AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99362

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99362.t1 MTR_5g088230 97.942 243 5 0 1 243 1 243 5.22e-175 482
MS.gene99362.t1 MTR_5g088230 97.899 238 5 0 6 243 1 238 4.81e-171 472
MS.gene99362.t1 MTR_8g043960 45.172 290 109 7 1 243 1 287 8.90e-60 191
MS.gene99362.t1 MTR_3g010660 39.735 302 117 7 1 243 1 296 4.26e-57 184
MS.gene99362.t1 MTR_6g026800 37.838 296 123 8 6 242 1 294 7.85e-34 124
MS.gene99362.t1 MTR_7g088090 43.056 144 63 5 6 140 1 134 8.63e-24 97.8
MS.gene99362.t1 MTR_7g088090 47.619 105 48 3 138 241 194 292 2.09e-15 74.7
MS.gene99362.t1 MTR_3g101780 47.541 122 54 4 22 140 27 141 4.44e-23 97.1
MS.gene99362.t1 MTR_3g101780 42.478 113 61 3 135 243 285 397 3.14e-12 65.9
MS.gene99362.t1 MTR_2g086390 31.174 247 136 8 25 241 11 253 1.04e-21 91.7
MS.gene99362.t1 MTR_2g086390 31.174 247 136 8 25 241 11 253 1.31e-21 91.3
MS.gene99362.t1 MTR_4g085910 40.945 127 60 4 22 140 18 137 2.77e-20 89.0
MS.gene99362.t1 MTR_2g086340 28.819 288 154 8 1 241 1 284 2.16e-16 77.4
MS.gene99362.t1 MTR_7g104480 36.154 130 65 2 29 140 46 175 4.89e-15 73.9
MS.gene99362.t1 MTR_1g098590 36.957 184 81 7 87 243 32 207 5.85e-13 66.2
MS.gene99362.t1 MTR_1g098590 36.957 184 81 7 87 243 32 207 8.90e-13 66.2
MS.gene99362.t1 MTR_1g098590 36.082 194 89 7 76 243 23 207 1.10e-12 65.9
MS.gene99362.t1 MTR_4g094390 38.462 117 51 3 129 243 78 175 3.37e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99362.t1 AT3G56850 42.636 258 110 9 22 243 16 271 2.09e-46 156
MS.gene99362.t1 AT2G41070 41.772 237 107 6 22 243 16 236 5.44e-43 146
MS.gene99362.t1 AT2G41070 41.772 237 107 6 22 243 16 236 1.65e-42 145
MS.gene99362.t1 AT2G41070 41.772 237 107 6 22 243 16 236 1.65e-42 145
MS.gene99362.t1 AT2G41070 41.772 237 107 6 22 243 16 236 1.65e-42 145
MS.gene99362.t1 AT2G41070 41.772 237 107 6 22 243 25 245 2.16e-42 145
MS.gene99362.t1 AT1G49720 36.747 166 89 3 22 171 23 188 4.76e-23 96.7
MS.gene99362.t1 AT1G49720 38.532 109 67 0 135 243 249 357 8.16e-11 61.6
MS.gene99362.t1 AT1G49720 36.747 166 89 3 22 171 23 188 4.76e-23 96.7
MS.gene99362.t1 AT1G49720 38.532 109 67 0 135 243 249 357 8.16e-11 61.6
MS.gene99362.t1 AT1G49720 40.625 128 67 1 22 140 23 150 4.80e-23 96.7
MS.gene99362.t1 AT1G49720 38.532 109 67 0 135 243 249 357 9.32e-11 61.6
MS.gene99362.t1 AT4G34000 39.241 158 57 4 22 140 27 184 1.10e-21 93.2
MS.gene99362.t1 AT4G34000 38.776 98 40 1 146 243 341 418 2.20e-11 63.5
MS.gene99362.t1 AT4G34000 39.241 158 57 4 22 140 27 184 1.40e-21 93.2
MS.gene99362.t1 AT4G34000 38.776 98 40 1 146 243 341 418 2.74e-11 63.2
MS.gene99362.t1 AT4G34000 39.241 158 57 4 22 140 27 184 1.40e-21 93.2
MS.gene99362.t1 AT4G34000 38.776 98 40 1 146 243 341 418 2.74e-11 63.2
MS.gene99362.t1 AT4G34000 39.241 158 57 4 22 140 27 184 1.40e-21 93.2
MS.gene99362.t1 AT4G34000 38.776 98 40 1 146 243 341 418 2.74e-11 63.2
MS.gene99362.t1 AT3G19290 38.686 137 66 3 22 140 34 170 3.41e-20 89.0
MS.gene99362.t1 AT3G19290 38.686 137 66 3 22 140 34 170 4.07e-20 88.6
MS.gene99362.t1 AT3G19290 46.835 79 41 1 165 243 320 397 3.57e-11 62.8
MS.gene99362.t1 AT3G19290 38.686 137 66 3 22 140 34 170 5.16e-20 88.6
MS.gene99362.t1 AT3G19290 46.835 79 41 1 165 243 320 397 4.41e-11 62.4
MS.gene99362.t1 AT3G19290 38.686 137 66 3 22 140 34 170 5.45e-20 88.6
MS.gene99362.t1 AT3G19290 46.835 79 41 1 165 243 320 397 4.48e-11 62.4
MS.gene99362.t1 AT3G19290 38.686 137 66 3 22 140 34 170 5.45e-20 88.6
MS.gene99362.t1 AT3G19290 46.835 79 41 1 165 243 320 397 4.48e-11 62.4
MS.gene99362.t1 AT3G44460 33.721 258 128 6 24 241 37 291 9.81e-20 86.7
MS.gene99362.t1 AT1G03970 40.123 162 72 5 94 242 83 232 4.69e-18 81.3
MS.gene99362.t1 AT1G45249 38.849 139 56 5 22 140 21 150 4.60e-17 80.1
MS.gene99362.t1 AT1G45249 38.849 139 56 5 22 140 21 150 4.60e-17 80.1
MS.gene99362.t1 AT1G45249 38.849 139 56 5 22 140 21 150 4.60e-17 80.1
MS.gene99362.t1 AT1G45249 38.849 139 56 5 22 140 21 150 4.60e-17 80.1
MS.gene99362.t1 AT1G45249 38.849 139 56 5 22 140 21 150 4.84e-17 79.7
MS.gene99362.t1 AT1G45249 38.849 139 56 5 22 140 21 150 4.84e-17 79.7
MS.gene99362.t1 AT1G45249 38.849 139 56 5 22 140 21 150 4.94e-17 80.1
MS.gene99362.t1 AT1G45249 42.991 107 53 3 142 243 279 382 7.40e-12 64.7
MS.gene99362.t1 AT1G45249 38.849 139 56 5 22 140 36 165 5.05e-17 80.1
MS.gene99362.t1 AT1G45249 42.991 107 53 3 142 243 294 397 7.80e-12 64.7
MS.gene99362.t1 AT1G45249 38.849 139 56 5 22 140 36 165 5.05e-17 80.1
MS.gene99362.t1 AT1G45249 42.991 107 53 3 142 243 294 397 7.80e-12 64.7
MS.gene99362.t1 AT1G45249 38.849 139 56 5 22 140 21 150 6.46e-17 79.7
MS.gene99362.t1 AT5G44080 35.542 166 79 6 96 242 120 276 3.85e-13 68.2
MS.gene99362.t1 AT2G17770 29.762 168 92 5 98 240 1 167 9.73e-13 65.5
MS.gene99362.t1 AT2G36270 61.404 57 22 0 184 240 342 398 4.75e-12 65.5
MS.gene99362.t1 AT2G36270 61.404 57 22 0 184 240 342 398 5.10e-12 65.5
MS.gene99362.t1 AT2G36270 61.404 57 22 0 184 240 342 398 5.10e-12 65.5

Find 67 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGTCTACTAGGAGATTT+GGG 0.275351 5.1:+69467650 MS.gene99362:CDS
TAATAGTCTACTAGGAGATT+TGG 0.281034 5.1:+69467649 MS.gene99362:CDS
CCTTGGTAACCAGTTCATTA+TGG 0.284719 5.1:-69468320 None:intergenic
TGGGCAACAGTCACATTTAC+AGG 0.348819 5.1:+69467574 MS.gene99362:CDS
GCTGAAGGAAATAAGGTTGT+AGG 0.386567 5.1:+69467725 MS.gene99362:CDS
GGAGATTTGGGGAAGCCGTT+AGG 0.390252 5.1:+69467662 MS.gene99362:CDS
TGAGAAGGAAAATCAAGAAT+AGG 0.395993 5.1:+69468143 MS.gene99362:CDS
GTATTCGGTTGAAAGCTTAG+AGG 0.400524 5.1:-69468019 None:intergenic
GAGGATACCAAGCTTGTATT+CGG 0.402791 5.1:-69468034 None:intergenic
CAATGGGTTCTAAAAGTAAT+GGG 0.403194 5.1:+69467555 MS.gene99362:CDS
ATGCAAAACCAGGTCGCAAA+AGG 0.411790 5.1:+69468080 MS.gene99362:CDS
AGTTAGTTAAGCAAAATTCA+TGG 0.414879 5.1:+69467603 MS.gene99362:CDS
ATTGTTTCTTCTGACCTAGC+TGG 0.422038 5.1:-69467856 None:intergenic
GAGAAGGAAAATCAAGAATA+GGG 0.428756 5.1:+69468144 MS.gene99362:CDS
GCGTTCACGTGCAAGAAAAC+AGG 0.432338 5.1:+69468177 MS.gene99362:CDS
GTGGACTGCTGAAGGAAATA+AGG 0.439159 5.1:+69467718 MS.gene99362:CDS
CTAGGTCAGAAGAAACAATA+TGG 0.453967 5.1:+69467860 MS.gene99362:CDS
GAGATTTGGGGAAGCCGTTA+GGG 0.461727 5.1:+69467663 MS.gene99362:CDS
GGATGCATATGAGAAGGCTT+TGG 0.465775 5.1:+69468111 MS.gene99362:CDS
ACAATGGGTTCTAAAAGTAA+TGG 0.467214 5.1:+69467554 MS.gene99362:CDS
GTTAAGCAAAATTCATGGTA+TGG 0.470540 5.1:+69467608 MS.gene99362:CDS
GGAAGACGGTGGATGATGTA+TGG 0.489215 5.1:+69467825 MS.gene99362:CDS
TATTAGTCCGACGGTGGGGT+TGG 0.490449 5.1:+69467976 MS.gene99362:CDS
GAGTCTCGGTGGTACGACTT+TGG 0.502186 5.1:+69467913 MS.gene99362:CDS
ATCGTCTTCTCTTCAACGGC+AGG 0.510272 5.1:+69467772 MS.gene99362:CDS
GCTTCTATTAGTCCGACGGT+GGG 0.511307 5.1:+69467971 MS.gene99362:CDS
GACGGTGGGGTTGGATGCAA+TGG 0.513361 5.1:+69467985 MS.gene99362:CDS
AGGTCGCAAAAGGGATGCTC+CGG 0.515870 5.1:+69468090 MS.gene99362:CDS
CTGAAGGAAATAAGGTTGTA+GGG 0.518539 5.1:+69467726 MS.gene99362:CDS
GCAGGCTTACCATAATGAAC+TGG 0.521206 5.1:+69468311 MS.gene99362:intron
AGGAAATAAGGTTGTAGGGA+TGG 0.523139 5.1:+69467730 MS.gene99362:CDS
CTTTGGAAAGGAGGCTGAGA+AGG 0.527338 5.1:+69468128 MS.gene99362:CDS
CTTTCAACCGAATACAAGCT+TGG 0.528662 5.1:+69468027 MS.gene99362:CDS
CAAACTACTAATTGAAGAAG+AGG 0.529048 5.1:-69468053 None:intergenic
TTGAATGGGGATTCAAACAA+TGG 0.534421 5.1:+69467538 None:intergenic
TGAATGGGGATTCAAACAAT+GGG 0.535901 5.1:+69467539 None:intergenic
AAAGCCTTCTCATATGCATC+CGG 0.537373 5.1:-69468109 None:intergenic
TTGTTCTAGCAGAGTAACCT+TGG 0.544023 5.1:-69468337 None:intergenic
GATGAGGTTAATAGTCTACT+AGG 0.549320 5.1:+69467641 MS.gene99362:CDS
TGTAGGGATGGAGAGTGAGC+AGG 0.552172 5.1:+69467742 MS.gene99362:CDS
CGTCATCGTCTTCTCTTCAA+CGG 0.553592 5.1:+69467768 MS.gene99362:CDS
CAGAATGTGTGGACTGCTGA+AGG 0.557306 5.1:+69467710 MS.gene99362:CDS
TGCAAAACCAGGTCGCAAAA+GGG 0.571670 5.1:+69468081 MS.gene99362:CDS
ATGAGAAGGCTTTGGAAAGG+AGG 0.572932 5.1:+69468119 MS.gene99362:CDS
TGGAGCTTCTATTAGTCCGA+CGG 0.576977 5.1:+69467967 MS.gene99362:CDS
AGCTTCTATTAGTCCGACGG+TGG 0.577860 5.1:+69467970 MS.gene99362:CDS
ACGAGCTTCTTCAGAATGTG+TGG 0.579972 5.1:+69467699 MS.gene99362:CDS
CGTTGGCTCGTGCTTTGAGT+GGG 0.589340 5.1:+69467804 MS.gene99362:CDS
TCGTGCTTTGAGTGGGAAGA+CGG 0.590102 5.1:+69467811 MS.gene99362:CDS
ACGTTGGCTCGTGCTTTGAG+TGG 0.590747 5.1:+69467803 MS.gene99362:CDS
AGTTTGTCAGATGCAAAACC+AGG 0.591285 5.1:+69468070 MS.gene99362:CDS
TCAAGATTCATGCTCCCTAA+CGG 0.602234 5.1:-69467677 None:intergenic
CCATAATGAACTGGTTACCA+AGG 0.615234 5.1:+69468320 MS.gene99362:CDS
GTATGGTCTAACTCTTGATG+AGG 0.618117 5.1:+69467625 MS.gene99362:CDS
CTTCTATTAGTCCGACGGTG+GGG 0.618855 5.1:+69467972 MS.gene99362:CDS
TGGCGACGATGTGAAAGTTG+AGG 0.621646 5.1:+69467880 MS.gene99362:CDS
TGCTCCGGATGCATATGAGA+AGG 0.633586 5.1:+69468105 MS.gene99362:CDS
TATGCAGCTCAAGAAAGAGA+AGG 0.635674 5.1:+69468365 MS.gene99362:CDS
GAGGATAGCGAAATGAGTCT+CGG 0.636669 5.1:+69467899 MS.gene99362:CDS
TGCTTTGAGTGGGAAGACGG+TGG 0.649656 5.1:+69467814 MS.gene99362:CDS
ATTGCATCCAACCCCACCGT+CGG 0.650426 5.1:-69467983 None:intergenic
CATATGAGAAGGCTTTGGAA+AGG 0.652484 5.1:+69468116 MS.gene99362:CDS
GTATGGAGAGAAATCCAGCT+AGG 0.652627 5.1:+69467842 MS.gene99362:CDS
TTGAAAGCTTAGAGGAATAG+CGG 0.661783 5.1:-69468011 None:intergenic
ACGGCAGGCTAGTATGACGT+TGG 0.673052 5.1:+69467787 MS.gene99362:CDS
ATAGTCTACTAGGAGATTTG+GGG 0.688137 5.1:+69467651 MS.gene99362:CDS
GATAGCGAAATGAGTCTCGG+TGG 0.714876 5.1:+69467902 MS.gene99362:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAATATATTCCAACTA+AGG - chr5.1:69468269-69468288 None:intergenic 20.0%
! AGTTAGTTAAGCAAAATTCA+TGG + chr5.1:69467603-69467622 MS.gene99362:CDS 25.0%
! TAAGGAAAATGATGAATAGA+CGG - chr5.1:69468251-69468270 None:intergenic 25.0%
! TTACTTTACATAACGCATAA+AGG - chr5.1:69468208-69468227 None:intergenic 25.0%
!! TATTCATCATTTTCCTTAGT+TGG + chr5.1:69468253-69468272 MS.gene99362:intron 25.0%
!! TTTGTCACTTAAAAGTTTGA+TGG + chr5.1:69468287-69468306 MS.gene99362:intron 25.0%
AATAGTCTACTAGGAGATTT+GGG + chr5.1:69467650-69467669 MS.gene99362:CDS 30.0%
CAAACTACTAATTGAAGAAG+AGG - chr5.1:69468056-69468075 None:intergenic 30.0%
GAGAAGGAAAATCAAGAATA+GGG + chr5.1:69468144-69468163 MS.gene99362:CDS 30.0%
GTTAAGCAAAATTCATGGTA+TGG + chr5.1:69467608-69467627 MS.gene99362:CDS 30.0%
TAATAGTCTACTAGGAGATT+TGG + chr5.1:69467649-69467668 MS.gene99362:CDS 30.0%
TGAGAAGGAAAATCAAGAAT+AGG + chr5.1:69468143-69468162 MS.gene99362:CDS 30.0%
!! ACAATGGGTTCTAAAAGTAA+TGG + chr5.1:69467554-69467573 MS.gene99362:CDS 30.0%
!! CAATGGGTTCTAAAAGTAAT+GGG + chr5.1:69467555-69467574 MS.gene99362:CDS 30.0%
!!! AAGATTTTTTAGTGCAAGCA+GGG + chr5.1:69467936-69467955 MS.gene99362:CDS 30.0%
ATAGTCTACTAGGAGATTTG+GGG + chr5.1:69467651-69467670 MS.gene99362:CDS 35.0%
CTAGGTCAGAAGAAACAATA+TGG + chr5.1:69467860-69467879 MS.gene99362:CDS 35.0%
CTGAAGGAAATAAGGTTGTA+GGG + chr5.1:69467726-69467745 MS.gene99362:CDS 35.0%
GATGAGGTTAATAGTCTACT+AGG + chr5.1:69467641-69467660 MS.gene99362:CDS 35.0%
TTGAAAGCTTAGAGGAATAG+CGG - chr5.1:69468014-69468033 None:intergenic 35.0%
!! ACTTAAAAGTTTGATGGTGC+AGG + chr5.1:69468293-69468312 MS.gene99362:intron 35.0%
!!! GAAGATTTTTTAGTGCAAGC+AGG + chr5.1:69467935-69467954 MS.gene99362:CDS 35.0%
AAAGCCTTCTCATATGCATC+CGG - chr5.1:69468112-69468131 None:intergenic 40.0%
AGGAAATAAGGTTGTAGGGA+TGG + chr5.1:69467730-69467749 MS.gene99362:CDS 40.0%
AGTTTGTCAGATGCAAAACC+AGG + chr5.1:69468070-69468089 MS.gene99362:CDS 40.0%
CCATAATGAACTGGTTACCA+AGG + chr5.1:69468320-69468339 MS.gene99362:CDS 40.0%
CTTTCAACCGAATACAAGCT+TGG + chr5.1:69468027-69468046 MS.gene99362:CDS 40.0%
GAGGATACCAAGCTTGTATT+CGG - chr5.1:69468037-69468056 None:intergenic 40.0%
GCTGAAGGAAATAAGGTTGT+AGG + chr5.1:69467725-69467744 MS.gene99362:CDS 40.0%
GTATGGTCTAACTCTTGATG+AGG + chr5.1:69467625-69467644 MS.gene99362:CDS 40.0%
GTATTCGGTTGAAAGCTTAG+AGG - chr5.1:69468022-69468041 None:intergenic 40.0%
TCAAGATTCATGCTCCCTAA+CGG - chr5.1:69467680-69467699 None:intergenic 40.0%
TTGTTCTAGCAGAGTAACCT+TGG - chr5.1:69468340-69468359 None:intergenic 40.0%
! ATTGTTTCTTCTGACCTAGC+TGG - chr5.1:69467859-69467878 None:intergenic 40.0%
! CCTTGGTAACCAGTTCATTA+TGG - chr5.1:69468323-69468342 None:intergenic 40.0%
!! CATATGAGAAGGCTTTGGAA+AGG + chr5.1:69468116-69468135 MS.gene99362:CDS 40.0%
ACGAGCTTCTTCAGAATGTG+TGG + chr5.1:69467699-69467718 MS.gene99362:CDS 45.0%
ATGCAAAACCAGGTCGCAAA+AGG + chr5.1:69468080-69468099 MS.gene99362:CDS 45.0%
CACGTGCAAGAAAACAGGTT+TGG + chr5.1:69468182-69468201 MS.gene99362:intron 45.0%
CGTCATCGTCTTCTCTTCAA+CGG + chr5.1:69467768-69467787 MS.gene99362:CDS 45.0%
GAGGATAGCGAAATGAGTCT+CGG + chr5.1:69467899-69467918 MS.gene99362:CDS 45.0%
GCAGGCTTACCATAATGAAC+TGG + chr5.1:69468311-69468330 MS.gene99362:intron 45.0%
GGATGCATATGAGAAGGCTT+TGG + chr5.1:69468111-69468130 MS.gene99362:CDS 45.0%
GTATGGAGAGAAATCCAGCT+AGG + chr5.1:69467842-69467861 MS.gene99362:CDS 45.0%
TGCAAAACCAGGTCGCAAAA+GGG + chr5.1:69468081-69468100 MS.gene99362:CDS 45.0%
TGGAGCTTCTATTAGTCCGA+CGG + chr5.1:69467967-69467986 MS.gene99362:CDS 45.0%
TGGGCAACAGTCACATTTAC+AGG + chr5.1:69467574-69467593 MS.gene99362:CDS 45.0%
! GTGGACTGCTGAAGGAAATA+AGG + chr5.1:69467718-69467737 MS.gene99362:CDS 45.0%
!! ATGAGAAGGCTTTGGAAAGG+AGG + chr5.1:69468119-69468138 MS.gene99362:CDS 45.0%
AGCTTCTATTAGTCCGACGG+TGG + chr5.1:69467970-69467989 MS.gene99362:CDS 50.0%
ATCGTCTTCTCTTCAACGGC+AGG + chr5.1:69467772-69467791 MS.gene99362:CDS 50.0%
CTTCTATTAGTCCGACGGTG+GGG + chr5.1:69467972-69467991 MS.gene99362:CDS 50.0%
GAGATTTGGGGAAGCCGTTA+GGG + chr5.1:69467663-69467682 MS.gene99362:CDS 50.0%
GATAGCGAAATGAGTCTCGG+TGG + chr5.1:69467902-69467921 MS.gene99362:CDS 50.0%
GCGTTCACGTGCAAGAAAAC+AGG + chr5.1:69468177-69468196 MS.gene99362:CDS 50.0%
GCTTCTATTAGTCCGACGGT+GGG + chr5.1:69467971-69467990 MS.gene99362:CDS 50.0%
GGAAGACGGTGGATGATGTA+TGG + chr5.1:69467825-69467844 MS.gene99362:CDS 50.0%
TGCTCCGGATGCATATGAGA+AGG + chr5.1:69468105-69468124 MS.gene99362:CDS 50.0%
TGGCGACGATGTGAAAGTTG+AGG + chr5.1:69467880-69467899 MS.gene99362:CDS 50.0%
! CAGAATGTGTGGACTGCTGA+AGG + chr5.1:69467710-69467729 MS.gene99362:CDS 50.0%
! CTTTGGAAAGGAGGCTGAGA+AGG + chr5.1:69468128-69468147 MS.gene99362:CDS 50.0%
! TCGTGCTTTGAGTGGGAAGA+CGG + chr5.1:69467811-69467830 MS.gene99362:CDS 50.0%
! TTTTCTTGCACGTGAACGCG+CGG - chr5.1:69468176-69468195 None:intergenic 50.0%
ACGGCAGGCTAGTATGACGT+TGG + chr5.1:69467787-69467806 MS.gene99362:CDS 55.0%
AGGTCGCAAAAGGGATGCTC+CGG + chr5.1:69468090-69468109 MS.gene99362:CDS 55.0%
ATTGCATCCAACCCCACCGT+CGG - chr5.1:69467986-69468005 None:intergenic 55.0%
GAGTCTCGGTGGTACGACTT+TGG + chr5.1:69467913-69467932 MS.gene99362:CDS 55.0%
GGAGATTTGGGGAAGCCGTT+AGG + chr5.1:69467662-69467681 MS.gene99362:CDS 55.0%
TATTAGTCCGACGGTGGGGT+TGG + chr5.1:69467976-69467995 MS.gene99362:CDS 55.0%
TGTAGGGATGGAGAGTGAGC+AGG + chr5.1:69467742-69467761 MS.gene99362:CDS 55.0%
! GTGCAAGCAGGGCTTTTTGC+TGG + chr5.1:69467947-69467966 MS.gene99362:CDS 55.0%
! TGCTTTGAGTGGGAAGACGG+TGG + chr5.1:69467814-69467833 MS.gene99362:CDS 55.0%
!! ACGTTGGCTCGTGCTTTGAG+TGG + chr5.1:69467803-69467822 MS.gene99362:CDS 55.0%
!! CGTTGGCTCGTGCTTTGAGT+GGG + chr5.1:69467804-69467823 MS.gene99362:CDS 55.0%
GACGGTGGGGTTGGATGCAA+TGG + chr5.1:69467985-69468004 MS.gene99362:CDS 60.0%
!! GGAGCATCCCTTTTGCGACC+TGG - chr5.1:69468091-69468110 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 69467542 69468386 69467542 ID=MS.gene99362
chr5.1 mRNA 69467542 69468386 69467542 ID=MS.gene99362.t1;Parent=MS.gene99362
chr5.1 exon 69467542 69468198 69467542 ID=MS.gene99362.t1.exon1;Parent=MS.gene99362.t1
chr5.1 CDS 69467542 69468198 69467542 ID=cds.MS.gene99362.t1;Parent=MS.gene99362.t1
chr5.1 exon 69468315 69468386 69468315 ID=MS.gene99362.t1.exon2;Parent=MS.gene99362.t1
chr5.1 CDS 69468315 69468386 69468315 ID=cds.MS.gene99362.t1;Parent=MS.gene99362.t1
Gene Sequence

>MS.gene99362

ATGGGGATTCAAACAATGGGTTCTAAAAGTAATGGGCAACAGTCACATTTACAGGCTAATCAGTTAGTTAAGCAAAATTCATGGTATGGTCTAACTCTTGATGAGGTTAATAGTCTACTAGGAGATTTGGGGAAGCCGTTAGGGAGCATGAATCTTGACGAGCTTCTTCAGAATGTGTGGACTGCTGAAGGAAATAAGGTTGTAGGGATGGAGAGTGAGCAGGCTTCGTCATCGTCTTCTCTTCAACGGCAGGCTAGTATGACGTTGGCTCGTGCTTTGAGTGGGAAGACGGTGGATGATGTATGGAGAGAAATCCAGCTAGGTCAGAAGAAACAATATGGCGACGATGTGAAAGTTGAGGATAGCGAAATGAGTCTCGGTGGTACGACTTTGGAAGATTTTTTAGTGCAAGCAGGGCTTTTTGCTGGAGCTTCTATTAGTCCGACGGTGGGGTTGGATGCAATGGATACCGCTATTCCTCTAAGCTTTCAACCGAATACAAGCTTGGTATCCTCTTCTTCAATTAGTAGTTTGTCAGATGCAAAACCAGGTCGCAAAAGGGATGCTCCGGATGCATATGAGAAGGCTTTGGAAAGGAGGCTGAGAAGGAAAATCAAGAATAGGGAATCTGCCGCGCGTTCACGTGCAAGAAAACAGGTTTGGCCTTTATGCGTTATGTAAAGTAATAAGCTTAAATTGATTGTATCCGTCTATTCATCATTTTCCTTAGTTGGAATATATTTGTTTTGTCACTTAAAAGTTTGATGGTGCAGGCTTACCATAATGAACTGGTTACCAAGGTTACTCTGCTAGAACAACAAAATATGCAGCTCAAGAAAGAGAAG
Protein sequence

>MS.gene99362.t1

MGIQTMGSKSNGQQSHLQANQLVKQNSWYGLTLDEVNSLLGDLGKPLGSMNLDELLQNVWTAEGNKVVGMESEQASSSSSLQRQASMTLARALSGKTVDDVWREIQLGQKKQYGDDVKVEDSEMSLGGTTLEDFLVQAGLFAGASISPTVGLDAMDTAIPLSFQPNTSLVSSSSISSLSDAKPGRKRDAPDAYEKALERRLRRKIKNRESAARSRARKQAYHNELVTKVTLLEQQNMQLKKEK