5.2:-71827361 MS.gene98872:CDS
AGATCCAGTTTATGGATGCA+TGG 0.526865 5.2:-71826430 MS.gene98872:CDS
ATTGATACATCATCTGAAGA+AGG 0.534416 5.2:+71826303 None:intergenic
TTTGAGACGAAGGTGTGCCC+AGG 0.536248 5.2:-71827257 MS.gene98872:CDS
GCAAACTTCTGAGGCTCATG+AGG 0.547685 5.2:+71827208 None:intergenic
ATGCTTGAATGTCCAGAGAA+AGG 0.549398 5.2:-71827574 None:intergenic
TGAGATAGGAAAGAAGAGAG+AGG 0.549797 5.2:-71827362 MS.gene98872:CDS
AATTCATAAATACAAACTCA+TGG 0.552933 5.2:-71826340 MS.gene98872:CDS
GAAATTGAGCTATAACTGGT+AGG 0.562061 5.2:+71826213 None:intergenic
TGTTGTGTGTAAATAGAAGA+AGG 0.566644 5.2:+71826243 None:intergenic
GATCCAGTTTATGGATGCAT+GGG 0.578062 5.2:-71826429 MS.gene98872:CDS
TGGACAGAAGCAAACTTCTG+AGG 0.589514 5.2:+71827199 None:intergenic
AAAAGCTTGCATGCAGCACA+AGG 0.594669 5.2:+71827277 None:intergenic
GCATGCAGCACAAGGAGTAG+TGG 0.596320 5.2:+71827285 None:intergenic
GTGGTATTTAGTGTTCCTGA+AGG 0.618012 5.2:+71827304 None:intergenic
CACCTTCAACATCACTACCA+AGG 0.661627 5.2:-71826269 MS.gene98872:CDS
AGCCTTGGTAGTGATGTTGA+AGG 0.670441 5.2:+71826267 None:intergenic
CTTGGTAGTGATGTTGAAGG+TGG 0.715413 5.2:+71826270 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAAAAAAAAATTGAG+AGG + chr5.2:71827019-71827038 None:intergenic 10.0%
!! TTAAAAAATATTCTAATTAG+TGG - chr5.2:71826945-71826964 MS.gene98872:intron 10.0%
!!! AAATTGATAACAAAAAATTT+AGG - chr5.2:71826744-71826763 MS.gene98872:intron 10.0%
!!! AATTGATAACAAAAAATTTA+GGG - chr5.2:71826745-71826764 MS.gene98872:intron 10.0%
!!! ATAAATAATTTGTTATTTAG+AGG + chr5.2:71827124-71827143 None:intergenic 10.0%
!!! TAAATAATTTGTTATTTAGA+GGG + chr5.2:71827123-71827142 None:intergenic 10.0%
!!! TATTTCTACTAATTAATATA+TGG - chr5.2:71826253-71826272 MS.gene98872:CDS 10.0%
!! ATATGCTTTAATATCTATAT+AGG - chr5.2:71826352-71826371 MS.gene98872:CDS 15.0%
!! ATATTTGTAATAATGAACTA+AGG + chr5.2:71826634-71826653 None:intergenic 15.0%
!! TATGCTTTAATATCTATATA+GGG - chr5.2:71826353-71826372 MS.gene98872:CDS 15.0%
!!! AAAATTACAAATTTTGTCAT+AGG + chr5.2:71826231-71826250 None:intergenic 15.0%
!!! AAATAATTTGTTATTTAGAG+GGG + chr5.2:71827122-71827141 None:intergenic 15.0%
!!! AAATTACAAATTTTGTCATA+GGG + chr5.2:71826230-71826249 None:intergenic 15.0%
!!! TTAGACAACATTTTTTTAAT+CGG + chr5.2:71826831-71826850 None:intergenic 15.0%
!! AATTCATAAATACAAACTCA+TGG - chr5.2:71827411-71827430 MS.gene98872:intron 20.0%
!! ATGCTTTAATATCTATATAG+GGG - chr5.2:71826354-71826373 MS.gene98872:CDS 20.0%
!! ATGGATATACATTATATAAG+AGG - chr5.2:71826706-71826725 MS.gene98872:intron 20.0%
!! TATACATTATATAAGAGGTT+TGG - chr5.2:71826711-71826730 MS.gene98872:intron 20.0%
!! TGAAAAAAAAGTAACATTTG+TGG - chr5.2:71827209-71827228 MS.gene98872:CDS 20.0%
!! TTGTAAAAGTCCTAAATTAT+TGG + chr5.2:71826795-71826814 None:intergenic 20.0%
!!! TTGATTTTATTTTAAGTCGA+TGG - chr5.2:71826687-71826706 MS.gene98872:intron 20.0%
! AAAAAGTAACATTTGTGGTA+TGG - chr5.2:71827214-71827233 MS.gene98872:CDS 25.0%
! AAAAGTCCTAAATTATTGGT+TGG + chr5.2:71826791-71826810 None:intergenic 25.0%
! GTATGGTTATGTGTTTAATT+AGG - chr5.2:71827231-71827250 MS.gene98872:CDS 25.0%
! TAGTTTATGAAGCAAATGTA+AGG - chr5.2:71827293-71827312 MS.gene98872:CDS 25.0%
! TGCTTTAATATCTATATAGG+GGG - chr5.2:71826355-71826374 MS.gene98872:CDS 25.0%
!! AAAAGTATGCTTGAAAAGTT+TGG + chr5.2:71826282-71826301 None:intergenic 25.0%
!!! AAATGGATTACTAAACAATG+TGG - chr5.2:71826900-71826919 MS.gene98872:intron 25.0%
!!! AATGGATTACTAAACAATGT+GGG - chr5.2:71826901-71826920 MS.gene98872:intron 25.0%
ACTAAAATTCCCACATACAT+AGG - chr5.2:71826854-71826873 MS.gene98872:intron 30.0%
ACTTGAAATTGAGCTATAAC+TGG + chr5.2:71827545-71827564 None:intergenic 30.0%
ATATACCAAGTTAACCTCAA+AGG + chr5.2:71826972-71826991 None:intergenic 30.0%
ATATAGTCCTGATCTAATTG+TGG + chr5.2:71827087-71827106 None:intergenic 30.0%
ATTCAAGTAGAATGCACATA+AGG + chr5.2:71827158-71827177 None:intergenic 30.0%
ATTGATACATCATCTGAAGA+AGG + chr5.2:71827451-71827470 None:intergenic 30.0%
CAACAAGTTCAATCATTACT+AGG - chr5.2:71827364-71827383 MS.gene98872:CDS 30.0%
CATATATTGATCAGTTCATG+AGG - chr5.2:71827060-71827079 MS.gene98872:intron 30.0%
CTAAAATTCCCACATACATA+GGG - chr5.2:71826855-71826874 MS.gene98872:intron 30.0%
CTCATGAACTGATCAATATA+TGG + chr5.2:71827062-71827081 None:intergenic 30.0%
GATTTGCCAACCAATAATTT+AGG - chr5.2:71826782-71826801 MS.gene98872:intron 30.0%
TCTACTTGAATACAAAGCAA+TGG - chr5.2:71827167-71827186 MS.gene98872:CDS 30.0%
TGGTTATGTGTTTAATTAGG+AGG - chr5.2:71827234-71827253 MS.gene98872:CDS 30.0%
TGTTGTGTGTAAATAGAAGA+AGG + chr5.2:71827511-71827530 None:intergenic 30.0%
TTTCAAAAGGGAAGAATGTT+AGG - chr5.2:71826423-71826442 MS.gene98872:CDS 30.0%
! GGTGATGATTCTTTTCAAAA+GGG - chr5.2:71826411-71826430 MS.gene98872:CDS 30.0%
GAAATTGAGCTATAACTGGT+AGG + chr5.2:71827541-71827560 None:intergenic 35.0%
GGAGAATCATAGTTGCTAAA+TGG - chr5.2:71826883-71826902 MS.gene98872:intron 35.0%
GGAGAGAAATATGGAGAAAA+AGG + chr5.2:71826525-71826544 None:intergenic 35.0%
TAAATAGAAGAAGGAAGCCT+TGG + chr5.2:71827502-71827521 None:intergenic 35.0%
! AGAGTTTTCTTACCTTTCTC+TGG + chr5.2:71826192-71826211 None:intergenic 35.0%
! GGGTGATGATTCTTTTCAAA+AGG - chr5.2:71826410-71826429 MS.gene98872:CDS 35.0%
! TTCTAATTAGTGGACCTTTG+AGG - chr5.2:71826955-71826974 MS.gene98872:intron 35.0%
!!! GGGAGATTTTTTGATGAGAT+AGG - chr5.2:71826375-71826394 MS.gene98872:CDS 35.0%
AGATCCAGTTTATGGATGCA+TGG - chr5.2:71827321-71827340 MS.gene98872:CDS 40.0%
AGGCTAAGAGATCCAGTTTA+TGG - chr5.2:71827313-71827332 MS.gene98872:CDS 40.0%
ATGAGGTCCACAATTAGATC+AGG - chr5.2:71827077-71827096 MS.gene98872:intron 40.0%
ATGGAGAAAAAGGACATTCC+TGG + chr5.2:71826515-71826534 None:intergenic 40.0%
CAACGTCTCAAAGTTGCTAT+TGG - chr5.2:71826593-71826612 MS.gene98872:intron 40.0%
GAGATAGGAAAGAAGAGAGA+GGG - chr5.2:71826390-71826409 MS.gene98872:CDS 40.0%
GATCCAGTTTATGGATGCAT+GGG - chr5.2:71827322-71827341 MS.gene98872:CDS 40.0%
GTGGTATTTAGTGTTCCTGA+AGG + chr5.2:71826450-71826469 None:intergenic 40.0%
TCCTTAGACCCTATGTATGT+GGG + chr5.2:71826866-71826885 None:intergenic 40.0%
TGAGATAGGAAAGAAGAGAG+AGG - chr5.2:71826389-71826408 MS.gene98872:CDS 40.0%
TGGAGAAAAAGGACATTCCT+GGG + chr5.2:71826514-71826533 None:intergenic 40.0%
AAAAGCTTGCATGCAGCACA+AGG + chr5.2:71826477-71826496 None:intergenic 45.0%
CACCTTCAACATCACTACCA+AGG - chr5.2:71827482-71827501 MS.gene98872:intron 45.0%
CTCCTTAGACCCTATGTATG+TGG + chr5.2:71826867-71826886 None:intergenic 45.0%
GCATCTGCTCTTTGATTCTC+TGG + chr5.2:71827262-71827281 None:intergenic 45.0%
GCTTCTGTCCACAAAGTCTT+TGG - chr5.2:71826564-71826583 MS.gene98872:intron 45.0%
GGAAGAATGTTAGGTCCTTC+AGG - chr5.2:71826432-71826451 MS.gene98872:CDS 45.0%
GGCTCATGAGGAGAGAAATA+TGG + chr5.2:71826534-71826553 None:intergenic 45.0%
TCCCACATACATAGGGTCTA+AGG - chr5.2:71826862-71826881 MS.gene98872:intron 45.0%
TGGACAGAAGCAAACTTCTG+AGG + chr5.2:71826555-71826574 None:intergenic 45.0%
!! AGCCTTGGTAGTGATGTTGA+AGG + chr5.2:71827487-71827506 None:intergenic 45.0%
!! CTTGGTAGTGATGTTGAAGG+TGG + chr5.2:71827484-71827503 None:intergenic 45.0%
!! GTGGACCTTTGAGGTTAACT+TGG - chr5.2:71826964-71826983 MS.gene98872:intron 45.0%
!! TAGCAACTTTGAGACGTTGC+TGG + chr5.2:71826592-71826611 None:intergenic 45.0%
!!! CATGCAAGCTTTTGAGACGA+AGG - chr5.2:71826484-71826503 MS.gene98872:CDS 45.0%
!!! TAATTAGAATATTTTTTAAA+AGG + chr5.2:71826944-71826963 None:intergenic 5.0%
GCACCCATGCATCCATAAAC+TGG + chr5.2:71827328-71827347 None:intergenic 50.0%
TGCTGGCACCAAAGACTTTG+TGG + chr5.2:71826575-71826594 None:intergenic 50.0%
!! GCAAACTTCTGAGGCTCATG+AGG + chr5.2:71826546-71826565 None:intergenic 50.0%
GCATGCAGCACAAGGAGTAG+TGG + chr5.2:71826469-71826488 None:intergenic 55.0%
! TTTGAGACGAAGGTGTGCCC+AGG - chr5.2:71826494-71826513 MS.gene98872:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 71826185 71827588 71826185 ID=MS.gene98872
chr5.2 mRNA 71826185 71827588 71826185 ID=MS.gene98872.t1;Parent=MS.gene98872
chr5.2 exon 71827575 71827588 71827575 ID=MS.gene98872.t1.exon1;Parent=MS.gene98872.t1
chr5.2 CDS 71827575 71827588 71827575 ID=cds.MS.gene98872.t1;Parent=MS.gene98872.t1
chr5.2 exon 71827159 71827399 71827159 ID=MS.gene98872.t1.exon2;Parent=MS.gene98872.t1
chr5.2 CDS 71827159 71827399 71827159 ID=cds.MS.gene98872.t1;Parent=MS.gene98872.t1
chr5.2 exon 71826185 71826520 71826185 ID=MS.gene98872.t1.exon3;Parent=MS.gene98872.t1
chr5.2 CDS 71826185 71826520 71826185 ID=cds.MS.gene98872.t1;Parent=MS.gene98872.t1
Gene Sequence

>MS.gene98872

ATGTCCAGAGAAAGGTAAGAAAACTCTTTCAAAGTATATATTCCCTATGACAAAATTTGTAATTTTAGTATTTCTACTAATTAATATATGGTAACCAAACTTTTCAAGCATACTTTTTTTACTCTTAAAAAGAATTTTGCATAAATTTGTTAATTACTAAATTTCATATATGCTTTAATATCTATATAGGGGGAGATTTTTTGATGAGATAGGAAAGAAGAGAGAGGGTGATGATTCTTTTCAAAAGGGAAGAATGTTAGGTCCTTCAGGAACACTAAATACCACTACTCCTTGTGCTGCATGCAAGCTTTTGAGACGAAGGTGTGCCCAGGAATGTCCTTTTTCTCCATATTTCTCTCCTCATGAGCCTCAGAAGTTTGCTTCTGTCCACAAAGTCTTTGGTGCCAGCAACGTCTCAAAGTTGCTATTGGTATACACATATAAAACCTTAGTTCATTATTACAAATATTTTAGTATAATTTAGTGATAACTGATTTAGCTGTTGATTTTATTTTAAGTCGATGGATATACATTATATAAGAGGTTTGGTGACTTTTACAAATTGATAACAAAAAATTTAGGGTTGATTTAGAGATCGATTTGCCAACCAATAATTTAGGACTTTTACAAATTGATCTCTAAACCGATTAAAAAAATGTTGTCTAATGCACTAAAATTCCCACATACATAGGGTCTAAGGAGAATCATAGTTGCTAAATGGATTACTAAACAATGTGGGTTTTTAATTAATATGAACCTTTTAAAAAATATTCTAATTAGTGGACCTTTGAGGTTAACTTGGTATATATCAAGTTAATATTTTTTTTACTTCCTCTCAATTTTTTTTTTATATTTTTTTTTATAAAACTTAATACCATATATTGATCAGTTCATGAGGTCCACAATTAGATCAGGACTATATTAGAGAATAGATCCCCTCTAAATAACAAATTATTTATATATATCTAAACCTTATGTGCATTCTACTTGAATACAAAGCAATGGTGATTAAATTTTATATGAATGAAAAAAAAGTAACATTTGTGGTATGGTTATGTGTTTAATTAGGAGGTACCAGAGAATCAAAGAGCAGATGCAGCAAATAGTTTAGTTTATGAAGCAAATGTAAGGCTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCATCTTTGCAACAACAAGTTCAATCATTACTAGGTGAACTCAATGCTATAAGAGAAGAAATTCATAAATACAAACTCATGGAAGCTAACATGCTTCCTTCTTCAGATGATGTATCAATTGCTACTCTACCACCTTCAACATCACTACCAAGGCTTCCTTCTTCTATTTACACACAACAAACAAATCCTACCAGTTATAGCTCAATTTCAAGTGATCATATTTCCTATTTTGATTAA
Protein sequence

>MS.gene98872.t1

MSRERGRFFDEIGKKREGDDSFQKGRMLGPSGTLNTTTPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLLEVPENQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQVQSLLGELNAIREEIHKYKLMEANMLPSSDDVSIATLPPSTSLPRLPSSIYTQQTNPTSYSSISSDHISYFD