Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98966.t1 | XP_014503993.1 | 41.5 | 272 | 129 | 8 | 4 | 249 | 9 | 276 | 8.10E-40 | 174.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98966.t1 | O49697 | 36.3 | 157 | 81 | 7 | 4 | 146 | 6 | 157 | 3.9e-14 | 80.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98966.t1 | A0A1S3UD91 | 41.5 | 272 | 129 | 8 | 4 | 249 | 9 | 276 | 5.9e-40 | 174.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene98966.t1 | TF | NAC |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98966.t1 | MTR_1g047060 | 70.213 | 94 | 25 | 1 | 111 | 204 | 1 | 91 | 6.57e-39 | 130 |
MS.gene98966.t1 | MTR_6g477900 | 33.708 | 178 | 86 | 8 | 4 | 167 | 6 | 165 | 7.32e-19 | 83.2 |
MS.gene98966.t1 | MTR_2g086880 | 36.000 | 150 | 75 | 8 | 6 | 146 | 20 | 157 | 2.15e-18 | 84.3 |
MS.gene98966.t1 | MTR_2g086880 | 35.333 | 150 | 76 | 7 | 6 | 146 | 20 | 157 | 2.43e-18 | 84.0 |
MS.gene98966.t1 | MTR_4g098630 | 37.975 | 158 | 80 | 8 | 2 | 146 | 4 | 156 | 2.81e-17 | 80.1 |
MS.gene98966.t1 | MTR_2g064090 | 35.897 | 156 | 82 | 7 | 4 | 147 | 6 | 155 | 6.53e-17 | 79.3 |
MS.gene98966.t1 | MTR_5g014300 | 35.220 | 159 | 84 | 7 | 2 | 146 | 4 | 157 | 8.44e-17 | 79.0 |
MS.gene98966.t1 | MTR_8g023930 | 35.570 | 149 | 86 | 5 | 4 | 146 | 24 | 168 | 1.81e-16 | 78.6 |
MS.gene98966.t1 | MTR_1g097300 | 35.556 | 135 | 77 | 4 | 6 | 136 | 21 | 149 | 5.07e-16 | 77.4 |
MS.gene98966.t1 | MTR_3g093050 | 30.270 | 185 | 103 | 7 | 1 | 171 | 19 | 191 | 5.72e-16 | 77.4 |
MS.gene98966.t1 | MTR_5g069030 | 34.810 | 158 | 80 | 7 | 4 | 147 | 25 | 173 | 7.48e-16 | 77.0 |
MS.gene98966.t1 | MTR_3g093050 | 30.270 | 185 | 103 | 7 | 1 | 171 | 19 | 191 | 7.79e-16 | 77.0 |
MS.gene98966.t1 | MTR_3g096140 | 33.140 | 172 | 93 | 7 | 3 | 160 | 6 | 169 | 2.01e-15 | 74.3 |
MS.gene98966.t1 | MTR_8g467490 | 31.481 | 162 | 85 | 6 | 6 | 147 | 16 | 171 | 2.87e-15 | 74.7 |
MS.gene98966.t1 | MTR_7g105170 | 30.909 | 165 | 93 | 6 | 1 | 147 | 1 | 162 | 3.26e-15 | 73.2 |
MS.gene98966.t1 | MTR_3g064580 | 33.962 | 159 | 81 | 9 | 4 | 147 | 6 | 155 | 3.45e-15 | 75.1 |
MS.gene98966.t1 | MTR_5g040420 | 32.298 | 161 | 84 | 7 | 6 | 147 | 16 | 170 | 3.80e-15 | 74.3 |
MS.gene98966.t1 | MTR_5g076850 | 31.818 | 176 | 95 | 9 | 4 | 163 | 6 | 172 | 3.84e-15 | 74.7 |
MS.gene98966.t1 | MTR_8g094580 | 32.716 | 162 | 81 | 7 | 4 | 148 | 7 | 157 | 4.38e-15 | 73.6 |
MS.gene98966.t1 | MTR_2g080010 | 30.303 | 165 | 93 | 5 | 4 | 162 | 15 | 163 | 4.83e-15 | 73.9 |
MS.gene98966.t1 | MTR_4g094302 | 29.560 | 159 | 87 | 7 | 4 | 148 | 11 | 158 | 6.97e-15 | 71.2 |
MS.gene98966.t1 | MTR_3g093040 | 31.013 | 158 | 86 | 6 | 4 | 147 | 108 | 256 | 9.20e-15 | 72.8 |
MS.gene98966.t1 | MTR_1g090720 | 36.196 | 163 | 77 | 7 | 4 | 147 | 42 | 196 | 1.00e-14 | 73.6 |
MS.gene98966.t1 | MTR_7g005280 | 33.333 | 156 | 80 | 6 | 4 | 147 | 15 | 158 | 1.00e-14 | 72.0 |
MS.gene98966.t1 | MTR_0036s0150 | 32.258 | 155 | 86 | 6 | 6 | 148 | 7 | 154 | 1.20e-14 | 73.2 |
MS.gene98966.t1 | MTR_8g023900 | 35.669 | 157 | 80 | 8 | 4 | 146 | 188 | 337 | 2.13e-14 | 72.4 |
MS.gene98966.t1 | MTR_4g094302 | 32.308 | 130 | 78 | 5 | 4 | 133 | 11 | 130 | 2.32e-14 | 68.9 |
MS.gene98966.t1 | MTR_2g093810 | 31.250 | 160 | 85 | 5 | 4 | 146 | 14 | 165 | 2.67e-14 | 71.6 |
MS.gene98966.t1 | MTR_7g100990 | 31.875 | 160 | 84 | 5 | 4 | 146 | 11 | 162 | 5.28e-14 | 70.9 |
MS.gene98966.t1 | MTR_4g036030 | 33.121 | 157 | 87 | 8 | 2 | 147 | 5 | 154 | 7.75e-14 | 70.5 |
MS.gene98966.t1 | MTR_4g089135 | 33.824 | 136 | 76 | 4 | 4 | 133 | 15 | 142 | 1.18e-13 | 69.7 |
MS.gene98966.t1 | MTR_1g096430 | 31.429 | 175 | 85 | 10 | 4 | 158 | 7 | 166 | 1.45e-13 | 69.7 |
MS.gene98966.t1 | MTR_6g011860 | 31.707 | 164 | 85 | 8 | 4 | 147 | 15 | 171 | 2.25e-13 | 69.3 |
MS.gene98966.t1 | MTR_8g023860 | 32.026 | 153 | 88 | 5 | 4 | 147 | 12 | 157 | 2.34e-13 | 69.3 |
MS.gene98966.t1 | MTR_4g081870 | 29.814 | 161 | 86 | 6 | 4 | 147 | 9 | 159 | 2.49e-13 | 68.2 |
MS.gene98966.t1 | MTR_2g079990 | 31.073 | 177 | 97 | 8 | 4 | 166 | 16 | 181 | 4.13e-13 | 68.2 |
MS.gene98966.t1 | MTR_4g075980 | 33.775 | 151 | 83 | 7 | 6 | 147 | 17 | 159 | 5.88e-13 | 67.4 |
MS.gene98966.t1 | MTR_4g101680 | 31.847 | 157 | 89 | 7 | 2 | 147 | 5 | 154 | 6.66e-13 | 67.8 |
MS.gene98966.t1 | MTR_3g109340 | 31.410 | 156 | 87 | 7 | 4 | 147 | 22 | 169 | 8.73e-13 | 67.4 |
MS.gene98966.t1 | MTR_7g097090 | 32.692 | 156 | 86 | 8 | 2 | 147 | 8 | 154 | 1.25e-12 | 66.6 |
MS.gene98966.t1 | MTR_3g109340 | 30.968 | 155 | 88 | 7 | 4 | 147 | 22 | 168 | 2.31e-12 | 66.2 |
MS.gene98966.t1 | MTR_2g068920 | 33.824 | 136 | 75 | 6 | 6 | 133 | 23 | 151 | 4.97e-12 | 64.7 |
MS.gene98966.t1 | MTR_5g012080 | 30.818 | 159 | 90 | 8 | 2 | 147 | 5 | 156 | 5.62e-12 | 65.1 |
MS.gene98966.t1 | MTR_2157s0010 | 29.412 | 170 | 83 | 9 | 4 | 147 | 8 | 166 | 7.38e-12 | 63.9 |
MS.gene98966.t1 | MTR_2g079990 | 33.813 | 139 | 74 | 6 | 4 | 135 | 16 | 143 | 1.15e-11 | 64.3 |
MS.gene98966.t1 | MTR_6g012670 | 28.235 | 170 | 94 | 8 | 4 | 155 | 20 | 179 | 3.54e-11 | 62.4 |
MS.gene98966.t1 | MTR_7g085220 | 27.381 | 168 | 90 | 6 | 4 | 147 | 8 | 167 | 3.63e-11 | 62.8 |
MS.gene98966.t1 | MTR_8g099750 | 33.094 | 139 | 81 | 5 | 1 | 135 | 11 | 141 | 4.65e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98966.t1 | AT3G49530 | 32.812 | 192 | 108 | 8 | 1 | 179 | 10 | 193 | 3.20e-20 | 89.0 |
MS.gene98966.t1 | AT3G49530 | 32.812 | 192 | 108 | 8 | 1 | 179 | 10 | 193 | 3.24e-20 | 89.4 |
MS.gene98966.t1 | AT3G10490 | 36.047 | 172 | 88 | 7 | 4 | 159 | 27 | 192 | 2.71e-18 | 81.6 |
MS.gene98966.t1 | AT5G24590 | 36.250 | 160 | 82 | 7 | 1 | 147 | 10 | 162 | 5.55e-18 | 82.8 |
MS.gene98966.t1 | AT1G33060 | 35.152 | 165 | 82 | 7 | 1 | 150 | 21 | 175 | 8.62e-18 | 82.8 |
MS.gene98966.t1 | AT1G33060 | 35.152 | 165 | 82 | 7 | 1 | 150 | 21 | 175 | 8.88e-18 | 82.8 |
MS.gene98966.t1 | AT4G17980 | 35.849 | 159 | 83 | 7 | 2 | 146 | 4 | 157 | 1.29e-17 | 80.1 |
MS.gene98966.t1 | AT5G04410 | 34.839 | 155 | 84 | 5 | 4 | 147 | 9 | 157 | 1.42e-17 | 82.0 |
MS.gene98966.t1 | AT5G64530 | 37.121 | 132 | 69 | 4 | 4 | 135 | 3 | 120 | 2.02e-17 | 77.4 |
MS.gene98966.t1 | AT4G17980 | 35.849 | 159 | 83 | 7 | 2 | 146 | 4 | 157 | 2.43e-17 | 79.7 |
MS.gene98966.t1 | AT3G17730 | 33.544 | 158 | 82 | 8 | 4 | 147 | 6 | 154 | 3.08e-17 | 79.0 |
MS.gene98966.t1 | AT5G64530 | 37.879 | 132 | 68 | 5 | 4 | 135 | 3 | 120 | 3.87e-17 | 77.4 |
MS.gene98966.t1 | AT1G69490 | 31.288 | 163 | 85 | 6 | 2 | 147 | 7 | 159 | 4.16e-17 | 79.0 |
MS.gene98966.t1 | AT5G08790 | 31.604 | 212 | 110 | 9 | 4 | 192 | 7 | 206 | 5.42e-17 | 78.6 |
MS.gene98966.t1 | AT3G10490 | 36.047 | 172 | 88 | 7 | 4 | 159 | 27 | 192 | 6.60e-17 | 79.7 |
MS.gene98966.t1 | AT3G10480 | 34.225 | 187 | 94 | 9 | 4 | 172 | 27 | 202 | 8.87e-17 | 79.3 |
MS.gene98966.t1 | AT4G35580 | 34.568 | 162 | 87 | 8 | 1 | 150 | 6 | 160 | 1.60e-16 | 79.0 |
MS.gene98966.t1 | AT4G35580 | 34.568 | 162 | 87 | 8 | 1 | 150 | 6 | 160 | 1.61e-16 | 79.0 |
MS.gene98966.t1 | AT5G46590 | 34.177 | 158 | 85 | 6 | 2 | 146 | 4 | 155 | 1.73e-16 | 77.4 |
MS.gene98966.t1 | AT4G35580 | 34.568 | 162 | 87 | 8 | 1 | 150 | 6 | 160 | 1.80e-16 | 78.6 |
MS.gene98966.t1 | AT2G27300 | 32.667 | 150 | 90 | 6 | 1 | 146 | 11 | 153 | 2.25e-16 | 77.8 |
MS.gene98966.t1 | AT3G10480 | 34.409 | 186 | 94 | 10 | 4 | 172 | 27 | 201 | 2.34e-16 | 78.2 |
MS.gene98966.t1 | AT2G43000 | 34.615 | 156 | 78 | 8 | 6 | 147 | 20 | 165 | 5.86e-16 | 75.9 |
MS.gene98966.t1 | AT1G26870 | 34.659 | 176 | 87 | 8 | 3 | 157 | 15 | 183 | 8.13e-16 | 76.6 |
MS.gene98966.t1 | AT1G32510 | 33.333 | 162 | 87 | 6 | 2 | 146 | 4 | 161 | 8.67e-16 | 75.5 |
MS.gene98966.t1 | AT1G54330 | 36.184 | 152 | 83 | 6 | 4 | 147 | 6 | 151 | 1.26e-15 | 75.1 |
MS.gene98966.t1 | AT3G10500 | 34.177 | 158 | 87 | 6 | 1 | 147 | 6 | 157 | 1.57e-15 | 75.9 |
MS.gene98966.t1 | AT3G44290 | 31.724 | 145 | 88 | 6 | 6 | 146 | 16 | 153 | 2.30e-15 | 73.2 |
MS.gene98966.t1 | AT5G22290 | 33.562 | 146 | 85 | 7 | 6 | 146 | 23 | 161 | 3.98e-15 | 73.9 |
MS.gene98966.t1 | AT2G24430 | 32.692 | 156 | 85 | 7 | 4 | 147 | 16 | 163 | 9.20e-15 | 72.8 |
MS.gene98966.t1 | AT2G24430 | 32.692 | 156 | 85 | 7 | 4 | 147 | 16 | 163 | 9.20e-15 | 72.8 |
MS.gene98966.t1 | AT5G46590 | 34.286 | 140 | 81 | 5 | 2 | 136 | 4 | 137 | 9.61e-15 | 72.4 |
MS.gene98966.t1 | AT3G44290 | 31.724 | 145 | 88 | 6 | 6 | 146 | 16 | 153 | 1.04e-14 | 72.8 |
MS.gene98966.t1 | AT5G63790 | 31.953 | 169 | 86 | 7 | 4 | 154 | 50 | 207 | 1.38e-14 | 72.4 |
MS.gene98966.t1 | AT5G63790 | 31.953 | 169 | 86 | 7 | 4 | 154 | 60 | 217 | 1.60e-14 | 72.4 |
MS.gene98966.t1 | AT4G27410 | 32.911 | 158 | 81 | 8 | 4 | 147 | 14 | 160 | 2.42e-14 | 71.6 |
MS.gene98966.t1 | AT4G01550 | 33.108 | 148 | 89 | 5 | 7 | 147 | 7 | 151 | 3.96e-14 | 71.6 |
MS.gene98966.t1 | AT2G33480 | 34.194 | 155 | 78 | 7 | 4 | 147 | 15 | 156 | 1.25e-13 | 68.9 |
MS.gene98966.t1 | AT1G32870 | 37.226 | 137 | 74 | 6 | 4 | 136 | 10 | 138 | 1.97e-13 | 69.7 |
MS.gene98966.t1 | AT1G32870 | 37.226 | 137 | 74 | 6 | 4 | 136 | 10 | 138 | 2.07e-13 | 69.7 |
MS.gene98966.t1 | AT2G33480 | 33.758 | 157 | 78 | 7 | 4 | 147 | 15 | 158 | 2.27e-13 | 68.6 |
MS.gene98966.t1 | AT5G39610 | 30.818 | 159 | 85 | 7 | 4 | 147 | 20 | 168 | 2.40e-13 | 68.6 |
MS.gene98966.t1 | AT4G27410 | 32.164 | 171 | 82 | 9 | 4 | 147 | 14 | 177 | 2.48e-13 | 68.9 |
MS.gene98966.t1 | AT5G09330 | 31.214 | 173 | 99 | 7 | 2 | 161 | 4 | 169 | 2.48e-13 | 69.3 |
MS.gene98966.t1 | AT5G09330 | 31.214 | 173 | 99 | 7 | 2 | 161 | 4 | 169 | 2.48e-13 | 69.3 |
MS.gene98966.t1 | AT5G09330 | 31.214 | 173 | 99 | 7 | 2 | 161 | 4 | 169 | 2.48e-13 | 69.3 |
MS.gene98966.t1 | AT5G09330 | 31.214 | 173 | 99 | 7 | 2 | 161 | 4 | 169 | 2.48e-13 | 69.3 |
MS.gene98966.t1 | AT5G09330 | 31.214 | 173 | 99 | 7 | 2 | 161 | 4 | 169 | 2.48e-13 | 69.3 |
MS.gene98966.t1 | AT1G32870 | 37.226 | 137 | 74 | 6 | 4 | 136 | 46 | 174 | 2.53e-13 | 69.3 |
MS.gene98966.t1 | AT4G10350 | 32.298 | 161 | 81 | 8 | 4 | 147 | 9 | 158 | 3.30e-13 | 68.6 |
MS.gene98966.t1 | AT3G29035 | 33.088 | 136 | 75 | 6 | 4 | 133 | 24 | 149 | 6.19e-13 | 67.8 |
MS.gene98966.t1 | AT5G66300 | 30.061 | 163 | 81 | 8 | 4 | 147 | 12 | 160 | 1.00e-12 | 67.0 |
MS.gene98966.t1 | AT3G04070 | 30.178 | 169 | 87 | 7 | 2 | 147 | 8 | 168 | 1.29e-12 | 67.0 |
MS.gene98966.t1 | AT5G13180 | 32.468 | 154 | 85 | 6 | 4 | 147 | 14 | 158 | 1.32e-12 | 65.9 |
MS.gene98966.t1 | AT3G15500 | 31.847 | 157 | 84 | 7 | 4 | 147 | 14 | 160 | 1.89e-12 | 66.2 |
MS.gene98966.t1 | AT3G04070 | 32.168 | 143 | 80 | 5 | 2 | 135 | 8 | 142 | 2.89e-12 | 65.9 |
MS.gene98966.t1 | AT1G34190 | 31.613 | 155 | 85 | 6 | 6 | 147 | 18 | 164 | 3.76e-12 | 65.9 |
MS.gene98966.t1 | AT1G76420 | 29.375 | 160 | 87 | 6 | 4 | 148 | 22 | 170 | 6.50e-12 | 64.7 |
MS.gene98966.t1 | AT1G61110 | 32.609 | 138 | 78 | 5 | 4 | 135 | 16 | 144 | 8.52e-12 | 64.3 |
MS.gene98966.t1 | AT5G61430 | 29.560 | 159 | 87 | 6 | 4 | 147 | 16 | 164 | 1.91e-11 | 63.5 |
MS.gene98966.t1 | AT5G07680 | 30.189 | 159 | 86 | 6 | 4 | 147 | 17 | 165 | 3.74e-11 | 62.4 |
MS.gene98966.t1 | AT5G07680 | 30.818 | 159 | 85 | 7 | 4 | 147 | 3 | 151 | 4.84e-11 | 62.0 |
Find 65 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAACTTAAGCTTGCAATTA+TGG | 0.155599 | 1.4:-16844461 | MS.gene98966:CDS |
TGATGTCACTCGAAAATTTA+AGG | 0.155764 | 1.4:-16852118 | MS.gene98966:CDS |
GGCACTGCAGGACTGGATTT+TGG | 0.193421 | 1.4:-16852523 | MS.gene98966:CDS |
GCCATGCTTCCACCTGGTGC+TGG | 0.288291 | 1.4:-16852755 | MS.gene98966:CDS |
CCATGGTTCTGACCTCATTA+AGG | 0.288790 | 1.4:-16852660 | MS.gene98966:CDS |
TCCCTCTTTATGTTCTATCT+TGG | 0.300819 | 1.4:-16852437 | MS.gene98966:CDS |
CTGGTAGTAGTGATGGTGGT+GGG | 0.303392 | 1.4:-16852086 | MS.gene98966:CDS |
TGGAGCTGACAATGTGGTTT+TGG | 0.312073 | 1.4:-16852468 | MS.gene98966:CDS |
ATGGATCTGGGTGCAGAGTT+TGG | 0.323843 | 1.4:-16852186 | MS.gene98966:CDS |
ACTATACCATCGACAATTGT+AGG | 0.365984 | 1.4:-16852586 | MS.gene98966:CDS |
CCATGCTTCCACCTGGTGCT+GGG | 0.413477 | 1.4:-16852754 | MS.gene98966:CDS |
TTGCCCTCCAACAATGGATC+TGG | 0.416934 | 1.4:-16852199 | MS.gene98966:CDS |
GATGTCACTCGAAAATTTAA+GGG | 0.421822 | 1.4:-16852117 | MS.gene98966:CDS |
GTATAGTAGAAGGAGGTATA+CGG | 0.424556 | 1.4:+16852602 | None:intergenic |
GAGAGACGGCACTGCAGGAC+TGG | 0.427179 | 1.4:-16852530 | MS.gene98966:CDS |
GCTGGTAGTAGTGATGGTGG+TGG | 0.451886 | 1.4:-16852087 | MS.gene98966:CDS |
GCTGGGGCTGGTAGTAGTGA+TGG | 0.454213 | 1.4:-16852093 | MS.gene98966:CDS |
CCTACTGACGAGATACTTGT+TGG | 0.458463 | 1.4:-16852725 | MS.gene98966:CDS |
TCACATTTCACATATATTCA+AGG | 0.466258 | 1.4:-16852042 | MS.gene98966:CDS |
GCAATGGCCATGCTTCCACC+TGG | 0.468009 | 1.4:-16852761 | MS.gene98966:CDS |
TGCATTGGCTGACGAGCCTC+AGG | 0.469467 | 1.4:-16852366 | MS.gene98966:intron |
AAAACACGGCACAAAACAAA+AGG | 0.470485 | 1.4:+16852225 | None:intergenic |
TACTTGTTGGCTACTACCTT+AGG | 0.477557 | 1.4:-16852712 | MS.gene98966:CDS |
GGTGGTGGGGCTGCTGAGCA+AGG | 0.481889 | 1.4:-16852072 | MS.gene98966:CDS |
CGATCGGGTCATACTCATAC+AGG | 0.485419 | 1.4:+16852630 | None:intergenic |
TACTGCTTCACTGCCAAAGT+TGG | 0.486292 | 1.4:-16852557 | MS.gene98966:CDS |
GAGGTATACGGCAATTCGAT+CGG | 0.486752 | 1.4:+16852614 | None:intergenic |
CCGTCTCTCACTGCCAACTT+TGG | 0.487719 | 1.4:+16852544 | None:intergenic |
ATTGCAAGCTTAAGTTGCTC+TGG | 0.498542 | 1.4:+16844466 | None:intergenic |
TTCCAAGATAGAACATAAAG+AGG | 0.498797 | 1.4:+16852435 | None:intergenic |
AGGACGCTGTCAGAACAAAC+TGG | 0.499874 | 1.4:-16852403 | MS.gene98966:CDS |
TGGTAGTAGTGATGGTGGTG+GGG | 0.505536 | 1.4:-16852085 | MS.gene98966:CDS |
AGGTATACGGCAATTCGATC+GGG | 0.507489 | 1.4:+16852615 | None:intergenic |
GCAGTGAGAGACGGCACTGC+AGG | 0.521491 | 1.4:-16852535 | MS.gene98966:CDS |
ATTGTCGATGGTATAGTAGA+AGG | 0.525309 | 1.4:+16852592 | None:intergenic |
CCCAGCACCAGGTGGAAGCA+TGG | 0.526903 | 1.4:+16852754 | None:intergenic |
CCAACAAGTATCTCGTCAGT+AGG | 0.528725 | 1.4:+16852725 | None:intergenic |
ACCTTCTTCAACATCAGATA+AGG | 0.528743 | 1.4:+16852161 | None:intergenic |
GCACCCAGATCCATTGTTGG+AGG | 0.539944 | 1.4:+16852195 | None:intergenic |
GAACAGGTTCAGAATTTCCA+TGG | 0.547755 | 1.4:-16852677 | MS.gene98966:CDS |
TCTGCACCCAGATCCATTGT+TGG | 0.550003 | 1.4:+16852192 | None:intergenic |
CAACAAGTATCTCGTCAGTA+GGG | 0.551326 | 1.4:+16852726 | None:intergenic |
ATATATTCAAGGCTCCCTGC+AGG | 0.566277 | 1.4:-16852031 | MS.gene98966:intron |
GTAGGGAGAAACCCAGCACC+AGG | 0.574061 | 1.4:+16852743 | None:intergenic |
ACAGGTTCAGCTCCTTAATG+AGG | 0.577110 | 1.4:+16852648 | None:intergenic |
TGCCCTCCAACAATGGATCT+GGG | 0.577800 | 1.4:-16852198 | MS.gene98966:CDS |
CTATCTTGGAAATTCTGTGA+AGG | 0.589080 | 1.4:-16852423 | MS.gene98966:CDS |
ATTACTCGAGACATTAATGA+TGG | 0.591026 | 1.4:-16852488 | MS.gene98966:CDS |
CACCCAGATCCATTGTTGGA+GGG | 0.600445 | 1.4:+16852196 | None:intergenic |
GGGGCTGGTAGTAGTGATGG+TGG | 0.602818 | 1.4:-16852090 | MS.gene98966:CDS |
ACTTAAGCTTGCAATTATGG+AGG | 0.614360 | 1.4:-16844458 | MS.gene98966:CDS |
ATGTCACTCGAAAATTTAAG+GGG | 0.615370 | 1.4:-16852116 | MS.gene98966:CDS |
GTCGATGGTATAGTAGAAGG+AGG | 0.618515 | 1.4:+16852595 | None:intergenic |
GCCTTATCTGATGTTGAAGA+AGG | 0.619001 | 1.4:-16852162 | MS.gene98966:CDS |
TGATTGTGTTGTCTTCCACA+TGG | 0.623071 | 1.4:-16844500 | MS.gene98966:CDS |
CCAAAGTTGGCAGTGAGAGA+CGG | 0.623168 | 1.4:-16852544 | MS.gene98966:CDS |
TCCAAGATAGAACATAAAGA+GGG | 0.626576 | 1.4:+16852436 | None:intergenic |
CCTTAATGAGGTCAGAACCA+TGG | 0.626777 | 1.4:+16852660 | None:intergenic |
GTTGAAGAAGGTGATGCTGC+TGG | 0.630740 | 1.4:-16852150 | MS.gene98966:CDS |
GAATTGCCTACAATTGTCGA+TGG | 0.641834 | 1.4:+16852580 | None:intergenic |
GGGAGAAACCCAGCACCAGG+TGG | 0.653293 | 1.4:+16852746 | None:intergenic |
GATTATGTACGAGTATGCAT+TGG | 0.682043 | 1.4:-16852381 | MS.gene98966:CDS |
CTGGCGTCATAGCTTCCATG+TGG | 0.684588 | 1.4:+16844485 | None:intergenic |
TGTCACTCGAAAATTTAAGG+GGG | 0.730936 | 1.4:-16852115 | MS.gene98966:CDS |
TAATGATGGAGCTGACAATG+TGG | 0.745336 | 1.4:-16852474 | MS.gene98966:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 16844426 | 16852780 | 16844426 | ID=MS.gene98966 |
chr1.4 | mRNA | 16844426 | 16852780 | 16844426 | ID=MS.gene98966.t1;Parent=MS.gene98966 |
chr1.4 | exon | 16852367 | 16852780 | 16852367 | ID=MS.gene98966.t1.exon1;Parent=MS.gene98966.t1 |
chr1.4 | CDS | 16852367 | 16852780 | 16852367 | ID=cds.MS.gene98966.t1;Parent=MS.gene98966.t1 |
chr1.4 | exon | 16852032 | 16852250 | 16852032 | ID=MS.gene98966.t1.exon2;Parent=MS.gene98966.t1 |
chr1.4 | CDS | 16852032 | 16852250 | 16852032 | ID=cds.MS.gene98966.t1;Parent=MS.gene98966.t1 |
chr1.4 | exon | 16844426 | 16844542 | 16844426 | ID=MS.gene98966.t1.exon3;Parent=MS.gene98966.t1 |
chr1.4 | CDS | 16844426 | 16844542 | 16844426 | ID=cds.MS.gene98966.t1;Parent=MS.gene98966.t1 |
Gene Sequence |
Protein sequence |