Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99486.t1 | XP_003623338.1 | 89.8 | 589 | 56 | 2 | 1 | 589 | 1 | 585 | 1.10E-287 | 998.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99486.t1 | Q5NE24 | 25.7 | 311 | 204 | 10 | 286 | 587 | 207 | 499 | 1.4e-14 | 82.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99486.t1 | G7KSD5 | 89.8 | 589 | 56 | 2 | 1 | 589 | 1 | 585 | 7.6e-288 | 998.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene99486.t1 | TF | GRAS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99486.t1 | MTR_7g069740 | 92.699 | 589 | 39 | 2 | 1 | 589 | 1 | 585 | 0.0 | 1101 |
| MS.gene99486.t1 | MTR_5g058860 | 26.866 | 402 | 243 | 17 | 218 | 587 | 114 | 496 | 9.14e-17 | 84.0 |
| MS.gene99486.t1 | MTR_3g072710 | 25.185 | 405 | 248 | 15 | 218 | 587 | 115 | 499 | 1.07e-16 | 83.6 |
| MS.gene99486.t1 | MTR_7g027190 | 25.346 | 434 | 241 | 21 | 202 | 588 | 276 | 673 | 2.73e-15 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 102 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCATGAATATTACCAATT+TGG | 0.125992 | 7.1:+32412179 | None:intergenic |
| CTCCATGATTTGTCACTTCT+TGG | 0.185589 | 7.1:+32411762 | None:intergenic |
| ACCAATTTGGGGACTCAAAA+TGG | 0.187480 | 7.1:+32412192 | None:intergenic |
| CACATAATTGATTATTGTTT+TGG | 0.189427 | 7.1:-32411596 | MS.gene99486:CDS |
| TGAAATTGACATCAATTAAA+TGG | 0.209268 | 7.1:-32411517 | MS.gene99486:CDS |
| TTTCTTCATCAATTGGAAAT+TGG | 0.210829 | 7.1:+32412257 | None:intergenic |
| TTCATGAATATTACCAATTT+GGG | 0.226150 | 7.1:+32412180 | None:intergenic |
| TACTTTGCCACAAGAAAATA+TGG | 0.244532 | 7.1:-32411945 | MS.gene99486:CDS |
| CCCTTGATAAAATACCTTAA+AGG | 0.250375 | 7.1:+32411700 | None:intergenic |
| AACTCCCTTCACTTTCTTCT+TGG | 0.266056 | 7.1:+32412146 | None:intergenic |
| CATTAGAGATGGAAGTTCTA+AGG | 0.276688 | 7.1:+32412234 | None:intergenic |
| AGGAAGGGAATTATTACTTT+TGG | 0.316732 | 7.1:-32411218 | MS.gene99486:CDS |
| CTTGTATATCTTCTCTTGAT+TGG | 0.318337 | 7.1:-32411034 | MS.gene99486:CDS |
| ACTTCCATCTCTAATGGAAT+TGG | 0.322043 | 7.1:-32412227 | MS.gene99486:CDS |
| GATATGATCATTGGTGAATA+TGG | 0.332452 | 7.1:+32412279 | None:intergenic |
| TCTATGTGCTCATAGATTAA+TGG | 0.334847 | 7.1:+32412526 | None:intergenic |
| TCTAAGGTTTCTTCATCAAT+TGG | 0.336948 | 7.1:+32412250 | None:intergenic |
| GATGACCGGTCTTCCTCATA+TGG | 0.343694 | 7.1:-32411315 | MS.gene99486:CDS |
| AAACTCATAAAGTTCCCTTT+TGG | 0.343836 | 7.1:+32411454 | None:intergenic |
| CTTAGAACTTCCATCTCTAA+TGG | 0.346666 | 7.1:-32412233 | MS.gene99486:CDS |
| ATGAAAATTCTGAATGTGTT+TGG | 0.359147 | 7.1:-32411490 | MS.gene99486:CDS |
| CCTCGGAGACAGTTGTAAAA+TGG | 0.374805 | 7.1:-32412074 | MS.gene99486:CDS |
| TCTTGTATGCCTCGCCTTTG+AGG | 0.376080 | 7.1:+32411735 | None:intergenic |
| AGTGAGTCTTCCACACTTGA+TGG | 0.390562 | 7.1:-32411909 | MS.gene99486:CDS |
| TCCATGATTTGTCACTTCTT+GGG | 0.391161 | 7.1:+32411763 | None:intergenic |
| GAAGGTAGAGGAAAAGGAAT+TGG | 0.405087 | 7.1:-32411408 | MS.gene99486:CDS |
| GAAATTGAAGGTAGAGGAAA+AGG | 0.406350 | 7.1:-32411414 | MS.gene99486:CDS |
| CTCTTGATTGGTTACAAACA+TGG | 0.411194 | 7.1:-32411022 | MS.gene99486:CDS |
| AAAGGTGAGATTAGCTTAGA+AGG | 0.414505 | 7.1:-32410969 | MS.gene99486:CDS |
| TCTGATTTCATTGAAAGTGT+TGG | 0.420317 | 7.1:+32411992 | None:intergenic |
| TCAACCATGGTGAAGCTATA+CGG | 0.433516 | 7.1:+32412460 | None:intergenic |
| GGTGCATTACAAGGCTTTGT+TGG | 0.436581 | 7.1:-32411129 | MS.gene99486:CDS |
| TCATATCAAGCTAGAATTGA+AGG | 0.444403 | 7.1:-32410885 | MS.gene99486:CDS |
| GAGGATTTGATCAAGAACTA+TGG | 0.447617 | 7.1:-32411242 | MS.gene99486:CDS |
| TGGAAATTGGATATGATCAT+TGG | 0.449728 | 7.1:+32412270 | None:intergenic |
| GAAACAGCCTTCAACAGAAA+AGG | 0.455865 | 7.1:+32411557 | None:intergenic |
| AGTGATGGCTATCATCATAA+AGG | 0.457503 | 7.1:-32410987 | MS.gene99486:CDS |
| GATCAAAATAATGAACGAAA+AGG | 0.458900 | 7.1:-32411369 | MS.gene99486:CDS |
| TTGGCTTTCAATTTGATGAC+CGG | 0.461685 | 7.1:-32411329 | MS.gene99486:CDS |
| GTCTCAAGAGAGTCACCAAT+TGG | 0.467270 | 7.1:+32411803 | None:intergenic |
| TCATCCATGATGAGACCATA+TGG | 0.470839 | 7.1:+32412418 | None:intergenic |
| CTATACCCTTCGAGGTTATG+TGG | 0.478048 | 7.1:+32412106 | None:intergenic |
| TGCATGTGAAATATTGTTTG+TGG | 0.478742 | 7.1:-32411060 | MS.gene99486:CDS |
| GCCCAAGAAGTGACAAATCA+TGG | 0.480823 | 7.1:-32411764 | MS.gene99486:CDS |
| GTTGATAACTATGATCCATA+TGG | 0.484071 | 7.1:-32412433 | MS.gene99486:CDS |
| AGGGAATTTGGTGCATTACA+AGG | 0.487309 | 7.1:-32411138 | MS.gene99486:CDS |
| CTTCTAACCATTCCCATATG+AGG | 0.492028 | 7.1:+32411302 | None:intergenic |
| ATGACCGGTCTTCCTCATAT+GGG | 0.495090 | 7.1:-32411314 | MS.gene99486:CDS |
| TGTTGGACTCCATGCATCAC+AGG | 0.496115 | 7.1:+32412009 | None:intergenic |
| ATCAAAATAATGAACGAAAA+GGG | 0.498103 | 7.1:-32411368 | MS.gene99486:CDS |
| GGAATTTCGAGGATACCAAA+AGG | 0.507394 | 7.1:-32411469 | MS.gene99486:CDS |
| TCATCCATGATGATGCCATA+TGG | 0.508726 | 7.1:+32412373 | None:intergenic |
| AAATGAGAATCAACTTGTGT+TGG | 0.511243 | 7.1:-32410859 | MS.gene99486:CDS |
| ATCATGTGGTTTGAAATTGA+AGG | 0.512511 | 7.1:-32411426 | MS.gene99486:CDS |
| TGCTCATAGATTAATGGCCA+TGG | 0.515236 | 7.1:+32412532 | None:intergenic |
| CATGGTGAAGCCTTGGAGAA+AGG | 0.516575 | 7.1:-32411881 | MS.gene99486:CDS |
| GAAATGATCGTAAGTGGCAC+TGG | 0.516790 | 7.1:+32412048 | None:intergenic |
| GATTTGAACTATACCCTTCG+AGG | 0.518294 | 7.1:+32412098 | None:intergenic |
| GGAAGCACATGGTGAAGCCT+TGG | 0.523810 | 7.1:-32411888 | MS.gene99486:CDS |
| TGGTTTGAAATTGAAGGTAG+AGG | 0.525487 | 7.1:-32411420 | MS.gene99486:CDS |
| GAATTTCGAGGATACCAAAA+GGG | 0.531446 | 7.1:-32411468 | MS.gene99486:CDS |
| GGTGAGATTAGCTTAGAAGG+TGG | 0.534203 | 7.1:-32410966 | MS.gene99486:CDS |
| AGAATCAACTTGTGTTGGAA+TGG | 0.540696 | 7.1:-32410854 | MS.gene99486:CDS |
| GATCAAGAACTATGGTAGGA+AGG | 0.541695 | 7.1:-32411234 | MS.gene99486:CDS |
| GGTGATGACTATGTTCCATA+TGG | 0.543086 | 7.1:-32412388 | MS.gene99486:CDS |
| CGGTCTTCCTCATATGGGAA+TGG | 0.548383 | 7.1:-32411309 | MS.gene99486:CDS |
| ATCAAGAACTATGGTAGGAA+GGG | 0.548515 | 7.1:-32411233 | MS.gene99486:CDS |
| TAAAGGGAAATGATCGTAAG+TGG | 0.549388 | 7.1:+32412042 | None:intergenic |
| AAAATTCTCCCTGTGATGCA+TGG | 0.552151 | 7.1:-32412018 | MS.gene99486:CDS |
| TATGAGTTTGCTAAATCATG+TGG | 0.552563 | 7.1:-32411440 | MS.gene99486:CDS |
| GAATCCAATTCCATTAGAGA+TGG | 0.557271 | 7.1:+32412223 | None:intergenic |
| CAACTTGTGTTGGAATGGAA+AGG | 0.560463 | 7.1:-32410849 | MS.gene99486:CDS |
| TGTTCCATATGGCATCATCA+TGG | 0.566239 | 7.1:-32412377 | MS.gene99486:CDS |
| AAGAGATTCTTCACTCTCCA+TGG | 0.566385 | 7.1:-32412549 | MS.gene99486:CDS |
| TCTTGATTGGTTACAAACAT+GGG | 0.569487 | 7.1:-32411021 | MS.gene99486:CDS |
| TGATGATGATCAAAGGTTGA+TGG | 0.571392 | 7.1:+32412502 | None:intergenic |
| TGAATGTGTTTGGAATTTCG+AGG | 0.573073 | 7.1:-32411480 | MS.gene99486:CDS |
| TGATCCATATGGTCTCATCA+TGG | 0.574218 | 7.1:-32412422 | MS.gene99486:CDS |
| CATTCCCATATGAGGAAGAC+CGG | 0.576719 | 7.1:+32411310 | None:intergenic |
| GATGATGATCAAAGGTTGAT+GGG | 0.579359 | 7.1:+32412503 | None:intergenic |
| TCAAGTGTGGAAGACTCACT+TGG | 0.579458 | 7.1:+32411912 | None:intergenic |
| CAATCAAGAGAAGATATACA+AGG | 0.583066 | 7.1:+32411035 | None:intergenic |
| GAAGTCAGAGAAATGTTGAG+AGG | 0.583320 | 7.1:-32410918 | MS.gene99486:CDS |
| TATTACCAAGAAGAAAGTGA+AGG | 0.596617 | 7.1:-32412151 | MS.gene99486:CDS |
| ATTTGATCAAGAACTATGGT+AGG | 0.606165 | 7.1:-32411238 | MS.gene99486:CDS |
| TGGGAAGAGATGAAAAGTGA+TGG | 0.608114 | 7.1:-32411002 | MS.gene99486:CDS |
| AATCATGGAGATTACCTCAA+AGG | 0.616214 | 7.1:-32411749 | MS.gene99486:CDS |
| CCATGTGCTTCCATCAAGTG+TGG | 0.618160 | 7.1:+32411899 | None:intergenic |
| ATTACCAAGAAGAAAGTGAA+GGG | 0.618537 | 7.1:-32412150 | MS.gene99486:CDS |
| TCATGAATATTACCAATTTG+GGG | 0.620776 | 7.1:+32412181 | None:intergenic |
| ATGTTGATGATGATGATCAA+AGG | 0.629471 | 7.1:+32412495 | None:intergenic |
| GTTGGACTCCATGCATCACA+GGG | 0.638138 | 7.1:+32412010 | None:intergenic |
| GGGTATAGTTCAAATCCCCT+CGG | 0.648026 | 7.1:-32412091 | MS.gene99486:CDS |
| GTTATCAACATGGTCAACCA+TGG | 0.651417 | 7.1:+32412447 | None:intergenic |
| CTCATCATGGATGATCATGT+TGG | 0.654247 | 7.1:-32412409 | MS.gene99486:CDS |
| CCACACTTGATGGAAGCACA+TGG | 0.654957 | 7.1:-32411899 | MS.gene99486:CDS |
| ATTCATAATCATATTCAACA+TGG | 0.661377 | 7.1:+32412350 | None:intergenic |
| AAGAGAGTCACCAATTGGAG+TGG | 0.663623 | 7.1:+32411808 | None:intergenic |
| AAAATAATGAACGAAAAGGG+CGG | 0.679821 | 7.1:-32411365 | MS.gene99486:CDS |
| TGGAGATTACCTCAAAGGCG+AGG | 0.686092 | 7.1:-32411744 | MS.gene99486:CDS |
| ATGGATCATAGTTATCAACA+TGG | 0.707690 | 7.1:+32412437 | None:intergenic |
| TGAGCCGTATAGCTTCACCA+TGG | 0.723365 | 7.1:-32412464 | MS.gene99486:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAAATAATGAACGAAAA+GGG | - | chr7.1:32412003-32412022 | MS.gene99486:CDS | 20.0% |
| !! | ATTCATAATCATATTCAACA+TGG | + | chr7.1:32411024-32411043 | None:intergenic | 20.0% |
| !! | TGAAATTGACATCAATTAAA+TGG | - | chr7.1:32411854-32411873 | MS.gene99486:CDS | 20.0% |
| !! | TTCATGAATATTACCAATTT+GGG | + | chr7.1:32411194-32411213 | None:intergenic | 20.0% |
| !!! | AATTTCATGTCATTTTTTGA+AGG | - | chr7.1:32412213-32412232 | MS.gene99486:CDS | 20.0% |
| !!! | ATTGATTATTGTTTTGGAAA+TGG | - | chr7.1:32411781-32411800 | MS.gene99486:CDS | 20.0% |
| !!! | ATTTCATGTCATTTTTTGAA+GGG | - | chr7.1:32412214-32412233 | MS.gene99486:CDS | 20.0% |
| !!! | CACATAATTGATTATTGTTT+TGG | - | chr7.1:32411775-32411794 | MS.gene99486:CDS | 20.0% |
| ! | ATGAAAATTCTGAATGTGTT+TGG | - | chr7.1:32411881-32411900 | MS.gene99486:CDS | 25.0% |
| ! | GATCAAAATAATGAACGAAA+AGG | - | chr7.1:32412002-32412021 | MS.gene99486:CDS | 25.0% |
| ! | GTTCATGAATATTACCAATT+TGG | + | chr7.1:32411195-32411214 | None:intergenic | 25.0% |
| ! | TCATGAATATTACCAATTTG+GGG | + | chr7.1:32411193-32411212 | None:intergenic | 25.0% |
| ! | TTTCTTCATCAATTGGAAAT+TGG | + | chr7.1:32411117-32411136 | None:intergenic | 25.0% |
| !! | AACTGTTGAGATTTTCTATT+TGG | - | chr7.1:32412550-32412569 | MS.gene99486:CDS | 25.0% |
| !! | ACATGTTAATGAGTTTTTGA+AGG | - | chr7.1:32412101-32412120 | MS.gene99486:CDS | 25.0% |
| !! | TATGTGGAAAATTTTGTGAA+GGG | + | chr7.1:32411252-32411271 | None:intergenic | 25.0% |
| !! | TCAATTTCCATATTTTCTTG+TGG | + | chr7.1:32411436-32411455 | None:intergenic | 25.0% |
| !! | TTATGTGGAAAATTTTGTGA+AGG | + | chr7.1:32411253-32411272 | None:intergenic | 25.0% |
| !!! | ATTGAGCAAAAATGTTTTGA+TGG | - | chr7.1:32412431-32412450 | MS.gene99486:CDS | 25.0% |
| !!! | CCTTTAAGGTATTTTATCAA+GGG | - | chr7.1:32411671-32411690 | MS.gene99486:CDS | 25.0% |
| AAAATAATGAACGAAAAGGG+CGG | - | chr7.1:32412006-32412025 | MS.gene99486:CDS | 30.0% | |
| AAATGAGAATCAACTTGTGT+TGG | - | chr7.1:32412512-32412531 | MS.gene99486:CDS | 30.0% | |
| ATGGATCATAGTTATCAACA+TGG | + | chr7.1:32410937-32410956 | None:intergenic | 30.0% | |
| ATTACCAAGAAGAAAGTGAA+GGG | - | chr7.1:32411221-32411240 | MS.gene99486:CDS | 30.0% | |
| ATTTGATCAAGAACTATGGT+AGG | - | chr7.1:32412133-32412152 | MS.gene99486:CDS | 30.0% | |
| CAATCAAGAGAAGATATACA+AGG | + | chr7.1:32412339-32412358 | None:intergenic | 30.0% | |
| CCCTTGATAAAATACCTTAA+AGG | + | chr7.1:32411674-32411693 | None:intergenic | 30.0% | |
| CTTGTATATCTTCTCTTGAT+TGG | - | chr7.1:32412337-32412356 | MS.gene99486:CDS | 30.0% | |
| GATATGATCATTGGTGAATA+TGG | + | chr7.1:32411095-32411114 | None:intergenic | 30.0% | |
| TACTTTGCCACAAGAAAATA+TGG | - | chr7.1:32411426-32411445 | MS.gene99486:CDS | 30.0% | |
| TATTACCAAGAAGAAAGTGA+AGG | - | chr7.1:32411220-32411239 | MS.gene99486:CDS | 30.0% | |
| TCATATCAAGCTAGAATTGA+AGG | - | chr7.1:32412486-32412505 | MS.gene99486:CDS | 30.0% | |
| TCTATGTGCTCATAGATTAA+TGG | + | chr7.1:32410848-32410867 | None:intergenic | 30.0% | |
| TGCATGTGAAATATTGTTTG+TGG | - | chr7.1:32412311-32412330 | MS.gene99486:CDS | 30.0% | |
| TGGAAATTGGATATGATCAT+TGG | + | chr7.1:32411104-32411123 | None:intergenic | 30.0% | |
| ! | AAACTCATAAAGTTCCCTTT+TGG | + | chr7.1:32411920-32411939 | None:intergenic | 30.0% |
| ! | AGGAAGGGAATTATTACTTT+TGG | - | chr7.1:32412153-32412172 | MS.gene99486:CDS | 30.0% |
| ! | ATCATGTGGTTTGAAATTGA+AGG | - | chr7.1:32411945-32411964 | MS.gene99486:CDS | 30.0% |
| ! | GGTATTTTATCAAGGGAATT+TGG | - | chr7.1:32411678-32411697 | MS.gene99486:CDS | 30.0% |
| ! | TCTAAGGTTTCTTCATCAAT+TGG | + | chr7.1:32411124-32411143 | None:intergenic | 30.0% |
| ! | TCTGATTTCATTGAAAGTGT+TGG | + | chr7.1:32411382-32411401 | None:intergenic | 30.0% |
| ! | TCTTGATTGGTTACAAACAT+GGG | - | chr7.1:32412350-32412369 | MS.gene99486:CDS | 30.0% |
| ! | TGAGACACTTGCATTTTATT+TGG | - | chr7.1:32411585-32411604 | MS.gene99486:CDS | 30.0% |
| ! | TTTTATCAAGGGAATTTGGT+TGG | - | chr7.1:32411682-32411701 | MS.gene99486:CDS | 30.0% |
| !! | ATGTTGATGATGATGATCAA+AGG | + | chr7.1:32410879-32410898 | None:intergenic | 30.0% |
| !! | GGAATTATTACTTTTGGTGA+TGG | - | chr7.1:32412159-32412178 | MS.gene99486:CDS | 30.0% |
| !! | GTTGATAACTATGATCCATA+TGG | - | chr7.1:32410938-32410957 | MS.gene99486:CDS | 30.0% |
| !! | TATGAGTTTGCTAAATCATG+TGG | - | chr7.1:32411931-32411950 | MS.gene99486:CDS | 30.0% |
| !!! | GCCTTTAAGGTATTTTATCA+AGG | - | chr7.1:32411670-32411689 | MS.gene99486:CDS | 30.0% |
| !!! | GTCATTTTTTGAAGGGAATT+TGG | - | chr7.1:32412221-32412240 | MS.gene99486:CDS | 30.0% |
| AATCATGGAGATTACCTCAA+AGG | - | chr7.1:32411622-32411641 | MS.gene99486:CDS | 35.0% | |
| ACTTCCATCTCTAATGGAAT+TGG | - | chr7.1:32411144-32411163 | MS.gene99486:CDS | 35.0% | |
| AGAATCAACTTGTGTTGGAA+TGG | - | chr7.1:32412517-32412536 | MS.gene99486:CDS | 35.0% | |
| AGTGATGGCTATCATCATAA+AGG | - | chr7.1:32412384-32412403 | MS.gene99486:CDS | 35.0% | |
| ATCAAGAACTATGGTAGGAA+GGG | - | chr7.1:32412138-32412157 | MS.gene99486:CDS | 35.0% | |
| CAAAAAGTTACCACTCCAAT+TGG | - | chr7.1:32411553-32411572 | MS.gene99486:CDS | 35.0% | |
| CATTAGAGATGGAAGTTCTA+AGG | + | chr7.1:32411140-32411159 | None:intergenic | 35.0% | |
| CTTAGAACTTCCATCTCTAA+TGG | - | chr7.1:32411138-32411157 | MS.gene99486:CDS | 35.0% | |
| GAAATTGAAGGTAGAGGAAA+AGG | - | chr7.1:32411957-32411976 | MS.gene99486:CDS | 35.0% | |
| GAATCCAATTCCATTAGAGA+TGG | + | chr7.1:32411151-32411170 | None:intergenic | 35.0% | |
| GAATTTCGAGGATACCAAAA+GGG | - | chr7.1:32411903-32411922 | MS.gene99486:CDS | 35.0% | |
| GAGGATTTGATCAAGAACTA+TGG | - | chr7.1:32412129-32412148 | MS.gene99486:CDS | 35.0% | |
| TAAAGGGAAATGATCGTAAG+TGG | + | chr7.1:32411332-32411351 | None:intergenic | 35.0% | |
| ! | AATTTTCCACATAACCTCGA+AGG | - | chr7.1:32411259-32411278 | MS.gene99486:CDS | 35.0% |
| ! | ATTTTCCACATAACCTCGAA+GGG | - | chr7.1:32411260-32411279 | MS.gene99486:CDS | 35.0% |
| ! | CAATTGGAGTGGTAACTTTT+TGG | + | chr7.1:32411555-32411574 | None:intergenic | 35.0% |
| ! | CACAGGGAGAATTTTGTAAA+GGG | + | chr7.1:32411348-32411367 | None:intergenic | 35.0% |
| ! | CTCTTGATTGGTTACAAACA+TGG | - | chr7.1:32412349-32412368 | MS.gene99486:CDS | 35.0% |
| ! | GATGATGATCAAAGGTTGAT+GGG | + | chr7.1:32410871-32410890 | None:intergenic | 35.0% |
| ! | TCACAGGGAGAATTTTGTAA+AGG | + | chr7.1:32411349-32411368 | None:intergenic | 35.0% |
| ! | TCCATGATTTGTCACTTCTT+GGG | + | chr7.1:32411611-32411630 | None:intergenic | 35.0% |
| ! | TGAATGTGTTTGGAATTTCG+AGG | - | chr7.1:32411891-32411910 | MS.gene99486:CDS | 35.0% |
| ! | TGATGATGATCAAAGGTTGA+TGG | + | chr7.1:32410872-32410891 | None:intergenic | 35.0% |
| ! | TGGTTTGAAATTGAAGGTAG+AGG | - | chr7.1:32411951-32411970 | MS.gene99486:CDS | 35.0% |
| ! | TTGGCTTTCAATTTGATGAC+CGG | - | chr7.1:32412042-32412061 | MS.gene99486:CDS | 35.0% |
| !! | AAAGGTGAGATTAGCTTAGA+AGG | - | chr7.1:32412402-32412421 | MS.gene99486:CDS | 35.0% |
| !!! | GTTTTGGAAATGGTGTTCAA+TGG | - | chr7.1:32411791-32411810 | MS.gene99486:CDS | 35.0% |
| AAAATTCTCCCTGTGATGCA+TGG | - | chr7.1:32411353-32411372 | MS.gene99486:CDS | 40.0% | |
| AACTCCCTTCACTTTCTTCT+TGG | + | chr7.1:32411228-32411247 | None:intergenic | 40.0% | |
| AAGAGATTCTTCACTCTCCA+TGG | - | chr7.1:32410822-32410841 | MS.gene99486:CDS | 40.0% | |
| ACCAATTTGGGGACTCAAAA+TGG | + | chr7.1:32411182-32411201 | None:intergenic | 40.0% | |
| CAACTTGTGTTGGAATGGAA+AGG | - | chr7.1:32412522-32412541 | MS.gene99486:CDS | 40.0% | |
| CTCATCATGGATGATCATGT+TGG | - | chr7.1:32410962-32410981 | MS.gene99486:CDS | 40.0% | |
| CTTCTAACCATTCCCATATG+AGG | + | chr7.1:32412072-32412091 | None:intergenic | 40.0% | |
| GAAACAGCCTTCAACAGAAA+AGG | + | chr7.1:32411817-32411836 | None:intergenic | 40.0% | |
| GAAGGTAGAGGAAAAGGAAT+TGG | - | chr7.1:32411963-32411982 | MS.gene99486:CDS | 40.0% | |
| GAAGTCAGAGAAATGTTGAG+AGG | - | chr7.1:32412453-32412472 | MS.gene99486:CDS | 40.0% | |
| GATCAAGAACTATGGTAGGA+AGG | - | chr7.1:32412137-32412156 | MS.gene99486:CDS | 40.0% | |
| GATTTGAACTATACCCTTCG+AGG | + | chr7.1:32411276-32411295 | None:intergenic | 40.0% | |
| GGAATTTCGAGGATACCAAA+AGG | - | chr7.1:32411902-32411921 | MS.gene99486:CDS | 40.0% | |
| GGTGATGACTATGTTCCATA+TGG | - | chr7.1:32410983-32411002 | MS.gene99486:CDS | 40.0% | |
| GTTATCAACATGGTCAACCA+TGG | + | chr7.1:32410927-32410946 | None:intergenic | 40.0% | |
| TCAACCATGGTGAAGCTATA+CGG | + | chr7.1:32410914-32410933 | None:intergenic | 40.0% | |
| TCATCCATGATGAGACCATA+TGG | + | chr7.1:32410956-32410975 | None:intergenic | 40.0% | |
| TGATCCATATGGTCTCATCA+TGG | - | chr7.1:32410949-32410968 | MS.gene99486:CDS | 40.0% | |
| TGCTCATAGATTAATGGCCA+TGG | + | chr7.1:32410842-32410861 | None:intergenic | 40.0% | |
| TGGGAAGAGATGAAAAGTGA+TGG | - | chr7.1:32412369-32412388 | MS.gene99486:CDS | 40.0% | |
| TGTTCCATATGGCATCATCA+TGG | - | chr7.1:32410994-32411013 | MS.gene99486:CDS | 40.0% | |
| ! | ATTTTACAACTGTCTCCGAG+GGG | + | chr7.1:32411298-32411317 | None:intergenic | 40.0% |
| ! | CATTTTACAACTGTCTCCGA+GGG | + | chr7.1:32411299-32411318 | None:intergenic | 40.0% |
| ! | CGAGGCATACAAGAATTTTC+AGG | - | chr7.1:32411645-32411664 | MS.gene99486:CDS | 40.0% |
| ! | CTCCATGATTTGTCACTTCT+TGG | + | chr7.1:32411612-32411631 | None:intergenic | 40.0% |
| ! | TCAATGGCCTTTTCTGTTGA+AGG | - | chr7.1:32411807-32411826 | MS.gene99486:CDS | 40.0% |
| ! | TCATCCATGATGATGCCATA+TGG | + | chr7.1:32411001-32411020 | None:intergenic | 40.0% |
| !! | AGGGAATTTGGTGCATTACA+AGG | - | chr7.1:32412233-32412252 | MS.gene99486:CDS | 40.0% |
| !! | GAATTTTCAGGCTGCCTTTA+AGG | - | chr7.1:32411657-32411676 | MS.gene99486:CDS | 40.0% |
| !! | TCCATTTTGAGTCCCCAAAT+TGG | - | chr7.1:32411178-32411197 | MS.gene99486:CDS | 40.0% |
| !! | TGAGTTTTTGAAGGTAGCTG+AGG | - | chr7.1:32412110-32412129 | MS.gene99486:CDS | 40.0% |
| !! | TGCTTTTTGTCCTTTCTCCA+AGG | + | chr7.1:32411503-32411522 | None:intergenic | 40.0% |
| AAGAGAGTCACCAATTGGAG+TGG | + | chr7.1:32411566-32411585 | None:intergenic | 45.0% | |
| AGTGAGTCTTCCACACTTGA+TGG | - | chr7.1:32411462-32411481 | MS.gene99486:CDS | 45.0% | |
| ATGACCGGTCTTCCTCATAT+GGG | - | chr7.1:32412057-32412076 | MS.gene99486:CDS | 45.0% | |
| CATTCCCATATGAGGAAGAC+CGG | + | chr7.1:32412064-32412083 | None:intergenic | 45.0% | |
| CCTCGGAGACAGTTGTAAAA+TGG | - | chr7.1:32411297-32411316 | MS.gene99486:CDS | 45.0% | |
| CTATACCCTTCGAGGTTATG+TGG | + | chr7.1:32411268-32411287 | None:intergenic | 45.0% | |
| GAAATGATCGTAAGTGGCAC+TGG | + | chr7.1:32411326-32411345 | None:intergenic | 45.0% | |
| GCCCAAGAAGTGACAAATCA+TGG | - | chr7.1:32411607-32411626 | MS.gene99486:CDS | 45.0% | |
| GGGTATAGTTCAAATCCCCT+CGG | - | chr7.1:32411280-32411299 | MS.gene99486:CDS | 45.0% | |
| GTCTCAAGAGAGTCACCAAT+TGG | + | chr7.1:32411571-32411590 | None:intergenic | 45.0% | |
| TCAAGTGTGGAAGACTCACT+TGG | + | chr7.1:32411462-32411481 | None:intergenic | 45.0% | |
| ! | CCATTTTACAACTGTCTCCG+AGG | + | chr7.1:32411300-32411319 | None:intergenic | 45.0% |
| ! | GGTGCATTACAAGGCTTTGT+TGG | - | chr7.1:32412242-32412261 | MS.gene99486:CDS | 45.0% |
| !! | GGTGAGATTAGCTTAGAAGG+TGG | - | chr7.1:32412405-32412424 | MS.gene99486:CDS | 45.0% |
| !!! | GGGCGGAAAGAAAGTGTTTT+TGG | - | chr7.1:32412023-32412042 | MS.gene99486:CDS | 45.0% |
| CATGGTGAAGCCTTGGAGAA+AGG | - | chr7.1:32411490-32411509 | MS.gene99486:CDS | 50.0% | |
| CCATGTGCTTCCATCAAGTG+TGG | + | chr7.1:32411475-32411494 | None:intergenic | 50.0% | |
| CGGTCTTCCTCATATGGGAA+TGG | - | chr7.1:32412062-32412081 | MS.gene99486:CDS | 50.0% | |
| GATGACCGGTCTTCCTCATA+TGG | - | chr7.1:32412056-32412075 | MS.gene99486:CDS | 50.0% | |
| GTTGGACTCCATGCATCACA+GGG | + | chr7.1:32411364-32411383 | None:intergenic | 50.0% | |
| TCTTGTATGCCTCGCCTTTG+AGG | + | chr7.1:32411639-32411658 | None:intergenic | 50.0% | |
| TGAGCCGTATAGCTTCACCA+TGG | - | chr7.1:32410907-32410926 | MS.gene99486:CDS | 50.0% | |
| TGGAGATTACCTCAAAGGCG+AGG | - | chr7.1:32411627-32411646 | MS.gene99486:CDS | 50.0% | |
| TGTTGGACTCCATGCATCAC+AGG | + | chr7.1:32411365-32411384 | None:intergenic | 50.0% | |
| ! | CCACACTTGATGGAAGCACA+TGG | - | chr7.1:32411472-32411491 | MS.gene99486:CDS | 50.0% |
| ! | GGAAGCACATGGTGAAGCCT+TGG | - | chr7.1:32411483-32411502 | MS.gene99486:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 32410812 | 32412581 | 32410812 | ID=MS.gene99486 |
| chr7.1 | mRNA | 32410812 | 32412581 | 32410812 | ID=MS.gene99486.t1;Parent=MS.gene99486 |
| chr7.1 | exon | 32410812 | 32412581 | 32410812 | ID=MS.gene99486.t1.exon1;Parent=MS.gene99486.t1 |
| chr7.1 | CDS | 32410812 | 32412581 | 32410812 | ID=cds.MS.gene99486.t1;Parent=MS.gene99486.t1 |
| Gene Sequence |
| Protein sequence |
