Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98918.t1 | KEH26068.1 | 85.4 | 233 | 31 | 1 | 1 | 233 | 1 | 230 | 2.70E-106 | 394.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98918.t1 | Q8S9H7 | 53.2 | 47 | 22 | 0 | 107 | 153 | 132 | 178 | 4.6e-09 | 63.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98918.t1 | A0A072UAF3 | 85.4 | 233 | 31 | 1 | 1 | 233 | 1 | 230 | 2.0e-106 | 394.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene98918.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98918.t1 | MTR_6g043490 | 87.554 | 233 | 26 | 1 | 1 | 233 | 1 | 230 | 3.81e-131 | 369 |
MS.gene98918.t1 | MTR_6g043480 | 85.408 | 233 | 31 | 1 | 1 | 233 | 1 | 230 | 3.68e-128 | 362 |
MS.gene98918.t1 | MTR_8g072990 | 67.470 | 249 | 56 | 5 | 1 | 232 | 1 | 241 | 2.02e-101 | 294 |
MS.gene98918.t1 | MTR_8g073050 | 57.872 | 235 | 86 | 8 | 1 | 233 | 1 | 224 | 1.50e-64 | 200 |
MS.gene98918.t1 | MTR_5g027570 | 39.241 | 79 | 45 | 1 | 102 | 180 | 87 | 162 | 8.48e-12 | 63.2 |
MS.gene98918.t1 | MTR_5g081860 | 39.744 | 78 | 42 | 2 | 107 | 184 | 125 | 197 | 1.82e-11 | 62.8 |
MS.gene98918.t1 | MTR_1g048660 | 47.170 | 53 | 28 | 0 | 108 | 160 | 13 | 65 | 2.03e-11 | 58.9 |
MS.gene98918.t1 | MTR_3g462790 | 51.064 | 47 | 23 | 0 | 107 | 153 | 147 | 193 | 2.83e-11 | 62.4 |
MS.gene98918.t1 | MTR_5g069710 | 51.064 | 47 | 23 | 0 | 107 | 153 | 132 | 178 | 2.92e-11 | 62.4 |
MS.gene98918.t1 | MTR_8g063870 | 31.000 | 100 | 52 | 1 | 109 | 191 | 94 | 193 | 5.81e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98918.t1 | AT5G58900 | 51.020 | 49 | 24 | 0 | 105 | 153 | 139 | 187 | 9.80e-12 | 63.5 |
MS.gene98918.t1 | AT2G38090 | 41.176 | 68 | 36 | 1 | 105 | 172 | 139 | 202 | 2.22e-11 | 62.8 |
MS.gene98918.t1 | AT3G11280 | 39.683 | 63 | 34 | 1 | 107 | 169 | 127 | 185 | 3.11e-11 | 62.0 |
MS.gene98918.t1 | AT3G11280 | 39.683 | 63 | 34 | 1 | 107 | 169 | 127 | 185 | 3.11e-11 | 62.0 |
MS.gene98918.t1 | AT5G05790 | 40.909 | 66 | 38 | 1 | 89 | 154 | 114 | 178 | 3.90e-11 | 62.0 |
MS.gene98918.t1 | AT5G05790 | 40.909 | 66 | 38 | 1 | 89 | 154 | 114 | 178 | 3.90e-11 | 62.0 |
MS.gene98918.t1 | AT1G49010 | 39.394 | 66 | 36 | 1 | 107 | 172 | 134 | 195 | 6.36e-11 | 61.6 |
Find 80 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTAGAAACATGGTCAAAATT+AGG | 0.206701 | 6.2:-38524546 | None:intergenic |
ACACATATGTGCATGGTTTA+AGG | 0.242121 | 6.2:+38525530 | MS.gene98918:CDS |
ACCACCATGCGTGGCAGGTT+GGG | 0.256884 | 6.2:-38524682 | None:intergenic |
AGTTGATTTGGAACTTCATT+TGG | 0.279966 | 6.2:+38525726 | MS.gene98918:CDS |
GTAAGATCGGTGGTCTTAAT+AGG | 0.326333 | 6.2:-38524465 | None:intergenic |
CCAATACCAAACTACTTTGT+TGG | 0.338742 | 6.2:+38524602 | MS.gene98918:CDS |
CCATAAAATGTTGGAACCTC+TGG | 0.369191 | 6.2:-38525616 | None:intergenic |
TAGAAACATGGTCAAAATTA+GGG | 0.380235 | 6.2:-38524545 | None:intergenic |
ATGCCATTCCCAAATGGATC+TGG | 0.387904 | 6.2:+38524750 | MS.gene98918:CDS |
GTTGATTTGGAACTTCATTT+GGG | 0.390852 | 6.2:+38525727 | MS.gene98918:CDS |
CCTGTTGTTTCTGTTGGTCA+TGG | 0.396346 | 6.2:+38525700 | MS.gene98918:CDS |
ACTCTTCCTGTTGTTTCTGT+TGG | 0.400089 | 6.2:+38525694 | MS.gene98918:CDS |
GTGATGGGGATGATTAAGTA+TGG | 0.403039 | 6.2:+38525409 | MS.gene98918:CDS |
CCAACAAAGTAGTTTGGTAT+TGG | 0.409889 | 6.2:-38524602 | None:intergenic |
GTCGAAGAACCCTAGCAATT+AGG | 0.409904 | 6.2:-38524707 | None:intergenic |
TGTCTTAGCTTATTAGTGAT+GGG | 0.419172 | 6.2:+38525394 | MS.gene98918:intron |
CCATGCGCCCAGATCCATTT+GGG | 0.420055 | 6.2:-38524758 | None:intergenic |
GCTATGCTACTAGCTTCTTC+AGG | 0.423580 | 6.2:+38525497 | MS.gene98918:CDS |
TGGTCATGGAGAAGTTGATT+TGG | 0.426283 | 6.2:+38525714 | MS.gene98918:CDS |
ACCATGCGCCCAGATCCATT+TGG | 0.427492 | 6.2:-38524759 | None:intergenic |
GTGGTACCAACAAAGTAGTT+TGG | 0.427880 | 6.2:-38524608 | None:intergenic |
CCACCATGCGTGGCAGGTTG+GGG | 0.429517 | 6.2:-38524681 | None:intergenic |
TACCACCATGCGTGGCAGGT+TGG | 0.432276 | 6.2:-38524683 | None:intergenic |
TTAAGTATGGAAAAGGGAAA+TGG | 0.433708 | 6.2:+38525422 | MS.gene98918:CDS |
AGGGTTCTTCGACCGTTACC+TGG | 0.436670 | 6.2:+38524717 | MS.gene98918:CDS |
GGGATGATTAAGTATGGAAA+AGG | 0.439099 | 6.2:+38525415 | MS.gene98918:CDS |
ATGTGCATGGTTTAAGGAAA+AGG | 0.449777 | 6.2:+38525536 | MS.gene98918:CDS |
CGTGGCAGGTTGGGGCCAAC+TGG | 0.450946 | 6.2:-38524673 | None:intergenic |
AGGCTACCACCATGCGTGGC+AGG | 0.474105 | 6.2:-38524687 | None:intergenic |
TTGTCTTAGCTTATTAGTGA+TGG | 0.474565 | 6.2:+38525393 | MS.gene98918:intron |
AGTGCTTGCTTCATAGTTGT+TGG | 0.477998 | 6.2:-38525665 | None:intergenic |
TAGTGATTCGAGGGGACTCA+TGG | 0.480822 | 6.2:-38524650 | None:intergenic |
TGGTCAAAATTAGGGATCAT+TGG | 0.484624 | 6.2:-38524537 | None:intergenic |
AAACCATGCACATATGTGTC+TGG | 0.497935 | 6.2:-38525526 | None:intergenic |
GTCTTAGCTTATTAGTGATG+GGG | 0.500061 | 6.2:+38525395 | MS.gene98918:intron |
TGGGTGTGTCCTTGAGCAGT+TGG | 0.505592 | 6.2:-38524630 | None:intergenic |
ATGGTTTAAGGAAAAGGAAA+AGG | 0.505645 | 6.2:+38525542 | MS.gene98918:CDS |
GTCAAGGAAGTTTGTAAGAT+CGG | 0.507950 | 6.2:-38524478 | None:intergenic |
CCATGACCAACAGAAACAAC+AGG | 0.512703 | 6.2:-38525700 | None:intergenic |
ATGGTGGTAGCCTAATTGCT+AGG | 0.514195 | 6.2:+38524697 | MS.gene98918:CDS |
GCATAGCTTTGAACTTGTTG+TGG | 0.515534 | 6.2:-38525481 | None:intergenic |
ACAAAGTAGTTTGGTATTGG+TGG | 0.516152 | 6.2:-38524599 | None:intergenic |
CCCAAATGGATCTGGGCGCA+TGG | 0.521852 | 6.2:+38524758 | MS.gene98918:CDS |
GATGAAGATATGTGTGGTGA+TGG | 0.524416 | 6.2:-38524507 | None:intergenic |
GGCCAACTGGTAGTGATTCG+AGG | 0.525016 | 6.2:-38524660 | None:intergenic |
GACACCATGCCATTCCCAAA+TGG | 0.525818 | 6.2:+38524744 | MS.gene98918:CDS |
CGCCCAGATCCATTTGGGAA+TGG | 0.528418 | 6.2:-38524753 | None:intergenic |
AATGGCATGGTGTCTGATCC+AGG | 0.529965 | 6.2:-38524735 | None:intergenic |
TGGCCCCAACCTGCCACGCA+TGG | 0.536871 | 6.2:+38524678 | MS.gene98918:CDS |
GATCTGGGCGCATGGTGCCT+TGG | 0.540441 | 6.2:+38524766 | MS.gene98918:CDS |
TCGACATGGTGGTGAAGATA+AGG | 0.542804 | 6.2:-38524573 | None:intergenic |
TTGGTACCACCAACTGCTCA+AGG | 0.544387 | 6.2:+38524621 | MS.gene98918:CDS |
GCTTCTCCTCCATAAAATGT+TGG | 0.545997 | 6.2:-38525625 | None:intergenic |
TGCCATTCCCAAATGGATCT+GGG | 0.547059 | 6.2:+38524751 | MS.gene98918:CDS |
GGTATTGGTGGTGTTCGACA+TGG | 0.551545 | 6.2:-38524587 | None:intergenic |
GGATGATTAAGTATGGAAAA+GGG | 0.561038 | 6.2:+38525416 | MS.gene98918:CDS |
GCCAACTGGTAGTGATTCGA+GGG | 0.562803 | 6.2:-38524659 | None:intergenic |
AAGATATGTGTGGTGATGGA+GGG | 0.566805 | 6.2:-38524503 | None:intergenic |
GAAGATATGTGTGGTGATGG+AGG | 0.578211 | 6.2:-38524504 | None:intergenic |
TGTTAACAATGATCTTGCAA+AGG | 0.578401 | 6.2:+38525576 | MS.gene98918:CDS |
TGGTGGTAGCCTAATTGCTA+GGG | 0.579794 | 6.2:+38524698 | MS.gene98918:CDS |
CCCCAACCTGCCACGCATGG+TGG | 0.582958 | 6.2:+38524681 | MS.gene98918:CDS |
GTGGTGATGGAGGGGAGTCA+AGG | 0.585853 | 6.2:-38524494 | None:intergenic |
GTGTGTCCTTGAGCAGTTGG+TGG | 0.587792 | 6.2:-38524627 | None:intergenic |
AGTGATTCGAGGGGACTCAT+GGG | 0.590746 | 6.2:-38524649 | None:intergenic |
AGAAACAACAGGAAGAGTCA+TGG | 0.595597 | 6.2:-38525689 | None:intergenic |
ATGGTGGTGAAGATAAGGAT+TGG | 0.601591 | 6.2:-38524568 | None:intergenic |
CATGCACATATGTGTCTGGT+AGG | 0.610902 | 6.2:-38525522 | None:intergenic |
AGATATGTGTGGTGATGGAG+GGG | 0.610906 | 6.2:-38524502 | None:intergenic |
ATGGTGTCTGATCCAGGTAA+CGG | 0.615417 | 6.2:-38524729 | None:intergenic |
AGATCCATTTGGGAATGGCA+TGG | 0.628500 | 6.2:-38524748 | None:intergenic |
TCGTGCTCTAATTGACTCCA+AGG | 0.629195 | 6.2:-38524783 | None:intergenic |
CTACCAGACACATATGTGCA+TGG | 0.648995 | 6.2:+38525523 | MS.gene98918:CDS |
CCCCTCGAATCACTACCAGT+TGG | 0.659827 | 6.2:+38524658 | MS.gene98918:CDS |
GATAAGGATTGGTAGAAACA+TGG | 0.661827 | 6.2:-38524557 | None:intergenic |
AATTAGGCTACCACCATGCG+TGG | 0.663656 | 6.2:-38524691 | None:intergenic |
AAGGAAGTTTGTAAGATCGG+TGG | 0.672731 | 6.2:-38524475 | None:intergenic |
ATTGGTGGTGTTCGACATGG+TGG | 0.678189 | 6.2:-38524584 | None:intergenic |
GCATTAGATGAAGATATGTG+TGG | 0.745900 | 6.2:-38524513 | None:intergenic |
CCAACTGGTAGTGATTCGAG+GGG | 0.784198 | 6.2:-38524658 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAATAAAAAAAATAATTG+GGG | - | chr6.2:38524939-38524958 | None:intergenic | 10.0% |
!! | AGAGAAATAAAAAAAATAAT+TGG | - | chr6.2:38524941-38524960 | None:intergenic | 10.0% |
!! | GAGAAATAAAAAAAATAATT+GGG | - | chr6.2:38524940-38524959 | None:intergenic | 10.0% |
!!! | TTTGAATAATAAATTTTAAG+GGG | - | chr6.2:38525291-38525310 | None:intergenic | 10.0% |
!!! | AATAAATTTTGGTCAAAAAA+AGG | + | chr6.2:38525230-38525249 | MS.gene98918:intron | 15.0% |
!!! | GGTTATTAGATAATAAATTT+TGG | + | chr6.2:38525219-38525238 | MS.gene98918:intron | 15.0% |
!!! | TGCCATAAAATTTGAAATAA+TGG | - | chr6.2:38525031-38525050 | None:intergenic | 20.0% |
! | TAGAAACATGGTCAAAATTA+GGG | - | chr6.2:38524548-38524567 | None:intergenic | 25.0% |
! | TATTATCTAATAACCTACGA+AGG | - | chr6.2:38525214-38525233 | None:intergenic | 25.0% |
! | TCTATGATAAATTGTGAGTT+TGG | - | chr6.2:38525342-38525361 | None:intergenic | 25.0% |
!! | GGCCATTATTTCAAATTTTA+TGG | + | chr6.2:38525026-38525045 | MS.gene98918:intron | 25.0% |
ATAACCTACGAAGGTTTAAT+TGG | - | chr6.2:38525205-38525224 | None:intergenic | 30.0% | |
ATGGTTTAAGGAAAAGGAAA+AGG | + | chr6.2:38525542-38525561 | MS.gene98918:CDS | 30.0% | |
CTCATTTCTATACCATATGT+TGG | + | chr6.2:38525005-38525024 | MS.gene98918:intron | 30.0% | |
GGATGATTAAGTATGGAAAA+GGG | + | chr6.2:38525416-38525435 | MS.gene98918:CDS | 30.0% | |
GTAGAAACATGGTCAAAATT+AGG | - | chr6.2:38524549-38524568 | None:intergenic | 30.0% | |
TGTCTTAGCTTATTAGTGAT+GGG | + | chr6.2:38525394-38525413 | MS.gene98918:intron | 30.0% | |
TGTTAACAATGATCTTGCAA+AGG | + | chr6.2:38525576-38525595 | MS.gene98918:CDS | 30.0% | |
TTAAGTATGGAAAAGGGAAA+TGG | + | chr6.2:38525422-38525441 | MS.gene98918:CDS | 30.0% | |
TTGAAATAATGGCCAACATA+TGG | - | chr6.2:38525020-38525039 | None:intergenic | 30.0% | |
TTGTCTTAGCTTATTAGTGA+TGG | + | chr6.2:38525393-38525412 | MS.gene98918:intron | 30.0% | |
!! | AGTTGATTTGGAACTTCATT+TGG | + | chr6.2:38525726-38525745 | MS.gene98918:CDS | 30.0% |
!! | GTTGATTTGGAACTTCATTT+GGG | + | chr6.2:38525727-38525746 | MS.gene98918:CDS | 30.0% |
AACTCCAATTAAACCTTCGT+AGG | + | chr6.2:38525198-38525217 | MS.gene98918:intron | 35.0% | |
ACACATATGTGCATGGTTTA+AGG | + | chr6.2:38525530-38525549 | MS.gene98918:CDS | 35.0% | |
ATGTGCATGGTTTAAGGAAA+AGG | + | chr6.2:38525536-38525555 | MS.gene98918:CDS | 35.0% | |
CCAACAAAGTAGTTTGGTAT+TGG | - | chr6.2:38524605-38524624 | None:intergenic | 35.0% | |
CCAATACCAAACTACTTTGT+TGG | + | chr6.2:38524602-38524621 | MS.gene98918:CDS | 35.0% | |
GCATTAGATGAAGATATGTG+TGG | - | chr6.2:38524516-38524535 | None:intergenic | 35.0% | |
GGGATGATTAAGTATGGAAA+AGG | + | chr6.2:38525415-38525434 | MS.gene98918:CDS | 35.0% | |
GTCAAGGAAGTTTGTAAGAT+CGG | - | chr6.2:38524481-38524500 | None:intergenic | 35.0% | |
GTCTTAGCTTATTAGTGATG+GGG | + | chr6.2:38525395-38525414 | MS.gene98918:intron | 35.0% | |
TGGTCAAAATTAGGGATCAT+TGG | - | chr6.2:38524540-38524559 | None:intergenic | 35.0% | |
! | ACAAAGTAGTTTGGTATTGG+TGG | - | chr6.2:38524602-38524621 | None:intergenic | 35.0% |
! | GATAAGGATTGGTAGAAACA+TGG | - | chr6.2:38524560-38524579 | None:intergenic | 35.0% |
AAACCATGCACATATGTGTC+TGG | - | chr6.2:38525529-38525548 | None:intergenic | 40.0% | |
AAGGAAGTTTGTAAGATCGG+TGG | - | chr6.2:38524478-38524497 | None:intergenic | 40.0% | |
AGAAACAACAGGAAGAGTCA+TGG | - | chr6.2:38525692-38525711 | None:intergenic | 40.0% | |
AGTGCTTGCTTCATAGTTGT+TGG | - | chr6.2:38525668-38525687 | None:intergenic | 40.0% | |
CCATAAAATGTTGGAACCTC+TGG | - | chr6.2:38525619-38525638 | None:intergenic | 40.0% | |
GATGAAGATATGTGTGGTGA+TGG | - | chr6.2:38524510-38524529 | None:intergenic | 40.0% | |
GCTTCTCCTCCATAAAATGT+TGG | - | chr6.2:38525628-38525647 | None:intergenic | 40.0% | |
GTGGTACCAACAAAGTAGTT+TGG | - | chr6.2:38524611-38524630 | None:intergenic | 40.0% | |
! | AACTCTCACTCTTTTTCCAG+AGG | + | chr6.2:38525600-38525619 | MS.gene98918:CDS | 40.0% |
! | ATGGTGGTGAAGATAAGGAT+TGG | - | chr6.2:38524571-38524590 | None:intergenic | 40.0% |
! | CCAGAGGTTCCAACATTTTA+TGG | + | chr6.2:38525616-38525635 | MS.gene98918:CDS | 40.0% |
! | GAGGTTCCAACATTTTATGG+AGG | + | chr6.2:38525619-38525638 | MS.gene98918:CDS | 40.0% |
! | GTAAGATCGGTGGTCTTAAT+AGG | - | chr6.2:38524468-38524487 | None:intergenic | 40.0% |
! | GTGATGGGGATGATTAAGTA+TGG | + | chr6.2:38525409-38525428 | MS.gene98918:CDS | 40.0% |
! | TGGTCATGGAGAAGTTGATT+TGG | + | chr6.2:38525714-38525733 | MS.gene98918:CDS | 40.0% |
!! | AAGATATGTGTGGTGATGGA+GGG | - | chr6.2:38524506-38524525 | None:intergenic | 40.0% |
!! | ACTCTTCCTGTTGTTTCTGT+TGG | + | chr6.2:38525694-38525713 | MS.gene98918:CDS | 40.0% |
!! | GCATAGCTTTGAACTTGTTG+TGG | - | chr6.2:38525484-38525503 | None:intergenic | 40.0% |
AGATCCATTTGGGAATGGCA+TGG | - | chr6.2:38524751-38524770 | None:intergenic | 45.0% | |
ATGCCATTCCCAAATGGATC+TGG | + | chr6.2:38524750-38524769 | MS.gene98918:CDS | 45.0% | |
ATGGTGGTAGCCTAATTGCT+AGG | + | chr6.2:38524697-38524716 | MS.gene98918:CDS | 45.0% | |
ATGGTGTCTGATCCAGGTAA+CGG | - | chr6.2:38524732-38524751 | None:intergenic | 45.0% | |
CATGCACATATGTGTCTGGT+AGG | - | chr6.2:38525525-38525544 | None:intergenic | 45.0% | |
CCATGACCAACAGAAACAAC+AGG | - | chr6.2:38525703-38525722 | None:intergenic | 45.0% | |
CTACCAGACACATATGTGCA+TGG | + | chr6.2:38525523-38525542 | MS.gene98918:CDS | 45.0% | |
GTCGAAGAACCCTAGCAATT+AGG | - | chr6.2:38524710-38524729 | None:intergenic | 45.0% | |
TGCCATTCCCAAATGGATCT+GGG | + | chr6.2:38524751-38524770 | MS.gene98918:CDS | 45.0% | |
TGGTGGTAGCCTAATTGCTA+GGG | + | chr6.2:38524698-38524717 | MS.gene98918:CDS | 45.0% | |
! | GCTATGCTACTAGCTTCTTC+AGG | + | chr6.2:38525497-38525516 | MS.gene98918:CDS | 45.0% |
! | TCGACATGGTGGTGAAGATA+AGG | - | chr6.2:38524576-38524595 | None:intergenic | 45.0% |
! | TCGTGCTCTAATTGACTCCA+AGG | - | chr6.2:38524786-38524805 | None:intergenic | 45.0% |
!! | AGATATGTGTGGTGATGGAG+GGG | - | chr6.2:38524505-38524524 | None:intergenic | 45.0% |
!! | CCTGTTGTTTCTGTTGGTCA+TGG | + | chr6.2:38525700-38525719 | MS.gene98918:CDS | 45.0% |
!! | GAAGATATGTGTGGTGATGG+AGG | - | chr6.2:38524507-38524526 | None:intergenic | 45.0% |
!! | AACAATAAAAAAAATATTTA+AGG | - | chr6.2:38524826-38524845 | None:intergenic | 5.0% |
!!! | AATTTGAATAATAAATTTTA+AGG | - | chr6.2:38525293-38525312 | None:intergenic | 5.0% |
!!! | ATTTGAATAATAAATTTTAA+GGG | - | chr6.2:38525292-38525311 | None:intergenic | 5.0% |
AATGGCATGGTGTCTGATCC+AGG | - | chr6.2:38524738-38524757 | None:intergenic | 50.0% | |
AATTAGGCTACCACCATGCG+TGG | - | chr6.2:38524694-38524713 | None:intergenic | 50.0% | |
AGTGATTCGAGGGGACTCAT+GGG | - | chr6.2:38524652-38524671 | None:intergenic | 50.0% | |
GACACCATGCCATTCCCAAA+TGG | + | chr6.2:38524744-38524763 | MS.gene98918:CDS | 50.0% | |
TAGTGATTCGAGGGGACTCA+TGG | - | chr6.2:38524653-38524672 | None:intergenic | 50.0% | |
TTGGTACCACCAACTGCTCA+AGG | + | chr6.2:38524621-38524640 | MS.gene98918:CDS | 50.0% | |
! | CCAACTGGTAGTGATTCGAG+GGG | - | chr6.2:38524661-38524680 | None:intergenic | 50.0% |
! | GCCAACTGGTAGTGATTCGA+GGG | - | chr6.2:38524662-38524681 | None:intergenic | 50.0% |
!! | ATTGGTGGTGTTCGACATGG+TGG | - | chr6.2:38524587-38524606 | None:intergenic | 50.0% |
!! | GGTATTGGTGGTGTTCGACA+TGG | - | chr6.2:38524590-38524609 | None:intergenic | 50.0% |
ACCATGCGCCCAGATCCATT+TGG | - | chr6.2:38524762-38524781 | None:intergenic | 55.0% | |
AGGGTTCTTCGACCGTTACC+TGG | + | chr6.2:38524717-38524736 | MS.gene98918:CDS | 55.0% | |
CCATGCGCCCAGATCCATTT+GGG | - | chr6.2:38524761-38524780 | None:intergenic | 55.0% | |
CCCCTCGAATCACTACCAGT+TGG | + | chr6.2:38524658-38524677 | MS.gene98918:CDS | 55.0% | |
CGCCCAGATCCATTTGGGAA+TGG | - | chr6.2:38524756-38524775 | None:intergenic | 55.0% | |
GTGTGTCCTTGAGCAGTTGG+TGG | - | chr6.2:38524630-38524649 | None:intergenic | 55.0% | |
TGGGTGTGTCCTTGAGCAGT+TGG | - | chr6.2:38524633-38524652 | None:intergenic | 55.0% | |
! | GGCCAACTGGTAGTGATTCG+AGG | - | chr6.2:38524663-38524682 | None:intergenic | 55.0% |
ACCACCATGCGTGGCAGGTT+GGG | - | chr6.2:38524685-38524704 | None:intergenic | 60.0% | |
CCCAAATGGATCTGGGCGCA+TGG | + | chr6.2:38524758-38524777 | MS.gene98918:CDS | 60.0% | |
TACCACCATGCGTGGCAGGT+TGG | - | chr6.2:38524686-38524705 | None:intergenic | 60.0% | |
!! | GTGGTGATGGAGGGGAGTCA+AGG | - | chr6.2:38524497-38524516 | None:intergenic | 60.0% |
AGGCTACCACCATGCGTGGC+AGG | - | chr6.2:38524690-38524709 | None:intergenic | 65.0% | |
CCACCATGCGTGGCAGGTTG+GGG | - | chr6.2:38524684-38524703 | None:intergenic | 65.0% | |
GATCTGGGCGCATGGTGCCT+TGG | + | chr6.2:38524766-38524785 | MS.gene98918:CDS | 65.0% | |
CCCCAACCTGCCACGCATGG+TGG | + | chr6.2:38524681-38524700 | MS.gene98918:CDS | 70.0% | |
TGGCCCCAACCTGCCACGCA+TGG | + | chr6.2:38524678-38524697 | MS.gene98918:CDS | 70.0% | |
! | CGTGGCAGGTTGGGGCCAAC+TGG | - | chr6.2:38524676-38524695 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 38524462 | 38525759 | 38524462 | ID=MS.gene98918 |
chr6.2 | mRNA | 38524462 | 38525759 | 38524462 | ID=MS.gene98918.t1;Parent=MS.gene98918 |
chr6.2 | exon | 38524462 | 38524805 | 38524462 | ID=MS.gene98918.t1.exon1;Parent=MS.gene98918.t1 |
chr6.2 | CDS | 38524462 | 38524805 | 38524462 | ID=cds.MS.gene98918.t1;Parent=MS.gene98918.t1 |
chr6.2 | exon | 38525402 | 38525759 | 38525402 | ID=MS.gene98918.t1.exon2;Parent=MS.gene98918.t1 |
chr6.2 | CDS | 38525402 | 38525759 | 38525402 | ID=cds.MS.gene98918.t1;Parent=MS.gene98918.t1 |
Gene Sequence |
Protein sequence |