AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98898

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98898.t1 MTR_6g044690 89.894 564 55 2 1 563 1 563 0.0 1019
MS.gene98898.t1 MTR_6g043960 84.032 501 60 1 63 563 1 481 0.0 862
MS.gene98898.t1 MTR_0376s0030 75.575 565 132 4 1 563 1 561 0.0 862
MS.gene98898.t1 MTR_2g054460 77.583 513 63 4 53 563 1 463 0.0 791
MS.gene98898.t1 MTR_1g035420 58.885 574 188 12 5 563 105 645 0.0 644
MS.gene98898.t1 MTR_8g070070 50.484 620 226 11 12 568 160 761 0.0 590
MS.gene98898.t1 MTR_8g070075 48.445 611 245 12 12 568 160 754 0.0 562
MS.gene98898.t1 MTR_8g071030 49.663 594 248 11 12 568 162 741 0.0 560
MS.gene98898.t1 MTR_1g035400 56.046 521 197 9 56 563 63 564 0.0 553
MS.gene98898.t1 MTR_7g088370 39.623 477 250 10 101 563 227 679 1.26e-99 317
MS.gene98898.t1 MTR_8g042750 36.641 524 278 16 61 563 167 657 2.84e-94 303
MS.gene98898.t1 MTR_3g011440 33.672 591 325 16 12 563 71 633 2.47e-90 292
MS.gene98898.t1 MTR_4g010830 35.506 583 307 19 23 567 403 954 2.79e-90 299
MS.gene98898.t1 MTR_5g013420 38.247 502 267 14 86 567 585 1063 2.47e-89 298
MS.gene98898.t1 MTR_5g013420 38.247 502 267 14 86 567 585 1063 2.91e-89 298
MS.gene98898.t1 MTR_6g061270 34.774 486 276 12 110 567 196 668 1.11e-80 267
MS.gene98898.t1 MTR_4g010550 35.934 487 235 16 99 567 11 438 1.69e-80 260
MS.gene98898.t1 MTR_7g084090 34.686 493 288 12 100 567 248 731 3.05e-79 265
MS.gene98898.t1 MTR_6g061200 34.375 480 257 15 110 567 196 639 2.82e-73 247
MS.gene98898.t1 MTR_7g084090 36.870 377 201 11 100 452 248 611 1.28e-63 221
MS.gene98898.t1 MTR_6g044000 84.956 113 17 0 63 175 1 113 8.36e-59 194
MS.gene98898.t1 MTR_6g044000 96.154 52 2 0 512 563 117 168 1.77e-29 114
MS.gene98898.t1 MTR_1g048950 32.829 463 256 12 131 571 88 517 9.23e-53 189
MS.gene98898.t1 MTR_7g445710 30.833 480 242 15 115 573 112 522 4.13e-52 187
MS.gene98898.t1 MTR_7g445530 29.661 472 237 13 115 562 112 512 5.11e-50 181
MS.gene98898.t1 MTR_7g450730 30.464 453 233 14 115 567 109 479 2.74e-46 170
MS.gene98898.t1 MTR_7g052480 28.972 321 196 13 264 567 225 530 8.57e-31 127
MS.gene98898.t1 MTR_7g445600 33.113 151 63 2 412 562 243 355 2.90e-21 95.9
MS.gene98898.t1 MTR_7g445600 34.711 121 73 3 115 234 108 223 4.92e-12 68.2
MS.gene98898.t1 MTR_5g018850 27.778 288 160 9 306 559 1207 1480 1.34e-19 94.0
MS.gene98898.t1 MTR_8g078505 29.545 176 110 3 387 562 354 515 5.51e-19 90.9
MS.gene98898.t1 MTR_1g069570 25.566 309 164 10 310 567 430 723 6.72e-18 87.8
MS.gene98898.t1 MTR_4g132610 27.979 193 108 4 380 562 852 1023 4.49e-17 85.5
MS.gene98898.t1 MTR_8g078490 29.189 185 116 4 380 562 1058 1229 4.84e-17 85.5
MS.gene98898.t1 MTR_1g080340 27.801 241 147 9 334 567 343 563 6.21e-17 84.7
MS.gene98898.t1 MTR_7g098390 28.736 174 109 5 392 563 515 675 1.65e-14 77.0
MS.gene98898.t1 MTR_1g069570 25.954 262 129 9 310 521 430 676 2.60e-14 76.6
MS.gene98898.t1 MTR_5g098680 30.000 180 97 5 124 281 244 416 7.53e-14 75.1
MS.gene98898.t1 MTR_4g131630 59.615 52 18 1 509 560 1 49 4.13e-12 61.6
MS.gene98898.t1 MTR_8g102580 30.573 157 89 4 138 281 261 410 1.19e-11 68.2
MS.gene98898.t1 MTR_7g445810 29.801 151 97 3 115 262 125 269 2.26e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98898.t1 AT4G13460 49.550 555 236 13 35 570 115 644 3.71e-176 513
MS.gene98898.t1 AT4G13460 49.550 555 236 13 35 570 115 644 3.71e-176 513
MS.gene98898.t1 AT2G33290 47.213 574 254 13 11 563 93 638 8.32e-171 499
MS.gene98898.t1 AT2G33290 47.213 574 254 13 11 563 93 638 8.32e-171 499
MS.gene98898.t1 AT2G33290 47.213 574 254 13 11 563 93 638 8.32e-171 499
MS.gene98898.t1 AT2G33290 47.213 574 254 13 11 563 93 638 8.32e-171 499
MS.gene98898.t1 AT2G22740 34.082 534 286 12 61 567 270 764 1.88e-84 280
MS.gene98898.t1 AT2G22740 34.082 534 286 12 61 567 270 764 1.88e-84 280
MS.gene98898.t1 AT2G35160 33.810 559 289 15 26 567 238 732 2.39e-84 278
MS.gene98898.t1 AT5G04940 34.783 529 275 15 61 563 155 639 2.43e-84 276
MS.gene98898.t1 AT5G04940 34.783 529 275 15 61 563 155 639 2.43e-84 276
MS.gene98898.t1 AT2G35160 33.810 559 289 15 26 567 274 768 6.68e-84 278
MS.gene98898.t1 AT2G35160 33.810 559 289 15 26 567 274 768 6.68e-84 278
MS.gene98898.t1 AT2G35160 33.810 559 289 15 26 567 274 768 6.68e-84 278
MS.gene98898.t1 AT2G35160 33.810 559 289 15 26 567 274 768 6.68e-84 278
MS.gene98898.t1 AT1G73100 37.155 471 252 15 115 563 190 638 1.47e-82 271
MS.gene98898.t1 AT5G13960 34.475 467 264 16 130 567 11 464 3.06e-75 248
MS.gene98898.t1 AT5G13960 34.216 491 272 17 110 567 126 598 4.11e-75 251
MS.gene98898.t1 AT1G17770 33.891 478 269 12 112 563 204 660 2.22e-72 245
MS.gene98898.t1 AT2G24740 36.575 473 247 17 110 563 285 723 6.36e-72 245
MS.gene98898.t1 AT5G47150 41.111 180 89 5 110 280 153 324 4.73e-31 124
MS.gene98898.t1 AT2G23740 33.333 195 101 5 380 565 1184 1358 5.20e-23 104
MS.gene98898.t1 AT2G23740 33.333 195 101 5 380 565 1184 1358 5.20e-23 104
MS.gene98898.t1 AT2G23740 33.333 195 101 5 380 565 1184 1358 5.20e-23 104
MS.gene98898.t1 AT2G23740 33.333 195 101 5 380 565 1177 1351 5.67e-23 104
MS.gene98898.t1 AT5G47160 37.017 181 96 6 107 277 236 408 5.52e-22 99.0
MS.gene98898.t1 AT5G47160 37.017 181 96 6 107 277 236 408 5.52e-22 99.0
MS.gene98898.t1 AT5G47160 37.017 181 96 6 107 277 236 408 5.52e-22 99.0
MS.gene98898.t1 AT3G03750 28.000 275 158 8 310 563 68 323 2.39e-19 90.5
MS.gene98898.t1 AT2G23740 35.099 151 69 5 380 521 1184 1314 4.18e-17 85.9
MS.gene98898.t1 AT2G23740 35.099 151 69 5 380 521 1184 1314 4.18e-17 85.9
MS.gene98898.t1 AT2G05900 34.343 198 113 10 151 338 1 191 1.61e-16 81.3
MS.gene98898.t1 AT1G57820 29.282 181 98 6 124 281 254 427 3.86e-13 72.8
MS.gene98898.t1 AT1G57820 29.282 181 98 6 124 281 254 427 3.86e-13 72.8
MS.gene98898.t1 AT1G57820 29.213 178 99 6 124 281 254 424 8.13e-13 71.6

Find 124 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTATGATCATGGTAAT+TGG 0.190966 6.2:-38850390 MS.gene98898:CDS
ATAAAAGTTCCAGCTAAAAT+AGG 0.203094 6.2:+38850673 None:intergenic
CTCTGAGGAAGCAAGAATTT+TGG 0.214710 6.2:+38850955 None:intergenic
ATTGAATGTTGGTTTGAAAA+AGG 0.222300 6.2:-38851219 MS.gene98898:CDS
GGTTGCCTCGTTCCAACTTC+TGG 0.277816 6.2:+38851361 None:intergenic
TGGAACGATGGCGCGTGATA+TGG 0.288786 6.2:+38851959 None:intergenic
TTTATAAGTTTATGTTATCT+AGG 0.300253 6.2:-38851179 MS.gene98898:CDS
TATTCGTGTGTCAGGTTTGC+TGG 0.316438 6.2:-38851766 MS.gene98898:CDS
GACTTATTCAAAAGTCGATT+TGG 0.316958 6.2:+38850565 None:intergenic
AGGATCATACTACCCATCTT+AGG 0.317543 6.2:+38851144 None:intergenic
ACATAGGATTAGAACATAAT+TGG 0.321952 6.2:+38851094 None:intergenic
AGAAACCGTGTGACACAAAA+AGG 0.338747 6.2:-38850760 MS.gene98898:CDS
CCAGTTCCTGGTGTTTGTAT+TGG 0.341157 6.2:-38851582 MS.gene98898:CDS
TGTTATTCACTTCTTCTGTC+TGG 0.365058 6.2:+38851688 None:intergenic
TAAGCATACTTGCTTCCTTA+AGG 0.369544 6.2:+38851124 None:intergenic
ATGAGACTAGTTGGGGAGTT+AGG 0.370168 6.2:-38850705 MS.gene98898:CDS
TATCTTGATAAGAAAATCAT+TGG 0.372117 6.2:-38851606 MS.gene98898:CDS
AAAATCATTGGTCCAGTTCC+TGG 0.372423 6.2:-38851594 MS.gene98898:CDS
ACTAATTGAACAAACACATT+TGG 0.377806 6.2:+38850412 None:intergenic
AAATCTATGCAGAAGCTTAG+AGG 0.379307 6.2:-38851879 MS.gene98898:CDS
TGCAATATGAGATTGATGTT+AGG 0.379723 6.2:-38851320 MS.gene98898:CDS
CATGCTAGTATGAGTTCTAA+TGG 0.384429 6.2:-38851483 MS.gene98898:CDS
TGCGAAGGACAACTACAAAA+AGG 0.399229 6.2:+38850787 None:intergenic
TTTGATTCTATTCGTGTGTC+AGG 0.403272 6.2:-38851774 MS.gene98898:CDS
AGAAACCCACTCTTACTATA+AGG 0.408843 6.2:+38850844 None:intergenic
TAGATCTAATGAGACTAGTT+GGG 0.409391 6.2:-38850713 MS.gene98898:CDS
GAATAAGTCCACTCAAGAAT+GGG 0.410231 6.2:-38850551 MS.gene98898:CDS
GCAATATGAGATTGATGTTA+GGG 0.414210 6.2:-38851319 MS.gene98898:CDS
TAAAAGTTCCAGCTAAAATA+GGG 0.417727 6.2:+38850674 None:intergenic
TAGTTGGGGAGTTAGGTCTT+TGG 0.423498 6.2:-38850698 MS.gene98898:CDS
TGAATAAGTCCACTCAAGAA+TGG 0.424588 6.2:-38850552 MS.gene98898:CDS
GAACAAACACATTTGGAGTT+GGG 0.430179 6.2:+38850419 None:intergenic
CCATCTTATGTTATTTGCAA+TGG 0.433181 6.2:-38850359 MS.gene98898:CDS
TGTATAAGATAATTGAATGT+TGG 0.433790 6.2:-38851230 MS.gene98898:CDS
GAGTGTTGTGAATGCGTTGA+TGG 0.434282 6.2:-38850901 MS.gene98898:CDS
GTCCGTATCGTGAGATGGTC+CGG 0.436727 6.2:-38851812 MS.gene98898:CDS
TTAGATCTAATGAGACTAGT+TGG 0.437286 6.2:-38850714 MS.gene98898:CDS
GGTTCAAGGTCAACCTAAGA+TGG 0.441183 6.2:-38851157 MS.gene98898:CDS
GTGTTGTCATTCATGATTGA+AGG 0.442888 6.2:+38850871 None:intergenic
CAATTAGTTCTCTATGATCA+TGG 0.448311 6.2:-38850397 MS.gene98898:CDS
CCATTGCAAATAACATAAGA+TGG 0.449331 6.2:+38850359 None:intergenic
AGGTACTTCTACTACTAGTA+AGG 0.451010 6.2:-38851271 MS.gene98898:CDS
AGAATAATCGTAAGAACAAA+AGG 0.453219 6.2:-38851737 MS.gene98898:CDS
GATGGGTAGTATGATCCTTA+AGG 0.457082 6.2:-38851139 MS.gene98898:CDS
ACTAGTGTGGTTGTGTCTGA+TGG 0.461191 6.2:-38851447 MS.gene98898:CDS
CCAATACAAACACCAGGAAC+TGG 0.467377 6.2:+38851582 None:intergenic
TGAACAAACACATTTGGAGT+TGG 0.468046 6.2:+38850418 None:intergenic
CAAACAATATTCTTGTTCTC+CGG 0.476545 6.2:+38851793 None:intergenic
AGAAGTGAAATGTGTGTGAT+TGG 0.479419 6.2:-38851543 MS.gene98898:CDS
ATTTCTGATGATATTTCCAA+TGG 0.480319 6.2:-38851066 MS.gene98898:CDS
TCCAATGGGAAGGAGAATAT+CGG 0.490604 6.2:-38851051 MS.gene98898:CDS
TTTATGTTATCTAGGGTTCA+AGG 0.492567 6.2:-38851171 MS.gene98898:CDS
CATTGCAAATAACATAAGAT+GGG 0.496606 6.2:+38850360 None:intergenic
AACAACAACAACACTCTGGC+GGG 0.500717 6.2:-38851912 MS.gene98898:CDS
ACCGATATTCTCCTTCCCAT+TGG 0.505724 6.2:+38851050 None:intergenic
AAAAGGTATTAAATATAGGT+TGG 0.507633 6.2:-38850743 MS.gene98898:CDS
TCAAGACTAAGCTCTCTCAT+TGG 0.507939 6.2:+38850325 None:intergenic
CAGAAGAAGTGAATAACAGT+AGG 0.509848 6.2:-38851683 MS.gene98898:CDS
AGAGTTATGTTCACCATCCA+TGG 0.513297 6.2:+38850600 None:intergenic
CTCGTCGGGAACTGGAACGA+TGG 0.514539 6.2:+38851947 None:intergenic
AAAATCTAAAGGAGGATATG+TGG 0.514940 6.2:+38850492 None:intergenic
GGAGACAAAATTATCTACTC+TGG 0.518712 6.2:-38851405 MS.gene98898:CDS
CACAACCACACTAGTAGCAA+TGG 0.520232 6.2:+38851455 None:intergenic
AGAGAGCTTAGTCTTGATCA+TGG 0.523319 6.2:-38850319 MS.gene98898:CDS
CGGAAGATACTCAAATTGCA+TGG 0.524573 6.2:+38850990 None:intergenic
TGATGATATTTCCAATGGGA+AGG 0.528993 6.2:-38851061 MS.gene98898:CDS
ATTGATGTTAGGGTTATTCG+AGG 0.529934 6.2:-38851309 MS.gene98898:CDS
TTATAAGTTTATGTTATCTA+GGG 0.530619 6.2:-38851178 MS.gene98898:CDS
AGACTAAGCTCTCTCATTGG+AGG 0.531678 6.2:+38850328 None:intergenic
TACATGGTCAACCACAAGCT+GGG 0.533174 6.2:-38851518 MS.gene98898:CDS
AATCTATGCAGAAGCTTAGA+GGG 0.534148 6.2:-38851878 MS.gene98898:CDS
ACATCCAATGCAAAATCTAA+AGG 0.535372 6.2:+38850481 None:intergenic
CTCCCTAGTCAAAACAAGCC+CGG 0.538168 6.2:+38850639 None:intergenic
GAGAGCTTAGTCTTGATCAT+GGG 0.538487 6.2:-38850318 MS.gene98898:CDS
ACAACCACACTAGTAGCAAT+GGG 0.544777 6.2:+38851456 None:intergenic
TCATCAGAAATGACATACAT+AGG 0.547565 6.2:+38851078 None:intergenic
TGGGCTATGACTAATATAGC+TGG 0.552213 6.2:+38850438 None:intergenic
ATGTGTGTGATTGGTTTACA+TGG 0.563933 6.2:-38851534 MS.gene98898:CDS
CTCCGGACCATCTCACGATA+CGG 0.564668 6.2:+38851810 None:intergenic
TTACATGGTCAACCACAAGC+TGG 0.564688 6.2:-38851519 MS.gene98898:CDS
ACTTTACCTTATAGTAAGAG+TGG 0.565544 6.2:-38850850 MS.gene98898:CDS
AAATCTAAAGGAGGATATGT+GGG 0.566883 6.2:+38850493 None:intergenic
GGAGCTTGTTCGCACTGCGA+TGG 0.569900 6.2:-38851847 MS.gene98898:CDS
TCACCGTCCGTATCGTGAGA+TGG 0.572522 6.2:-38851817 MS.gene98898:CDS
GGAACGAGGCAACCTTGCTA+TGG 0.574021 6.2:-38851352 MS.gene98898:CDS
TTTCTGATGATATTTCCAAT+GGG 0.579478 6.2:-38851065 MS.gene98898:CDS
AGATCTAATGAGACTAGTTG+GGG 0.582316 6.2:-38850712 MS.gene98898:CDS
AGAAGAAGTGAATAACAGTA+GGG 0.589576 6.2:-38851682 MS.gene98898:CDS
GACTAAGCTCTCTCATTGGA+GGG 0.593113 6.2:+38850329 None:intergenic
CCTTCCCATTGCTACTAGTG+TGG 0.594545 6.2:-38851460 MS.gene98898:CDS
CTTTACCTTATAGTAAGAGT+GGG 0.599279 6.2:-38850849 MS.gene98898:CDS
GGATACAATGATGATGATCA+AGG 0.600833 6.2:-38851426 MS.gene98898:CDS
TGTGAAGCATGACCAGAAGT+TGG 0.601945 6.2:-38851373 MS.gene98898:CDS
CTTGCTTCCTCAGAGCATGA+CGG 0.602014 6.2:-38850947 MS.gene98898:CDS
GGAAGATACTCAAATTGCAT+GGG 0.603623 6.2:+38850991 None:intergenic
GCATACTTGTCACCATAGCA+AGG 0.603748 6.2:+38851340 None:intergenic
GTTCAAGGTCAACCTAAGAT+GGG 0.609539 6.2:-38851156 MS.gene98898:CDS
ATTTGAGTATCTTCCGAAGG+CGG 0.610126 6.2:-38850983 MS.gene98898:CDS
GCTGCTTTGATGAATGATCA+TGG 0.613817 6.2:-38851639 MS.gene98898:CDS
GCAATTTGAGTATCTTCCGA+AGG 0.614305 6.2:-38850986 MS.gene98898:CDS
AGAGCTTAGTCTTGATCATG+GGG 0.614589 6.2:-38850317 MS.gene98898:CDS
CAACAACAACAACACTCTGG+CGG 0.615255 6.2:-38851913 MS.gene98898:CDS
CAAATCACCCCATTCTTGAG+TGG 0.615312 6.2:+38850543 None:intergenic
GAAGCTTAGAGGGCAGAACA+AGG 0.621471 6.2:-38851868 MS.gene98898:CDS
TTCCTCTCCGTCATGCTCTG+AGG 0.624992 6.2:+38850940 None:intergenic
AAAATTATCTACTCTGGCCA+TGG 0.625235 6.2:-38851399 MS.gene98898:CDS
ACGATGGCGCGTGATATGGA+AGG 0.628460 6.2:+38851963 None:intergenic
TCCAATGCAAAATCTAAAGG+AGG 0.629567 6.2:+38850484 None:intergenic
ATTGCAAATAACATAAGATG+GGG 0.634153 6.2:+38850361 None:intergenic
ACACGGTTTCTGCAATGCGA+AGG 0.638201 6.2:+38850772 None:intergenic
GAAGCAAGTATGCTTAAGAG+AGG 0.642544 6.2:-38851117 MS.gene98898:CDS
CATTGGATGTATCAACGATG+AGG 0.644772 6.2:-38850468 MS.gene98898:CDS
AAATAATCAATCCCAGCTTG+TGG 0.645273 6.2:+38851507 None:intergenic
CCACACTAGTAGCAATGGGA+AGG 0.645358 6.2:+38851460 None:intergenic
CGATGGCGCGTGATATGGAA+GGG 0.650148 6.2:+38851964 None:intergenic
AATAAGTCCACTCAAGAATG+GGG 0.656512 6.2:-38850550 MS.gene98898:CDS
AGGTCGTTAATTTATGAATG+CGG 0.656564 6.2:-38850811 MS.gene98898:CDS
TTCCTCAGAGCATGACGGAG+AGG 0.663867 6.2:-38850942 MS.gene98898:CDS
ATATCACCAATACAAACACC+AGG 0.674752 6.2:+38851576 None:intergenic
GGAAGGAGAATATCGGTGTG+AGG 0.681400 6.2:-38851044 MS.gene98898:CDS
CATGACCAGAAGTTGGAACG+AGG 0.683118 6.2:-38851366 MS.gene98898:CDS
GGACCATCTCACGATACGGA+CGG 0.685403 6.2:+38851814 None:intergenic
GGTCATGCTTCACATCACCA+TGG 0.716679 6.2:+38851382 None:intergenic
GAGCTTAGTCTTGATCATGG+GGG 0.762444 6.2:-38850316 MS.gene98898:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAGTTTATGTTATCTA+GGG - chr6.2:38851091-38851110 MS.gene98898:CDS 15.0%
!! TTTATAAGTTTATGTTATCT+AGG - chr6.2:38851090-38851109 MS.gene98898:CDS 15.0%
!! TATCTTGATAAGAAAATCAT+TGG - chr6.2:38850663-38850682 MS.gene98898:CDS 20.0%
!! TGTATAAGATAATTGAATGT+TGG - chr6.2:38851039-38851058 MS.gene98898:CDS 20.0%
!!! AAAAGGTATTAAATATAGGT+TGG - chr6.2:38851526-38851545 MS.gene98898:CDS 20.0%
!!! CACAAAAAGGTATTAAATAT+AGG - chr6.2:38851522-38851541 MS.gene98898:CDS 20.0%
! ACATAGGATTAGAACATAAT+TGG + chr6.2:38851178-38851197 None:intergenic 25.0%
! ACTAATTGAACAAACACATT+TGG + chr6.2:38851860-38851879 None:intergenic 25.0%
! AGAATAATCGTAAGAACAAA+AGG - chr6.2:38850532-38850551 MS.gene98898:CDS 25.0%
! ATAAAAGTTCCAGCTAAAAT+AGG + chr6.2:38851599-38851618 None:intergenic 25.0%
! ATTGCAAATAACATAAGATG+GGG + chr6.2:38851911-38851930 None:intergenic 25.0%
! ATTTCTGATGATATTTCCAA+TGG - chr6.2:38851203-38851222 MS.gene98898:CDS 25.0%
! CATTGCAAATAACATAAGAT+GGG + chr6.2:38851912-38851931 None:intergenic 25.0%
! TAAAAGTTCCAGCTAAAATA+GGG + chr6.2:38851598-38851617 None:intergenic 25.0%
! TTTCTGATGATATTTCCAAT+GGG - chr6.2:38851204-38851223 MS.gene98898:CDS 25.0%
!!! AGTAAGGTTTTTGTTTATGA+TGG - chr6.2:38851014-38851033 MS.gene98898:CDS 25.0%
!!! ATTGAATGTTGGTTTGAAAA+AGG - chr6.2:38851050-38851069 MS.gene98898:CDS 25.0%
AAAATCTAAAGGAGGATATG+TGG + chr6.2:38851780-38851799 None:intergenic 30.0%
AAATCTAAAGGAGGATATGT+GGG + chr6.2:38851779-38851798 None:intergenic 30.0%
ACATCCAATGCAAAATCTAA+AGG + chr6.2:38851791-38851810 None:intergenic 30.0%
ACTTTACCTTATAGTAAGAG+TGG - chr6.2:38851419-38851438 MS.gene98898:CDS 30.0%
AGAAGAAGTGAATAACAGTA+GGG - chr6.2:38850587-38850606 MS.gene98898:CDS 30.0%
AGGTCGTTAATTTATGAATG+CGG - chr6.2:38851458-38851477 MS.gene98898:CDS 30.0%
CAAACAATATTCTTGTTCTC+CGG + chr6.2:38850479-38850498 None:intergenic 30.0%
CCATTGCAAATAACATAAGA+TGG + chr6.2:38851913-38851932 None:intergenic 30.0%
CTTTACCTTATAGTAAGAGT+GGG - chr6.2:38851420-38851439 MS.gene98898:CDS 30.0%
GACTTATTCAAAAGTCGATT+TGG + chr6.2:38851707-38851726 None:intergenic 30.0%
GCAATATGAGATTGATGTTA+GGG - chr6.2:38850950-38850969 MS.gene98898:CDS 30.0%
TCATCAGAAATGACATACAT+AGG + chr6.2:38851194-38851213 None:intergenic 30.0%
TGCAATATGAGATTGATGTT+AGG - chr6.2:38850949-38850968 MS.gene98898:CDS 30.0%
TTAGATCTAATGAGACTAGT+TGG - chr6.2:38851555-38851574 MS.gene98898:CDS 30.0%
TTCTCTATGATCATGGTAAT+TGG - chr6.2:38851879-38851898 MS.gene98898:CDS 30.0%
! ACTTTTATATGTGAGTTCAC+CGG - chr6.2:38851611-38851630 MS.gene98898:CDS 30.0%
! CAATTAGTTCTCTATGATCA+TGG - chr6.2:38851872-38851891 MS.gene98898:CDS 30.0%
! CCATCTTATGTTATTTGCAA+TGG - chr6.2:38851910-38851929 MS.gene98898:CDS 30.0%
! GGTTTGAAAAAGGTATATCT+GGG - chr6.2:38851060-38851079 MS.gene98898:CDS 30.0%
! GTTGTAATTTTGTAACTCGT+CGG + chr6.2:38850340-38850359 None:intergenic 30.0%
! TAATACCTTTTTGTGTCACA+CGG + chr6.2:38851517-38851536 None:intergenic 30.0%
! TAGATCTAATGAGACTAGTT+GGG - chr6.2:38851556-38851575 MS.gene98898:CDS 30.0%
! TGGTTTGAAAAAGGTATATC+TGG - chr6.2:38851059-38851078 MS.gene98898:CDS 30.0%
! TTGTAATTTTGTAACTCGTC+GGG + chr6.2:38850339-38850358 None:intergenic 30.0%
! TTTATGTTATCTAGGGTTCA+AGG - chr6.2:38851098-38851117 MS.gene98898:CDS 30.0%
!! AAGAGTGGGTTTCTTTTAAA+AGG - chr6.2:38851434-38851453 MS.gene98898:CDS 30.0%
!! AGAGTGGGTTTCTTTTAAAA+GGG - chr6.2:38851435-38851454 MS.gene98898:CDS 30.0%
AAAATTATCTACTCTGGCCA+TGG - chr6.2:38850870-38850889 MS.gene98898:CDS 35.0%
AAATAATCAATCCCAGCTTG+TGG + chr6.2:38850765-38850784 None:intergenic 35.0%
AAATCTATGCAGAAGCTTAG+AGG - chr6.2:38850390-38850409 MS.gene98898:CDS 35.0%
AATAAGTCCACTCAAGAATG+GGG - chr6.2:38851719-38851738 MS.gene98898:CDS 35.0%
AATCTATGCAGAAGCTTAGA+GGG - chr6.2:38850391-38850410 MS.gene98898:CDS 35.0%
AGAAACCCACTCTTACTATA+AGG + chr6.2:38851428-38851447 None:intergenic 35.0%
AGAAGTGAAATGTGTGTGAT+TGG - chr6.2:38850726-38850745 MS.gene98898:CDS 35.0%
AGGTACTTCTACTACTAGTA+AGG - chr6.2:38850998-38851017 MS.gene98898:CDS 35.0%
ATATCACCAATACAAACACC+AGG + chr6.2:38850696-38850715 None:intergenic 35.0%
ATTGATGTTAGGGTTATTCG+AGG - chr6.2:38850960-38850979 MS.gene98898:CDS 35.0%
CAGAAGAAGTGAATAACAGT+AGG - chr6.2:38850586-38850605 MS.gene98898:CDS 35.0%
GAATAAGTCCACTCAAGAAT+GGG - chr6.2:38851718-38851737 MS.gene98898:CDS 35.0%
GGAAGATACTCAAATTGCAT+GGG + chr6.2:38851281-38851300 None:intergenic 35.0%
GGAGACAAAATTATCTACTC+TGG - chr6.2:38850864-38850883 MS.gene98898:CDS 35.0%
GTGTTGTCATTCATGATTGA+AGG + chr6.2:38851401-38851420 None:intergenic 35.0%
TAAGCATACTTGCTTCCTTA+AGG + chr6.2:38851148-38851167 None:intergenic 35.0%
TCCAATGCAAAATCTAAAGG+AGG + chr6.2:38851788-38851807 None:intergenic 35.0%
TGAATAAGTCCACTCAAGAA+TGG - chr6.2:38851717-38851736 MS.gene98898:CDS 35.0%
TGATGATATTTCCAATGGGA+AGG - chr6.2:38851208-38851227 MS.gene98898:CDS 35.0%
TGTTATTCACTTCTTCTGTC+TGG + chr6.2:38850584-38850603 None:intergenic 35.0%
TTACAACAACAACAACACTC+TGG - chr6.2:38850353-38850372 MS.gene98898:CDS 35.0%
TTTGATTCTATTCGTGTGTC+AGG - chr6.2:38850495-38850514 MS.gene98898:CDS 35.0%
! AGATCTAATGAGACTAGTTG+GGG - chr6.2:38851557-38851576 MS.gene98898:CDS 35.0%
! CATGCTAGTATGAGTTCTAA+TGG - chr6.2:38850786-38850805 MS.gene98898:CDS 35.0%
! CTTTTATATGTGAGTTCACC+GGG - chr6.2:38851612-38851631 MS.gene98898:CDS 35.0%
! GAAAAAGGTATATCTGGGTT+TGG - chr6.2:38851065-38851084 MS.gene98898:CDS 35.0%
! GAACAAACACATTTGGAGTT+GGG + chr6.2:38851853-38851872 None:intergenic 35.0%
! GGATACAATGATGATGATCA+AGG - chr6.2:38850843-38850862 MS.gene98898:CDS 35.0%
! TCCTCCTTTAGATTTTGCAT+TGG - chr6.2:38851784-38851803 MS.gene98898:CDS 35.0%
! TGAACAAACACATTTGGAGT+TGG + chr6.2:38851854-38851873 None:intergenic 35.0%
! TTAGGGTTATTCGAGGTTTT+CGG - chr6.2:38850967-38850986 MS.gene98898:CDS 35.0%
!! ATGTGTGTGATTGGTTTACA+TGG - chr6.2:38850735-38850754 MS.gene98898:CDS 35.0%
AAAATCATTGGTCCAGTTCC+TGG - chr6.2:38850675-38850694 MS.gene98898:CDS 40.0%
ACAACCACACTAGTAGCAAT+GGG + chr6.2:38850816-38850835 None:intergenic 40.0%
AGAAACCGTGTGACACAAAA+AGG - chr6.2:38851509-38851528 MS.gene98898:CDS 40.0%
AGAGTTATGTTCACCATCCA+TGG + chr6.2:38851672-38851691 None:intergenic 40.0%
AGGATCATACTACCCATCTT+AGG + chr6.2:38851128-38851147 None:intergenic 40.0%
ATTTGAGTATCTTCCGAAGG+CGG - chr6.2:38851286-38851305 MS.gene98898:CDS 40.0%
CATTGGATGTATCAACGATG+AGG - chr6.2:38851801-38851820 MS.gene98898:CDS 40.0%
CGGAAGATACTCAAATTGCA+TGG + chr6.2:38851282-38851301 None:intergenic 40.0%
GAAGCAAGTATGCTTAAGAG+AGG - chr6.2:38851152-38851171 MS.gene98898:CDS 40.0%
GACGGAGAGGAAAAATAAGA+GGG - chr6.2:38851340-38851359 MS.gene98898:CDS 40.0%
GATGGGTAGTATGATCCTTA+AGG - chr6.2:38851130-38851149 MS.gene98898:CDS 40.0%
GCAATTTGAGTATCTTCCGA+AGG - chr6.2:38851283-38851302 MS.gene98898:CDS 40.0%
GTTCAAGGTCAACCTAAGAT+GGG - chr6.2:38851113-38851132 MS.gene98898:CDS 40.0%
TCAAGACTAAGCTCTCTCAT+TGG + chr6.2:38851947-38851966 None:intergenic 40.0%
TCCAATGGGAAGGAGAATAT+CGG - chr6.2:38851218-38851237 MS.gene98898:CDS 40.0%
TGACGGAGAGGAAAAATAAG+AGG - chr6.2:38851339-38851358 MS.gene98898:CDS 40.0%
TGCGAAGGACAACTACAAAA+AGG + chr6.2:38851485-38851504 None:intergenic 40.0%
TGGGCTATGACTAATATAGC+TGG + chr6.2:38851834-38851853 None:intergenic 40.0%
! ATTCGAGGTTTTCGGTATGA+AGG - chr6.2:38850975-38850994 MS.gene98898:CDS 40.0%
! GAGGAAAAATAAGAGGGTGT+TGG - chr6.2:38851346-38851365 MS.gene98898:CDS 40.0%
! GCTGCTTTGATGAATGATCA+TGG - chr6.2:38850630-38850649 MS.gene98898:CDS 40.0%
!! AATTTTGGAAAAGCCGCCTT+CGG + chr6.2:38851302-38851321 None:intergenic 40.0%
!! AGAGAGCTTAGTCTTGATCA+TGG - chr6.2:38851950-38851969 MS.gene98898:CDS 40.0%
!! AGAGCTTAGTCTTGATCATG+GGG - chr6.2:38851952-38851971 MS.gene98898:CDS 40.0%
!! CTCTGAGGAAGCAAGAATTT+TGG + chr6.2:38851317-38851336 None:intergenic 40.0%
!! GAGAGCTTAGTCTTGATCAT+GGG - chr6.2:38851951-38851970 MS.gene98898:CDS 40.0%
!! GCAAGCGGAAATTTTAACCA+TGG - chr6.2:38851652-38851671 MS.gene98898:CDS 40.0%
!! GCGGAAATTTTAACCATGGA+TGG - chr6.2:38851656-38851675 MS.gene98898:CDS 40.0%
!! GTGGGTTTCTTTTAAAAGGG+AGG - chr6.2:38851438-38851457 MS.gene98898:CDS 40.0%
!!! TCTTTGGACCCTATTTTAGC+TGG - chr6.2:38851587-38851606 MS.gene98898:CDS 40.0%
AACAACAACAACACTCTGGC+GGG - chr6.2:38850357-38850376 MS.gene98898:CDS 45.0%
ACCGATATTCTCCTTCCCAT+TGG + chr6.2:38851222-38851241 None:intergenic 45.0%
ACTAGTGTGGTTGTGTCTGA+TGG - chr6.2:38850822-38850841 MS.gene98898:CDS 45.0%
AGACTAAGCTCTCTCATTGG+AGG + chr6.2:38851944-38851963 None:intergenic 45.0%
ATCATGGGGGTAGAATTGAC+TGG - chr6.2:38851966-38851985 MS.gene98898:CDS 45.0%
CAAATCACCCCATTCTTGAG+TGG + chr6.2:38851729-38851748 None:intergenic 45.0%
CAACAACAACAACACTCTGG+CGG - chr6.2:38850356-38850375 MS.gene98898:CDS 45.0%
CACAACCACACTAGTAGCAA+TGG + chr6.2:38850817-38850836 None:intergenic 45.0%
CCAATACAAACACCAGGAAC+TGG + chr6.2:38850690-38850709 None:intergenic 45.0%
CCAGTTCCTGGTGTTTGTAT+TGG - chr6.2:38850687-38850706 MS.gene98898:CDS 45.0%
GACTAAGCTCTCTCATTGGA+GGG + chr6.2:38851943-38851962 None:intergenic 45.0%
GCATACTTGTCACCATAGCA+AGG + chr6.2:38850932-38850951 None:intergenic 45.0%
GGTTCAAGGTCAACCTAAGA+TGG - chr6.2:38851112-38851131 MS.gene98898:CDS 45.0%
TACATGGTCAACCACAAGCT+GGG - chr6.2:38850751-38850770 MS.gene98898:CDS 45.0%
TAGTTGGGGAGTTAGGTCTT+TGG - chr6.2:38851571-38851590 MS.gene98898:CDS 45.0%
TATTCGTGTGTCAGGTTTGC+TGG - chr6.2:38850503-38850522 MS.gene98898:CDS 45.0%
TGTGAAGCATGACCAGAAGT+TGG - chr6.2:38850896-38850915 MS.gene98898:CDS 45.0%
TTACATGGTCAACCACAAGC+TGG - chr6.2:38850750-38850769 MS.gene98898:CDS 45.0%
! ATGAGACTAGTTGGGGAGTT+AGG - chr6.2:38851564-38851583 MS.gene98898:CDS 45.0%
! GAGTGTTGTGAATGCGTTGA+TGG - chr6.2:38851368-38851387 MS.gene98898:CDS 45.0%
! TTTTGTAACTCGTCGGGAAC+TGG + chr6.2:38850333-38850352 None:intergenic 45.0%
!! GAGCTTAGTCTTGATCATGG+GGG - chr6.2:38851953-38851972 MS.gene98898:CDS 45.0%
!!! TGTTTTGACTAGGGAGCAAG+CGG - chr6.2:38851637-38851656 MS.gene98898:CDS 45.0%
ACACGGTTTCTGCAATGCGA+AGG + chr6.2:38851500-38851519 None:intergenic 50.0%
CATGACCAGAAGTTGGAACG+AGG - chr6.2:38850903-38850922 MS.gene98898:CDS 50.0%
CCACACTAGTAGCAATGGGA+AGG + chr6.2:38850812-38850831 None:intergenic 50.0%
CCTTCCCATTGCTACTAGTG+TGG - chr6.2:38850809-38850828 MS.gene98898:CDS 50.0%
CTCCCTAGTCAAAACAAGCC+CGG + chr6.2:38851633-38851652 None:intergenic 50.0%
CTTGCTTCCTCAGAGCATGA+CGG - chr6.2:38851322-38851341 MS.gene98898:CDS 50.0%
GAAGCTTAGAGGGCAGAACA+AGG - chr6.2:38850401-38850420 MS.gene98898:CDS 50.0%
GGAAGGAGAATATCGGTGTG+AGG - chr6.2:38851225-38851244 MS.gene98898:CDS 50.0%
GGTCATGCTTCACATCACCA+TGG + chr6.2:38850890-38850909 None:intergenic 50.0%
! CGAGGTTTTCGGTATGAAGG+AGG - chr6.2:38850978-38850997 MS.gene98898:CDS 50.0%
!!! CACCGGGCTTGTTTTGACTA+GGG - chr6.2:38851628-38851647 MS.gene98898:CDS 50.0%
!!! TCACCGGGCTTGTTTTGACT+AGG - chr6.2:38851627-38851646 MS.gene98898:CDS 50.0%
ACGATGGCGCGTGATATGGA+AGG + chr6.2:38850309-38850328 None:intergenic 55.0%
CGATGGCGCGTGATATGGAA+GGG + chr6.2:38850308-38850327 None:intergenic 55.0%
CTCCGGACCATCTCACGATA+CGG + chr6.2:38850462-38850481 None:intergenic 55.0%
GGAACGAGGCAACCTTGCTA+TGG - chr6.2:38850917-38850936 MS.gene98898:CDS 55.0%
GGACCATCTCACGATACGGA+CGG + chr6.2:38850458-38850477 None:intergenic 55.0%
GGTTGCCTCGTTCCAACTTC+TGG + chr6.2:38850911-38850930 None:intergenic 55.0%
GTCCGTATCGTGAGATGGTC+CGG - chr6.2:38850457-38850476 MS.gene98898:CDS 55.0%
TCACCGTCCGTATCGTGAGA+TGG - chr6.2:38850452-38850471 MS.gene98898:CDS 55.0%
TGGAACGATGGCGCGTGATA+TGG + chr6.2:38850313-38850332 None:intergenic 55.0%
TTCCTCTCCGTCATGCTCTG+AGG + chr6.2:38851332-38851351 None:intergenic 55.0%
! TTCCTCAGAGCATGACGGAG+AGG - chr6.2:38851327-38851346 MS.gene98898:CDS 55.0%
CTCGTCGGGAACTGGAACGA+TGG + chr6.2:38850325-38850344 None:intergenic 60.0%
! GGAGCTTGTTCGCACTGCGA+TGG - chr6.2:38850422-38850441 MS.gene98898:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 38850285 38852006 38850285 ID=MS.gene98898
chr6.2 mRNA 38850285 38852006 38850285 ID=MS.gene98898.t1;Parent=MS.gene98898
chr6.2 exon 38850285 38852006 38850285 ID=MS.gene98898.t1.exon1;Parent=MS.gene98898.t1
chr6.2 CDS 38850285 38852006 38850285 ID=cds.MS.gene98898.t1;Parent=MS.gene98898.t1
Gene Sequence

>MS.gene98898

ATGTATTTTCAAAATTCAAACCCTTCCATATCACGCGCCATCGTTCCAGTTCCCGACGAGTTACAAAATTACAACAACAACAACACTCTGGCGGGAAAAGCTTCAAAATCTATGCAGAAGCTTAGAGGGCAGAACAAGGAGCTTGTTCGCACTGCGATGGATGCAGATCACCGTCCGTATCGTGAGATGGTCCGGAGAACAAGAATATTGTTTGATTCTATTCGTGTGTCAGGTTTGCTGGAAGAAGAGAATAATCGTAAGAACAAAAGGTATTTGAAAGCTTATTCTTTGTTGAACCAGACAGAAGAAGTGAATAACAGTAGGGTTCGAAATGACTTGATAGCTGCTGCTTTGATGAATGATCATGGTATGTATTTGTATCTTGATAAGAAAATCATTGGTCCAGTTCCTGGTGTTTGTATTGGTGATATTTTTCTCTATAGAAGTGAAATGTGTGTGATTGGTTTACATGGTCAACCACAAGCTGGGATTGATTATTTACATGCTAGTATGAGTTCTAATGGCCTTCCCATTGCTACTAGTGTGGTTGTGTCTGATGGATACAATGATGATGATCAAGGAGACAAAATTATCTACTCTGGCCATGGTGATGTGAAGCATGACCAGAAGTTGGAACGAGGCAACCTTGCTATGGTGACAAGTATGCAATATGAGATTGATGTTAGGGTTATTCGAGGTTTTCGGTATGAAGGAGGTACTTCTACTACTAGTAAGGTTTTTGTTTATGATGGCTTGTATAAGATAATTGAATGTTGGTTTGAAAAAGGTATATCTGGGTTTGGTGTTTATAAGTTTATGTTATCTAGGGTTCAAGGTCAACCTAAGATGGGTAGTATGATCCTTAAGGAAGCAAGTATGCTTAAGAGAGGCCAATTATGTTCTAATCCTATGTATGTCATTTCTGATGATATTTCCAATGGGAAGGAGAATATCGGTGTGAGGCTATATAATGACATTGACAGTGATCGCTATCCCATGCAATTTGAGTATCTTCCGAAGGCGGCTTTTCCAAAATTCTTGCTTCCTCAGAGCATGACGGAGAGGAAAAATAAGAGGGTGTTGGAGTGTTGTGAATGCGTTGATGGATGTTTTCCTTCAATCATGAATGACAACACTTTACCTTATAGTAAGAGTGGGTTTCTTTTAAAAGGGAGGTCGTTAATTTATGAATGCGGTCCTTTTTGTAGTTGTCCTTCGCATTGCAGAAACCGTGTGACACAAAAAGGTATTAAATATAGGTTGGAAGTGTTTAGATCTAATGAGACTAGTTGGGGAGTTAGGTCTTTGGACCCTATTTTAGCTGGAACTTTTATATGTGAGTTCACCGGGCTTGTTTTGACTAGGGAGCAAGCGGAAATTTTAACCATGGATGGTGAACATAACTCTTCGATGATATATCCAAATCGACTTTTGAATAAGTCCACTCAAGAATGGGGTGATTTGTCGATGATAGATGCTAATCATGTGCATCCCACATATCCTCCTTTAGATTTTGCATTGGATGTATCAACGATGAGGAATGTTGCCAGCTATATTAGTCATAGCCCAACTCCAAATGTGTTTGTTCAATTAGTTCTCTATGATCATGGTAATTGGATGTTTCCCCATCTTATGTTATTTGCAATGGAGAACATCCCTCCAATGAGAGAGCTTAGTCTTGATCATGGGGGTAGAATTGACTGGAAAGCTCTCGATACGTAA
Protein sequence

>MS.gene98898.t1

MYFQNSNPSISRAIVPVPDELQNYNNNNTLAGKASKSMQKLRGQNKELVRTAMDADHRPYREMVRRTRILFDSIRVSGLLEEENNRKNKRYLKAYSLLNQTEEVNNSRVRNDLIAAALMNDHGMYLYLDKKIIGPVPGVCIGDIFLYRSEMCVIGLHGQPQAGIDYLHASMSSNGLPIATSVVVSDGYNDDDQGDKIIYSGHGDVKHDQKLERGNLAMVTSMQYEIDVRVIRGFRYEGGTSTTSKVFVYDGLYKIIECWFEKGISGFGVYKFMLSRVQGQPKMGSMILKEASMLKRGQLCSNPMYVISDDISNGKENIGVRLYNDIDSDRYPMQFEYLPKAAFPKFLLPQSMTERKNKRVLECCECVDGCFPSIMNDNTLPYSKSGFLLKGRSLIYECGPFCSCPSHCRNRVTQKGIKYRLEVFRSNETSWGVRSLDPILAGTFICEFTGLVLTREQAEILTMDGEHNSSMIYPNRLLNKSTQEWGDLSMIDANHVHPTYPPLDFALDVSTMRNVASYISHSPTPNVFVQLVLYDHGNWMFPHLMLFAMENIPPMRELSLDHGGRIDWKALDT