AlfalfaGEDB | MS.gene99402

M. sativa cultivar XinJiangDaYe / MS.gene99402

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF04434.20 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99402.t1	XP_024640285.1	96.1	951	21	2	1	951	1	935	0.00E+00	1578.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99402.t1	Q9ZVC9	50.9	892	329	11	1	888	1	787	1.1e-239	831.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99402.t1	A0A396HY69	96.1	951	21	2	1	951	1	935	0.0e+00	1578.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene99402.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99402.t1	MTR_6g051425	30.508	295	167	9	47	322	16	291	8.94e-40	150
MS.gene99402.t1	MTR_4g035820	29.091	275	145	8	48	297	75	324	6.54e-22	102
MS.gene99402.t1	MTR_2g098880	36.066	122	63	1	47	153	60	181	1.17e-17	84.3
MS.gene99402.t1	MTR_2g098880	36.066	122	63	1	47	153	72	193	1.46e-17	84.3
MS.gene99402.t1	MTR_7g087480	47.423	97	48	1	806	899	184	280	6.75e-17	82.8
MS.gene99402.t1	MTR_3g006370	40.566	106	49	1	47	138	49	154	1.88e-15	77.0
MS.gene99402.t1	MTR_4g067290	39.216	102	50	2	47	136	55	156	4.57e-15	76.3
MS.gene99402.t1	MTR_4g067290	39.216	102	50	2	47	136	55	156	4.92e-15	76.3
MS.gene99402.t1	MTR_4g067290	39.216	102	50	2	47	136	73	174	6.76e-15	76.3
MS.gene99402.t1	MTR_4g067290	39.216	102	50	2	47	136	75	176	7.05e-15	76.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99402.t1	AT2G27110	50.885	904	364	17	1	890	1	838	0.0	856
MS.gene99402.t1	AT2G27110	62.329	146	54	1	806	950	705	850	3.13e-46	179
MS.gene99402.t1	AT2G27110	50.885	904	364	17	1	890	1	838	0.0	856
MS.gene99402.t1	AT2G27110	62.329	146	54	1	806	950	705	850	3.13e-46	179
MS.gene99402.t1	AT2G27110	54.036	731	266	13	168	887	19	690	0.0	757
MS.gene99402.t1	AT2G27110	62.329	146	54	1	806	950	560	705	8.57e-47	179
MS.gene99402.t1	AT4G38180	41.618	680	356	7	24	681	49	709	0.0	561
MS.gene99402.t1	AT4G38170	48.409	440	220	3	230	666	21	456	1.78e-144	441
MS.gene99402.t1	AT3G06250	37.261	628	342	9	41	666	183	760	1.70e-123	393
MS.gene99402.t1	AT3G06250	39.560	91	55	0	47	137	27	117	1.25e-15	82.0

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Find 220 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTTATGTCTTGCGAGA+AGG	0.580603	5.1:-69054830	MS.gene99402:CDS
AAACTCGGGATCTCATGCTG+AGG	0.664329	5.1:-69055830	MS.gene99402:CDS
AAAGTGCAGGCTGAAAACCC+TGG	0.650722	5.1:-69055214	MS.gene99402:CDS
AAAGTTGCGAGGCGATGATT+AGG	0.441916	5.1:-69055600	MS.gene99402:CDS
AACTCGCTGACGAGACACTG+GGG	0.704142	5.1:+69053605	None:intergenic
AACTCGCTGACGAGGCACTG+GGG	0.710997	5.1:+69053671	None:intergenic
AACTCGCTGACGAGGCATTG+GGG	0.657743	5.1:+69053638	None:intergenic
AACTCGGGATCTCATGCTGA+GGG	0.600343	5.1:-69055829	MS.gene99402:CDS
AACTTGCTTACGTGCCACTG+GGG	0.680413	5.1:+69053704	None:intergenic
AAGGATGACTGAAAGTTGCG+AGG	0.682372	5.1:-69055611	MS.gene99402:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTGGACTTGTAATATCA+GGG	-	chr5.1:69054460-69054479	MS.gene99402:CDS	30.0%
ACAAAATCATTTGACCATGA+TGG	+	chr5.1:69051775-69051794	None:intergenic	30.0%
ACTTTCAACAACAGCAAATA+AGG	-	chr5.1:69054080-69054099	MS.gene99402:CDS	30.0%
AGCAATGACACTTTCTTAAA+AGG	-	chr5.1:69055233-69055252	MS.gene99402:CDS	30.0%
ATACAGACCTAGCAATTATT+AGG	+	chr5.1:69054743-69054762	None:intergenic	30.0%
ATAGACAAATATGAACTCAG+AGG	-	chr5.1:69052103-69052122	MS.gene99402:intron	30.0%
ATGATTAGGATAGAGCAAAA+GGG	-	chr5.1:69051209-69051228	MS.gene99402:intron	30.0%
CAACATTACCAATGTTCTTT+AGG	-	chr5.1:69052263-69052282	MS.gene99402:intron	30.0%
CAATCTCAACATCAAAAAAC+TGG	-	chr5.1:69053767-69053786	MS.gene99402:CDS	30.0%
CATAACCAAACAAGAGAAAA+TGG	+	chr5.1:69054807-69054826	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	69050876	69055941	69050876	ID=MS.gene99402
chr5.1	mRNA	69050876	69055941	69050876	ID=MS.gene99402.t1;Parent=MS.gene99402
chr5.1	exon	69053485	69055941	69053485	ID=MS.gene99402.t1.exon1;Parent=MS.gene99402.t1
chr5.1	CDS	69053485	69055941	69053485	ID=cds.MS.gene99402.t1;Parent=MS.gene99402.t1
chr5.1	exon	69053063	69053152	69053063	ID=MS.gene99402.t1.exon2;Parent=MS.gene99402.t1
chr5.1	CDS	69053063	69053152	69053063	ID=cds.MS.gene99402.t1;Parent=MS.gene99402.t1
chr5.1	exon	69052695	69052844	69052695	ID=MS.gene99402.t1.exon3;Parent=MS.gene99402.t1
chr5.1	CDS	69052695	69052844	69052695	ID=cds.MS.gene99402.t1;Parent=MS.gene99402.t1
chr5.1	exon	69051394	69051507	69051394	ID=MS.gene99402.t1.exon4;Parent=MS.gene99402.t1
chr5.1	CDS	69051394	69051507	69051394	ID=cds.MS.gene99402.t1;Parent=MS.gene99402.t1
chr5.1	exon	69050876	69050920	69050876	ID=MS.gene99402.t1.exon5;Parent=MS.gene99402.t1
chr5.1	CDS	69050876	69050920	69050876	ID=cds.MS.gene99402.t1;Parent=MS.gene99402.t1

Gene Sequence

>MS.gene99402

ATGGATGTTCATGTGATAACTATCGGAGAAGGAAGTGGATCGATGGAACATAATGTGGATGCTGAATTTGGTCAAGTTAATGATGCTGGAAACTCGGGATCTCATGCTGAGGGTATGGTTTCGGAGCCATATTTTTCGGAGCCGTATTTGGGCATGGTATTTGATTCTGAAGATTCTGCTAAAAGTTTTTATAGTGAGTATGCTAGACGGTCGGGTTTCAGCTCAAAAGCTGGTTTGCACGGTCAGTTTAATGCTGATGGGACAAATATGTTCCGGGAGTTTGTGTGTAGCAGGGAAGGTTTGAAAAGAAGGATGACTGAAAGTTGCGAGGCGATGATTAGGATAGAGCAAAAGGGTCAAAATAAGTGGGTTGTTACAAAATTTGTGAAGGAACATAGCCATTCTCTGGCGGTACCTGATAAGGTGGAAAAACTTCAACCAGTGAAGCACTTTTCTAGTGTTGGAAGAACCATGCCTGAAACTTACAAAGGACTGGGGCTTGTTCCAACTGGTGTCATGTATATATCTATTGATGCGCATCACGTTTCCTCTGACAATAGTCAAAAGATTAGGAATTCTCCTGCAGCTGCCGCGAAAACGAGTCATCCAGTTAAAAATTCCACTTCGATGCCTTATAATGTGAGGCAACCCATTAAAAAGAAGACATTAGGGAGGGATGCTCGGGACCTGCTGGAATATTTTATGAAAGTGCAGGCTGAAAACCCTGGTTTCTTCTATGCAATACAACTTGATGAAGATAATCGTATGTCTAATGTGTTTTGGGCAGATGCAAGATCAAGGACAGCTTACAGTCATTTTGGTGATGCAGTTACCCTGGACACAACACATAGAGCAAATCAATATAATGTGCCATATGCTCCATTCACTGGGATAAACCATCATGGTCAAATGATTTTGTTTGGTTGTGCACTCATATTTGATGATTCTGAGGCTTCTTTTGGTTGGCTCTTCAAGACATTTCTAGCAGCTATGAATGACCGTCACCCTCTCTCTATAACTACCGATCAGGACAGATGCATACAAACAGCAGTATCACAAGTTTTTCCCCAAGCACGTCACTGCATAAACAAACGTTATGTCTTGCGAGAAGGCCACGAAAAATTGGGCCATGTATGTCGCATGCATCCTTATTTTCACTATGAACTCTATAATTGCATTAACCTGACAGAAACAATTGAGGAGTTTGATTTTTCTTGGAATTCTATCATAGACAAATATGAACTCAGAGGGCATGATTGGCTTCAGTCCTTGTATAGTGCTCGTGATCAATGGGTTCCAGCATATTTCCGTGATTCATTTTTCGCTGTAATATCTCCTACTCAAGGATTTGAAGCCTCTTTTTTGGACGGCGTTGTCAACCGGCATACAACATTACCAATGTTCTTTAGGCAGTATGAACTAGCTCTGGAGAAATGGTTTGAAAAGGAAATAGAATCAGATTTTGAGACAATTAGCACTAATCCAGTTCTAAAGACACCTTCGCCAATGGAGAATCAGGTTGCTAAGCTTTATACACAGAGAATATTTTTGAAGTTTCAAGAAGAGCTAGTTGAAACTTTTGCTTATACCGCCAACAGAATCGAAGAGGATGGGGTGAATAGCATATTTGGAGTTGCAAAGTTTGATGATGTCGAAAAGTCGTACACTGTCACATTAAACCAGTCTGAATTGAGAGCTAACTGTACATGCCAAATGTTTGAGTTTTCAGGCATTCTTTGTAGGCACATTTTAACTGTTTTTACCGTGTCTAATGTATTCACTATACCATCCCACTACATCTTAAAACGGTGGACAATGGAAGCAAAAAACAGTATTGTATTGGACGAATGTGGTGGTGAATCACTTGCATATGAGTCTTTGACATCACGGTATGCCAATCTGTGCCGGGAAGCCATCAGATATGCTGAGGAAGGTGCTGTAGCTATGGAAACTTATGATGCTGCAATGACTGGTCTTAGAGAAGGTGGAAAGAAAGTTGATGTCATGAAGAGAAATATTGCCAAAGTGTCATCAACTAATCATCGACTCAGCTGGAATGATTGCTCCGATCCCGACAAGAGAACCCCTACTTCAACATCAGATACAAGTACAACCCCTCTTTTATGGCCACTTAACGATGAAACATCGACGTTTAATCTTAATGACGTCGATGCTCCTGTTCAACCAATGGCTGATCTGAATTTACCACAAACGACCCCAGTGGCACGTAAGCAAGTTGATGTTCCATCCCCAGTGCCTCGTCAGCGAGTTGAGAGTCCATCCCCAATGCCTCGTCAGCGAGTTGATAGTCCATCCCCAGTGTCTCGTCAGCGAGTTGATGGTCCACGACCAGTGCCTCGTAGGCGAGTTGATGGTCCATCCCCAATGCCTCGTCAGCGAGATGATGGTCCGCCCCCAGCGCCTCTTCAGCAAGATGATGGTCCACCTGAAAACACGGTATGGCAAGAACATCTCTGTTTTTGTTGCTTTTTTATATATGTTCTTGGGATTGGAATAGAATGCATAATGTTGGAAATTCCGCCTTTATTGCGGTCTGCCCCTAGTCGCCTAAATTGCAACCTTTGGTTTGCCTTCATTGCAGCTTCCAACACCTTCATTTTGTTGGCTTTGAGGGGGTGGATTTAGTCCCACATCGGACAGATAGCACTCTTGAGAAGAGTTTATAAAGAGGAGGCACTTCTCACCTTACAAGCCGGTTTTGTAAGGATGAGTTAGGCCCCAAATTTGAATACATAACATTAAGCCAGTCCGTTTATTCTGTCATGTAGGTGGCTCTTCCATCTTTGAAGTCAATGACGTGGGTAATGGAGAACAAAACCTCAAATCCAGAGAACAGAGTAGCCGTTGTCAATCTCAAGGTATGTGCACAACAATCTCAACATCAAAAAACTGGTAGTGGTATTCTTGATATAATTTAAAATCAGTTTTGGATACCTGTGTTTCACTTGAGAAACTCCTGCCATTCGGTTGACCATGGTCCTTTTTTAGTGTTAGTGTACTTAGCTTTTATCCTGTCGCATCATTTTAACAAAGTAACAGTGAGGATTGTCAGTCATTAAACATATTTCAATTGCAGTTGCAAGATTACAACAAGAGTCCATCAACAGAATATGAGGTTAAGTTCCATCTCTCTCGGGTTACTGTGGGACCTGTTTTGAAGTCTATGACTGAAGTCGGGGAACAACTTTCAACAACAGCAAATAAGGTTGCTGTAATAAATCTCAAGGTATGTTATTTTGTTCTTTAGACTCATTATTCTCTAATATGCCCGGTTCATATGCTTTGTTGCTCTGTTATTCTAGTACTGGAATGAAAAGTAGAGATCAATGCAATTGTCTTCGTACTAAGGGGATGTAAAGCAAAAAGGGTGGTACATATAAGCTGATTTATATTTAAAAGAAAGAATCTGGCTGTCGAGGTAGATAATTTTAACTTTAAAATAGAATGACAACAAAGAACAGAACATAACTAGTCTATGGTCTTTGAGGCTGGTGGCATAGGAATATTGCTAAGATGAATATATTTATACCGGCTATTAATAATGTGTTGAAGATGCTGTCGAGAATGTGGACTTGTAATATCAGGGAAAGGCATTAAACTTGGTTTTTGACTTCAATATCTTGCAATTGGTTTTCACCAACCTGAACTTATAATATAAGCAACACACAAAGGATAGAATATTGAGCTTCATTCCTTTGCATCTCAAGACTGAAAGAATTAACATTTTAATTTGGAAGCCATATTTTGTTGCAAATAGAATATTTGTGGAGTGATAATTGTGTTAAATATCGATGTCTAAGATGCTTTGGTTGCGGGTGAAATCTTTGTGCATATTATGTAAGACCTAATAATTGCTAGGTCTGTATAAAAGTATGCATTTTTTTTCTATCTAACTGATCCATGTCTCCCATTTTCTCTTGTTTGGTTATGGAGAGAATATAGCGTAGAAGGAACTAAGTTGATGTGGGGGCCACATTCAATTTTATCTCAAGTTGAGGAAACACAATTTCAAGTAGACAACTTGCTCTTTTTTAATTTTACAGATCTATTTATCTATCATTTAATGTGGGGGTCTATTTGGTTATTTTATCAAGGTAAAAAAGTCATTACATTGATTATTCATCTTTTCCCCACTTTTCCATCCGACCAAATAAGCAAAGGAGAAAATTATACACCTCTTTCTCTCTGTCTATCCATATAAACAACAGACAAAACTTCTCATTTTCTTCCAGCCTCCAAATAGAAGTAGTAAAGAATAAAAGGAAATGTAAAGAAAATAATGGTATTGTTATTATTATTATGGGAGAAATAATGGTTCTTGTTTTAGTTATTGTGCAGCAATGACACTTTCTTAAAAGGCTTTCTTTACTTTGAATAACTTTAAGTTTGTTGAAATTGTTTCAATTGTCTCAGCTTGATAATGCCCGGGTTTCTGGCGAGTCTGAAGTTAAGTTTCAAGTATCCAGGGATGCATTGGGTGCTGTGCTACGATCAATGGCTTATATCCGCGAGCAACTTTCTTGTGCTGTAAGTTTCCTATTACCTAAATATGTGTATCATCCATCATCGCATACAAATCAATTTATCTTTAAAAGTAATCCAATTATGTTACAAGAAAGCCAACTAGTTTTCCATCTCTGGAGGCGTAATAATCATGTTAAAATCTACAATTTTTTTTTAATGACAAATGTTAGTATGTTAATTGTTAGTTTTTTTTTTTTCCTTGCCATGGTTTGAACCCTGGACCTCAACTCCTTAACCCTTAGCTCAGATTAGTTGAGCTACCCAACCCACCCATGTTAAAATCTAGGCTAGAGTTCTATGTTAAAATTTACATTATAATTTGATAATGATATGTCAACTCGTATCTTATATTGTTACTGCAATTCAACTTTTTTTTTTCCTACAATTCAACTTAGTTTAATCTAATTTTTTTTTTATTTAGATAAACCTCTTTCTCTGTGTATATTAATATTTGTTTGCATGCAAAATTTTCGCAGGGCGACGCGAACTCAGAACCTGTGTCAAAAAAGCGTCGAAACTGA

Protein sequence

>MS.gene99402.t1

MDVHVITIGEGSGSMEHNVDAEFGQVNDAGNSGSHAEGMVSEPYFSEPYLGMVFDSEDSAKSFYSEYARRSGFSSKAGLHGQFNADGTNMFREFVCSREGLKRRMTESCEAMIRIEQKGQNKWVVTKFVKEHSHSLAVPDKVEKLQPVKHFSSVGRTMPETYKGLGLVPTGVMYISIDAHHVSSDNSQKIRNSPAAAAKTSHPVKNSTSMPYNVRQPIKKKTLGRDARDLLEYFMKVQAENPGFFYAIQLDEDNRMSNVFWADARSRTAYSHFGDAVTLDTTHRANQYNVPYAPFTGINHHGQMILFGCALIFDDSEASFGWLFKTFLAAMNDRHPLSITTDQDRCIQTAVSQVFPQARHCINKRYVLREGHEKLGHVCRMHPYFHYELYNCINLTETIEEFDFSWNSIIDKYELRGHDWLQSLYSARDQWVPAYFRDSFFAVISPTQGFEASFLDGVVNRHTTLPMFFRQYELALEKWFEKEIESDFETISTNPVLKTPSPMENQVAKLYTQRIFLKFQEELVETFAYTANRIEEDGVNSIFGVAKFDDVEKSYTVTLNQSELRANCTCQMFEFSGILCRHILTVFTVSNVFTIPSHYILKRWTMEAKNSIVLDECGGESLAYESLTSRYANLCREAIRYAEEGAVAMETYDAAMTGLREGGKKVDVMKRNIAKVSSTNHRLSWNDCSDPDKRTPTSTSDTSTTPLLWPLNDETSTFNLNDVDAPVQPMADLNLPQTTPVARKQVDVPSPVPRQRVESPSPMPRQRVDSPSPVSRQRVDGPRPVPRRRVDGPSPMPRQRDDGPPPAPLQQDDGPPENTVALPSLKSMTWVMENKTSNPENRVAVVNLKLQDYNKSPSTEYEVKFHLSRVTVGPVLKSMTEVGEQLSTTANKVAVINLKLDNARVSGESEVKFQVSRDALGAVLRSMAYIREQLSCAGDANSEPVSKKRRN