Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98919.t1 | KEH26068.1 | 87 | 230 | 29 | 1 | 1 | 229 | 1 | 230 | 4.90E-108 | 400.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98919.t1 | Q8S9H7 | 45.0 | 60 | 33 | 0 | 93 | 152 | 119 | 178 | 5.3e-10 | 66.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98919.t1 | A0A072UAF3 | 87.0 | 230 | 29 | 1 | 1 | 229 | 1 | 230 | 3.5e-108 | 400.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene98919.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98919.t1 | MTR_6g043490 | 90.000 | 230 | 22 | 1 | 1 | 229 | 1 | 230 | 1.06e-131 | 370 |
MS.gene98919.t1 | MTR_6g043480 | 86.087 | 230 | 31 | 1 | 1 | 229 | 1 | 230 | 4.80e-126 | 356 |
MS.gene98919.t1 | MTR_8g072990 | 67.871 | 249 | 51 | 7 | 1 | 228 | 1 | 241 | 4.08e-102 | 296 |
MS.gene98919.t1 | MTR_8g073050 | 56.410 | 234 | 87 | 9 | 1 | 229 | 1 | 224 | 2.31e-63 | 197 |
MS.gene98919.t1 | MTR_5g027570 | 40.260 | 77 | 43 | 1 | 103 | 179 | 89 | 162 | 7.02e-13 | 66.2 |
MS.gene98919.t1 | MTR_4g111975 | 37.037 | 81 | 42 | 2 | 103 | 178 | 135 | 211 | 1.94e-12 | 65.5 |
MS.gene98919.t1 | MTR_3g462790 | 34.409 | 93 | 58 | 1 | 60 | 152 | 104 | 193 | 2.45e-12 | 65.5 |
MS.gene98919.t1 | MTR_5g081860 | 38.272 | 81 | 45 | 2 | 103 | 183 | 122 | 197 | 2.75e-12 | 65.1 |
MS.gene98919.t1 | MTR_1g048660 | 47.170 | 53 | 28 | 0 | 107 | 159 | 13 | 65 | 5.92e-12 | 60.5 |
MS.gene98919.t1 | MTR_5g069710 | 48.000 | 50 | 26 | 0 | 103 | 152 | 129 | 178 | 6.21e-12 | 64.3 |
MS.gene98919.t1 | MTR_7g067080 | 43.103 | 58 | 33 | 0 | 95 | 152 | 129 | 186 | 1.47e-11 | 63.2 |
MS.gene98919.t1 | MTR_8g101650 | 36.486 | 74 | 42 | 1 | 99 | 172 | 98 | 166 | 1.51e-11 | 62.8 |
MS.gene98919.t1 | MTR_8g063870 | 33.654 | 104 | 53 | 3 | 89 | 178 | 66 | 167 | 1.80e-11 | 62.8 |
MS.gene98919.t1 | MTR_2g100930 | 48.000 | 50 | 26 | 0 | 103 | 152 | 106 | 155 | 2.11e-11 | 62.8 |
MS.gene98919.t1 | MTR_1g111830 | 40.299 | 67 | 38 | 1 | 100 | 166 | 118 | 182 | 3.81e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98919.t1 | AT5G05790 | 42.424 | 66 | 37 | 1 | 88 | 153 | 114 | 178 | 1.23e-12 | 65.9 |
MS.gene98919.t1 | AT5G05790 | 42.424 | 66 | 37 | 1 | 88 | 153 | 114 | 178 | 1.23e-12 | 65.9 |
MS.gene98919.t1 | AT5G58900 | 50.000 | 50 | 25 | 0 | 103 | 152 | 138 | 187 | 1.62e-12 | 65.9 |
MS.gene98919.t1 | AT2G38090 | 37.500 | 80 | 46 | 1 | 92 | 171 | 127 | 202 | 3.79e-12 | 64.7 |
MS.gene98919.t1 | AT1G49010 | 45.283 | 53 | 29 | 0 | 103 | 155 | 131 | 183 | 4.65e-12 | 64.7 |
MS.gene98919.t1 | AT5G01200 | 46.575 | 73 | 33 | 3 | 97 | 167 | 136 | 204 | 4.81e-12 | 64.3 |
MS.gene98919.t1 | AT3G11280 | 45.098 | 51 | 28 | 0 | 103 | 153 | 124 | 174 | 7.96e-12 | 63.5 |
MS.gene98919.t1 | AT3G11280 | 45.098 | 51 | 28 | 0 | 103 | 153 | 124 | 174 | 7.96e-12 | 63.5 |
MS.gene98919.t1 | AT5G08520 | 45.283 | 53 | 29 | 0 | 103 | 155 | 115 | 167 | 1.47e-11 | 63.2 |
MS.gene98919.t1 | AT3G16350 | 40.625 | 64 | 38 | 0 | 89 | 152 | 120 | 183 | 3.35e-11 | 62.4 |
MS.gene98919.t1 | AT5G04760 | 42.188 | 64 | 35 | 1 | 103 | 166 | 96 | 157 | 5.59e-11 | 60.5 |
MS.gene98919.t1 | AT5G56840 | 33.333 | 81 | 54 | 0 | 103 | 183 | 88 | 168 | 6.49e-11 | 60.5 |
Find 71 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATAAAATGTTGGAACTTC+TGG | 0.186491 | 6.2:-38517531 | None:intergenic |
ACACATATGTGCATGGTTTA+AGG | 0.242121 | 6.2:+38517445 | MS.gene98919:CDS |
TAGAAACATGGTCAAAATTA+AGG | 0.288393 | 6.2:-38516382 | None:intergenic |
ACCACCATGCGTGGTAGATT+GGG | 0.296363 | 6.2:-38516519 | None:intergenic |
ACCATGCGCCTAGATGAATT+TGG | 0.300308 | 6.2:-38516596 | None:intergenic |
AGTTGATGTGGAACTTCGTT+TGG | 0.364719 | 6.2:+38517632 | MS.gene98919:CDS |
TACCACCATGCGTGGTAGAT+TGG | 0.382814 | 6.2:-38516520 | None:intergenic |
GTGATGGGGATGATTAAGTA+TGG | 0.397169 | 6.2:+38517324 | MS.gene98919:CDS |
CATAGCTTTGAACTTGTTGT+GGG | 0.403047 | 6.2:-38517395 | None:intergenic |
GTCGGAGAACCCTTGCAATT+AGG | 0.416172 | 6.2:-38516544 | None:intergenic |
CAGACACCAAACTACTTTGT+TGG | 0.421185 | 6.2:+38516439 | MS.gene98919:CDS |
CCATGCGCCTAGATGAATTT+GGG | 0.429235 | 6.2:-38516595 | None:intergenic |
GTAAGATCAGTGATCTCAAT+AGG | 0.430973 | 6.2:-38516305 | None:intergenic |
TGGACATGGTGGTGAAGATT+AGG | 0.432756 | 6.2:-38516410 | None:intergenic |
TTAAGTATGGAAAAGGGAAA+TGG | 0.433708 | 6.2:+38517337 | MS.gene98919:CDS |
CGTGGTAGATTGGGGCCAAT+TGG | 0.438327 | 6.2:-38516510 | None:intergenic |
GGGATGATTAAGTATGGAAA+AGG | 0.439099 | 6.2:+38517330 | MS.gene98919:CDS |
GCTATGCTAATAGCTTCTTC+AGG | 0.441719 | 6.2:+38517412 | MS.gene98919:CDS |
TGTCTTAGCTTATTTGTGAT+GGG | 0.443985 | 6.2:+38517309 | MS.gene98919:intron |
ATGTGCATGGTTTAAGGAAA+AGG | 0.449777 | 6.2:+38517451 | MS.gene98919:CDS |
GTTGATGTGGAACTTCGTTT+GGG | 0.455063 | 6.2:+38517633 | MS.gene98919:CDS |
TGGTCAAAATTAAGGATCAT+TGG | 0.460749 | 6.2:-38516374 | None:intergenic |
TTGTCTTAGCTTATTTGTGA+TGG | 0.460760 | 6.2:+38517308 | MS.gene98919:intron |
AGGGTTCTCCGACCGTTACC+TGG | 0.477357 | 6.2:+38516554 | MS.gene98919:CDS |
AGTGCTTGCTTCATAGTTGT+TGG | 0.477998 | 6.2:-38517580 | None:intergenic |
GTGGTGCCAACAAAGTAGTT+TGG | 0.480218 | 6.2:-38516445 | None:intergenic |
GGTGTCTGTGGTGTTGGACA+TGG | 0.488513 | 6.2:-38516424 | None:intergenic |
GCATAGCTTTGAACTTGTTG+TGG | 0.493633 | 6.2:-38517396 | None:intergenic |
AAACCATGCACATATGTGTC+TGG | 0.497935 | 6.2:-38517441 | None:intergenic |
CAGTGATTCGAAAGGACTCA+TGG | 0.501395 | 6.2:-38516487 | None:intergenic |
CCTTTCGAATCACTGCCAAT+TGG | 0.501751 | 6.2:+38516495 | MS.gene98919:CDS |
TGGGTGTGTCCTTGAGCAGT+TGG | 0.505592 | 6.2:-38516467 | None:intergenic |
ATGGTTTAAGGAAAAGGAAA+AGG | 0.505645 | 6.2:+38517457 | MS.gene98919:CDS |
CATCTAGGCGCATGGTGCCT+TGG | 0.514594 | 6.2:+38516603 | MS.gene98919:CDS |
TAGTTTGGTGTCTGTGGTGT+TGG | 0.515926 | 6.2:-38516430 | None:intergenic |
GATGAAGATATGTGTGGTGA+TGG | 0.524416 | 6.2:-38516344 | None:intergenic |
AATGGCATGGTGTCTGATCC+AGG | 0.529965 | 6.2:-38516572 | None:intergenic |
GTCTTAGCTTATTTGTGATG+GGG | 0.532911 | 6.2:+38517310 | MS.gene98919:intron |
TGCCATTCCCAAATTCATCT+AGG | 0.536135 | 6.2:+38516588 | MS.gene98919:CDS |
CGCCTAGATGAATTTGGGAA+TGG | 0.541404 | 6.2:-38516590 | None:intergenic |
GCTTCTCCTCCATAAAATGT+TGG | 0.545997 | 6.2:-38517540 | None:intergenic |
TTGGCACCACCAACTGCTCA+AGG | 0.546165 | 6.2:+38516458 | MS.gene98919:CDS |
CCCAAATTCATCTAGGCGCA+TGG | 0.560290 | 6.2:+38516595 | MS.gene98919:CDS |
GGATGATTAAGTATGGAAAA+GGG | 0.561038 | 6.2:+38517331 | MS.gene98919:CDS |
AAGATATGTGTGGTGATGGA+GGG | 0.566805 | 6.2:-38516340 | None:intergenic |
GTGTGTCCTTGAGCAGTTGG+TGG | 0.577346 | 6.2:-38516464 | None:intergenic |
GAAGATATGTGTGGTGATGG+AGG | 0.578211 | 6.2:-38516341 | None:intergenic |
ATGGTGGTAGCCTAATTGCA+AGG | 0.581961 | 6.2:+38516534 | MS.gene98919:CDS |
TGCTAACAATGATCTTGCAA+AGG | 0.585046 | 6.2:+38517491 | MS.gene98919:CDS |
GTGGTGATGGAGGGGAGTCA+AGG | 0.585853 | 6.2:-38516331 | None:intergenic |
GTCTGTGGTGTTGGACATGG+TGG | 0.588691 | 6.2:-38516421 | None:intergenic |
ATGGTGGTGAAGATTAGGAT+TGG | 0.591721 | 6.2:-38516405 | None:intergenic |
ACAAAGTAGTTTGGTGTCTG+TGG | 0.591724 | 6.2:-38516436 | None:intergenic |
TGGCCCCAATCTACCACGCA+TGG | 0.600039 | 6.2:+38516515 | MS.gene98919:CDS |
CCACCATGCGTGGTAGATTG+GGG | 0.604059 | 6.2:-38516518 | None:intergenic |
CATGCACATATGTGTCTGGT+AGG | 0.610902 | 6.2:-38517437 | None:intergenic |
AGATATGTGTGGTGATGGAG+GGG | 0.610906 | 6.2:-38516339 | None:intergenic |
TCATGATCTAATTGACTCCA+AGG | 0.611161 | 6.2:-38516620 | None:intergenic |
ATAGCTTTGAACTTGTTGTG+GGG | 0.612354 | 6.2:-38517394 | None:intergenic |
ATGGTGTCTGATCCAGGTAA+CGG | 0.615417 | 6.2:-38516566 | None:intergenic |
AGTGATTCGAAAGGACTCAT+GGG | 0.623065 | 6.2:-38516486 | None:intergenic |
TGGTGATGGAGAAGTTGATG+TGG | 0.626753 | 6.2:+38517620 | MS.gene98919:CDS |
TGGTGGTAGCCTAATTGCAA+GGG | 0.634293 | 6.2:+38516535 | MS.gene98919:CDS |
CTACCAGACACATATGTGCA+TGG | 0.648995 | 6.2:+38517438 | MS.gene98919:CDS |
CCAATTGGCAGTGATTCGAA+AGG | 0.649536 | 6.2:-38516495 | None:intergenic |
TGTCTGATCCAGGTAACGGT+CGG | 0.658940 | 6.2:-38516562 | None:intergenic |
AATTAGGCTACCACCATGCG+TGG | 0.664326 | 6.2:-38516528 | None:intergenic |
GATTAGGATTGGTAGAAACA+TGG | 0.664721 | 6.2:-38516394 | None:intergenic |
CCCCAATCTACCACGCATGG+TGG | 0.666276 | 6.2:+38516518 | MS.gene98919:CDS |
AGATGAATTTGGGAATGGCA+TGG | 0.685001 | 6.2:-38516585 | None:intergenic |
GCATTAGATGAAGATATGTG+TGG | 0.745900 | 6.2:-38516350 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAATTTGGTAAAAAAAA+AGG | + | chr6.2:38517120-38517139 | MS.gene98919:intron | 10.0% |
!! | CAATAAAAAAAATAGATTTA+AGG | - | chr6.2:38516663-38516682 | None:intergenic | 10.0% |
!!! | TTTGAATAATAAATTTTAAG+AGG | - | chr6.2:38517208-38517227 | None:intergenic | 10.0% |
!!! | TTTTATTTTATAATCTATGA+AGG | - | chr6.2:38517104-38517123 | None:intergenic | 10.0% |
!! | ATTAGAGAAAGAAAAAAATT+GGG | - | chr6.2:38516779-38516798 | None:intergenic | 15.0% |
!! | TATTAGAGAAAGAAAAAAAT+TGG | - | chr6.2:38516780-38516799 | None:intergenic | 15.0% |
!! | TTAGAGAAAGAAAAAAATTG+GGG | - | chr6.2:38516778-38516797 | None:intergenic | 20.0% |
! | AGAAAAACTTGAAATTGAGA+TGG | + | chr6.2:38516922-38516941 | MS.gene98919:intron | 25.0% |
! | TAGAAACATGGTCAAAATTA+AGG | - | chr6.2:38516385-38516404 | None:intergenic | 25.0% |
! | TCTATGATAAATTGTGAGTT+TGG | - | chr6.2:38517259-38517278 | None:intergenic | 25.0% |
! | TTGAAATAATGGCCAATAAA+AGG | - | chr6.2:38516854-38516873 | None:intergenic | 25.0% |
ATGGTTTAAGGAAAAGGAAA+AGG | + | chr6.2:38517457-38517476 | MS.gene98919:CDS | 30.0% | |
GGATGATTAAGTATGGAAAA+GGG | + | chr6.2:38517331-38517350 | MS.gene98919:CDS | 30.0% | |
TGGTCAAAATTAAGGATCAT+TGG | - | chr6.2:38516377-38516396 | None:intergenic | 30.0% | |
TGTCTTAGCTTATTTGTGAT+GGG | + | chr6.2:38517309-38517328 | MS.gene98919:intron | 30.0% | |
TTAAGTATGGAAAAGGGAAA+TGG | + | chr6.2:38517337-38517356 | MS.gene98919:CDS | 30.0% | |
TTGTCTTAGCTTATTTGTGA+TGG | + | chr6.2:38517308-38517327 | MS.gene98919:intron | 30.0% | |
! | CTCATTTCTACTCCTTTTAT+TGG | + | chr6.2:38516839-38516858 | MS.gene98919:intron | 30.0% |
! | TGCCAGAGAATTTGAAATAA+TGG | - | chr6.2:38516865-38516884 | None:intergenic | 30.0% |
ACACATATGTGCATGGTTTA+AGG | + | chr6.2:38517445-38517464 | MS.gene98919:CDS | 35.0% | |
ATCACCAACAAAAAGAGTCA+TGG | - | chr6.2:38517607-38517626 | None:intergenic | 35.0% | |
ATGTGCATGGTTTAAGGAAA+AGG | + | chr6.2:38517451-38517470 | MS.gene98919:CDS | 35.0% | |
CCATAAAATGTTGGAACTTC+TGG | - | chr6.2:38517534-38517553 | None:intergenic | 35.0% | |
GCATTAGATGAAGATATGTG+TGG | - | chr6.2:38516353-38516372 | None:intergenic | 35.0% | |
GGCCATTATTTCAAATTCTC+TGG | + | chr6.2:38516860-38516879 | MS.gene98919:intron | 35.0% | |
GGGATGATTAAGTATGGAAA+AGG | + | chr6.2:38517330-38517349 | MS.gene98919:CDS | 35.0% | |
GTAAGATCAGTGATCTCAAT+AGG | - | chr6.2:38516308-38516327 | None:intergenic | 35.0% | |
GTCTTAGCTTATTTGTGATG+GGG | + | chr6.2:38517310-38517329 | MS.gene98919:intron | 35.0% | |
TGCTAACAATGATCTTGCAA+AGG | + | chr6.2:38517491-38517510 | MS.gene98919:CDS | 35.0% | |
! | ACTTCCATGACTCTTTTTGT+TGG | + | chr6.2:38517600-38517619 | MS.gene98919:CDS | 35.0% |
! | CCAGAAGTTCCAACATTTTA+TGG | + | chr6.2:38517531-38517550 | MS.gene98919:CDS | 35.0% |
! | GAAGTTCCAACATTTTATGG+AGG | + | chr6.2:38517534-38517553 | MS.gene98919:CDS | 35.0% |
! | GATTAGGATTGGTAGAAACA+TGG | - | chr6.2:38516397-38516416 | None:intergenic | 35.0% |
! | TCATGATCTAATTGACTCCA+AGG | - | chr6.2:38516623-38516642 | None:intergenic | 35.0% |
!! | ATAGCTTTGAACTTGTTGTG+GGG | - | chr6.2:38517397-38517416 | None:intergenic | 35.0% |
!! | ATGACTCTTTTTGTTGGTGA+TGG | + | chr6.2:38517606-38517625 | MS.gene98919:CDS | 35.0% |
!! | CATAGCTTTGAACTTGTTGT+GGG | - | chr6.2:38517398-38517417 | None:intergenic | 35.0% |
AAACCATGCACATATGTGTC+TGG | - | chr6.2:38517444-38517463 | None:intergenic | 40.0% | |
AGATGAATTTGGGAATGGCA+TGG | - | chr6.2:38516588-38516607 | None:intergenic | 40.0% | |
AGTGATTCGAAAGGACTCAT+GGG | - | chr6.2:38516489-38516508 | None:intergenic | 40.0% | |
AGTGCTTGCTTCATAGTTGT+TGG | - | chr6.2:38517583-38517602 | None:intergenic | 40.0% | |
CAGACACCAAACTACTTTGT+TGG | + | chr6.2:38516439-38516458 | MS.gene98919:CDS | 40.0% | |
GATGAAGATATGTGTGGTGA+TGG | - | chr6.2:38516347-38516366 | None:intergenic | 40.0% | |
GCTATGCTAATAGCTTCTTC+AGG | + | chr6.2:38517412-38517431 | MS.gene98919:CDS | 40.0% | |
GCTTCTCCTCCATAAAATGT+TGG | - | chr6.2:38517543-38517562 | None:intergenic | 40.0% | |
GTTGATGTGGAACTTCGTTT+GGG | + | chr6.2:38517633-38517652 | MS.gene98919:CDS | 40.0% | |
TGCCATTCCCAAATTCATCT+AGG | + | chr6.2:38516588-38516607 | MS.gene98919:CDS | 40.0% | |
! | AGTTGATGTGGAACTTCGTT+TGG | + | chr6.2:38517632-38517651 | MS.gene98919:CDS | 40.0% |
! | ATGGTGGTGAAGATTAGGAT+TGG | - | chr6.2:38516408-38516427 | None:intergenic | 40.0% |
! | GTGATGGGGATGATTAAGTA+TGG | + | chr6.2:38517324-38517343 | MS.gene98919:CDS | 40.0% |
!! | AAGATATGTGTGGTGATGGA+GGG | - | chr6.2:38516343-38516362 | None:intergenic | 40.0% |
!! | ACAAAGTAGTTTGGTGTCTG+TGG | - | chr6.2:38516439-38516458 | None:intergenic | 40.0% |
!! | GCATAGCTTTGAACTTGTTG+TGG | - | chr6.2:38517399-38517418 | None:intergenic | 40.0% |
ACCATGCGCCTAGATGAATT+TGG | - | chr6.2:38516599-38516618 | None:intergenic | 45.0% | |
ATGGTGGTAGCCTAATTGCA+AGG | + | chr6.2:38516534-38516553 | MS.gene98919:CDS | 45.0% | |
ATGGTGTCTGATCCAGGTAA+CGG | - | chr6.2:38516569-38516588 | None:intergenic | 45.0% | |
CAGTGATTCGAAAGGACTCA+TGG | - | chr6.2:38516490-38516509 | None:intergenic | 45.0% | |
CATGCACATATGTGTCTGGT+AGG | - | chr6.2:38517440-38517459 | None:intergenic | 45.0% | |
CCAATTGGCAGTGATTCGAA+AGG | - | chr6.2:38516498-38516517 | None:intergenic | 45.0% | |
CCATGCGCCTAGATGAATTT+GGG | - | chr6.2:38516598-38516617 | None:intergenic | 45.0% | |
CCTTTCGAATCACTGCCAAT+TGG | + | chr6.2:38516495-38516514 | MS.gene98919:CDS | 45.0% | |
CGCCTAGATGAATTTGGGAA+TGG | - | chr6.2:38516593-38516612 | None:intergenic | 45.0% | |
CTACCAGACACATATGTGCA+TGG | + | chr6.2:38517438-38517457 | MS.gene98919:CDS | 45.0% | |
TGGTGGTAGCCTAATTGCAA+GGG | + | chr6.2:38516535-38516554 | MS.gene98919:CDS | 45.0% | |
! | GTGGTGCCAACAAAGTAGTT+TGG | - | chr6.2:38516448-38516467 | None:intergenic | 45.0% |
! | TGGACATGGTGGTGAAGATT+AGG | - | chr6.2:38516413-38516432 | None:intergenic | 45.0% |
!! | AGATATGTGTGGTGATGGAG+GGG | - | chr6.2:38516342-38516361 | None:intergenic | 45.0% |
!! | GAAGATATGTGTGGTGATGG+AGG | - | chr6.2:38516344-38516363 | None:intergenic | 45.0% |
!! | TAGTTTGGTGTCTGTGGTGT+TGG | - | chr6.2:38516433-38516452 | None:intergenic | 45.0% |
!! | TGGTGATGGAGAAGTTGATG+TGG | + | chr6.2:38517620-38517639 | MS.gene98919:CDS | 45.0% |
!! | AGATTATAAAATAAAAAATT+TGG | + | chr6.2:38517108-38517127 | MS.gene98919:intron | 5.0% |
AATGGCATGGTGTCTGATCC+AGG | - | chr6.2:38516575-38516594 | None:intergenic | 50.0% | |
AATTAGGCTACCACCATGCG+TGG | - | chr6.2:38516531-38516550 | None:intergenic | 50.0% | |
ACCACCATGCGTGGTAGATT+GGG | - | chr6.2:38516522-38516541 | None:intergenic | 50.0% | |
CCCAAATTCATCTAGGCGCA+TGG | + | chr6.2:38516595-38516614 | MS.gene98919:CDS | 50.0% | |
GTCGGAGAACCCTTGCAATT+AGG | - | chr6.2:38516547-38516566 | None:intergenic | 50.0% | |
TACCACCATGCGTGGTAGAT+TGG | - | chr6.2:38516523-38516542 | None:intergenic | 50.0% | |
! | TGTCTGATCCAGGTAACGGT+CGG | - | chr6.2:38516565-38516584 | None:intergenic | 50.0% |
CCACCATGCGTGGTAGATTG+GGG | - | chr6.2:38516521-38516540 | None:intergenic | 55.0% | |
CGTGGTAGATTGGGGCCAAT+TGG | - | chr6.2:38516513-38516532 | None:intergenic | 55.0% | |
GTGTGTCCTTGAGCAGTTGG+TGG | - | chr6.2:38516467-38516486 | None:intergenic | 55.0% | |
TGGGTGTGTCCTTGAGCAGT+TGG | - | chr6.2:38516470-38516489 | None:intergenic | 55.0% | |
TTGGCACCACCAACTGCTCA+AGG | + | chr6.2:38516458-38516477 | MS.gene98919:CDS | 55.0% | |
! | GGTGTCTGTGGTGTTGGACA+TGG | - | chr6.2:38516427-38516446 | None:intergenic | 55.0% |
! | GTCTGTGGTGTTGGACATGG+TGG | - | chr6.2:38516424-38516443 | None:intergenic | 55.0% |
AGGGTTCTCCGACCGTTACC+TGG | + | chr6.2:38516554-38516573 | MS.gene98919:CDS | 60.0% | |
CATCTAGGCGCATGGTGCCT+TGG | + | chr6.2:38516603-38516622 | MS.gene98919:CDS | 60.0% | |
CCCCAATCTACCACGCATGG+TGG | + | chr6.2:38516518-38516537 | MS.gene98919:CDS | 60.0% | |
TGGCCCCAATCTACCACGCA+TGG | + | chr6.2:38516515-38516534 | MS.gene98919:CDS | 60.0% | |
!! | GTGGTGATGGAGGGGAGTCA+AGG | - | chr6.2:38516334-38516353 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 38516302 | 38517665 | 38516302 | ID=MS.gene98919 |
chr6.2 | mRNA | 38516302 | 38517665 | 38516302 | ID=MS.gene98919.t1;Parent=MS.gene98919 |
chr6.2 | exon | 38516302 | 38516642 | 38516302 | ID=MS.gene98919.t1.exon1;Parent=MS.gene98919.t1 |
chr6.2 | CDS | 38516302 | 38516642 | 38516302 | ID=cds.MS.gene98919.t1;Parent=MS.gene98919.t1 |
chr6.2 | exon | 38517317 | 38517665 | 38517317 | ID=MS.gene98919.t1.exon2;Parent=MS.gene98919.t1 |
chr6.2 | CDS | 38517317 | 38517665 | 38517317 | ID=cds.MS.gene98919.t1;Parent=MS.gene98919.t1 |
Gene Sequence |
Protein sequence |