AlfalfaGEDB | MS.gene98917

M. sativa cultivar XinJiangDaYe / MS.gene98917

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008037 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022414 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048544 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00954.23 PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98917.t1	XP_013452041.1	91.7	840	64	2	1	837	1	837	0.00E+00	1480.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98917.t1	Q9XID3	58.9	816	306	18	28	832	30	827	4.9e-255	882.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98917.t1	A0A072U8G7	91.7	840	64	2	1	837	1	837	0.0e+00	1480.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98917.t1	MTR_6g043510	94.524	840	40	2	1	837	1	837	0.0	1538
MS.gene98917.t1	MTR_6g043790	84.719	818	118	5	25	837	26	841	0.0	1401
MS.gene98917.t1	MTR_3g107070	38.301	765	401	26	41	776	36	758	3.94e-139	432
MS.gene98917.t1	MTR_2g073250	36.985	776	412	25	41	790	58	782	2.73e-137	427
MS.gene98917.t1	MTR_1g099400	34.746	826	455	23	17	778	7	812	1.38e-135	424
MS.gene98917.t1	MTR_2g080080	37.257	773	417	24	41	793	58	782	2.52e-135	422
MS.gene98917.t1	MTR_1g012550	36.801	769	401	22	41	771	60	781	5.14e-131	411
MS.gene98917.t1	MTR_0280s0040	34.226	859	465	28	7	809	9	823	2.80e-126	399
MS.gene98917.t1	MTR_2g103810	36.585	779	430	26	22	771	30	773	1.96e-125	397
MS.gene98917.t1	MTR_2g080100	36.481	773	386	24	41	790	59	749	3.40e-125	394

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98917.t1	AT1G34300	61.893	803	273	19	28	817	30	812	0.0	946
MS.gene98917.t1	AT2G19130	36.029	816	441	24	3	774	1	779	2.48e-143	444
MS.gene98917.t1	AT5G24080	35.386	828	471	23	1	778	6	819	2.83e-143	445
MS.gene98917.t1	AT5G24080	37.411	703	382	21	123	778	1	692	1.66e-129	405
MS.gene98917.t1	AT5G24080	37.411	703	382	21	123	778	1	692	1.66e-129	405
MS.gene98917.t1	AT4G32300	55.627	311	135	3	461	771	467	774	2.30e-114	367
MS.gene98917.t1	AT4G00340	36.835	771	401	26	75	807	69	791	3.29e-113	364
MS.gene98917.t1	AT4G00340	36.722	787	401	28	75	807	69	812	9.89e-113	363
MS.gene98917.t1	AT5G35370	31.347	772	435	27	62	770	73	812	2.66e-100	331
MS.gene98917.t1	AT2G41890	30.769	793	454	24	13	773	14	743	2.98e-96	318

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Find 231 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTGTAGGAGGAAGG+TGG	0.546703	6.2:+38540822	MS.gene98917:CDS
AAACTCTTCATAGGCCCAAG+TGG	0.618732	6.2:-38542009	None:intergenic
AAAGGGTTCAAGGAGAAGCT+CGG	0.617949	6.2:+38541360	MS.gene98917:CDS
AAAGTTGTTCAAATGTTAGA+AGG	0.408181	6.2:+38542167	MS.gene98917:CDS
AAATCTGATGTTTACAGCTA+CGG	0.544339	6.2:+38541912	MS.gene98917:CDS
AACGTCTGCGACAAGGAATC+AGG	0.417097	6.2:-38540913	None:intergenic
AACTCCACTGCAGTTGACTC+CGG	0.546891	6.2:+38540139	MS.gene98917:CDS
AACTGATGTACCACCCAACC+TGG	0.517974	6.2:-38540242	None:intergenic
AACTGTTGAATTGGGAGTAC+CGG	0.494073	6.2:+38541640	MS.gene98917:CDS
AAGATTTGCAATCCACTCGG+GGG	0.737179	6.2:-38541877	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTGATGTTTACAGCTA+CGG	+	chr6.2:38541912-38541931	MS.gene98917:CDS	30.0%
ACTTACATTGCTGCTAATAT+AGG	-	chr6.2:38542261-38542280	None:intergenic	30.0%
AGAAAGTTGCAAAATTCCAA+TGG	-	chr6.2:38540527-38540546	None:intergenic	30.0%
AGGATTTATAGTACTTCTAG+AGG	+	chr6.2:38540652-38540671	MS.gene98917:CDS	30.0%
CAGTACTCATCATTTGAATT+TGG	+	chr6.2:38541506-38541525	MS.gene98917:CDS	30.0%
GAAATTTGTAGATGGCAAAA+GGG	-	chr6.2:38540347-38540366	None:intergenic	30.0%
GAATAGAAGAAAGACAAGAA+AGG	-	chr6.2:38539933-38539952	None:intergenic	30.0%
GGATTTATAGTACTTCTAGA+GGG	+	chr6.2:38540653-38540672	MS.gene98917:CDS	30.0%
TATAGTAGTGATTATGCTGA+TGG	+	chr6.2:38540580-38540599	MS.gene98917:CDS	30.0%
TGAAATTTGTAGATGGCAAA+AGG	-	chr6.2:38540348-38540367	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	38539902	38542415	38539902	ID=MS.gene98917
chr6.2	mRNA	38539902	38542415	38539902	ID=MS.gene98917.t1;Parent=MS.gene98917
chr6.2	exon	38539902	38542415	38539902	ID=MS.gene98917.t1.exon1;Parent=MS.gene98917.t1
chr6.2	CDS	38539902	38542415	38539902	ID=cds.MS.gene98917.t1;Parent=MS.gene98917.t1

Gene Sequence

>MS.gene98917

ATGTACCTTAAAACCTTTCTATTTTTAGCCTTTCTTGTCTTTCTTCTATTCACCGCCGTTACTGTTACCGCCGTCAACCCTGGCTCCACTCTCTCCGCCTCCACCAACAATTCATGGTCATCACAATCCTCCACTTTCTCCTTCCGTTTCATCCAAACAACCCCACCAACAACCCCACCTTCCTTCCACGCCGCCGTAGTCTACTCTGGTGGAGCTCCAGTTGTCTGGACAGCTGGAAACTCCACTGCAGTTGACTCCGGTGGCTCGTTTGAGTTTCAAACCAACGGGAATCTCCGTCTTGTCAACGGCTCAGGCGCTGTGAAATGGGAAAGTAACACAACCAGGTTGGGTGGTACATCAGTTGATATTGAAGATAGTGGCAAATTGGTCATTTTGAATGGGAAAAAAGAAGTTTGGTCAAGCTTTGATCATCTTACAGATACCCTTTTGCCATCTACAAATTTCAGTGTTGGTAAGGTATTGAAATCTGGTGATTATAGTTTTAGTCTTTCAAAGATTGGTAATTTGAGTTTGATTTGGAATGATAATATTACTTTTTGGACACATGGTTTGAATTCTTCTGTGAATGTTAGTTTGAGTAATCCTGTTTTAGGGTTAACATCCATTGGAATTTTGCAACTTTCTGATGTGAAATTGAATACACCTGTTGTTGTTGCTTATAGTAGTGATTATGCTGATGGTGGGAGTGATGTTTTGAGGGTTTTGAAGTTGGATAGTGATGGGAATTTGAGGATTTATAGTACTTCTAGAGGGAGTGGGAGTCCGATTGCGAGATGGGCGGCTGTTCAGGACCAGTGTCTGGTTTATGCTTTTTGTGGGAATTATGGTATTTGTAGTTATAATGATACGAATCCGATTTGTGGGTGTCCTTCGGAGAATTTCGAAGTGAATGATGGTGGAAAAGGGTGTAGGAGGAAGGTGGATCTTGCTAATTGTCGAGGGAATGAGACTATGTTGACGTTGGATCATACACAGTTTTTGACTTATCCTCCTGATTCCTTGTCGCAGACGTTTTTCATCGGTATATCAGCGTGTAGAGGGAATTGTCTCTCGGGGTCGGGTGCTTGTTATGCTTCTACCTCTTTGTCGGATGGAACGGGGCAATGTTACATTAAATCGGAGGATTTTGTTAGTGGTTATCATAGTCCTGCTTTACCTAGTACTTCTTATGTCAAAGTTTGTCCGCCGTTGGCTCCGAATCCACCGCCTACTTCTGGGGAGACGGTGAAGGAGAAGAGTTCGAGTGTACCTGGTTGGGTTGTTGTAGTTGTTATTTTGGGTACCCTTTTAGGTGTGGTTGCTATTGAAGGTGGTTTATGGTTTTGGTGTTGTAGAAAAACTGCAAGGTTTGGTGTATTGTCGGCTCAGTACGCTCTTCTTGAGTACGCTTCTGGTGCGCCTGTTCAGTTCACATACAAGGAGCTTCAGCGCGCGACAAAAGGGTTCAAGGAGAAGCTCGGAGCTGGTGGATTTGGTGCTGTGTATAGAGGAATTCTTGTTAACAAAACTGTTGTTGCGGTGAAACAGCTTGAAGGAATTGAGCAAGGTGAGAAACAGTTTAGGATGGAAGTTGCAACTATAAGCAGTACTCATCATTTGAATTTGGTGAGACTTATCGGCTTCTGCTCGGAAGGACGCCACAGGCTTTTAGTCTACGAGTACATGAAAAACAGTTCGTTGGATAACTTTTTATTCCCGAAAGAAGAGCAATCCGGAAAACTGTTGAATTGGGAGTACCGGTACAATATTGCACTTGGCACTGCTAGAGGAATCACATACCTTCACGAGGAGTGTCGCGACTGCATAGTCCACTGTGATATCAAACCTGAAAACATTCTCTTGGACGATAATTACGTCGCTAAAGTCTCGGATTTTGGTCTTGCAAAGCTCGTTAATCCGAAAGACCATAGACACAGGACTTTGACAAGTGTACGGGGAACAAGAGGATATTTAGCCCCCGAGTGGATTGCAAATCTTCCTACAACATCGAAATCTGATGTTTACAGCTACGGCATGGTCTTGTTAGAGATTGTGAGTGGAAGGAGGAACTTCGATGTCTCGGAGGAAACAAATAGGAAGAAGTTTTCCACTTGGGCCTATGAAGAGTTTGAGAAAGGTAACATCAAAGGAATTTTGGACAAAAGACTCGCAGATGTAGAAGTCGATACCGAGCAAGTTACAAGGGCAATTCAGGTATGCTTTTGGTGCATCCAAGAGCAGCCGTCTCAACGACCAGCGATGAGCAAAGTTGTTCAAATGTTAGAAGGAGTAAAAGAAATTGAGAAGCCACCTCCTCCTAAGTTTGTTGTTGAAGGACCTGTTAGTGGAACCAGCACCTATATTAGCAGCAATGTAAGTGCATTTTCCACAGTTGGAGCCTCGCCAAATGTTCCTTCGTCATCTTCATCAATCCAAACTAGCGGTGTTTCAAACTTTGCCTCGGGAAGAACACCTGAGAAGGCAAGTTCATCCCTTTTACAATCAGATCAATGA

Protein sequence

>MS.gene98917.t1

MYLKTFLFLAFLVFLLFTAVTVTAVNPGSTLSASTNNSWSSQSSTFSFRFIQTTPPTTPPSFHAAVVYSGGAPVVWTAGNSTAVDSGGSFEFQTNGNLRLVNGSGAVKWESNTTRLGGTSVDIEDSGKLVILNGKKEVWSSFDHLTDTLLPSTNFSVGKVLKSGDYSFSLSKIGNLSLIWNDNITFWTHGLNSSVNVSLSNPVLGLTSIGILQLSDVKLNTPVVVAYSSDYADGGSDVLRVLKLDSDGNLRIYSTSRGSGSPIARWAAVQDQCLVYAFCGNYGICSYNDTNPICGCPSENFEVNDGGKGCRRKVDLANCRGNETMLTLDHTQFLTYPPDSLSQTFFIGISACRGNCLSGSGACYASTSLSDGTGQCYIKSEDFVSGYHSPALPSTSYVKVCPPLAPNPPPTSGETVKEKSSSVPGWVVVVVILGTLLGVVAIEGGLWFWCCRKTARFGVLSAQYALLEYASGAPVQFTYKELQRATKGFKEKLGAGGFGAVYRGILVNKTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEYMKNSSLDNFLFPKEEQSGKLLNWEYRYNIALGTARGITYLHEECRDCIVHCDIKPENILLDDNYVAKVSDFGLAKLVNPKDHRHRTLTSVRGTRGYLAPEWIANLPTTSKSDVYSYGMVLLEIVSGRRNFDVSEETNRKKFSTWAYEEFEKGNIKGILDKRLADVEVDTEQVTRAIQVCFWCIQEQPSQRPAMSKVVQMLEGVKEIEKPPPPKFVVEGPVSGTSTYISSNVSAFSTVGASPNVPSSSSSIQTSGVSNFASGRTPEKASSSLLQSDQ