Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99192.t1 | XP_004509147.1 | 74 | 477 | 106 | 6 | 1 | 460 | 4 | 479 | 4.10E-186 | 661 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99192.t1 | Q0JP99 | 33.7 | 386 | 221 | 6 | 87 | 460 | 133 | 495 | 1.3e-52 | 208.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99192.t1 | A0A1S2YSD0 | 74.0 | 477 | 106 | 6 | 1 | 460 | 4 | 479 | 2.9e-186 | 661.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene99192.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99192.t1 | MTR_2g102450 | 47.093 | 172 | 85 | 5 | 92 | 260 | 74 | 242 | 3.03e-37 | 140 |
| MS.gene99192.t1 | MTR_2g102450 | 47.093 | 172 | 85 | 5 | 92 | 260 | 128 | 296 | 7.91e-37 | 140 |
| MS.gene99192.t1 | MTR_3g101520 | 48.800 | 125 | 64 | 0 | 78 | 202 | 98 | 222 | 2.25e-36 | 134 |
| MS.gene99192.t1 | MTR_3g101520 | 48.800 | 125 | 64 | 0 | 78 | 202 | 106 | 230 | 4.12e-36 | 133 |
| MS.gene99192.t1 | MTR_4g008310 | 46.226 | 106 | 57 | 0 | 88 | 193 | 199 | 304 | 1.80e-25 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99192.t1 | AT3G19184 | 51.282 | 117 | 57 | 0 | 79 | 195 | 103 | 219 | 4.18e-35 | 132 |
| MS.gene99192.t1 | AT3G19184 | 51.282 | 117 | 57 | 0 | 79 | 195 | 103 | 219 | 4.57e-35 | 132 |
| MS.gene99192.t1 | AT5G42700 | 52.586 | 116 | 51 | 1 | 81 | 196 | 64 | 175 | 6.74e-33 | 123 |
| MS.gene99192.t1 | AT5G42700 | 52.586 | 116 | 51 | 1 | 81 | 196 | 109 | 220 | 9.96e-33 | 124 |
| MS.gene99192.t1 | AT5G58280 | 45.378 | 119 | 64 | 1 | 92 | 210 | 113 | 230 | 8.42e-26 | 106 |
| MS.gene99192.t1 | AT5G58280 | 45.378 | 119 | 64 | 1 | 92 | 210 | 146 | 263 | 1.57e-25 | 106 |
| MS.gene99192.t1 | AT5G58280 | 45.378 | 119 | 64 | 1 | 92 | 210 | 145 | 262 | 1.68e-25 | 106 |
Find 61 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGAACCCACCAAATTTA+AGG | 0.130382 | 8.4:-26668430 | MS.gene99192:intron |
| AGAAAGAAGTTGCTACTAAT+TGG | 0.229613 | 8.4:-26667401 | MS.gene99192:CDS |
| TTCACAAAACTAGGGAATTC+TGG | 0.261063 | 8.4:+26668844 | None:intergenic |
| TAAAAGACATTTACCTGATA+AGG | 0.319627 | 8.4:-26668595 | MS.gene99192:CDS |
| CCTTTCAACTCTTTAAATTC+AGG | 0.323706 | 8.4:+26667930 | None:intergenic |
| GTGATAGTTGTATCCTTATC+AGG | 0.331030 | 8.4:+26668582 | None:intergenic |
| CTCAGAGATTAGAAGATATA+TGG | 0.350074 | 8.4:-26667571 | MS.gene99192:CDS |
| ATTTGGTGGGTTCAATTAGT+TGG | 0.352601 | 8.4:+26668436 | None:intergenic |
| AATTTCAGAATCATAGTTGA+TGG | 0.381163 | 8.4:-26667900 | MS.gene99192:CDS |
| GTTAGCATAGCTTATGAAAC+TGG | 0.383960 | 8.4:-26667600 | MS.gene99192:CDS |
| GATTGCTCTGTATATTGTTT+AGG | 0.388560 | 8.4:+26668005 | None:intergenic |
| TTGATTGCAGTTCAACTAAA+GGG | 0.392484 | 8.4:-26668948 | MS.gene99192:intron |
| AACTATTACCTTAAATTTGG+TGG | 0.415378 | 8.4:+26668422 | None:intergenic |
| CGAAGGACTTCGATCACATT+TGG | 0.418810 | 8.4:-26668869 | MS.gene99192:CDS |
| ATCACATTAGAAGATGAATA+TGG | 0.425783 | 8.4:-26668564 | MS.gene99192:CDS |
| TTTGATTGCAGTTCAACTAA+AGG | 0.434875 | 8.4:-26668949 | MS.gene99192:intron |
| TTTGTGATTGTGTCTCATCT+AGG | 0.440432 | 8.4:+26669069 | None:intergenic |
| ACTGTGTTGTTCATTTCTAT+AGG | 0.440475 | 8.4:+26667548 | None:intergenic |
| CTTCATGACAATCTCATGAA+AGG | 0.455641 | 8.4:-26667801 | MS.gene99192:CDS |
| GTAGAGAGTTCTTCTTCGAT+TGG | 0.457108 | 8.4:+26667873 | None:intergenic |
| TTGCATTATAAGCTGATTGC+TGG | 0.457384 | 8.4:-26667777 | MS.gene99192:CDS |
| AACGAAGCTTGAAGAATTGA+AGG | 0.472041 | 8.4:-26667496 | MS.gene99192:CDS |
| CTATTACATGCTACAACATC+AGG | 0.475119 | 8.4:+26668110 | None:intergenic |
| TTGTGATTGTGTCTCATCTA+GGG | 0.479490 | 8.4:+26669070 | None:intergenic |
| CACAATCACAAAAGTTTGCA+AGG | 0.496554 | 8.4:-26669058 | MS.gene99192:intron |
| CCTGAATTTAAAGAGTTGAA+AGG | 0.513933 | 8.4:-26667930 | MS.gene99192:CDS |
| ACTATTACCTTAAATTTGGT+GGG | 0.516282 | 8.4:+26668423 | None:intergenic |
| TTTCCACGAAATGATGATCA+TGG | 0.525235 | 8.4:-26669991 | MS.gene99192:CDS |
| AGCAAGGACTTCACAAAACT+AGG | 0.525979 | 8.4:+26668835 | None:intergenic |
| AAATACATTGCATGTAAGAC+AGG | 0.526557 | 8.4:-26668525 | MS.gene99192:CDS |
| CAAATGTGATCGAAGTCCTT+CGG | 0.541447 | 8.4:+26668870 | None:intergenic |
| AGCTTTGTCAGAAATATTCG+AGG | 0.558647 | 8.4:-26667964 | MS.gene99192:CDS |
| ATTAATGTCGAAAATGGTGG+CGG | 0.572487 | 8.4:-26670061 | None:intergenic |
| GCAAGGACTTCACAAAACTA+GGG | 0.574234 | 8.4:+26668836 | None:intergenic |
| AGAGGATGAAATAAAGAACA+TGG | 0.576688 | 8.4:-26667520 | MS.gene99192:CDS |
| TCAGAATCATAGTTGATGGA+AGG | 0.576785 | 8.4:-26667896 | MS.gene99192:CDS |
| TCAACTAAAGGGGTAACAGA+TGG | 0.578200 | 8.4:-26668937 | MS.gene99192:CDS |
| GTATAAACAGAACAAGGCGG+TGG | 0.586932 | 8.4:-26669657 | MS.gene99192:CDS |
| TCTGCTGTGATTCACGCCGA+AGG | 0.597081 | 8.4:-26668886 | MS.gene99192:CDS |
| TGGCGGTTGATGAAAAGAAG+AGG | 0.598421 | 8.4:-26670044 | MS.gene99192:CDS |
| ACTCCATGATCATCATTTCG+TGG | 0.602909 | 8.4:+26669988 | None:intergenic |
| TGATTGCAGTTCAACTAAAG+GGG | 0.603233 | 8.4:-26668947 | MS.gene99192:intron |
| TGAAAAGAAGAGGGATCGAA+TGG | 0.606536 | 8.4:-26670034 | MS.gene99192:CDS |
| GAAAATGATTGTATCAAACA+TGG | 0.606925 | 8.4:-26668036 | MS.gene99192:CDS |
| GCTTTGTCAGAAATATTCGA+GGG | 0.608274 | 8.4:-26667963 | MS.gene99192:CDS |
| AGCTACATGTGATCTGAGCA+AGG | 0.622819 | 8.4:+26668819 | None:intergenic |
| GGCGGTTGATGAAAAGAAGA+GGG | 0.624988 | 8.4:-26670043 | MS.gene99192:CDS |
| TTAGGTTTATATAATAAGAG+CGG | 0.625618 | 8.4:-26668324 | MS.gene99192:intron |
| GCTGTGCATAAATTGCTAGA+AGG | 0.629013 | 8.4:-26668474 | MS.gene99192:CDS |
| AGACAGGATTGAGTGCTGGT+TGG | 0.629436 | 8.4:-26668509 | MS.gene99192:CDS |
| TGAACAACACAGTCGAGTAG+AGG | 0.629562 | 8.4:-26667538 | MS.gene99192:CDS |
| TGTAAGACAGGATTGAGTGC+TGG | 0.630499 | 8.4:-26668513 | MS.gene99192:CDS |
| TTTGCAGTATAAACAGAACA+AGG | 0.647255 | 8.4:-26669663 | MS.gene99192:intron |
| CATATATCTTCTAATCTCTG+AGG | 0.654771 | 8.4:+26667572 | None:intergenic |
| CAATTAGAAAATTCAACACG+CGG | 0.655244 | 8.4:+26667696 | None:intergenic |
| GAATTGAAGGAAGCTTGTAG+CGG | 0.658226 | 8.4:-26667483 | MS.gene99192:CDS |
| TGGAACATATTCTCGTGGCG+AGG | 0.659835 | 8.4:-26668917 | MS.gene99192:CDS |
| ACAGATGGAACATATTCTCG+TGG | 0.680750 | 8.4:-26668922 | MS.gene99192:CDS |
| TAAATTGCTAGAAGGTGATG+TGG | 0.696443 | 8.4:-26668466 | MS.gene99192:CDS |
| ATTGCTAGAAGGTGATGTGG+TGG | 0.703234 | 8.4:-26668463 | MS.gene99192:CDS |
| GCAGTATAAACAGAACAAGG+CGG | 0.787127 | 8.4:-26669660 | MS.gene99192:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATTGTCATTTTATT+AGG | + | chr8.4:26668743-26668762 | None:intergenic | 10.0% |
| !!! | TCTTTTATTAGTTTTAATTT+TGG | - | chr8.4:26669077-26669096 | MS.gene99192:CDS | 10.0% |
| !! | AAAAACTATTACCTTAAATT+TGG | + | chr8.4:26669030-26669049 | None:intergenic | 15.0% |
| !! | AAATTAAATCAAAGTCAAAA+TGG | - | chr8.4:26668318-26668337 | MS.gene99192:CDS | 15.0% |
| !! | AATACAACAAATTAAAAGTA+TGG | + | chr8.4:26669205-26669224 | None:intergenic | 15.0% |
| !! | ACATGTAAAAAAATGTAAAA+TGG | + | chr8.4:26668124-26668143 | None:intergenic | 15.0% |
| !! | AGAATTTAACATTCAATTAA+TGG | + | chr8.4:26668294-26668313 | None:intergenic | 15.0% |
| !! | GAATTTAACATTCAATTAAT+GGG | + | chr8.4:26668293-26668312 | None:intergenic | 15.0% |
| !! | TAAAAAAATGTAAAATGGAT+GGG | + | chr8.4:26668119-26668138 | None:intergenic | 15.0% |
| !! | TTAGTTATATTCAAATTTAG+AGG | + | chr8.4:26668701-26668720 | None:intergenic | 15.0% |
| !!! | ATTTTTATTGATAATGTTTC+TGG | - | chr8.4:26667686-26667705 | MS.gene99192:CDS | 15.0% |
| !!! | TACTTACTTTAAAAATAAGT+TGG | + | chr8.4:26668448-26668467 | None:intergenic | 15.0% |
| !!! | TTCTAATATTGAAAACATTT+TGG | - | chr8.4:26668157-26668176 | MS.gene99192:intron | 15.0% |
| !! | AAAAAAATGTAAAATGGATG+GGG | + | chr8.4:26668118-26668137 | None:intergenic | 20.0% |
| !! | AGATAGAAAACAACATTTAA+AGG | + | chr8.4:26667551-26667570 | None:intergenic | 20.0% |
| !! | ATAAAGAAAAATGTGTTTGA+TGG | - | chr8.4:26667650-26667669 | MS.gene99192:CDS | 20.0% |
| !! | GTAAAAAAATGTAAAATGGA+TGG | + | chr8.4:26668120-26668139 | None:intergenic | 20.0% |
| !! | TAAAGAAAAATGTGTTTGAT+GGG | - | chr8.4:26667651-26667670 | MS.gene99192:CDS | 20.0% |
| !! | TTAGGTTTATATAATAAGAG+CGG | - | chr8.4:26669122-26669141 | MS.gene99192:intron | 20.0% |
| !!! | AAAACAAGTAAGATTTTGAA+GGG | - | chr8.4:26667843-26667862 | MS.gene99192:CDS | 20.0% |
| !!! | ATGTTGAATTTTTAAGAGTT+CGG | - | chr8.4:26669811-26669830 | MS.gene99192:intron | 20.0% |
| !!! | CAATCATTTTCTTTTTCTTT+TGG | + | chr8.4:26669401-26669420 | None:intergenic | 20.0% |
| !!! | TTACTCATATCTTTTTTCTT+AGG | - | chr8.4:26669104-26669123 | MS.gene99192:intron | 20.0% |
| !!! | TTGTGATTTCTTTTTGTATA+GGG | - | chr8.4:26668810-26668829 | MS.gene99192:CDS | 20.0% |
| !!! | TTTTACATGTATTGAAACAT+TGG | - | chr8.4:26668134-26668153 | MS.gene99192:intron | 20.0% |
| ! | AAAAAATGTAAAATGGATGG+GGG | + | chr8.4:26668117-26668136 | None:intergenic | 25.0% |
| ! | AACCAAACAATTAGATGAAA+GGG | + | chr8.4:26668212-26668231 | None:intergenic | 25.0% |
| ! | AACTATTACCTTAAATTTGG+TGG | + | chr8.4:26669027-26669046 | None:intergenic | 25.0% |
| ! | AATTTCAGAATCATAGTTGA+TGG | - | chr8.4:26669546-26669565 | MS.gene99192:intron | 25.0% |
| ! | ACTATTACCTTAAATTTGGT+GGG | + | chr8.4:26669026-26669045 | None:intergenic | 25.0% |
| ! | ATCACATTAGAAGATGAATA+TGG | - | chr8.4:26668882-26668901 | MS.gene99192:CDS | 25.0% |
| ! | CATAGAAGGTTAAAATTATG+TGG | + | chr8.4:26668184-26668203 | None:intergenic | 25.0% |
| ! | GAAAATGATTGTATCAAACA+TGG | - | chr8.4:26669410-26669429 | MS.gene99192:intron | 25.0% |
| ! | TAAAAGACATTTACCTGATA+AGG | - | chr8.4:26668851-26668870 | MS.gene99192:CDS | 25.0% |
| ! | TAAAATGAAGCAACTGTATT+AGG | - | chr8.4:26668757-26668776 | MS.gene99192:intron | 25.0% |
| ! | TTACACTTTGTGAAAAAATG+AGG | + | chr8.4:26667589-26667608 | None:intergenic | 25.0% |
| !! | CAAAACAAGTAAGATTTTGA+AGG | - | chr8.4:26667842-26667861 | MS.gene99192:CDS | 25.0% |
| !! | CTTGTGATTTCTTTTTGTAT+AGG | - | chr8.4:26668809-26668828 | MS.gene99192:CDS | 25.0% |
| !! | TGTGATTTCTTTTTGTATAG+GGG | - | chr8.4:26668811-26668830 | MS.gene99192:CDS | 25.0% |
| !!! | CAAAATCTTACTTGTTTTGT+TGG | + | chr8.4:26667841-26667860 | None:intergenic | 25.0% |
| !!! | GTTTAACGCTTTTTCTTTTT+GGG | + | chr8.4:26669362-26669381 | None:intergenic | 25.0% |
| AAATACATTGCATGTAAGAC+AGG | - | chr8.4:26668921-26668940 | MS.gene99192:CDS | 30.0% | |
| AATGGTGAAAAAAGATGTGA+TGG | - | chr8.4:26667430-26667449 | MS.gene99192:CDS | 30.0% | |
| AATTGAACCCACCAAATTTA+AGG | - | chr8.4:26669016-26669035 | MS.gene99192:intron | 30.0% | |
| ACAACATTTAAAGGAGACTT+TGG | + | chr8.4:26667542-26667561 | None:intergenic | 30.0% | |
| AGAAAGAAGTTGCTACTAAT+TGG | - | chr8.4:26670045-26670064 | MS.gene99192:CDS | 30.0% | |
| AGAGGATGAAATAAAGAACA+TGG | - | chr8.4:26669926-26669945 | MS.gene99192:intron | 30.0% | |
| CAAAAAGAAATCACAAGACA+TGG | + | chr8.4:26668806-26668825 | None:intergenic | 30.0% | |
| CAACCAAACAATTAGATGAA+AGG | + | chr8.4:26668213-26668232 | None:intergenic | 30.0% | |
| CAATTAGAAAATTCAACACG+CGG | + | chr8.4:26669753-26669772 | None:intergenic | 30.0% | |
| CATATATCTTCTAATCTCTG+AGG | + | chr8.4:26669877-26669896 | None:intergenic | 30.0% | |
| CCTGAATTTAAAGAGTTGAA+AGG | - | chr8.4:26669516-26669535 | MS.gene99192:intron | 30.0% | |
| CCTTTCAACTCTTTAAATTC+AGG | + | chr8.4:26669519-26669538 | None:intergenic | 30.0% | |
| CTCAGAGATTAGAAGATATA+TGG | - | chr8.4:26669875-26669894 | MS.gene99192:intron | 30.0% | |
| GATTGCTCTGTATATTGTTT+AGG | + | chr8.4:26669444-26669463 | None:intergenic | 30.0% | |
| TACTAAACAATGTATCACAG+AGG | - | chr8.4:26668001-26668020 | MS.gene99192:CDS | 30.0% | |
| TCAATCCAGATTGTGAATAA+CGG | - | chr8.4:26667909-26667928 | MS.gene99192:CDS | 30.0% | |
| TTGATTGCAGTTCAACTAAA+GGG | - | chr8.4:26668498-26668517 | MS.gene99192:CDS | 30.0% | |
| TTTGATTGCAGTTCAACTAA+AGG | - | chr8.4:26668497-26668516 | MS.gene99192:CDS | 30.0% | |
| TTTGCAGTATAAACAGAACA+AGG | - | chr8.4:26667783-26667802 | MS.gene99192:CDS | 30.0% | |
| ! | ACTGTGTTGTTCATTTCTAT+AGG | + | chr8.4:26669901-26669920 | None:intergenic | 30.0% |
| ! | AGGCTTGTTTAAATCTCAAT+GGG | - | chr8.4:26667932-26667951 | MS.gene99192:CDS | 30.0% |
| ! | CTAACATATGCATTTTCTAC+AGG | - | chr8.4:26668350-26668369 | MS.gene99192:intron | 30.0% |
| ! | GCGTGTTGAATTTTCTAATT+GGG | - | chr8.4:26669752-26669771 | MS.gene99192:intron | 30.0% |
| ! | TTTTTCTTTTGGATGTCTTG+TGG | + | chr8.4:26669390-26669409 | None:intergenic | 30.0% |
| !! | TTAAATCTCAATGGGTTACT+CGG | - | chr8.4:26667940-26667959 | MS.gene99192:CDS | 30.0% |
| !!! | ATTGCTAGCTTTTGAACATT+TGG | - | chr8.4:26669782-26669801 | MS.gene99192:intron | 30.0% |
| !!! | GGTTTAACGCTTTTTCTTTT+TGG | + | chr8.4:26669363-26669382 | None:intergenic | 30.0% |
| !!! | TTGCTAGCTTTTGAACATTT+GGG | - | chr8.4:26669783-26669802 | MS.gene99192:intron | 30.0% |
| AACGAAGCTTGAAGAATTGA+AGG | - | chr8.4:26669950-26669969 | MS.gene99192:intron | 35.0% | |
| AGTTGCACCAAACAAAAAGT+GGG | - | chr8.4:26669162-26669181 | MS.gene99192:intron | 35.0% | |
| ATCACAAAAGTTTGCAAGGT+TGG | - | chr8.4:26668392-26668411 | MS.gene99192:intron | 35.0% | |
| CAAAAAGAAGCCAAACCTAT+AGG | + | chr8.4:26667721-26667740 | None:intergenic | 35.0% | |
| CACAATCACAAAAGTTTGCA+AGG | - | chr8.4:26668388-26668407 | MS.gene99192:intron | 35.0% | |
| CACCCTTTCATCTAATTGTT+TGG | - | chr8.4:26668207-26668226 | MS.gene99192:intron | 35.0% | |
| CTATTACATGCTACAACATC+AGG | + | chr8.4:26669339-26669358 | None:intergenic | 35.0% | |
| CTTCATGACAATCTCATGAA+AGG | - | chr8.4:26669645-26669664 | MS.gene99192:CDS | 35.0% | |
| GCTTTGTCAGAAATATTCGA+GGG | - | chr8.4:26669483-26669502 | MS.gene99192:intron | 35.0% | |
| GTGATAGTTGTATCCTTATC+AGG | + | chr8.4:26668867-26668886 | None:intergenic | 35.0% | |
| GTTAGCATAGCTTATGAAAC+TGG | - | chr8.4:26669846-26669865 | MS.gene99192:intron | 35.0% | |
| GTTTCTTCCTGAAAACATGA+AGG | + | chr8.4:26669307-26669326 | None:intergenic | 35.0% | |
| TAAATTGCTAGAAGGTGATG+TGG | - | chr8.4:26668980-26668999 | MS.gene99192:intron | 35.0% | |
| TGATTGCAGTTCAACTAAAG+GGG | - | chr8.4:26668499-26668518 | MS.gene99192:CDS | 35.0% | |
| TGTCTATCATGACATCATCA+AGG | - | chr8.4:26669227-26669246 | MS.gene99192:intron | 35.0% | |
| TTCACAAAACTAGGGAATTC+TGG | + | chr8.4:26668605-26668624 | None:intergenic | 35.0% | |
| TTGCATTATAAGCTGATTGC+TGG | - | chr8.4:26669669-26669688 | MS.gene99192:intron | 35.0% | |
| TTGTGATTGTGTCTCATCTA+GGG | + | chr8.4:26668379-26668398 | None:intergenic | 35.0% | |
| TTTCCACGAAATGATGATCA+TGG | - | chr8.4:26667455-26667474 | MS.gene99192:CDS | 35.0% | |
| TTTGGAGAGAAATGTGTCAT+AGG | + | chr8.4:26667524-26667543 | None:intergenic | 35.0% | |
| TTTGTGATTGTGTCTCATCT+AGG | + | chr8.4:26668380-26668399 | None:intergenic | 35.0% | |
| ! | AGCTTTGTCAGAAATATTCG+AGG | - | chr8.4:26669482-26669501 | MS.gene99192:intron | 35.0% |
| ! | CGCGTGTTGAATTTTCTAAT+TGG | - | chr8.4:26669751-26669770 | MS.gene99192:intron | 35.0% |
| ! | CTTTTCTCCTTCATGTTTTC+AGG | - | chr8.4:26669297-26669316 | MS.gene99192:intron | 35.0% |
| ! | GAGGCTTGTTTAAATCTCAA+TGG | - | chr8.4:26667931-26667950 | MS.gene99192:CDS | 35.0% |
| ! | GAGTGACTGTTGCATTTTAT+GGG | - | chr8.4:26667477-26667496 | MS.gene99192:CDS | 35.0% |
| ! | GCTTTAGATTCCTATAGGTT+TGG | - | chr8.4:26667708-26667727 | MS.gene99192:CDS | 35.0% |
| ! | TAAGCTTGTAAAGCACTACA+AGG | + | chr8.4:26668268-26668287 | None:intergenic | 35.0% |
| ! | TGTCTTTTACAAAACGACAC+AGG | + | chr8.4:26668840-26668859 | None:intergenic | 35.0% |
| !! | ATGAAAGGGTGTTTCATAGA+AGG | + | chr8.4:26668198-26668217 | None:intergenic | 35.0% |
| !! | ATTTGGTGGGTTCAATTAGT+TGG | + | chr8.4:26669013-26669032 | None:intergenic | 35.0% |
| !! | CACATGTAGCTAGTTGTTTT+TGG | - | chr8.4:26668639-26668658 | MS.gene99192:intron | 35.0% |
| !! | CTATAGGTTTGGCTTCTTTT+TGG | - | chr8.4:26667719-26667738 | MS.gene99192:CDS | 35.0% |
| !! | TCAGAATCATAGTTGATGGA+AGG | - | chr8.4:26669550-26669569 | MS.gene99192:intron | 35.0% |
| !! | TTCTGGCTTTAGATTCCTAT+AGG | - | chr8.4:26667703-26667722 | MS.gene99192:CDS | 35.0% |
| !!! | TGTAGCTAGTTGTTTTTGGA+TGG | - | chr8.4:26668643-26668662 | MS.gene99192:intron | 35.0% |
| AAATGTAAAATGGATGGGGG+TGG | + | chr8.4:26668114-26668133 | None:intergenic | 40.0% | |
| AATGTAAAATGGATGGGGGT+GGG | + | chr8.4:26668113-26668132 | None:intergenic | 40.0% | |
| ACAGATGGAACATATTCTCG+TGG | - | chr8.4:26668524-26668543 | MS.gene99192:CDS | 40.0% | |
| ACTCCATGATCATCATTTCG+TGG | + | chr8.4:26667461-26667480 | None:intergenic | 40.0% | |
| AGCAAGGACTTCACAAAACT+AGG | + | chr8.4:26668614-26668633 | None:intergenic | 40.0% | |
| ATCCAGATTGTGAATAACGG+AGG | - | chr8.4:26667912-26667931 | MS.gene99192:CDS | 40.0% | |
| CAAATGTGATCGAAGTCCTT+CGG | + | chr8.4:26668579-26668598 | None:intergenic | 40.0% | |
| CAACCAGTGTTGTCAACTAT+CGG | + | chr8.4:26668078-26668097 | None:intergenic | 40.0% | |
| CAAGACATGGCGATGTTATT+TGG | + | chr8.4:26668793-26668812 | None:intergenic | 40.0% | |
| GAATTGAAGGAAGCTTGTAG+CGG | - | chr8.4:26669963-26669982 | MS.gene99192:CDS | 40.0% | |
| GAGTTGCACCAAACAAAAAG+TGG | - | chr8.4:26669161-26669180 | MS.gene99192:intron | 40.0% | |
| GCAAGGACTTCACAAAACTA+GGG | + | chr8.4:26668613-26668632 | None:intergenic | 40.0% | |
| GCAGTATAAACAGAACAAGG+CGG | - | chr8.4:26667786-26667805 | MS.gene99192:CDS | 40.0% | |
| GCTGTGCATAAATTGCTAGA+AGG | - | chr8.4:26668972-26668991 | MS.gene99192:intron | 40.0% | |
| GTAGAGAGTTCTTCTTCGAT+TGG | + | chr8.4:26669576-26669595 | None:intergenic | 40.0% | |
| TCAACTAAAGGGGTAACAGA+TGG | - | chr8.4:26668509-26668528 | MS.gene99192:CDS | 40.0% | |
| TGAAAAGAAGAGGGATCGAA+TGG | - | chr8.4:26667412-26667431 | MS.gene99192:CDS | 40.0% | |
| ! | GGAGTGACTGTTGCATTTTA+TGG | - | chr8.4:26667476-26667495 | MS.gene99192:CDS | 40.0% |
| ! | TGTTGCATTTTATGGGAGAG+AGG | - | chr8.4:26667484-26667503 | MS.gene99192:CDS | 40.0% |
| ! | TTTTGGATGTCTTGTGGAAC+AGG | + | chr8.4:26669384-26669403 | None:intergenic | 40.0% |
| AGCCTCCGTTATTCACAATC+TGG | + | chr8.4:26667917-26667936 | None:intergenic | 45.0% | |
| AGCTACATGTGATCTGAGCA+AGG | + | chr8.4:26668630-26668649 | None:intergenic | 45.0% | |
| ATTGCTAGAAGGTGATGTGG+TGG | - | chr8.4:26668983-26669002 | MS.gene99192:intron | 45.0% | |
| CGAAGGACTTCGATCACATT+TGG | - | chr8.4:26668577-26668596 | MS.gene99192:CDS | 45.0% | |
| GTATAAACAGAACAAGGCGG+TGG | - | chr8.4:26667789-26667808 | MS.gene99192:CDS | 45.0% | |
| TAGCCGATAGTTGACAACAC+TGG | - | chr8.4:26668072-26668091 | MS.gene99192:CDS | 45.0% | |
| TGAACAACACAGTCGAGTAG+AGG | - | chr8.4:26669908-26669927 | MS.gene99192:intron | 45.0% | |
| TGCACCAAACAAAAAGTGGG+AGG | - | chr8.4:26669165-26669184 | MS.gene99192:intron | 45.0% | |
| TGTAAGACAGGATTGAGTGC+TGG | - | chr8.4:26668933-26668952 | MS.gene99192:CDS | 45.0% | |
| ! | GCTTGTAAAGCACTACAAGG+TGG | + | chr8.4:26668265-26668284 | None:intergenic | 45.0% |
| ! | TATGGGAGAGAGGTGTATGA+GGG | - | chr8.4:26667494-26667513 | MS.gene99192:CDS | 45.0% |
| ! | TTATGGGAGAGAGGTGTATG+AGG | - | chr8.4:26667493-26667512 | MS.gene99192:CDS | 45.0% |
| !! | GGCGGTTGATGAAAAGAAGA+GGG | - | chr8.4:26667403-26667422 | MS.gene99192:CDS | 45.0% |
| !! | TGGCGGTTGATGAAAAGAAG+AGG | - | chr8.4:26667402-26667421 | MS.gene99192:CDS | 45.0% |
| !! | TTTTAAGAGTTCGGTTGCGC+AGG | - | chr8.4:26669820-26669839 | MS.gene99192:intron | 45.0% |
| !!! | CTTGCCTCCCACTTTTTGTT+TGG | + | chr8.4:26669172-26669191 | None:intergenic | 45.0% |
| TGGAACATATTCTCGTGGCG+AGG | - | chr8.4:26668529-26668548 | MS.gene99192:CDS | 50.0% | |
| !! | AGACAGGATTGAGTGCTGGT+TGG | - | chr8.4:26668937-26668956 | MS.gene99192:CDS | 50.0% |
| TCTGCTGTGATTCACGCCGA+AGG | - | chr8.4:26668560-26668579 | MS.gene99192:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 26667398 | 26670070 | 26667398 | ID=MS.gene99192 |
| chr8.4 | mRNA | 26667398 | 26670070 | 26667398 | ID=MS.gene99192.t1;Parent=MS.gene99192 |
| chr8.4 | exon | 26669963 | 26670070 | 26669963 | ID=MS.gene99192.t1.exon1;Parent=MS.gene99192.t1 |
| chr8.4 | CDS | 26669963 | 26670070 | 26669963 | ID=cds.MS.gene99192.t1;Parent=MS.gene99192.t1 |
| chr8.4 | exon | 26669619 | 26669678 | 26669619 | ID=MS.gene99192.t1.exon2;Parent=MS.gene99192.t1 |
| chr8.4 | CDS | 26669619 | 26669678 | 26669619 | ID=cds.MS.gene99192.t1;Parent=MS.gene99192.t1 |
| chr8.4 | exon | 26669059 | 26669096 | 26669059 | ID=MS.gene99192.t1.exon3;Parent=MS.gene99192.t1 |
| chr8.4 | CDS | 26669059 | 26669096 | 26669059 | ID=cds.MS.gene99192.t1;Parent=MS.gene99192.t1 |
| chr8.4 | exon | 26668804 | 26668960 | 26668804 | ID=MS.gene99192.t1.exon4;Parent=MS.gene99192.t1 |
| chr8.4 | CDS | 26668804 | 26668960 | 26668804 | ID=cds.MS.gene99192.t1;Parent=MS.gene99192.t1 |
| chr8.4 | exon | 26668431 | 26668637 | 26668431 | ID=MS.gene99192.t1.exon5;Parent=MS.gene99192.t1 |
| chr8.4 | CDS | 26668431 | 26668637 | 26668431 | ID=cds.MS.gene99192.t1;Parent=MS.gene99192.t1 |
| chr8.4 | exon | 26668282 | 26668342 | 26668282 | ID=MS.gene99192.t1.exon6;Parent=MS.gene99192.t1 |
| chr8.4 | CDS | 26668282 | 26668342 | 26668282 | ID=cds.MS.gene99192.t1;Parent=MS.gene99192.t1 |
| chr8.4 | exon | 26667398 | 26668149 | 26667398 | ID=MS.gene99192.t1.exon7;Parent=MS.gene99192.t1 |
| chr8.4 | CDS | 26667398 | 26668149 | 26667398 | ID=cds.MS.gene99192.t1;Parent=MS.gene99192.t1 |
| Gene Sequence |
| Protein sequence |
