AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99369

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99369.t1 MTR_5g062790 71.545 246 22 3 8 211 53 292 2.52e-109 318
MS.gene99369.t1 MTR_5g088080 66.234 231 26 6 8 211 56 261 7.36e-88 262
MS.gene99369.t1 MTR_5g088150 66.234 231 26 6 8 211 56 261 7.36e-88 262
MS.gene99369.t1 MTR_5g488210 66.234 231 26 6 8 211 56 261 7.36e-88 262
MS.gene99369.t1 MTR_5g088640 67.100 231 24 7 8 211 56 261 8.39e-88 263
MS.gene99369.t1 MTR_5g488170 73.295 176 20 3 8 156 56 231 7.74e-79 238
MS.gene99369.t1 MTR_4g128190 53.947 228 38 7 8 198 42 239 8.19e-65 202
MS.gene99369.t1 MTR_5g088610 69.524 105 29 1 8 109 53 157 3.20e-43 150
MS.gene99369.t1 MTR_1g085770 49.432 176 57 8 8 160 56 222 9.99e-35 127
MS.gene99369.t1 MTR_1g085880 57.627 118 43 4 8 118 56 173 6.07e-31 114
MS.gene99369.t1 MTR_1g083630 48.387 93 46 2 8 99 56 147 2.13e-20 90.9
MS.gene99369.t1 MTR_1g017000 35.821 134 77 3 8 133 57 189 1.72e-19 85.5
MS.gene99369.t1 MTR_1g021230 38.281 128 65 4 8 122 101 227 2.57e-19 87.4
MS.gene99369.t1 MTR_3g052450 40.196 102 58 3 8 107 84 184 1.36e-18 85.5
MS.gene99369.t1 MTR_3g052430 44.595 74 40 1 8 81 85 157 6.82e-18 83.6
MS.gene99369.t1 MTR_8g042410 32.877 146 81 3 8 146 81 216 1.15e-17 82.8
MS.gene99369.t1 MTR_7g110830 40.000 105 52 4 8 102 56 159 6.26e-17 80.1
MS.gene99369.t1 MTR_3g011610 30.252 119 76 3 8 120 81 198 7.92e-17 80.1
MS.gene99369.t1 MTR_1g085640 40.659 91 52 2 8 97 56 145 1.16e-16 79.3
MS.gene99369.t1 MTR_8g095390 50.725 69 32 2 8 75 56 123 2.37e-16 77.8
MS.gene99369.t1 MTR_5g078140 45.455 88 44 3 8 94 56 140 2.60e-16 77.8
MS.gene99369.t1 MTR_3g074520 45.455 77 40 2 8 83 56 131 2.84e-16 77.8
MS.gene99369.t1 MTR_5g029840 46.753 77 39 2 8 83 56 131 3.11e-16 77.8
MS.gene99369.t1 MTR_4g478180 46.575 73 37 2 8 79 57 128 3.19e-16 77.8
MS.gene99369.t1 MTR_5g007370 43.182 88 46 3 8 92 56 142 3.70e-16 77.0
MS.gene99369.t1 MTR_4g073420 45.238 84 42 3 8 90 56 136 4.35e-16 76.6
MS.gene99369.t1 MTR_3g065440 47.297 74 37 2 8 80 56 128 5.50e-16 76.6
MS.gene99369.t1 MTR_7g076740 46.377 69 35 2 8 75 57 124 7.83e-16 76.3
MS.gene99369.t1 MTR_3g077110 45.205 73 38 2 8 79 56 127 1.26e-15 75.9
MS.gene99369.t1 MTR_1g112760 45.205 73 38 2 8 79 57 128 1.42e-15 74.3
MS.gene99369.t1 MTR_4g105130 36.364 99 61 2 8 105 56 153 1.42e-15 75.9
MS.gene99369.t1 MTR_7g450950 48.438 64 32 1 8 71 198 260 1.67e-15 75.5
MS.gene99369.t1 MTR_2g088170 47.368 76 39 1 8 83 73 147 1.70e-15 76.3
MS.gene99369.t1 MTR_1g085040 42.169 83 42 3 8 85 56 137 2.34e-15 75.5
MS.gene99369.t1 MTR_1g110460 33.083 133 59 4 8 111 70 201 2.50e-15 74.7
MS.gene99369.t1 MTR_7g035350 55.738 61 26 1 8 68 266 325 3.23e-15 75.5
MS.gene99369.t1 MTR_3g097450 42.169 83 46 2 8 89 56 137 4.17e-15 73.9
MS.gene99369.t1 MTR_4g063100 45.070 71 35 2 8 75 22 91 4.79e-15 72.8
MS.gene99369.t1 MTR_2g064160 44.928 69 36 2 8 75 55 122 5.81e-15 73.9
MS.gene99369.t1 MTR_2g089620 47.143 70 35 2 8 76 56 124 8.05e-15 73.6
MS.gene99369.t1 MTR_4g102380 47.143 70 35 2 8 76 56 124 8.52e-15 72.8
MS.gene99369.t1 MTR_4g091490 47.826 69 34 2 8 75 57 124 9.99e-15 73.6
MS.gene99369.t1 MTR_4g063100 45.070 71 35 2 8 75 51 120 1.15e-14 72.0
MS.gene99369.t1 MTR_3g463400 48.438 64 32 1 8 71 174 236 1.16e-14 73.6
MS.gene99369.t1 MTR_2g097910 44.304 79 39 3 8 85 64 138 1.20e-14 72.8
MS.gene99369.t1 MTR_8g017440 44.444 72 37 3 8 77 56 126 1.47e-14 72.8
MS.gene99369.t1 MTR_3g461490 43.836 73 39 2 8 79 56 127 1.75e-14 72.4
MS.gene99369.t1 MTR_6g006030 50.000 60 29 1 8 67 58 116 1.82e-14 70.9
MS.gene99369.t1 MTR_4g485530 44.928 69 36 2 8 75 56 123 1.94e-14 70.5
MS.gene99369.t1 MTR_5g070020 46.875 64 33 1 8 71 163 225 2.11e-14 72.4
MS.gene99369.t1 MTR_7g035075 48.333 60 30 1 8 67 58 116 2.24e-14 70.5
MS.gene99369.t1 MTR_3g077650 45.833 72 36 2 8 77 222 292 2.32e-14 72.8
MS.gene99369.t1 MTR_4g082290 39.560 91 51 3 8 95 56 145 3.21e-14 72.4
MS.gene99369.t1 MTR_2g011660 47.826 69 34 2 8 75 57 124 3.50e-14 72.0
MS.gene99369.t1 MTR_4g082230 39.560 91 51 3 8 95 56 145 3.60e-14 72.0
MS.gene99369.t1 MTR_6g012690 40.964 83 47 2 8 89 56 137 3.71e-14 72.0
MS.gene99369.t1 MTR_8g031360 44.928 69 36 2 8 75 58 125 3.77e-14 71.2
MS.gene99369.t1 MTR_4g065017 35.644 101 58 3 8 102 61 160 4.15e-14 71.6
MS.gene99369.t1 MTR_0008s0280 41.892 74 42 1 8 81 56 128 4.41e-14 70.1
MS.gene99369.t1 MTR_7g111290 50.909 55 26 1 8 62 14 67 5.95e-14 71.2
MS.gene99369.t1 MTR_5g014990 51.667 60 28 1 8 67 57 115 6.14e-14 70.9
MS.gene99369.t1 MTR_7g115650 46.875 64 32 2 8 70 56 118 8.24e-14 68.9
MS.gene99369.t1 MTR_0008s0390 39.759 83 42 3 8 90 57 131 8.53e-14 70.1
MS.gene99369.t1 MTR_4g029540 40.777 103 55 4 8 106 54 154 8.77e-14 70.1
MS.gene99369.t1 MTR_5g079670 40.000 75 43 2 8 81 55 128 9.92e-14 68.9
MS.gene99369.t1 MTR_2g096380 45.588 68 33 2 8 72 31 97 1.12e-13 68.9
MS.gene99369.t1 MTR_4g057635 50.000 60 29 1 8 67 57 115 1.16e-13 70.1
MS.gene99369.t1 MTR_7g111290 50.909 55 26 1 8 62 56 109 1.32e-13 70.5
MS.gene99369.t1 MTR_8g017500 40.580 69 39 2 8 75 56 123 1.65e-13 70.1
MS.gene99369.t1 MTR_1g062940 48.438 64 29 2 8 71 50 109 1.80e-13 68.2
MS.gene99369.t1 MTR_7g011170 42.466 73 40 2 8 79 56 127 1.86e-13 69.3
MS.gene99369.t1 MTR_3g028740 48.333 60 30 1 8 67 66 124 1.93e-13 69.7
MS.gene99369.t1 MTR_7g451170 47.887 71 32 2 8 74 232 301 1.96e-13 70.1
MS.gene99369.t1 MTR_5g049190 46.269 67 35 1 1 67 53 118 2.39e-13 68.2
MS.gene99369.t1 MTR_2g099740 43.478 69 37 2 8 75 56 123 2.40e-13 69.7
MS.gene99369.t1 MTR_1g057980 47.761 67 34 1 8 74 121 186 2.42e-13 68.9
MS.gene99369.t1 MTR_1g017140 53.226 62 27 2 8 68 57 117 2.54e-13 69.3
MS.gene99369.t1 MTR_2g095520 51.786 56 26 1 8 63 57 111 2.58e-13 69.3
MS.gene99369.t1 MTR_6g055910 43.077 65 36 1 8 72 29 92 2.64e-13 68.6
MS.gene99369.t1 MTR_1g100653 35.366 82 52 1 8 89 56 136 2.69e-13 68.9
MS.gene99369.t1 MTR_8g017390 45.000 60 32 1 8 67 57 115 3.23e-13 69.3
MS.gene99369.t1 MTR_8g006470 48.438 64 31 2 8 70 54 116 3.66e-13 68.6
MS.gene99369.t1 MTR_8g017340 44.928 69 36 2 8 75 57 124 4.29e-13 69.3
MS.gene99369.t1 MTR_8g017540 45.000 60 32 1 8 67 102 160 4.38e-13 68.9
MS.gene99369.t1 MTR_0251s0050 32.323 99 57 3 8 105 57 146 5.37e-13 67.8
MS.gene99369.t1 MTR_4g105660 46.667 60 31 1 8 67 221 279 5.98e-13 68.6
MS.gene99369.t1 MTR_8g017350 43.478 69 37 2 8 75 57 124 6.25e-13 68.9
MS.gene99369.t1 MTR_3g103570 50.000 62 29 2 8 68 57 117 7.35e-13 68.2
MS.gene99369.t1 MTR_2g096380 45.588 68 33 2 8 72 50 116 7.42e-13 67.0
MS.gene99369.t1 MTR_5g010650 54.545 55 24 1 8 62 151 204 9.78e-13 68.2
MS.gene99369.t1 MTR_6g055910 45.161 62 33 1 8 69 58 118 1.10e-12 67.0
MS.gene99369.t1 MTR_1g086530 39.062 64 38 1 8 71 77 139 1.14e-12 67.0
MS.gene99369.t1 MTR_1g073170 42.857 63 35 1 8 70 64 125 1.34e-12 66.2
MS.gene99369.t1 MTR_1g086510 42.188 64 36 1 8 71 65 127 1.63e-12 66.2
MS.gene99369.t1 MTR_2g089450 43.333 60 33 1 8 67 56 114 1.83e-12 65.9
MS.gene99369.t1 MTR_0008s0470 33.663 101 56 4 8 105 57 149 2.04e-12 66.2
MS.gene99369.t1 MTR_1g100667 45.000 60 32 1 8 67 57 115 2.06e-12 66.2
MS.gene99369.t1 MTR_4g088015 48.333 60 30 1 8 67 262 320 2.11e-12 67.0
MS.gene99369.t1 MTR_1g043080 43.333 60 33 1 8 67 56 114 2.15e-12 65.9
MS.gene99369.t1 MTR_4g128670 50.000 56 27 1 8 63 57 111 2.17e-12 66.6
MS.gene99369.t1 MTR_7g037260 48.333 60 30 1 8 67 186 244 2.63e-12 66.6
MS.gene99369.t1 MTR_4g097570 52.727 55 25 1 8 62 58 111 2.66e-12 65.9
MS.gene99369.t1 MTR_4g097570 52.727 55 25 1 8 62 57 110 2.66e-12 65.9
MS.gene99369.t1 MTR_6g009430 41.096 73 41 2 8 79 56 127 2.85e-12 66.2
MS.gene99369.t1 MTR_1g076150 43.333 60 33 1 8 67 56 114 3.40e-12 65.1
MS.gene99369.t1 MTR_7g096930 43.333 60 33 1 8 67 56 114 4.03e-12 65.5
MS.gene99369.t1 MTR_4g019370 44.776 67 33 2 8 74 79 141 4.31e-12 65.9
MS.gene99369.t1 MTR_0197s0010 39.080 87 43 3 8 93 45 122 4.41e-12 64.7
MS.gene99369.t1 MTR_5g010020 42.857 56 31 1 8 63 56 110 5.24e-12 65.5
MS.gene99369.t1 MTR_1g045610 39.130 69 38 2 8 76 65 129 5.42e-12 64.7
MS.gene99369.t1 MTR_2g067420 50.000 56 27 1 8 63 58 112 7.78e-12 64.7
MS.gene99369.t1 MTR_4g100720 46.429 56 29 1 8 63 57 111 1.16e-11 62.4
MS.gene99369.t1 MTR_8g098860 40.000 65 37 2 8 71 56 119 1.18e-11 64.3
MS.gene99369.t1 MTR_6g090405 41.791 67 38 1 8 74 57 122 1.60e-11 63.2
MS.gene99369.t1 MTR_2g033170 46.875 64 33 1 8 71 68 130 1.87e-11 63.9
MS.gene99369.t1 MTR_1g043050 39.726 73 41 2 8 78 56 127 1.88e-11 63.2
MS.gene99369.t1 MTR_4g125520 46.429 56 29 1 8 63 56 110 2.04e-11 63.5
MS.gene99369.t1 MTR_7g061330 46.032 63 32 2 8 69 154 215 2.11e-11 64.3
MS.gene99369.t1 MTR_7g461410 46.032 63 32 2 8 69 154 215 2.11e-11 64.3
MS.gene99369.t1 MTR_7g061330 46.032 63 32 2 8 69 118 179 2.88e-11 63.9
MS.gene99369.t1 MTR_2g089420 31.532 111 71 3 8 117 55 161 2.89e-11 63.5
MS.gene99369.t1 MTR_7g102110 41.667 60 34 1 8 67 57 115 3.01e-11 62.8
MS.gene99369.t1 MTR_4g123040 46.875 64 33 1 8 71 68 130 6.27e-11 62.0
MS.gene99369.t1 MTR_6g013135 37.168 113 62 4 50 159 149 255 6.34e-11 62.4
MS.gene99369.t1 MTR_7g010210 43.750 64 34 2 8 70 56 118 6.84e-11 62.0
MS.gene99369.t1 MTR_7g010210 43.750 64 34 2 8 70 56 118 7.85e-11 61.6
MS.gene99369.t1 MTR_3g083540 38.356 73 43 2 8 79 85 156 7.86e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99369.t1 AT2G26960 39.655 116 57 2 8 111 64 178 3.28e-22 95.5
MS.gene99369.t1 AT2G26950 52.055 73 34 1 8 80 60 131 4.32e-22 94.7
MS.gene99369.t1 AT3G11440 46.753 77 40 1 8 84 85 160 3.85e-19 87.0
MS.gene99369.t1 AT3G11440 38.462 117 65 3 8 118 85 200 4.76e-19 87.0
MS.gene99369.t1 AT3G11440 38.462 117 65 3 8 118 85 200 4.76e-19 87.0
MS.gene99369.t1 AT3G11440 38.462 117 65 3 8 118 85 200 4.76e-19 87.0
MS.gene99369.t1 AT5G06100 46.575 73 38 1 8 80 76 147 2.03e-18 84.7
MS.gene99369.t1 AT5G06100 46.575 73 38 1 8 80 76 147 2.16e-18 85.1
MS.gene99369.t1 AT5G06100 46.575 73 38 1 8 80 76 147 2.16e-18 85.1
MS.gene99369.t1 AT5G06100 46.575 73 38 1 8 80 76 147 2.16e-18 85.1
MS.gene99369.t1 AT5G06100 46.575 73 38 1 8 80 76 147 2.16e-18 85.1
MS.gene99369.t1 AT4G26930 41.667 84 44 2 8 91 63 141 3.31e-18 84.0
MS.gene99369.t1 AT2G32460 35.294 102 58 2 8 109 50 143 5.58e-18 83.6
MS.gene99369.t1 AT2G32460 35.294 102 58 2 8 109 62 155 6.01e-18 83.6
MS.gene99369.t1 AT5G55020 44.000 75 41 1 8 82 70 143 6.55e-18 83.6
MS.gene99369.t1 AT5G26660 45.122 82 43 2 8 88 25 105 9.19e-18 82.0
MS.gene99369.t1 AT4G01680 41.489 94 50 3 8 97 56 148 2.61e-17 79.3
MS.gene99369.t1 AT1G18570 46.575 73 37 2 8 79 57 128 3.05e-17 80.9
MS.gene99369.t1 AT5G62320 44.186 86 46 2 8 92 64 148 3.05e-17 79.3
MS.gene99369.t1 AT5G26660 45.122 82 43 2 8 88 56 136 3.39e-17 80.5
MS.gene99369.t1 AT2G25230 52.113 71 32 2 8 77 67 136 3.86e-17 78.6
MS.gene99369.t1 AT5G16600 47.126 87 42 3 8 93 56 139 4.26e-17 80.1
MS.gene99369.t1 AT4G01680 41.489 94 50 3 8 97 68 160 6.13e-17 79.7
MS.gene99369.t1 AT4G01680 41.489 94 50 3 8 97 56 148 9.25e-17 79.3
MS.gene99369.t1 AT1G57560 35.507 138 76 5 8 136 56 189 1.14e-16 78.6
MS.gene99369.t1 AT1G57560 41.000 100 53 3 8 102 56 154 1.45e-16 77.8
MS.gene99369.t1 AT4G18770 56.667 60 25 1 8 67 258 316 2.39e-16 78.6
MS.gene99369.t1 AT4G38620 38.532 109 61 4 8 113 56 161 7.00e-16 76.3
MS.gene99369.t1 AT3G12720 43.421 76 41 2 8 82 66 140 7.22e-16 76.3
MS.gene99369.t1 AT1G09540 49.275 69 33 2 8 75 56 123 8.23e-16 76.6
MS.gene99369.t1 AT5G65230 46.154 78 40 2 8 84 56 132 8.52e-16 76.3
MS.gene99369.t1 AT4G34990 43.011 93 49 3 8 99 56 145 8.65e-16 75.9
MS.gene99369.t1 AT5G16770 42.857 77 42 2 8 83 56 131 1.18e-15 75.9
MS.gene99369.t1 AT5G16770 42.857 77 42 2 8 83 56 131 1.18e-15 75.9
MS.gene99369.t1 AT4G22680 39.091 110 61 4 8 113 56 163 1.64e-15 74.7
MS.gene99369.t1 AT3G27810 48.438 64 32 1 8 71 15 77 1.73e-15 73.2
MS.gene99369.t1 AT1G22640 47.297 74 37 2 8 80 56 128 1.73e-15 74.7
MS.gene99369.t1 AT5G16770 42.857 77 42 2 8 83 56 131 2.07e-15 75.5
MS.gene99369.t1 AT5G16770 42.857 77 42 2 8 83 56 131 2.07e-15 75.5
MS.gene99369.t1 AT5G56110 46.575 73 37 2 8 79 56 127 2.52e-15 75.1
MS.gene99369.t1 AT5G10280 44.156 77 41 2 8 83 56 131 2.67e-15 75.1
MS.gene99369.t1 AT1G66230 44.578 83 40 3 8 85 56 137 2.70e-15 74.3
MS.gene99369.t1 AT5G40350 32.759 116 72 4 8 118 16 130 3.41e-15 72.0
MS.gene99369.t1 AT3G53200 51.667 60 28 1 8 67 20 78 3.50e-15 72.8
MS.gene99369.t1 AT5G40360 52.459 61 28 1 8 68 199 258 4.49e-15 74.7
MS.gene99369.t1 AT1G35515 47.826 69 34 2 8 75 56 123 4.55e-15 72.8
MS.gene99369.t1 AT3G61250 44.928 69 36 2 8 75 56 123 5.06e-15 73.9
MS.gene99369.t1 AT4G09460 38.462 104 60 3 8 108 56 158 5.09e-15 72.8
MS.gene99369.t1 AT3G27810 48.438 64 32 1 8 71 64 126 6.51e-15 72.4
MS.gene99369.t1 AT5G23000 53.333 60 27 1 8 67 57 115 7.25e-15 73.6
MS.gene99369.t1 AT3G53200 51.667 60 28 1 8 67 53 111 7.88e-15 72.4
MS.gene99369.t1 AT1G79180 39.604 101 53 3 8 101 91 190 8.92e-15 73.6
MS.gene99369.t1 AT4G21440 47.826 69 34 2 8 75 56 123 9.71e-15 73.6
MS.gene99369.t1 AT3G02940 41.558 77 43 2 8 83 56 131 1.19e-14 72.8
MS.gene99369.t1 AT5G57620 52.308 65 29 2 8 71 57 120 1.27e-14 73.2
MS.gene99369.t1 AT5G40350 48.333 60 30 1 8 67 61 119 1.39e-14 71.2
MS.gene99369.t1 AT1G79180 39.604 101 53 3 8 101 58 157 1.42e-14 72.4
MS.gene99369.t1 AT1G34670 47.143 70 35 2 8 76 56 124 1.49e-14 73.2
MS.gene99369.t1 AT5G58850 51.667 60 28 1 8 67 146 204 1.57e-14 73.2
MS.gene99369.t1 AT5G54230 46.377 69 35 2 8 75 56 123 1.77e-14 72.4
MS.gene99369.t1 AT5G14340 42.466 73 40 2 8 79 68 139 1.85e-14 72.0
MS.gene99369.t1 AT3G02940 41.558 77 43 2 8 83 56 131 1.94e-14 72.4
MS.gene99369.t1 AT3G02940 41.558 77 43 2 8 83 56 131 1.94e-14 72.4
MS.gene99369.t1 AT4G05100 49.275 69 33 2 8 75 57 124 2.40e-14 72.0
MS.gene99369.t1 AT1G22640 46.479 71 36 2 11 80 2 71 3.02e-14 70.1
MS.gene99369.t1 AT3G49690 51.667 60 28 1 8 67 57 115 3.17e-14 71.6
MS.gene99369.t1 AT4G17785 44.286 70 37 2 8 76 57 125 3.25e-14 72.0
MS.gene99369.t1 AT4G17785 44.286 70 37 2 8 76 57 125 3.29e-14 72.0
MS.gene99369.t1 AT1G74080 40.000 85 49 2 8 91 56 139 3.34e-14 72.0
MS.gene99369.t1 AT3G01530 49.123 57 28 1 8 64 69 124 3.48e-14 70.1
MS.gene99369.t1 AT3G46130 46.479 71 34 2 8 75 21 90 3.59e-14 70.5
MS.gene99369.t1 AT4G28110 47.143 70 35 2 8 76 56 124 3.77e-14 71.2
MS.gene99369.t1 AT5G59780 46.479 71 34 2 8 75 31 100 3.93e-14 70.1
MS.gene99369.t1 AT1G68320 43.750 64 35 1 8 71 63 125 4.04e-14 71.2
MS.gene99369.t1 AT5G59780 46.479 71 34 2 8 75 52 121 4.30e-14 70.5
MS.gene99369.t1 AT1G48000 46.032 63 33 1 8 70 76 137 5.45e-14 70.1
MS.gene99369.t1 AT3G27785 46.875 64 33 1 8 71 230 292 5.54e-14 71.6
MS.gene99369.t1 AT3G46130 46.479 71 34 2 8 75 31 100 5.75e-14 70.1
MS.gene99369.t1 AT3G12820 47.692 65 32 2 8 71 10 73 6.17e-14 68.9
MS.gene99369.t1 AT5G65790 51.667 60 28 1 8 67 57 115 6.19e-14 71.2
MS.gene99369.t1 AT3G46130 46.479 71 34 2 8 75 53 122 6.21e-14 70.1
MS.gene99369.t1 AT1G16490 38.636 88 53 1 8 95 58 144 6.68e-14 70.5
MS.gene99369.t1 AT3G01140 35.955 89 55 2 8 95 99 186 8.12e-14 71.2
MS.gene99369.t1 AT5G11050 50.000 60 29 1 8 67 146 204 1.01e-13 70.9
MS.gene99369.t1 AT1G25340 43.750 64 35 1 8 71 57 119 1.06e-13 69.7
MS.gene99369.t1 AT1G25340 43.750 64 35 1 8 71 62 124 1.29e-13 69.7
MS.gene99369.t1 AT1G25340 43.750 64 35 1 8 71 57 119 1.29e-13 70.1
MS.gene99369.t1 AT5G60890 41.096 73 41 2 8 79 56 127 1.42e-13 69.7
MS.gene99369.t1 AT2G16720 37.500 88 53 2 8 94 56 142 1.47e-13 69.3
MS.gene99369.t1 AT3G01140 35.955 89 55 2 8 95 56 143 1.52e-13 70.1
MS.gene99369.t1 AT5G12870 48.438 64 31 2 8 70 62 124 1.99e-13 68.9
MS.gene99369.t1 AT3G13890 45.000 60 32 1 8 67 65 123 2.00e-13 69.7
MS.gene99369.t1 AT3G60460 46.875 64 32 2 8 70 55 117 2.04e-13 69.3
MS.gene99369.t1 AT1G74430 38.571 70 41 2 8 76 56 124 2.15e-13 68.9
MS.gene99369.t1 AT3G13890 45.000 60 32 1 8 67 56 114 2.26e-13 69.7
MS.gene99369.t1 AT1G56160 50.000 60 29 1 8 67 58 116 2.49e-13 68.9
MS.gene99369.t1 AT5G15310 39.024 82 48 2 8 88 56 136 2.63e-13 68.2
MS.gene99369.t1 AT3G12820 47.692 65 32 2 8 71 58 121 2.68e-13 68.2
MS.gene99369.t1 AT3G08500 47.619 63 32 1 8 70 74 135 3.07e-13 69.3
MS.gene99369.t1 AT5G61420 42.466 73 40 2 8 79 56 127 3.38e-13 69.3
MS.gene99369.t1 AT5G40430 44.615 65 35 1 8 72 94 157 3.47e-13 68.2
MS.gene99369.t1 AT4G37780 47.761 67 32 2 8 72 57 122 3.74e-13 68.6
MS.gene99369.t1 AT5G15310 39.024 82 48 2 8 88 56 136 4.59e-13 68.6
MS.gene99369.t1 AT5G15310 39.024 82 48 2 8 88 56 136 4.70e-13 68.6
MS.gene99369.t1 AT2G47190 46.032 63 33 1 8 70 64 125 1.16e-12 67.0
MS.gene99369.t1 AT5G07690 43.836 73 39 2 8 79 56 127 1.31e-12 67.4
MS.gene99369.t1 AT4G12350 46.377 69 35 2 8 75 56 123 1.47e-12 66.6
MS.gene99369.t1 AT5G14750 35.417 96 56 3 8 100 26 118 1.69e-12 64.7
MS.gene99369.t1 AT5G07700 42.466 73 40 2 8 79 56 127 1.83e-12 67.0
MS.gene99369.t1 AT5G07700 42.466 73 40 2 8 79 56 127 1.83e-12 67.0
MS.gene99369.t1 AT2G36890 40.000 70 41 1 8 77 57 125 2.05e-12 66.2
MS.gene99369.t1 AT3G13540 33.696 92 52 3 8 91 67 157 2.32e-12 65.9
MS.gene99369.t1 AT1G63910 43.750 64 34 2 8 70 56 118 3.07e-12 66.2
MS.gene99369.t1 AT2G36890 40.000 70 41 1 8 77 98 166 3.18e-12 66.2
MS.gene99369.t1 AT3G23250 44.444 63 33 2 8 69 56 117 3.23e-12 65.9
MS.gene99369.t1 AT2G31180 38.028 71 43 1 8 78 56 125 5.52e-12 64.7
MS.gene99369.t1 AT3G24310 42.857 63 35 1 8 70 62 123 7.58e-12 64.3
MS.gene99369.t1 AT3G28470 46.429 56 29 1 8 63 56 110 1.23e-11 64.3
MS.gene99369.t1 AT5G52600 35.238 105 55 4 8 102 56 157 1.39e-11 62.8
MS.gene99369.t1 AT4G13480 42.857 63 35 1 8 70 50 111 1.48e-11 63.5
MS.gene99369.t1 AT3G47600 43.750 64 34 2 8 70 50 112 1.53e-11 63.9
MS.gene99369.t1 AT5G14750 44.643 56 30 1 8 63 60 114 1.69e-11 62.4
MS.gene99369.t1 AT3G27920 39.744 78 45 2 8 84 58 134 2.11e-11 62.8
MS.gene99369.t1 AT5G49620 46.875 64 33 1 8 71 70 132 2.47e-11 63.2
MS.gene99369.t1 AT5G62470 35.294 102 60 3 8 108 55 151 2.50e-11 63.5
MS.gene99369.t1 AT5G62470 35.294 102 60 3 8 108 56 152 2.58e-11 63.5
MS.gene99369.t1 AT3G09370 26.744 172 113 5 8 171 184 350 2.75e-11 63.9
MS.gene99369.t1 AT5G35550 43.333 60 33 1 8 67 61 119 2.87e-11 62.8
MS.gene99369.t1 AT3G47600 43.750 64 34 2 8 70 56 118 3.51e-11 63.2
MS.gene99369.t1 AT5G02320 46.032 63 32 2 8 69 168 229 4.08e-11 63.5
MS.gene99369.t1 AT5G02320 46.032 63 32 2 8 69 168 229 4.08e-11 63.5
MS.gene99369.t1 AT3G06490 46.875 64 33 1 8 71 63 125 4.56e-11 62.8
MS.gene99369.t1 AT3G09370 43.333 60 33 1 8 67 176 234 4.79e-11 63.2
MS.gene99369.t1 AT5G02320 46.032 63 32 2 8 69 108 169 5.13e-11 63.2
MS.gene99369.t1 AT1G06180 41.667 60 34 1 8 67 56 114 5.51e-11 61.6
MS.gene99369.t1 AT3G09370 43.333 60 33 1 8 67 171 229 5.57e-11 62.8
MS.gene99369.t1 AT4G32730 46.032 63 32 2 8 69 128 189 7.73e-11 62.8
MS.gene99369.t1 AT4G32730 46.032 63 32 2 8 69 128 189 7.73e-11 62.8
MS.gene99369.t1 AT4G32730 46.032 63 32 2 8 69 128 189 7.73e-11 62.8
MS.gene99369.t1 AT4G32730 46.032 63 32 2 8 69 128 189 7.73e-11 62.8
MS.gene99369.t1 AT5G40330 41.071 56 32 1 8 63 56 110 8.29e-11 60.8
MS.gene99369.t1 AT4G32730 46.032 63 32 2 8 69 128 189 8.35e-11 62.8

Find 42 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATACCTCGTTTCAATTTC+TGG 0.062469 5.1:+69375648 None:intergenic
GATTTCAGGGGTAGCATTAT+TGG 0.227047 5.1:-69375119 MS.gene99369:CDS
CCTACAACCAGATGTGAAAA+AGG 0.249095 5.1:-69375569 MS.gene99369:CDS
ATGTATTGACTTCAGTAATT+TGG 0.259715 5.1:-69374907 MS.gene99369:CDS
TCAGTATCATGGTGAATTTA+TGG 0.290945 5.1:-69375015 MS.gene99369:CDS
ATAATGACATCAAGAACTTT+TGG 0.308735 5.1:-69375325 MS.gene99369:CDS
CTTGTGAATCCTCAACTTGT+TGG 0.318952 5.1:+69375219 None:intergenic
AAACCTCCTTGATGACTTCA+TGG 0.396227 5.1:-69374940 MS.gene99369:CDS
ATGTCATTATCGCTTCTTCC+CGG 0.399929 5.1:+69375338 None:intergenic
CGTTTCAATTTCTGGCTCCA+TGG 0.423427 5.1:+69375656 None:intergenic
TCATCCGGTTCCATCTTGTC+AGG 0.436579 5.1:+69375257 None:intergenic
TCCTCAAATTCCACCACCTA+TGG 0.442042 5.1:-69375042 MS.gene99369:CDS
GGATAGTCACCAAGCATCAT+AGG 0.444307 5.1:+69375062 None:intergenic
TCCATAGGTGGTGGAATTTG+AGG 0.460831 5.1:+69375041 None:intergenic
AAAAGTATGGTGAATTCAAA+TGG 0.466521 5.1:-69375501 MS.gene99369:CDS
CTACTATTCAACTCATCATC+CGG 0.471736 5.1:+69375242 None:intergenic
TGGAACTTCTCATATACCTA+TGG 0.477216 5.1:-69375099 MS.gene99369:CDS
CTTCCTTCACCTATGATGCT+TGG 0.481674 5.1:-69375071 MS.gene99369:CDS
GTCACCCTTCCCTGACAAGA+TGG 0.495250 5.1:-69375267 MS.gene99369:CDS
TATTGACTTCAGTAATTTGG+AGG 0.499792 5.1:-69374904 MS.gene99369:CDS
CGGTTCCATCTTGTCAGGGA+AGG 0.508810 5.1:+69375262 None:intergenic
CTTCCCTGACAAGATGGAAC+CGG 0.509188 5.1:-69375261 MS.gene99369:CDS
CAAATGGTCTAAGCTGGCTC+AGG 0.526373 5.1:-69375485 MS.gene99369:CDS
TACTGAGTCTCCATAGGTGG+TGG 0.534844 5.1:+69375032 None:intergenic
AGGACGATGTTGAAGTCGGC+TGG 0.537674 5.1:-69374884 MS.gene99369:CDS
GAATAGTAGCCAACAAGTTG+AGG 0.541704 5.1:-69375228 MS.gene99369:CDS
TGAATTCAAATGGTCTAAGC+TGG 0.550324 5.1:-69375491 MS.gene99369:CDS
ATGGTCTAAGCTGGCTCAGG+AGG 0.563124 5.1:-69375482 MS.gene99369:intron
AGCATCATAGGTGAAGGAAG+TGG 0.575321 5.1:+69375074 None:intergenic
CCTATGGAGACTCAGTATCA+TGG 0.585538 5.1:-69375026 MS.gene99369:CDS
CCATGATACTGAGTCTCCAT+AGG 0.586617 5.1:+69375026 None:intergenic
GGTGAAGGAAGTGGAGCCAT+AGG 0.590422 5.1:+69375083 None:intergenic
TTGGAGGACGATGTTGAAGT+CGG 0.592484 5.1:-69374888 MS.gene99369:CDS
ATGGATCCATGAAGTCATCA+AGG 0.595005 5.1:+69374934 None:intergenic
TCACCAAGCATCATAGGTGA+AGG 0.597667 5.1:+69375068 None:intergenic
GGTTCCATCTTGTCAGGGAA+GGG 0.605286 5.1:+69375263 None:intergenic
AAAAGAAAACTTGAAAAGCG+TGG 0.617466 5.1:-69375293 MS.gene99369:CDS
CTGAAGTCAATACATAGACA+TGG 0.618549 5.1:+69374915 None:intergenic
CATCCGGTTCCATCTTGTCA+GGG 0.638065 5.1:+69375258 None:intergenic
TGATACTGAGTCTCCATAGG+TGG 0.687296 5.1:+69375029 None:intergenic
GATCCATGAAGTCATCAAGG+AGG 0.752147 5.1:+69374937 None:intergenic
TGGAGCCAGAAATTGAAACG+AGG 0.770845 5.1:-69375653 MS.gene99369:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTAAATTTCAATTG+TGG + chr5.1:69375170-69375189 None:intergenic 15.0%
!! TTTATCTCATCAAAAATTGA+TGG + chr5.1:69375194-69375213 None:intergenic 20.0%
!!! ATGAAAAACTTTTAGATTTC+AGG - chr5.1:69375213-69375232 MS.gene99369:CDS 20.0%
!!! TGAAAAACTTTTAGATTTCA+GGG - chr5.1:69375214-69375233 MS.gene99369:CDS 20.0%
!!! TTTGAGTTCTATAAAAAGTA+TGG - chr5.1:69374832-69374851 MS.gene99369:CDS 20.0%
! AACAAAATAATCAACACAAG+TGG + chr5.1:69374946-69374965 None:intergenic 25.0%
!! AAAAGTATGGTGAATTCAAA+TGG - chr5.1:69374845-69374864 MS.gene99369:CDS 25.0%
!! AATTTATGGATCCAGATTTT+TGG - chr5.1:69375345-69375364 MS.gene99369:intron 25.0%
!! ATAATGACATCAAGAACTTT+TGG - chr5.1:69375021-69375040 MS.gene99369:CDS 25.0%
!! GAAAAACTTTTAGATTTCAG+GGG - chr5.1:69375215-69375234 MS.gene99369:CDS 25.0%
!!! ATGTATTGACTTCAGTAATT+TGG - chr5.1:69375439-69375458 MS.gene99369:intron 25.0%
!!! CTTTTTTCTTCTTCACTAAA+TGG + chr5.1:69374805-69374824 None:intergenic 25.0%
AAAAGAAAACTTGAAAAGCG+TGG - chr5.1:69375053-69375072 MS.gene99369:CDS 30.0%
CAAGTGGTGAATATTATAGA+AGG + chr5.1:69374930-69374949 None:intergenic 30.0%
TCAGTATCATGGTGAATTTA+TGG - chr5.1:69375331-69375350 MS.gene99369:CDS 30.0%
! AAACGAGGTATCAAAAAATG+CGG - chr5.1:69374708-69374727 MS.gene99369:CDS 30.0%
! GTTCTTTTTGTGTTAGTTAC+CGG - chr5.1:69374989-69375008 MS.gene99369:CDS 30.0%
! TTAGTGGCATGAGATTTTAA+GGG + chr5.1:69375657-69375676 None:intergenic 30.0%
! TTCTTTTTGTGTTAGTTACC+GGG - chr5.1:69374990-69375009 MS.gene99369:CDS 30.0%
!! TATTGACTTCAGTAATTTGG+AGG - chr5.1:69375442-69375461 MS.gene99369:intron 30.0%
CTACAACCAGATGTGAAAAA+GGG - chr5.1:69374778-69374797 MS.gene99369:CDS 35.0%
CTACTATTCAACTCATCATC+CGG + chr5.1:69375107-69375126 None:intergenic 35.0%
CTGAAGTCAATACATAGACA+TGG + chr5.1:69375434-69375453 None:intergenic 35.0%
CTGTTGTGTAACCAAAAATC+TGG + chr5.1:69375359-69375378 None:intergenic 35.0%
GTAAAAGTTGTCGTCTAAGA+TGG - chr5.1:69374746-69374765 MS.gene99369:CDS 35.0%
TGAATTCAAATGGTCTAAGC+TGG - chr5.1:69374855-69374874 MS.gene99369:CDS 35.0%
TGATACCTCGTTTCAATTTC+TGG + chr5.1:69374701-69374720 None:intergenic 35.0%
TGGAACTTCTCATATACCTA+TGG - chr5.1:69375247-69375266 MS.gene99369:CDS 35.0%
! AACGAGGTATCAAAAAATGC+GGG - chr5.1:69374709-69374728 MS.gene99369:CDS 35.0%
ATGGATCCATGAAGTCATCA+AGG + chr5.1:69375415-69375434 None:intergenic 40.0%
ATGTCATTATCGCTTCTTCC+CGG + chr5.1:69375011-69375030 None:intergenic 40.0%
CCTACAACCAGATGTGAAAA+AGG - chr5.1:69374777-69374796 MS.gene99369:CDS 40.0%
CTTGTGAATCCTCAACTTGT+TGG + chr5.1:69375130-69375149 None:intergenic 40.0%
GAATAGTAGCCAACAAGTTG+AGG - chr5.1:69375118-69375137 MS.gene99369:CDS 40.0%
GATTTCAGGGGTAGCATTAT+TGG - chr5.1:69375227-69375246 MS.gene99369:CDS 40.0%
! AAACCTCCTTGATGACTTCA+TGG - chr5.1:69375406-69375425 MS.gene99369:intron 40.0%
! ACGAGGTATCAAAAAATGCG+GGG - chr5.1:69374710-69374729 MS.gene99369:CDS 40.0%
!! AATGGACCCTTTTTCACATC+TGG + chr5.1:69374787-69374806 None:intergenic 40.0%
!! CCTTTTTCACATCTGGTTGT+AGG + chr5.1:69374780-69374799 None:intergenic 40.0%
AGCATCATAGGTGAAGGAAG+TGG + chr5.1:69375275-69375294 None:intergenic 45.0%
CCATGATACTGAGTCTCCAT+AGG + chr5.1:69375323-69375342 None:intergenic 45.0%
CCTATGGAGACTCAGTATCA+TGG - chr5.1:69375320-69375339 MS.gene99369:CDS 45.0%
CTTCCTTCACCTATGATGCT+TGG - chr5.1:69375275-69375294 MS.gene99369:CDS 45.0%
GATCCATGAAGTCATCAAGG+AGG + chr5.1:69375412-69375431 None:intergenic 45.0%
GGATAGTCACCAAGCATCAT+AGG + chr5.1:69375287-69375306 None:intergenic 45.0%
TCACCAAGCATCATAGGTGA+AGG + chr5.1:69375281-69375300 None:intergenic 45.0%
TCCTCAAATTCCACCACCTA+TGG - chr5.1:69375304-69375323 MS.gene99369:CDS 45.0%
TGATACTGAGTCTCCATAGG+TGG + chr5.1:69375320-69375339 None:intergenic 45.0%
TGGAGCCAGAAATTGAAACG+AGG - chr5.1:69374693-69374712 MS.gene99369:CDS 45.0%
TTGGAGGACGATGTTGAAGT+CGG - chr5.1:69375458-69375477 MS.gene99369:intron 45.0%
!! TCCATAGGTGGTGGAATTTG+AGG + chr5.1:69375308-69375327 None:intergenic 45.0%
AATGCGGGGCTTATACGTTG+CGG - chr5.1:69374724-69374743 MS.gene99369:CDS 50.0%
CATCCGGTTCCATCTTGTCA+GGG + chr5.1:69375091-69375110 None:intergenic 50.0%
CTTCCCTGACAAGATGGAAC+CGG - chr5.1:69375085-69375104 MS.gene99369:CDS 50.0%
GGTTCCATCTTGTCAGGGAA+GGG + chr5.1:69375086-69375105 None:intergenic 50.0%
TACTGAGTCTCCATAGGTGG+TGG + chr5.1:69375317-69375336 None:intergenic 50.0%
TCATCCGGTTCCATCTTGTC+AGG + chr5.1:69375092-69375111 None:intergenic 50.0%
! CAAATGGTCTAAGCTGGCTC+AGG - chr5.1:69374861-69374880 MS.gene99369:CDS 50.0%
AGGACGATGTTGAAGTCGGC+TGG - chr5.1:69375462-69375481 MS.gene99369:intron 55.0%
CGGTTCCATCTTGTCAGGGA+AGG + chr5.1:69375087-69375106 None:intergenic 55.0%
GGTGAAGGAAGTGGAGCCAT+AGG + chr5.1:69375266-69375285 None:intergenic 55.0%
GTCACCCTTCCCTGACAAGA+TGG - chr5.1:69375079-69375098 MS.gene99369:CDS 55.0%
! ATGGTCTAAGCTGGCTCAGG+AGG - chr5.1:69374864-69374883 MS.gene99369:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 69374692 69375676 69374692 ID=MS.gene99369
chr5.1 mRNA 69374692 69375676 69374692 ID=MS.gene99369.t1;Parent=MS.gene99369
chr5.1 exon 69375654 69375676 69375654 ID=MS.gene99369.t1.exon1;Parent=MS.gene99369.t1
chr5.1 CDS 69375654 69375676 69375654 ID=cds.MS.gene99369.t1;Parent=MS.gene99369.t1
chr5.1 exon 69375483 69375603 69375483 ID=MS.gene99369.t1.exon2;Parent=MS.gene99369.t1
chr5.1 CDS 69375483 69375603 69375483 ID=cds.MS.gene99369.t1;Parent=MS.gene99369.t1
chr5.1 exon 69374692 69375363 69374692 ID=MS.gene99369.t1.exon3;Parent=MS.gene99369.t1
chr5.1 CDS 69374692 69375363 69374692 ID=cds.MS.gene99369.t1;Parent=MS.gene99369.t1
Gene Sequence

>MS.gene99369

ATGGAGCCAGAAATTGAAACGAGGTATCAAAAAATGCGGGGCTTATACGTTGCGGTAAAAGTTGTCGTCTAAGATGGTATAATCACCTACAACCAGATGTGAAAAAGGGTCCATTTAGTGAAGAAGAAAAAAGAAAAGTTTTTGAGTTCTATAAAAAGTATGGTGAATTCAAATGGTCTAAGCTGGCTCAGGAGGTAACTTCTTTTACTTTCTTTAATTTGAAATATTGATCTATCCTTCTATAATATTCACCACTTGTGTTGATTATTTTGTTGATCATGTCATTAATTTGTATTCGTTCTTTTTGTGTTAGTTACCGGGAAGAAGCGATAATGACATCAAGAACTTTTGGAATGCGAGAAAAAGAAAACTTGAAAAGCGTGGCTTGTCACCCTTCCCTGACAAGATGGAACCGGATGATGAGTTGAATAGTAGCCAACAAGTTGAGGATTCACAAGAAGATGAATTTAATATACCACAATTGAAATTTAGAAAATATCCATCAATTTTTGATGAGATAAATGAAAAACTTTTAGATTTCAGGGGTAGCATTATTGGAACTTCTCATATACCTATGGCTCCACTTCCTTCACCTATGATGCTTGGTGACTATCCTCAAATTCCACCACCTATGGAGACTCAGTATCATGGTGAATTTATGGATCCAGATTTTTGGTTACACAACAGTTCATTAGACAATGACGATGCTGAAGCAAACCTCCTTGATGACTTCATGGATCCATGTCTATGTATTGACTTCAGTAATTTGGAGGACGATGTTGAAGTCGGCTGGCAGTCGTTTATTTGTTTGACAACGATGATAACAGTAACTTGCATGACAAGATATAAAAAGCTTATAGTGTTTGCAACACAATTTTTCTGTATTTTTGTTCTGAGAATTGTGTTTTTTGTCTACTGTCAGCATATGTTTCAGAACTTCTATATGATCTTTAATTTGTTGTCCCTTAAAATCTCATGCCACTAA
Protein sequence

>MS.gene99369.t1

MEPEIETRWYNHLQPDVKKGPFSEEEKRKVFEFYKKYGEFKWSKLAQELPGRSDNDIKNFWNARKRKLEKRGLSPFPDKMEPDDELNSSQQVEDSQEDEFNIPQLKFRKYPSIFDEINEKLLDFRGSIIGTSHIPMAPLPSPMMLGDYPQIPPPMETQYHGEFMDPDFWLHNSSLDNDDAEANLLDDFMDPCLCIDFSNLEDDVEVGWQSFICLTTMITVTCMTRYKKLIVFATQFFCIFVLRIVFFVYCQHMFQNFYMIFNLLSLKISCH