AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99371

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99371.t1 MTR_5g088060 77.433 483 45 6 174 630 17 461 0.0 689
MS.gene99371.t1 MTR_5g088060 89.143 175 17 1 1 173 1 175 4.42e-100 313
MS.gene99371.t1 MTR_5g488160 77.433 483 45 6 174 630 17 461 0.0 689
MS.gene99371.t1 MTR_5g488160 89.143 175 17 1 1 173 1 175 4.42e-100 313
MS.gene99371.t1 MTR_5g088010 88.142 253 20 4 384 630 1 249 7.06e-147 425
MS.gene99371.t1 MTR_5g027570 65.532 235 66 7 355 578 1 231 5.12e-85 266
MS.gene99371.t1 MTR_5g088005 79.141 163 19 2 5 165 12 161 1.45e-77 244
MS.gene99371.t1 MTR_5g088005 64.444 180 16 3 174 352 24 156 1.07e-61 202
MS.gene99371.t1 MTR_5g088200 69.668 211 18 3 9 173 23 233 1.84e-77 265
MS.gene99371.t1 MTR_5g027770 47.714 350 85 10 7 327 31 311 4.36e-70 230
MS.gene99371.t1 MTR_5g027770 59.868 152 42 3 3 135 160 311 6.38e-40 149
MS.gene99371.t1 MTR_5g027770 56.098 82 22 3 368 443 98 171 6.59e-15 76.6
MS.gene99371.t1 MTR_5g027550 48.797 291 72 9 355 630 1 229 4.98e-58 195
MS.gene99371.t1 MTR_5g027780 41.410 227 41 5 174 400 40 174 3.87e-32 123
MS.gene99371.t1 MTR_5g027780 47.059 119 26 3 13 121 36 127 1.47e-15 75.9
MS.gene99371.t1 MTR_8g063600 56.962 79 32 2 436 513 103 180 1.17e-21 96.3
MS.gene99371.t1 MTR_8g063870 50.000 94 46 1 420 513 74 166 1.45e-21 95.5
MS.gene99371.t1 MTR_5g069710 56.962 79 30 2 440 517 134 209 2.13e-21 95.9
MS.gene99371.t1 MTR_3g462790 62.687 67 22 1 440 506 149 212 3.67e-21 95.5
MS.gene99371.t1 MTR_1g111830 61.194 67 23 1 440 506 126 189 2.23e-20 91.3
MS.gene99371.t1 MTR_5g081860 55.556 81 34 2 427 506 113 192 2.89e-20 91.7
MS.gene99371.t1 MTR_7g067080 44.348 115 50 3 440 552 142 244 5.87e-20 91.7
MS.gene99371.t1 MTR_4g111975 51.899 79 33 3 436 512 135 210 3.40e-19 89.0
MS.gene99371.t1 MTR_5g075760 42.241 116 64 2 395 510 64 176 2.07e-18 84.7
MS.gene99371.t1 MTR_1g048660 54.167 72 30 1 440 511 14 82 6.47e-18 79.3
MS.gene99371.t1 MTR_3g104370 47.143 70 37 0 440 509 93 162 1.05e-17 83.2
MS.gene99371.t1 MTR_2g100930 52.308 65 28 1 440 504 111 172 6.43e-17 83.2
MS.gene99371.t1 MTR_4g100630 50.000 66 28 2 440 504 97 158 4.67e-16 80.1
MS.gene99371.t1 MTR_4g015130 55.000 60 24 1 448 507 3 59 1.10e-15 72.8
MS.gene99371.t1 MTR_5g075790 39.200 125 54 3 395 510 73 184 1.36e-15 76.6
MS.gene99371.t1 MTR_6g092540 50.769 65 29 1 440 504 99 160 2.81e-15 77.4
MS.gene99371.t1 MTR_8g101650 63.043 46 17 0 440 485 107 152 2.83e-15 77.0
MS.gene99371.t1 MTR_5g037080 65.217 46 16 0 440 485 104 149 3.26e-15 77.4
MS.gene99371.t1 MTR_4g107230 66.667 45 15 0 440 484 86 130 4.20e-15 76.6
MS.gene99371.t1 MTR_1g083180 38.889 126 56 7 406 513 13 135 1.84e-14 72.4
MS.gene99371.t1 MTR_2g090305 35.714 98 58 2 440 535 30 124 4.17e-14 71.6
MS.gene99371.t1 MTR_0036s0260 40.260 77 43 1 440 516 30 103 1.51e-13 70.5
MS.gene99371.t1 MTR_3g070110 46.667 90 40 3 439 520 96 185 2.61e-13 70.1
MS.gene99371.t1 MTR_1g033620 54.237 59 23 2 454 511 21 76 4.78e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99371.t1 AT5G58900 39.706 136 66 3 440 570 143 267 4.06e-22 97.4
MS.gene99371.t1 AT5G08520 55.556 81 32 2 436 515 115 192 1.00e-21 96.7
MS.gene99371.t1 AT5G04760 59.211 76 28 1 431 506 92 164 1.14e-21 94.4
MS.gene99371.t1 AT5G01200 60.000 70 24 2 440 508 148 214 1.95e-20 92.0
MS.gene99371.t1 AT2G38090 56.410 78 29 3 433 508 135 209 9.29e-20 90.9
MS.gene99371.t1 AT1G49010 52.439 82 34 3 436 515 131 209 2.58e-19 89.7
MS.gene99371.t1 AT5G61620 42.857 126 52 5 432 549 101 214 1.85e-18 87.4
MS.gene99371.t1 AT3G10580 39.552 134 63 5 427 550 77 202 1.15e-17 83.6
MS.gene99371.t1 AT3G10580 38.028 142 70 5 427 558 77 210 1.24e-17 84.3
MS.gene99371.t1 AT3G11280 48.913 92 38 3 440 527 129 215 1.48e-17 83.6
MS.gene99371.t1 AT3G11280 48.913 92 38 3 440 527 129 215 1.48e-17 83.6
MS.gene99371.t1 AT5G23650 51.316 76 34 1 440 515 122 194 2.13e-17 84.3
MS.gene99371.t1 AT5G05790 53.750 80 29 3 436 510 128 204 1.23e-16 81.3
MS.gene99371.t1 AT5G05790 53.750 80 29 3 436 510 128 204 1.23e-16 81.3
MS.gene99371.t1 AT5G47390 44.681 94 45 4 440 530 98 187 1.60e-16 82.0
MS.gene99371.t1 AT1G70000 65.217 46 16 0 440 485 100 145 8.81e-16 78.2
MS.gene99371.t1 AT1G70000 65.217 46 16 0 440 485 100 145 8.81e-16 78.2
MS.gene99371.t1 AT5G56840 53.448 58 27 0 440 497 93 150 1.07e-15 77.4
MS.gene99371.t1 AT4G09450 52.941 68 29 1 440 507 93 157 1.83e-15 75.9
MS.gene99371.t1 AT3G16350 63.043 46 17 0 440 485 139 184 5.82e-15 77.8
MS.gene99371.t1 AT1G74840 66.667 45 15 0 440 484 98 142 6.26e-15 75.1
MS.gene99371.t1 AT1G74840 66.667 45 15 0 440 484 98 142 9.68e-15 75.1
MS.gene99371.t1 AT1G19000 66.667 45 15 0 440 484 104 148 1.41e-14 75.1
MS.gene99371.t1 AT1G19000 66.667 45 15 0 440 484 104 148 1.41e-14 75.1
MS.gene99371.t1 AT3G10590 50.000 68 30 2 440 507 113 176 1.77e-12 67.4

Find 178 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCATATCTTTCACATTT+TGG 0.099316 5.1:-69362951 None:intergenic
TCACCTTGTTCTTGGGTATT+TGG 0.139349 5.1:-69360868 None:intergenic
TCAACATGATTCATAGGTTT+TGG 0.219569 5.1:-69360991 None:intergenic
CCTGCTGCTGCCGGGGATAC+AGG 0.250754 5.1:-69360742 None:intergenic
TCAACACGATTCATAGGTTT+TGG 0.254607 5.1:-69360144 None:intergenic
CTGTCCAATGCCCTTTCCTT+GGG 0.257949 5.1:-69362604 None:intergenic
TCCTATAGCTCCTTCTGTTC+AGG 0.275418 5.1:+69361047 MS.gene99371:CDS
CCTGCTGCCGCCGGGGATAC+AGG 0.277402 5.1:-69361689 None:intergenic
CTTGGGGCATGACTTTCTTC+TGG 0.281577 5.1:-69362587 None:intergenic
TCCTAGAGCTCCTTCTGTTC+AGG 0.288148 5.1:+69360200 MS.gene99371:CDS
TTCTCAAGTTTGTTCATATC+AGG 0.295923 5.1:-69363333 None:intergenic
TCACATGGTCACCTTGTTCT+TGG 0.300461 5.1:-69360876 None:intergenic
TCTGTCCAATGCCCTTTCCT+TGG 0.314383 5.1:-69362605 None:intergenic
CTGAACATGTTTGGCATCAT+TGG 0.316454 5.1:-69360791 None:intergenic
TGGGTATTTGGCCTTCCATT+TGG 0.324095 5.1:-69360856 None:intergenic
ACATTCTCAACATGATTCAT+AGG 0.327654 5.1:-69360997 None:intergenic
TATGCTTTCCCACCTGGTTC+AGG 0.329227 5.1:+69361638 MS.gene99371:CDS
CCATTTGTGTTGTTGCGCTT+GGG 0.329671 5.1:-69361512 None:intergenic
TGGATATTTGGCCTTCCATT+TGG 0.341904 5.1:-69361803 None:intergenic
CCACCAAAATGTGAAAGATA+TGG 0.352224 5.1:+69362948 MS.gene99371:CDS
CACATGGTCACCTTGTTCTT+GGG 0.355028 5.1:-69360875 None:intergenic
GCCATTTGTGTTGTTGCGCT+TGG 0.355090 5.1:-69361513 None:intergenic
TAGAAGAAATCAAACGGTTC+TGG 0.355215 5.1:+69361437 MS.gene99371:intron
TGAGAAGATGCGCAGCTTGT+TGG 0.358077 5.1:+69363350 MS.gene99371:CDS
CCTGCATATGCTTTCCCACC+TGG 0.358776 5.1:+69361632 MS.gene99371:CDS
CACCGGAGGCTGAACATGTT+TGG 0.362724 5.1:-69360800 None:intergenic
CACCGGAGGCTGAACATGTT+TGG 0.362724 5.1:-69361747 None:intergenic
GATGCTCCTGTGTTGGTTGT+TGG 0.370634 5.1:+69360931 MS.gene99371:CDS
TTGGATAAAGCAACACCAAC+TGG 0.371101 5.1:-69363296 None:intergenic
GATGTTCCTGTGTTGGTTGT+TGG 0.372353 5.1:+69360084 MS.gene99371:CDS
ACATTCTCAACACGATTCAT+AGG 0.374878 5.1:-69360150 None:intergenic
AAACAGAAATCAAACGGTTC+TGG 0.380690 5.1:+69360592 MS.gene99371:intron
TGCTATGCTCAGAGGGATCT+TGG 0.382368 5.1:-69362430 None:intergenic
GTGTTGTTGCGCTTGGGGCC+TGG 0.396203 5.1:-69361506 None:intergenic
AACCTTGTCCTGCTGCTGCC+GGG 0.402092 5.1:-69360750 None:intergenic
TTCTGTGCCTAGTGTTGGTC+AGG 0.402578 5.1:+69360173 MS.gene99371:CDS
GGACGAAAATTCGGAGCAAC+AGG 0.414645 5.1:-69361581 None:intergenic
CTGAACATGTTTGGCATCAA+TGG 0.415429 5.1:-69361738 None:intergenic
AACCTTGTCCTGCTGCCGCC+GGG 0.418211 5.1:-69361697 None:intergenic
TATGCTATTGATTATCCAAA+TGG 0.421444 5.1:+69361788 MS.gene99371:CDS
CCCAAGCGCAACAACACAAA+TGG 0.425501 5.1:+69361512 MS.gene99371:CDS
AAATATTTCAAAAGAATTTG+TGG 0.425853 5.1:+69362876 MS.gene99371:CDS
TTACTGTTGCACTTGGGACC+TGG 0.426576 5.1:-69360661 None:intergenic
TCCTTTAGTCACTGCTCCTA+TGG 0.430956 5.1:+69363206 MS.gene99371:CDS
TATGCTGTTAATTATCCAAA+TGG 0.436533 5.1:+69360841 MS.gene99371:CDS
GGATTCTCACCATTAGGATA+AGG 0.437709 5.1:-69361662 None:intergenic
TGTGAAAGATATGGAGAAGA+AGG 0.441203 5.1:+69362957 MS.gene99371:CDS
GAACAACAACAGGAGAAAAC+TGG 0.441684 5.1:+69362455 MS.gene99371:CDS
GGCTTAGGATTCTCACCATT+AGG 0.442479 5.1:-69361668 None:intergenic
AATCGGTTCTACAATTCCTT+CGG 0.444800 5.1:+69363161 MS.gene99371:CDS
GGTGATGGCATCTTATTCTT+CGG 0.445274 5.1:-69360625 None:intergenic
ATTGTCCTTGTTGTTTAAGA+TGG 0.446908 5.1:-69363259 None:intergenic
AAACCTTGTCCTGCTGCTGC+CGG 0.447814 5.1:-69360751 None:intergenic
ACCACCCGACTCAATGATAT+CGG 0.449690 5.1:-69362480 None:intergenic
GGCTTAGGATTCTCGCCATT+AGG 0.456259 5.1:-69360721 None:intergenic
TTGGTGTTGCTTTATCCAAT+CGG 0.462526 5.1:+69363300 MS.gene99371:CDS
CCTGTATCCCCGGCAGCAGC+AGG 0.464792 5.1:+69360742 MS.gene99371:CDS
TTATGTGCCTAGTGTTGGTC+AGG 0.464970 5.1:+69361020 MS.gene99371:CDS
GGTTCAGGACCTTATCCTAA+TGG 0.464993 5.1:+69361653 MS.gene99371:CDS
CCTGTATCCCCGGCGGCAGC+AGG 0.468531 5.1:+69361689 MS.gene99371:CDS
GCCGCCGGGGATACAGGCTT+AGG 0.470478 5.1:-69361683 None:intergenic
GGTACCCTAGGACGAAAATT+CGG 0.472201 5.1:-69361590 None:intergenic
GCTCATTTAAATCAATTTGA+AGG 0.475975 5.1:-69362397 None:intergenic
TCAAATTGATTTAAATGAGC+CGG 0.477484 5.1:+69362400 MS.gene99371:CDS
GTCTGTTGCATTCCTTGAGG+AGG 0.477802 5.1:-69363093 None:intergenic
AAACCTTGTCCTGCTGCCGC+CGG 0.480799 5.1:-69361698 None:intergenic
ATTTGTGTTACTGTTGCACT+TGG 0.482874 5.1:-69360668 None:intergenic
GCATAGCATGGAACAACAAC+AGG 0.485938 5.1:+69362445 MS.gene99371:CDS
ACAGGCGGCTGCTGATGATA+AGG 0.487188 5.1:-69361563 None:intergenic
GGCTTTCGATAGCGCGGTGA+TGG 0.487676 5.1:-69360640 None:intergenic
AGAAAGAGCTGGCGAAGACT+TGG 0.491824 5.1:-69360109 None:intergenic
AGAAAGAGCCGGCGAAGACT+TGG 0.492169 5.1:-69360956 None:intergenic
GCTGCCGGGGATACAGGCTT+AGG 0.492601 5.1:-69360736 None:intergenic
AAAGTCATGCCCCAAGGAAA+GGG 0.493395 5.1:+69362594 MS.gene99371:CDS
ATGTTGTGCTTGCTGCCAAT+CGG 0.496477 5.1:+69363144 MS.gene99371:CDS
ACGGTTCTGGAAATTTCAAT+CGG 0.496809 5.1:+69361450 MS.gene99371:CDS
CCTGTGGTGACGATGCCTAA+TGG 0.500180 5.1:+69360706 MS.gene99371:CDS
GAATCCTAAGCCTGTATCCC+CGG 0.504373 5.1:+69360732 MS.gene99371:CDS
CATTTGTGTTGTTGCGCTTG+GGG 0.510276 5.1:-69361511 None:intergenic
TGCCAAACATGTTCAGCCTC+CGG 0.511829 5.1:+69361745 MS.gene99371:CDS
TGCCAAACATGTTCAGCCTC+CGG 0.513848 5.1:+69360798 MS.gene99371:CDS
GAATCCTAAGCCTGTATCCC+CGG 0.518366 5.1:+69361679 MS.gene99371:CDS
TCCCCGGCGGCAGCAGGACA+AGG 0.518402 5.1:+69361695 MS.gene99371:CDS
TCACCGCGCTATCGAAAGCC+AGG 0.521803 5.1:+69360643 MS.gene99371:CDS
GGAGTCTCATGTTGTTCCAT+AGG 0.524662 5.1:-69363222 None:intergenic
ATGCCCCAAGGAAAGGGCAT+TGG 0.524782 5.1:+69362600 MS.gene99371:CDS
TCACCATGCTATCGAAAGCC+AGG 0.525059 5.1:+69361488 MS.gene99371:CDS
TAGTGTTGATGCTCCTGTGT+TGG 0.526887 5.1:+69360924 MS.gene99371:CDS
GAAAGTCATGCCCCAAGGAA+AGG 0.527463 5.1:+69362593 MS.gene99371:CDS
GTAATTATGGTGAGGATCAG+AGG 0.529504 5.1:+69360024 None:intergenic
ATTAAATAGAAGAAATCAAA+CGG 0.530787 5.1:+69361431 MS.gene99371:intron
GGCACCGATATCATTGAGTC+GGG 0.531762 5.1:+69362476 MS.gene99371:CDS
TAATCAATAGCATAAGCATT+CGG 0.533630 5.1:-69361779 None:intergenic
CAAGGTGACCATGTGAATCA+TGG 0.533701 5.1:+69360883 MS.gene99371:CDS
GTGATTAAACAGAAATCAAA+CGG 0.535847 5.1:+69360586 MS.gene99371:intron
TGTTCCATGCTATGCTCAGA+GGG 0.536332 5.1:-69362437 None:intergenic
ACCTGAACAGAAGGAGCTAT+AGG 0.539393 5.1:-69361048 None:intergenic
AAGTGCAACAGTAACACAAA+TGG 0.541697 5.1:+69360670 MS.gene99371:CDS
TGTTGGAACCAAGTCTTCGC+CGG 0.542383 5.1:+69360948 MS.gene99371:CDS
TGATAAGGCCTCGTCGCCAC+AGG 0.544440 5.1:-69361548 None:intergenic
GGCTTTCGATAGCATGGTGA+TGG 0.547691 5.1:-69361485 None:intergenic
ATCAGAGTTTAGAATTGCAA+TGG 0.548775 5.1:-69362504 None:intergenic
AATGTTTCTGTGCCTAGTGT+TGG 0.550067 5.1:+69360168 MS.gene99371:CDS
GGGCCTGGCTTTCGATAGCA+TGG 0.552238 5.1:-69361491 None:intergenic
TTTAAGATGGCAGTGTCTTG+AGG 0.553601 5.1:-69363246 None:intergenic
GCATGGCTAGCAATTTGAGC+TGG 0.553651 5.1:-69362910 None:intergenic
ATTTAAATCAATTTGAAGGA+GGG 0.554059 5.1:-69362393 None:intergenic
AACAAACGAACCTGAACAGA+AGG 0.557127 5.1:-69361057 None:intergenic
TCCATAGGAGCAGTGACTAA+AGG 0.557140 5.1:-69363207 None:intergenic
TTCGGATCTCCTTGCACCGG+AGG 0.558249 5.1:-69361761 None:intergenic
TGTCCAATGCCCTTTCCTTG+GGG 0.558952 5.1:-69362603 None:intergenic
ATGTGAGGTGGAGGTACCCT+AGG 0.561843 5.1:-69361602 None:intergenic
ACCTGAACAGAAGGAGCTCT+AGG 0.562137 5.1:-69360201 None:intergenic
CATGTTCAGCCTCCGGTGCA+AGG 0.562364 5.1:+69360805 MS.gene99371:CDS
CATGTTCAGCCTCCGGTGCA+AGG 0.562364 5.1:+69361752 MS.gene99371:CDS
TTGGCATCATTGGCATGAGC+AGG 0.563369 5.1:-69360781 None:intergenic
AACAATCGAACCTGAACAGA+AGG 0.565912 5.1:-69360210 None:intergenic
ACCTTGTCCTGCTGCTGCCG+GGG 0.566255 5.1:-69360749 None:intergenic
CCATTAGGCATCGTCACCAC+AGG 0.566795 5.1:-69360706 None:intergenic
TTGTTCCATGCTATGCTCAG+AGG 0.567759 5.1:-69362438 None:intergenic
GAGGGATCTTGGACTGAAGC+CGG 0.570243 5.1:-69362419 None:intergenic
CATTTAAATCAATTTGAAGG+AGG 0.570848 5.1:-69362394 None:intergenic
TCCCCGGCAGCAGCAGGACA+AGG 0.572616 5.1:+69360748 MS.gene99371:CDS
GCATTCAGATCTCCTTGCAC+CGG 0.575639 5.1:-69360817 None:intergenic
TCAGGAAGTGTAGAACCGAT+TGG 0.577352 5.1:-69363315 None:intergenic
AAGTGTTGATGTTCCTGTGT+TGG 0.580284 5.1:+69360077 MS.gene99371:CDS
GCATCATTGGCATGAGCAGG+TGG 0.581815 5.1:-69360778 None:intergenic
TGGCACCGATATCATTGAGT+CGG 0.583638 5.1:+69362475 MS.gene99371:CDS
GGAACAGCAATGTGAGGTGG+AGG 0.583732 5.1:-69361611 None:intergenic
GAAGAAAAGTAATTATGGTG+AGG 0.586984 5.1:+69360016 None:intergenic
ATTGGCAGCAAGCACAACAT+AGG 0.587278 5.1:-69363141 None:intergenic
GTTTGAGCATGAGAAAGAGC+TGG 0.587648 5.1:-69360120 None:intergenic
CCAGGTGGGAAAGCATATGC+AGG 0.588904 5.1:-69361632 None:intergenic
TTAGGATAAGGTCCTGAACC+AGG 0.588996 5.1:-69361650 None:intergenic
ACACTTTGTAGCTCAACTGA+AGG 0.589388 5.1:-69363066 None:intergenic
GGAGCAACCTGACCAACACT+AGG 0.591510 5.1:-69360180 None:intergenic
GTTTGAGCATCAGAAAGAGC+CGG 0.593248 5.1:-69360967 None:intergenic
AATGTTTATGTGCCTAGTGT+TGG 0.594914 5.1:+69361015 MS.gene99371:CDS
AGATCCCTCTGAGCATAGCA+TGG 0.596307 5.1:+69362433 MS.gene99371:CDS
TGGATAAAGCAACACCAACT+GGG 0.597123 5.1:-69363295 None:intergenic
TTCAGATCTCCTTGCACCGG+AGG 0.598124 5.1:-69360814 None:intergenic
CTGTTAATTATCCAAATGGA+AGG 0.601168 5.1:+69360845 MS.gene99371:CDS
TTTGTGTTACTGTTGCACTT+GGG 0.605167 5.1:-69360667 None:intergenic
GAAGGAATTGTAGAACCGAT+TGG 0.605792 5.1:-69363159 None:intergenic
ACCTTGTCCTGCTGCCGCCG+GGG 0.606328 5.1:-69361696 None:intergenic
CGAAAATTCGGAGCAACAGG+CGG 0.606908 5.1:-69361578 None:intergenic
CACTGCCATCTTAAACAACA+AGG 0.607403 5.1:+69363254 MS.gene99371:CDS
ATTAAACAAGAATGACACAT+TGG 0.608999 5.1:+69363011 MS.gene99371:CDS
GCATCAATGGCATGAGCAGG+TGG 0.609092 5.1:-69361725 None:intergenic
GGAGCAACCTGACCAACACT+AGG 0.611273 5.1:-69361027 None:intergenic
ACCGATATCATTGAGTCGGG+TGG 0.615037 5.1:+69362479 MS.gene99371:CDS
CTATTGATTATCCAAATGGA+AGG 0.618008 5.1:+69361792 MS.gene99371:CDS
GCATTCGGATCTCCTTGCAC+CGG 0.618195 5.1:-69361764 None:intergenic
CAAAGTGTGATTCCTCCTCA+AGG 0.618896 5.1:+69363081 MS.gene99371:CDS
TTCACTTTCCTGTGGCGACG+AGG 0.622515 5.1:+69361540 MS.gene99371:CDS
TTGGCATCAATGGCATGAGC+AGG 0.623729 5.1:-69361728 None:intergenic
ATCGTCACCACAGGAAAGTG+AGG 0.627432 5.1:-69360697 None:intergenic
TCTGTCTGTTGCATTCCTTG+AGG 0.634159 5.1:-69363096 None:intergenic
CAGAAGAAAGTCATGCCCCA+AGG 0.636413 5.1:+69362588 MS.gene99371:CDS
GCAGGAACAGCAATGTGAGG+TGG 0.639750 5.1:-69361614 None:intergenic
GTGACCATGTGAATCATGGT+CGG 0.644274 5.1:+69360887 MS.gene99371:CDS
AAGATGGCAGTGTCTTGAGG+AGG 0.644314 5.1:-69363243 None:intergenic
AGGCCAAATACCCAAGAACA+AGG 0.645778 5.1:+69360865 MS.gene99371:CDS
TGACAACTTGCAAACCCAGT+TGG 0.648867 5.1:+69363281 MS.gene99371:CDS
AACACAGGAGCATCAACACT+AGG 0.653659 5.1:-69360922 None:intergenic
ATTATGGTGAGGATCAGAGG+AGG 0.653905 5.1:+69360027 None:intergenic
TGGCACGCTTCACTTTCCTG+TGG 0.655390 5.1:+69361532 MS.gene99371:CDS
GATAAGGTCCTGAACCAGGT+GGG 0.657071 5.1:-69361646 None:intergenic
AAGGAAAGGGCATTGGACAG+AGG 0.658250 5.1:+69362607 MS.gene99371:CDS
GGATCAGAGGAGGAAAGCAG+AGG 0.659593 5.1:+69360037 MS.gene99371:CDS
TGGCATGCCTCACTTTCCTG+TGG 0.662752 5.1:+69360690 MS.gene99371:CDS
GGACCTGGCTTTCGATAGCG+CGG 0.664348 5.1:-69360646 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 5.1:-69360090 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 5.1:-69360937 None:intergenic
TATGCAGGAACAGCAATGTG+AGG 0.684479 5.1:-69361617 None:intergenic
GGATAAGGTCCTGAACCAGG+TGG 0.691288 5.1:-69361647 None:intergenic
TCCTAAGCCTGTATCCCCGG+CGG 0.721703 5.1:+69361682 MS.gene99371:CDS
GATGCCGACCATGATTCACA+TGG 0.766610 5.1:-69360891 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAACTTTCAAACAT+AGG - chr5.1:69362671-69362690 None:intergenic 15.0%
!! AAATATTTCAAAAGAATTTG+TGG + chr5.1:69362876-69362895 MS.gene99371:CDS 15.0%
!! ATTAAATAGAAGAAATCAAA+CGG + chr5.1:69361431-69361450 MS.gene99371:intron 15.0%
!! ATTATGATATCTTCTTGTTA+TGG + chr5.1:69362092-69362111 MS.gene99371:intron 20.0%
!! ATTTAAATCAATTTGAAGGA+GGG - chr5.1:69362396-69362415 None:intergenic 20.0%
!! TAATTCAAATTGGATGAAAT+TGG + chr5.1:69362304-69362323 MS.gene99371:intron 20.0%
!! TGAAAGTTAAGAAAATTACT+TGG - chr5.1:69362143-69362162 None:intergenic 20.0%
!! TTCAAAAAATATTATGCATG+TGG + chr5.1:69362278-69362297 MS.gene99371:intron 20.0%
!!! ATATATAGGTTGTTTTTGAA+GGG + chr5.1:69362823-69362842 MS.gene99371:intron 20.0%
!!! ATTTTCTTAACTTTCATGAT+TGG + chr5.1:69362147-69362166 MS.gene99371:intron 20.0%
!!! CATGCATAATATTTTTTGAA+TGG - chr5.1:69362278-69362297 None:intergenic 20.0%
!!! TATATATAGGTTGTTTTTGA+AGG + chr5.1:69362822-69362841 MS.gene99371:intron 20.0%
!!! TATTTTTTGTATAGAAAGCA+TGG + chr5.1:69362346-69362365 MS.gene99371:intron 20.0%
! AAACAACGAGTCAAAAATAT+TGG + chr5.1:69361276-69361295 MS.gene99371:intron 25.0%
! ATCATATAAAAGACAAGATC+AGG - chr5.1:69361979-69361998 None:intergenic 25.0%
! ATTAAACAAGAATGACACAT+TGG + chr5.1:69363011-69363030 MS.gene99371:CDS 25.0%
! CACATTCATTCTCTATATAT+AGG + chr5.1:69362809-69362828 MS.gene99371:intron 25.0%
! CATGTGGATATAATTCAAAT+TGG + chr5.1:69362294-69362313 MS.gene99371:intron 25.0%
! CATTTAAATCAATTTGAAGG+AGG - chr5.1:69362397-69362416 None:intergenic 25.0%
! GCTCATTTAAATCAATTTGA+AGG - chr5.1:69362400-69362419 None:intergenic 25.0%
! GTGATTAAACAGAAATCAAA+CGG + chr5.1:69360586-69360605 MS.gene99371:intron 25.0%
! TAAACAACGAGTGAAAAATA+TGG + chr5.1:69360431-69360450 MS.gene99371:intron 25.0%
! TAATCAATAGCATAAGCATT+CGG - chr5.1:69361782-69361801 None:intergenic 25.0%
! TATGCTGTTAATTATCCAAA+TGG + chr5.1:69360841-69360860 MS.gene99371:CDS 25.0%
! TCTACAATATTCTTAACTCT+GGG + chr5.1:69360518-69360537 MS.gene99371:intron 25.0%
! TTCTACAATATTCTTAACTC+TGG + chr5.1:69360517-69360536 MS.gene99371:intron 25.0%
! TTCTTATGCTTGCAATAATA+TGG - chr5.1:69361214-69361233 None:intergenic 25.0%
!! GTTTGATTTCTGTTTAATCA+CGG - chr5.1:69360587-69360606 None:intergenic 25.0%
!! TATGCTATTGATTATCCAAA+TGG + chr5.1:69361788-69361807 MS.gene99371:CDS 25.0%
!! TCAAATTGATTTAAATGAGC+CGG + chr5.1:69362400-69362419 MS.gene99371:CDS 25.0%
!! TTAGAGTAATGTGATTTTGA+TGG + chr5.1:69361134-69361153 MS.gene99371:intron 25.0%
!! TTAGTGTAATGTGATTTTGA+TGG + chr5.1:69360287-69360306 MS.gene99371:intron 25.0%
!!! AGGCATAATTGATTTGATTA+AGG + chr5.1:69362186-69362205 MS.gene99371:intron 25.0%
!!! TATATAGGTTGTTTTTGAAG+GGG + chr5.1:69362824-69362843 MS.gene99371:intron 25.0%
!!! TATTGTTTTTTTCCCTTCAA+TGG + chr5.1:69361322-69361341 MS.gene99371:intron 25.0%
!!! TTGGTGGATAAAGTATTTTT+GGG - chr5.1:69362935-69362954 None:intergenic 25.0%
!!! TTTGGTGGATAAAGTATTTT+TGG - chr5.1:69362936-69362955 None:intergenic 25.0%
ACATTCTCAACATGATTCAT+AGG - chr5.1:69361000-69361019 None:intergenic 30.0%
AGAAGGAGAAAAAGAGAAAA+AGG + chr5.1:69362974-69362993 MS.gene99371:CDS 30.0%
CTCTTATGCTTGCAATAATA+TGG - chr5.1:69360368-69360387 None:intergenic 30.0%
CTGTTAATTATCCAAATGGA+AGG + chr5.1:69360845-69360864 MS.gene99371:CDS 30.0%
TGGAGTCGACAAATTTATTT+AGG + chr5.1:69361296-69361315 MS.gene99371:intron 30.0%
TTACTTTGATACCATTGAAG+TGG + chr5.1:69362023-69362042 MS.gene99371:intron 30.0%
TTTAATCACAGATCCATACA+CGG - chr5.1:69361417-69361436 None:intergenic 30.0%
! ATCAGAGTTTAGAATTGCAA+TGG - chr5.1:69362507-69362526 None:intergenic 30.0%
! CTATTGATTATCCAAATGGA+AGG + chr5.1:69361792-69361811 MS.gene99371:CDS 30.0%
! TATGGTTCTGTAATTGGTTT+GGG + chr5.1:69362110-69362129 MS.gene99371:intron 30.0%
! TCAACATGATTCATAGGTTT+TGG - chr5.1:69360994-69361013 None:intergenic 30.0%
! TCTCCATATCTTTCACATTT+TGG - chr5.1:69362954-69362973 None:intergenic 30.0%
! TCTTGTTATGGTTCTGTAAT+TGG + chr5.1:69362104-69362123 MS.gene99371:intron 30.0%
! TTATGGTTCTGTAATTGGTT+TGG + chr5.1:69362109-69362128 MS.gene99371:intron 30.0%
! TTCTCAAGTTTGTTCATATC+AGG - chr5.1:69363336-69363355 None:intergenic 30.0%
!! ACAGCTTTTATTTCCATTGA+AGG - chr5.1:69361338-69361357 None:intergenic 30.0%
!! ATTGTCCTTGTTGTTTAAGA+TGG - chr5.1:69363262-69363281 None:intergenic 30.0%
!! CAGCTTTTATTTCCATTGAA+GGG - chr5.1:69361337-69361356 None:intergenic 30.0%
!!! ATTGTTTTTTATCCCTTCGA+TGG + chr5.1:69360480-69360499 MS.gene99371:intron 30.0%
!!! CATCATTTTTTGAGTAAACC+GGG + chr5.1:69362209-69362228 MS.gene99371:intron 30.0%
!!! GCATCATTTTTTGAGTAAAC+CGG + chr5.1:69362208-69362227 MS.gene99371:intron 30.0%
!!! TCACCTTGTTTTTGGATATT+TGG - chr5.1:69361818-69361837 None:intergenic 30.0%
AAACAGAAATCAAACGGTTC+TGG + chr5.1:69360592-69360611 MS.gene99371:intron 35.0%
AAGTGCAACAGTAACACAAA+TGG + chr5.1:69360670-69360689 MS.gene99371:CDS 35.0%
AATGTTTATGTGCCTAGTGT+TGG + chr5.1:69361015-69361034 MS.gene99371:CDS 35.0%
ACATTCTCAACACGATTCAT+AGG - chr5.1:69360153-69360172 None:intergenic 35.0%
AGGCCAAATATCCAAAAACA+AGG + chr5.1:69361812-69361831 MS.gene99371:CDS 35.0%
CCACCAAAATGTGAAAGATA+TGG + chr5.1:69362948-69362967 MS.gene99371:CDS 35.0%
GAAACTTAACCAAGAAAACG+AGG - chr5.1:69361912-69361931 None:intergenic 35.0%
GCAACTAAAATCCACTTCAA+TGG - chr5.1:69362037-69362056 None:intergenic 35.0%
GGGATGAAAAAACATGGAAA+GGG + chr5.1:69362844-69362863 MS.gene99371:CDS 35.0%
GTCAATGAAGTTCATTCACA+TGG - chr5.1:69361841-69361860 None:intergenic 35.0%
TAGAAGAAATCAAACGGTTC+TGG + chr5.1:69361437-69361456 MS.gene99371:intron 35.0%
TGTGAAAGATATGGAGAAGA+AGG + chr5.1:69362957-69362976 MS.gene99371:CDS 35.0%
TTGAAGGGGATGAAAAAACA+TGG + chr5.1:69362838-69362857 MS.gene99371:CDS 35.0%
TTTAATCACGGATCCATACA+CGG - chr5.1:69360575-69360594 None:intergenic 35.0%
! AATCGGTTCTACAATTCCTT+CGG + chr5.1:69363161-69363180 MS.gene99371:CDS 35.0%
! ATTTGTGTTACTGTTGCACT+TGG - chr5.1:69360671-69360690 None:intergenic 35.0%
! CCATATCTTTCACATTTTGG+TGG - chr5.1:69362951-69362970 None:intergenic 35.0%
! TCAACACGATTCATAGGTTT+TGG - chr5.1:69360147-69360166 None:intergenic 35.0%
! TTGGCTAGTTCATCTGATTA+AGG + chr5.1:69362166-69362185 MS.gene99371:intron 35.0%
! TTTGTGTTACTGTTGCACTT+GGG - chr5.1:69360670-69360689 None:intergenic 35.0%
!! ACAGCTTTTATTTCCATCGA+AGG - chr5.1:69360496-69360515 None:intergenic 35.0%
!! ACGGTTCTGGAAATTTCAAT+CGG + chr5.1:69361450-69361469 MS.gene99371:CDS 35.0%
!! AGATTTTAGCCTCGTTTTCT+TGG + chr5.1:69361900-69361919 MS.gene99371:intron 35.0%
!! CAGCTTTTATTTCCATCGAA+GGG - chr5.1:69360495-69360514 None:intergenic 35.0%
!! CTGTAATTGGTTTGGGTAAT+TGG + chr5.1:69362117-69362136 MS.gene99371:intron 35.0%
!! TTGGTGTTGCTTTATCCAAT+CGG + chr5.1:69363300-69363319 MS.gene99371:CDS 35.0%
!!! GGATAAAGTATTTTTGGGCA+TGG - chr5.1:69362930-69362949 None:intergenic 35.0%
AACAAACGAACCTGAACAGA+AGG - chr5.1:69361060-69361079 None:intergenic 40.0%
AACAATCGAACCTGAACAGA+AGG - chr5.1:69360213-69360232 None:intergenic 40.0%
ACACTTTGTAGCTCAACTGA+AGG - chr5.1:69363069-69363088 None:intergenic 40.0%
AGATCCATACACGGAAAATC+AGG - chr5.1:69361408-69361427 None:intergenic 40.0%
CACTGCCATCTTAAACAACA+AGG + chr5.1:69363254-69363273 MS.gene99371:CDS 40.0%
CTGAACATGTTTGGCATCAA+TGG - chr5.1:69361741-69361760 None:intergenic 40.0%
CTGAACATGTTTGGCATCAT+TGG - chr5.1:69360794-69360813 None:intergenic 40.0%
GAACAACAACAGGAGAAAAC+TGG + chr5.1:69362455-69362474 MS.gene99371:CDS 40.0%
GAAGGAATTGTAGAACCGAT+TGG - chr5.1:69363162-69363181 None:intergenic 40.0%
GGATTCTCACCATTAGGATA+AGG - chr5.1:69361665-69361684 None:intergenic 40.0%
GGGGATGAAAAAACATGGAA+AGG + chr5.1:69362843-69362862 MS.gene99371:CDS 40.0%
TCACCTTGTTCTTGGGTATT+TGG - chr5.1:69360871-69360890 None:intergenic 40.0%
TGGATAAAGCAACACCAACT+GGG - chr5.1:69363298-69363317 None:intergenic 40.0%
TTGGATAAAGCAACACCAAC+TGG - chr5.1:69363299-69363318 None:intergenic 40.0%
! AATGTTTCTGTGCCTAGTGT+TGG + chr5.1:69360168-69360187 MS.gene99371:CDS 40.0%
! GGTGATGGCATCTTATTCTT+CGG - chr5.1:69360628-69360647 None:intergenic 40.0%
! TGGATATTTGGCCTTCCATT+TGG - chr5.1:69361806-69361825 None:intergenic 40.0%
! TTTAAGATGGCAGTGTCTTG+AGG - chr5.1:69363249-69363268 None:intergenic 40.0%
! TTTGCCTGATTTTCCGTGTA+TGG + chr5.1:69360559-69360578 MS.gene99371:intron 40.0%
!! AAGATTCTAGCTTAACCCTG+TGG + chr5.1:69361932-69361951 MS.gene99371:intron 40.0%
!! AAGTGTTGATGTTCCTGTGT+TGG + chr5.1:69360077-69360096 MS.gene99371:CDS 40.0%
!! AATACCCAAAAAAGCACCAC+AGG - chr5.1:69361951-69361970 None:intergenic 40.0%
!! ATACCCAAAAAAGCACCACA+GGG - chr5.1:69361950-69361969 None:intergenic 40.0%
!!! TAACCCTGTGGTGCTTTTTT+GGG + chr5.1:69361944-69361963 MS.gene99371:intron 40.0%
!!! TCACATGGTCACCTTGTTTT+TGG - chr5.1:69361826-69361845 None:intergenic 40.0%
!!! TTAACCCTGTGGTGCTTTTT+TGG + chr5.1:69361943-69361962 MS.gene99371:intron 40.0%
AAAAACATGGAAAGGGACGC+TGG + chr5.1:69362851-69362870 MS.gene99371:CDS 45.0%
AAAGTCATGCCCCAAGGAAA+GGG + chr5.1:69362594-69362613 MS.gene99371:CDS 45.0%
ACCACCCGACTCAATGATAT+CGG - chr5.1:69362483-69362502 None:intergenic 45.0%
ACCTGAACAGAAGGAGCTAT+AGG - chr5.1:69361051-69361070 None:intergenic 45.0%
AGGCCAAATACCCAAGAACA+AGG + chr5.1:69360865-69360884 MS.gene99371:CDS 45.0%
ATTGGCAGCAAGCACAACAT+AGG - chr5.1:69363144-69363163 None:intergenic 45.0%
CAAAGTGTGATTCCTCCTCA+AGG + chr5.1:69363081-69363100 MS.gene99371:CDS 45.0%
CAAGGTGACCATGTGAATCA+TGG + chr5.1:69360883-69360902 MS.gene99371:CDS 45.0%
CACATGGTCACCTTGTTCTT+GGG - chr5.1:69360878-69360897 None:intergenic 45.0%
GCATAGCATGGAACAACAAC+AGG + chr5.1:69362445-69362464 MS.gene99371:CDS 45.0%
GGAGTCTCATGTTGTTCCAT+AGG - chr5.1:69363225-69363244 None:intergenic 45.0%
GGATCCATACACGGAAAATC+AGG - chr5.1:69360566-69360585 None:intergenic 45.0%
GGCTTAGGATTCTCACCATT+AGG - chr5.1:69361671-69361690 None:intergenic 45.0%
GGTACCCTAGGACGAAAATT+CGG - chr5.1:69361593-69361612 None:intergenic 45.0%
GGTTCAGGACCTTATCCTAA+TGG + chr5.1:69361653-69361672 MS.gene99371:CDS 45.0%
GTGACCATGTGAATCATGGT+CGG + chr5.1:69360887-69360906 MS.gene99371:CDS 45.0%
GTTTGAGCATCAGAAAGAGC+CGG - chr5.1:69360970-69360989 None:intergenic 45.0%
GTTTGAGCATGAGAAAGAGC+TGG - chr5.1:69360123-69360142 None:intergenic 45.0%
TATGCAGGAACAGCAATGTG+AGG - chr5.1:69361620-69361639 None:intergenic 45.0%
TCACATGGTCACCTTGTTCT+TGG - chr5.1:69360879-69360898 None:intergenic 45.0%
TCCATAGGAGCAGTGACTAA+AGG - chr5.1:69363210-69363229 None:intergenic 45.0%
TCCTATAGCTCCTTCTGTTC+AGG + chr5.1:69361047-69361066 MS.gene99371:CDS 45.0%
TCCTTTAGTCACTGCTCCTA+TGG + chr5.1:69363206-69363225 MS.gene99371:CDS 45.0%
TCTGTCTGTTGCATTCCTTG+AGG - chr5.1:69363099-69363118 None:intergenic 45.0%
TGACAACTTGCAAACCCAGT+TGG + chr5.1:69363281-69363300 MS.gene99371:CDS 45.0%
TGTTCCATGCTATGCTCAGA+GGG - chr5.1:69362440-69362459 None:intergenic 45.0%
TTAGGATAAGGTCCTGAACC+AGG - chr5.1:69361653-69361672 None:intergenic 45.0%
TTGGTTCCAACAACCAACAC+AGG - chr5.1:69360093-69360112 None:intergenic 45.0%
TTGTTCCATGCTATGCTCAG+AGG - chr5.1:69362441-69362460 None:intergenic 45.0%
! ATGTTGTGCTTGCTGCCAAT+CGG + chr5.1:69363144-69363163 MS.gene99371:CDS 45.0%
! CATTTGTGTTGTTGCGCTTG+GGG - chr5.1:69361514-69361533 None:intergenic 45.0%
! CCATTTGTGTTGTTGCGCTT+GGG - chr5.1:69361515-69361534 None:intergenic 45.0%
! GCGAGTCGACAAATCTGTTT+TGG + chr5.1:69360453-69360472 MS.gene99371:intron 45.0%
! TCAGGAAGTGTAGAACCGAT+TGG - chr5.1:69363318-69363337 None:intergenic 45.0%
! TGCTCCGAATTTTCGTCCTA+GGG + chr5.1:69361586-69361605 MS.gene99371:CDS 45.0%
! TGGGTATTTGGCCTTCCATT+TGG - chr5.1:69360859-69360878 None:intergenic 45.0%
! TTGCTCCGAATTTTCGTCCT+AGG + chr5.1:69361585-69361604 MS.gene99371:CDS 45.0%
!! AACACAGGAGCATCAACACT+AGG - chr5.1:69360925-69360944 None:intergenic 45.0%
!! GATGTTCCTGTGTTGGTTGT+TGG + chr5.1:69360084-69360103 MS.gene99371:CDS 45.0%
!! TAGTGTTGATGCTCCTGTGT+TGG + chr5.1:69360924-69360943 MS.gene99371:CDS 45.0%
!! TCGTTTTGTTGCTGAACCGA+AGG - chr5.1:69363180-69363199 None:intergenic 45.0%
!! TGGCACCGATATCATTGAGT+CGG + chr5.1:69362475-69362494 MS.gene99371:CDS 45.0%
!! TTATGTGCCTAGTGTTGGTC+AGG + chr5.1:69361020-69361039 MS.gene99371:CDS 45.0%
AAGATGGCAGTGTCTTGAGG+AGG - chr5.1:69363246-69363265 None:intergenic 50.0%
ACCGATATCATTGAGTCGGG+TGG + chr5.1:69362479-69362498 MS.gene99371:CDS 50.0%
ACCTGAACAGAAGGAGCTCT+AGG - chr5.1:69360204-69360223 None:intergenic 50.0%
AGAAAGAGCTGGCGAAGACT+TGG - chr5.1:69360112-69360131 None:intergenic 50.0%
AGATCCCTCTGAGCATAGCA+TGG + chr5.1:69362433-69362452 MS.gene99371:CDS 50.0%
ATCGTCACCACAGGAAAGTG+AGG - chr5.1:69360700-69360719 None:intergenic 50.0%
CAGAAGAAAGTCATGCCCCA+AGG + chr5.1:69362588-69362607 MS.gene99371:CDS 50.0%
CCCAAGCGCAACAACACAAA+TGG + chr5.1:69361512-69361531 MS.gene99371:CDS 50.0%
CGAAAATTCGGAGCAACAGG+CGG - chr5.1:69361581-69361600 None:intergenic 50.0%
CTGTCCAATGCCCTTTCCTT+GGG - chr5.1:69362607-69362626 None:intergenic 50.0%
CTTGGGGCATGACTTTCTTC+TGG - chr5.1:69362590-69362609 None:intergenic 50.0%
GAAAGTCATGCCCCAAGGAA+AGG + chr5.1:69362593-69362612 MS.gene99371:CDS 50.0%
GAATCCTAAGCCTGTATCCC+CGG + chr5.1:69360732-69360751 MS.gene99371:CDS 50.0%
GAGTAAACCGGGTGATGCTA+GGG + chr5.1:69362220-69362239 MS.gene99371:intron 50.0%
GATAAGGTCCTGAACCAGGT+GGG - chr5.1:69361649-69361668 None:intergenic 50.0%
GATGCCGACCATGATTCACA+TGG - chr5.1:69360894-69360913 None:intergenic 50.0%
GCATGGCTAGCAATTTGAGC+TGG - chr5.1:69362913-69362932 None:intergenic 50.0%
GCATTCAGATCTCCTTGCAC+CGG - chr5.1:69360820-69360839 None:intergenic 50.0%
GGACGAAAATTCGGAGCAAC+AGG - chr5.1:69361584-69361603 None:intergenic 50.0%
GGCTTAGGATTCTCGCCATT+AGG - chr5.1:69360724-69360743 None:intergenic 50.0%
GGCTTTCGATAGCATGGTGA+TGG - chr5.1:69361488-69361507 None:intergenic 50.0%
GTCTGTTGCATTCCTTGAGG+AGG - chr5.1:69363096-69363115 None:intergenic 50.0%
TATGCTTTCCCACCTGGTTC+AGG + chr5.1:69361638-69361657 MS.gene99371:CDS 50.0%
TCACCATGCTATCGAAAGCC+AGG + chr5.1:69361488-69361507 MS.gene99371:CDS 50.0%
TCCTAGAGCTCCTTCTGTTC+AGG + chr5.1:69360200-69360219 MS.gene99371:CDS 50.0%
TCTGTCCAATGCCCTTTCCT+TGG - chr5.1:69362608-69362627 None:intergenic 50.0%
TCTTAGTCCCTAGCATCACC+CGG - chr5.1:69362230-69362249 None:intergenic 50.0%
TGAGAAGATGCGCAGCTTGT+TGG + chr5.1:69363350-69363369 MS.gene99371:CDS 50.0%
TGAGTAAACCGGGTGATGCT+AGG + chr5.1:69362219-69362238 MS.gene99371:intron 50.0%
TGCCAAACATGTTCAGCCTC+CGG + chr5.1:69360798-69360817 MS.gene99371:CDS 50.0%
TGCTATGCTCAGAGGGATCT+TGG - chr5.1:69362433-69362452 None:intergenic 50.0%
TGTCCAATGCCCTTTCCTTG+GGG - chr5.1:69362606-69362625 None:intergenic 50.0%
TGTTGGAACCAAGTCTTCGC+CGG + chr5.1:69360101-69360120 MS.gene99371:CDS 50.0%
TTACTGTTGCACTTGGGACC+TGG - chr5.1:69360664-69360683 None:intergenic 50.0%
TTGGCATCAATGGCATGAGC+AGG - chr5.1:69361731-69361750 None:intergenic 50.0%
TTGGCATCATTGGCATGAGC+AGG - chr5.1:69360784-69360803 None:intergenic 50.0%
! GCCATTTGTGTTGTTGCGCT+TGG - chr5.1:69361516-69361535 None:intergenic 50.0%
!! AAGGAAAGGGCATTGGACAG+AGG + chr5.1:69362607-69362626 MS.gene99371:CDS 50.0%
!! GATGCTCCTGTGTTGGTTGT+TGG + chr5.1:69360931-69360950 MS.gene99371:CDS 50.0%
!! GGCACCGATATCATTGAGTC+GGG + chr5.1:69362476-69362495 MS.gene99371:CDS 50.0%
!! TTCTGTGCCTAGTGTTGGTC+AGG + chr5.1:69360173-69360192 MS.gene99371:CDS 50.0%
AAACCTTGTCCTGCTGCTGC+CGG - chr5.1:69360754-69360773 None:intergenic 55.0%
ACAGGCGGCTGCTGATGATA+AGG - chr5.1:69361566-69361585 None:intergenic 55.0%
AGAAAGAGCCGGCGAAGACT+TGG - chr5.1:69360959-69360978 None:intergenic 55.0%
CACCGGAGGCTGAACATGTT+TGG - chr5.1:69360803-69360822 None:intergenic 55.0%
CCTGCATATGCTTTCCCACC+TGG + chr5.1:69361632-69361651 MS.gene99371:CDS 55.0%
GAGGGATCTTGGACTGAAGC+CGG - chr5.1:69362422-69362441 None:intergenic 55.0%
GCAGGAACAGCAATGTGAGG+TGG - chr5.1:69361617-69361636 None:intergenic 55.0%
GCATCAATGGCATGAGCAGG+TGG - chr5.1:69361728-69361747 None:intergenic 55.0%
GCATCATTGGCATGAGCAGG+TGG - chr5.1:69360781-69360800 None:intergenic 55.0%
GCATTCGGATCTCCTTGCAC+CGG - chr5.1:69361767-69361786 None:intergenic 55.0%
GGAACAGCAATGTGAGGTGG+AGG - chr5.1:69361614-69361633 None:intergenic 55.0%
GGAGCAACCTGACCAACACT+AGG - chr5.1:69360183-69360202 None:intergenic 55.0%
GGATAAGGTCCTGAACCAGG+TGG - chr5.1:69361650-69361669 None:intergenic 55.0%
GGATCAGAGGAGGAAAGCAG+AGG + chr5.1:69360037-69360056 MS.gene99371:CDS 55.0%
TGGCACGCTTCACTTTCCTG+TGG + chr5.1:69361532-69361551 MS.gene99371:CDS 55.0%
TGGCATGCCTCACTTTCCTG+TGG + chr5.1:69360690-69360709 MS.gene99371:CDS 55.0%
TTCACTTTCCTGTGGCGACG+AGG + chr5.1:69361540-69361559 MS.gene99371:CDS 55.0%
TTCAGATCTCCTTGCACCGG+AGG - chr5.1:69360817-69360836 None:intergenic 55.0%
! ATGCCCCAAGGAAAGGGCAT+TGG + chr5.1:69362600-69362619 MS.gene99371:CDS 55.0%
! CCAGGTGGGAAAGCATATGC+AGG - chr5.1:69361635-69361654 None:intergenic 55.0%
! CCATTAGGCATCGTCACCAC+AGG - chr5.1:69360709-69360728 None:intergenic 55.0%
! CCTGTGGTGACGATGCCTAA+TGG + chr5.1:69360706-69360725 MS.gene99371:CDS 55.0%
!! ATGTGAGGTGGAGGTACCCT+AGG - chr5.1:69361605-69361624 None:intergenic 55.0%
AAACCTTGTCCTGCTGCCGC+CGG - chr5.1:69361701-69361720 None:intergenic 60.0%
AACCTTGTCCTGCTGCTGCC+GGG - chr5.1:69360753-69360772 None:intergenic 60.0%
CATGTTCAGCCTCCGGTGCA+AGG + chr5.1:69360805-69360824 MS.gene99371:CDS 60.0%
GGCTTTCGATAGCGCGGTGA+TGG - chr5.1:69360643-69360662 None:intergenic 60.0%
TCACCGCGCTATCGAAAGCC+AGG + chr5.1:69360643-69360662 MS.gene99371:CDS 60.0%
TCCTAAGCCTGTATCCCCGG+CGG + chr5.1:69360735-69360754 MS.gene99371:CDS 60.0%
TGATAAGGCCTCGTCGCCAC+AGG - chr5.1:69361551-69361570 None:intergenic 60.0%
TTCGGATCTCCTTGCACCGG+AGG - chr5.1:69361764-69361783 None:intergenic 60.0%
! GGACCTGGCTTTCGATAGCG+CGG - chr5.1:69360649-69360668 None:intergenic 60.0%
! GGGCCTGGCTTTCGATAGCA+TGG - chr5.1:69361494-69361513 None:intergenic 60.0%
AACCTTGTCCTGCTGCCGCC+GGG - chr5.1:69361700-69361719 None:intergenic 65.0%
ACCTTGTCCTGCTGCTGCCG+GGG - chr5.1:69360752-69360771 None:intergenic 65.0%
GCTGCCGGGGATACAGGCTT+AGG - chr5.1:69360739-69360758 None:intergenic 65.0%
! GTGTTGTTGCGCTTGGGGCC+TGG - chr5.1:69361509-69361528 None:intergenic 65.0%
ACCTTGTCCTGCTGCCGCCG+GGG - chr5.1:69361699-69361718 None:intergenic 70.0%
CCTGCTGCTGCCGGGGATAC+AGG - chr5.1:69360745-69360764 None:intergenic 70.0%
CCTGTATCCCCGGCAGCAGC+AGG + chr5.1:69360742-69360761 MS.gene99371:CDS 70.0%
GCCGCCGGGGATACAGGCTT+AGG - chr5.1:69361686-69361705 None:intergenic 70.0%
TCCCCGGCAGCAGCAGGACA+AGG + chr5.1:69360748-69360767 MS.gene99371:CDS 70.0%
CCTGCTGCCGCCGGGGATAC+AGG - chr5.1:69361692-69361711 None:intergenic 75.0%
CCTGTATCCCCGGCGGCAGC+AGG + chr5.1:69361689-69361708 MS.gene99371:CDS 75.0%
TCCCCGGCGGCAGCAGGACA+AGG + chr5.1:69361695-69361714 MS.gene99371:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 69360030 69363386 69360030 ID=MS.gene99371
chr5.1 mRNA 69360030 69363386 69360030 ID=MS.gene99371.t1;Parent=MS.gene99371
chr5.1 exon 69360030 69360221 69360030 ID=MS.gene99371.t1.exon1;Parent=MS.gene99371.t1
chr5.1 CDS 69360030 69360221 69360030 ID=cds.MS.gene99371.t1;Parent=MS.gene99371.t1
chr5.1 exon 69360598 69361068 69360598 ID=MS.gene99371.t1.exon2;Parent=MS.gene99371.t1
chr5.1 CDS 69360598 69361068 69360598 ID=cds.MS.gene99371.t1;Parent=MS.gene99371.t1
chr5.1 exon 69361440 69361833 69361440 ID=MS.gene99371.t1.exon3;Parent=MS.gene99371.t1
chr5.1 CDS 69361440 69361833 69361440 ID=cds.MS.gene99371.t1;Parent=MS.gene99371.t1
chr5.1 exon 69362360 69362639 69362360 ID=MS.gene99371.t1.exon4;Parent=MS.gene99371.t1
chr5.1 CDS 69362360 69362639 69362360 ID=cds.MS.gene99371.t1;Parent=MS.gene99371.t1
chr5.1 exon 69362831 69363386 69362831 ID=MS.gene99371.t1.exon5;Parent=MS.gene99371.t1
chr5.1 CDS 69362831 69363386 69362831 ID=cds.MS.gene99371.t1;Parent=MS.gene99371.t1
Gene Sequence

>MS.gene99371

ATGGTGAGGATCAGAGGAGGAAAGCAGAGGAAAAGTGTTGATGAGAAAAGTGTTGATGTTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCAGCTCTTTCTCATGCTCAAACTCCAAAACCTATGAATCGTGTTGAGAATGTTTCTGTGCCTAGTGTTGGTCAGGTTGCTCCTAGAGCTCCTTCTGTTCAGGTTCGATTGTTCTTTACTGTAATTCGATAGCATTGTCGTTTGAGAATGAAATGCAAAAGATCATGTTAGTGTAATGTGATTTTGATGGAGTTTTTTTGTTGAGATAAACATGTTTTGTATTGATCTATTTTTCATGATTTTAGCCATATTATTGCAAGCATAAGAGTTGATTTTGATAGAGTAACAATTAAAATATGATGTGTTAGAATTAAACAACGAGTGAAAAATATGGCGAGTCGACAAATCTGTTTTGGACATATTGTTTTTTATCCCTTCGATGGAAATAAAAGCTGTATTCTACAATATTCTTAACTCTGGGTTTGACTATTTTTTCGTGTTTGCCTGATTTTCCGTGTATGGATCCGTGATTAAACAGAAATCAAACGGTTCTGGAAACTTCAATCCGAAGAATAAGATGCCATCACCGCGCTATCGAAAGCCAGGTCCCAAGTGCAACAGTAACACAAATGGCATGCCTCACTTTCCTGTGGTGACGATGCCTAATGGCGAGAATCCTAAGCCTGTATCCCCGGCAGCAGCAGGACAAGGTTTTACTCCACCTGCTCATGCCAATGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCTGAATGCTTATGCTGTTAATTATCCAAATGGAAGGCCAAATACCCAAGAACAAGGTGACCATGTGAATCATGGTCGGCATCATCAAAGACCTAGTGTTGATGCTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCGGCTCTTTCTGATGCTCAAACTCCAAAACCTATGAATCATGTTGAGAATGTTTATGTGCCTAGTGTTGGTCAGGTTGCTCCTATAGCTCCTTCTGTTCAGGTTCGTTTGTTCTTTATTGTAATTTGATAGCATTGTCGTTTGAGAATGAAATGCAAAAGATCATGTTAGAGTAATGTGATTTTGATGGAGTTTTTTTGTTAAGATAAACATGATTTGTATTGATCTATTTTTCATGATTTAGCCATATTATTGCAAGCATAAGAATTGTATTATTGAGTAACAATTAAAATATGACGTGTTAGAATTAAACAACGAGTCAAAAATATTGGAGTCGACAAATTTATTTAGGACATATTGTTTTTTTCCCTTCAATGGAAATAAAAGCTGTATTCTACAATATTCTTAACTCTGGGTTTGACTATTTTTTCGTGTTTGCCTGATTTTCCGTGTATGGATCTGTGATTAAATAGAAGAAATCAAACGGTTCTGGAAATTTCAATCGGATGAATAAGCTGCCATCACCATGCTATCGAAAGCCAGGCCCCAAGCGCAACAACACAAATGGCACGCTTCACTTTCCTGTGGCGACGAGGCCTTATCATCAGCAGCCGCCTGTTGCTCCGAATTTTCGTCCTAGGGTACCTCCACCTCACATTGCTGTTCCTGCATATGCTTTCCCACCTGGTTCAGGACCTTATCCTAATGGTGAGAATCCTAAGCCTGTATCCCCGGCGGCAGCAGGACAAGGTTTTACTCCACCTGCTCATGCCATTGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCCGAATGCTTATGCTATTGATTATCCAAATGGAAGGCCAAATATCCAAAAACAAGGTGACCATGTGAATGAACTTCATTGACTTTATGTAATGACTTTTTTGTTACTGTTACTGTTTTTGAAGATTTTAGCCTCGTTTTCTTGGTTAAGTTTCAAGATTCTAGCTTAACCCTGTGGTGCTTTTTTGGGTATTGTTTTCCTGATCTTGTCTTTTATATGATTAATATAACTAATCTTCAATATTCTTACTTTGATACCATTGAAGTGGATTTTAGTTGCAACATGATGTTTTACGATGAGTGTTTTTTATTGTCATTATGATATCTTCTTGTTATGGTTCTGTAATTGGTTTGGGTAATTGGCCAAGTAATTTTCTTAACTTTCATGATTGGCTAGTTCATCTGATTAAGGCATAATTGATTTGATTAAGGCATCATTTTTTGAGTAAACCGGGTGATGCTAGGGACTAAGAATTAAGAAGATTTAGCATATTTTTACCATTCAAAAAATATTATGCATGTGGATATAATTCAAATTGGATGAAATTGGTTTTGAATTCTTATAGTTGTATTTTTTGTATAGAAAGCATGGAAGAAAGAAAAAGTATACAATCATCCCTCCTTCAAATTGATTTAAATGAGCCGGCTTCAGTCCAAGATCCCTCTGAGCATAGCATGGAACAACAACAGGAGAAAACTGGCACCGATATCATTGAGTCGGGTGGTGCCATTGCAATTCTAAACTCTGATGATAATAACGTCACAACTCTAAACTCTGACGAAAATAACTTAATTCAAGCTGAGTCAGTACCAGAAGAAAGTCATGCCCCAAGGAAAGGGCATTGGACAGAGGATGAACACAAGTAAGTATGCAGTCTATGTTAATGTTAACCTATGTTTGAAAGTTATTTTTTTTATTTTATTGAGTTAAATATGTGTTTAGTTCTTATTAAATTACAGATTTTAACATCTATAAAATTATTCTGTTTTTTGACAATTGTTTTCATATTATTTAGTTGAATTTGAATATTTCACATTCATTCTCTATATATAGGTTGTTTTTGAAGGGGATGAAAAAACATGGAAAGGGACGCTGGAAAAATATTTCAAAAGAATTTGTGGTGACAAAAACTCCAGCTCAAATTGCTAGCCATGCCCAAAAATACTTTATCCACCAAAATGTGAAAGATATGGAGAAGAAGGAGAAAAAGAGAAAAAGGATTCACGACACAACATTAAACAAGAATGACACATTGGTCACTGTCGCTGTTGATCAAGAAGATGAGATTCCTTCAGTTGAGCTACAAAGTGTGATTCCTCCTCAAGGAATGCAACAGACAGAAACACAACAGAATGAGATTTCTCCTATGTTGTGCTTGCTGCCAATCGGTTCTACAATTCCTTCGGTTCAGCAACAAAACGAGCTTACTCCTTTAGTCACTGCTCCTATGGAACAACATGAGACTCCTCCTCAAGACACTGCCATCTTAAACAACAAGGACAATGACAACTTGCAAACCCAGTTGGTGTTGCTTTATCCAATCGGTTCTACACTTCCTGATATGAACAAACTTGAGAAGATGCGCAGCTTGTTGGCAAAAGAACTTTGA
Protein sequence

>MS.gene99371.t1

MVRIRGGKQRKSVDEKSVDVPVLVVGTKSSPALSHAQTPKPMNRVENVSVPSVGQVAPRAPSVQKSNGSGNFNPKNKMPSPRYRKPGPKCNSNTNGMPHFPVVTMPNGENPKPVSPAAAGQGFTPPAHANDAKHVQPPVQGDLNAYAVNYPNGRPNTQEQGDHVNHGRHHQRPSVDAPVLVVGTKSSPALSDAQTPKPMNHVENVYVPSVGQVAPIAPSVQKKSNGSGNFNRMNKLPSPCYRKPGPKRNNTNGTLHFPVATRPYHQQPPVAPNFRPRVPPPHIAVPAYAFPPGSGPYPNGENPKPVSPAAAGQGFTPPAHAIDAKHVQPPVQGDPNAYAIDYPNGRPNIQKQESMEERKSIQSSLLQIDLNEPASVQDPSEHSMEQQQEKTGTDIIESGGAIAILNSDDNNVTTLNSDENNLIQAESVPEESHAPRKGHWTEDEHKLFLKGMKKHGKGRWKNISKEFVVTKTPAQIASHAQKYFIHQNVKDMEKKEKKRKRIHDTTLNKNDTLVTVAVDQEDEIPSVELQSVIPPQGMQQTETQQNEISPMLCLLPIGSTIPSVQQQNELTPLVTAPMEQHETPPQDTAILNNKDNDNLQTQLVLLYPIGSTLPDMNKLEKMRSLLAKEL