Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99489.t1 | XP_003623338.1 | 78.6 | 458 | 25 | 3 | 26 | 414 | 78 | 531 | 3.50E-189 | 671 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99489.t1 | G7KSD5 | 78.6 | 458 | 25 | 3 | 26 | 414 | 78 | 531 | 2.5e-189 | 671.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene99489.t1 | TF | GRAS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99489.t1 | MTR_7g069740 | 91.369 | 336 | 28 | 1 | 79 | 414 | 197 | 531 | 0.0 | 621 |
| MS.gene99489.t1 | MTR_3g072710 | 24.128 | 344 | 204 | 14 | 80 | 391 | 103 | 421 | 1.38e-11 | 66.6 |
| MS.gene99489.t1 | MTR_5g058860 | 24.633 | 341 | 213 | 14 | 77 | 390 | 94 | 417 | 7.88e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 64 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTGACATAATTGATTAT+TGG | 0.190898 | 7.1:-32372253 | MS.gene99489:CDS |
| ACCAATTTGTGGACTCAAAA+TGG | 0.208342 | 7.1:+32372841 | None:intergenic |
| TGAAATTGACATCAATTAAA+TGG | 0.209268 | 7.1:-32372169 | MS.gene99489:CDS |
| TTTCTTCATCAATTGGAAAT+TGG | 0.210829 | 7.1:+32372906 | None:intergenic |
| TACTTTGCCACAAGAAAATA+TGG | 0.244532 | 7.1:-32372597 | MS.gene99489:intron |
| AACTCCCTTCACTTTCTTCT+TGG | 0.260798 | 7.1:+32372798 | None:intergenic |
| ATTGCAACAAAGCTTTATAA+TGG | 0.275966 | 7.1:+32371778 | None:intergenic |
| ATCAAGGGAATTATTACTTT+TGG | 0.281766 | 7.1:-32371870 | MS.gene99489:CDS |
| GACATAATTGATTATTGGTT+TGG | 0.287363 | 7.1:-32372248 | MS.gene99489:CDS |
| CTTGTATATCTTCTCTTGAT+TGG | 0.318337 | 7.1:-32371686 | MS.gene99489:CDS |
| GATATGATCATTGGTGAATA+TGG | 0.332452 | 7.1:+32372928 | None:intergenic |
| TCCAAGGTTTCTTCATCAAT+TGG | 0.335882 | 7.1:+32372899 | None:intergenic |
| ATACTCATAAAGTTCCCTTT+TGG | 0.352223 | 7.1:+32372106 | None:intergenic |
| CTTGGAACTTCCATCTCTAA+TGG | 0.352756 | 7.1:-32372882 | MS.gene99489:CDS |
| ATGAAAATTCTGAATGTGTT+TGG | 0.359147 | 7.1:-32372142 | MS.gene99489:CDS |
| GAACATAGTCATCATCAATA+TGG | 0.362230 | 7.1:+32373044 | None:intergenic |
| TCTTGTATGCCTCGCCTTTG+AGG | 0.374060 | 7.1:+32372387 | None:intergenic |
| AATGATAGGTCTTCCACATA+TGG | 0.384690 | 7.1:-32371967 | MS.gene99489:CDS |
| AGTGAGTCTTCCACACTTGA+TGG | 0.390562 | 7.1:-32372561 | MS.gene99489:CDS |
| GAAATTGAAGGTAGAGGAAA+AGG | 0.406350 | 7.1:-32372066 | MS.gene99489:CDS |
| TCTTGAATATTACCAATTTG+TGG | 0.407532 | 7.1:+32372830 | None:intergenic |
| CTCTTGATTGGTTACAAACA+TGG | 0.411194 | 7.1:-32371674 | MS.gene99489:CDS |
| TTGGCTTTCAAGTTAATGAT+AGG | 0.426926 | 7.1:-32371981 | MS.gene99489:CDS |
| GAAGGTAGAGGAAAAGGAAT+TGG | 0.435590 | 7.1:-32372060 | MS.gene99489:CDS |
| ATTGATTATTGGTTTGGAAA+TGG | 0.443553 | 7.1:-32372242 | MS.gene99489:CDS |
| TCCAATTGATGAAGAAACCT+TGG | 0.445970 | 7.1:-32372900 | MS.gene99489:CDS |
| TGGAAATTGGATATGATCAT+TGG | 0.449728 | 7.1:+32372919 | None:intergenic |
| GATCAAGAACTATGGTATCA+AGG | 0.453234 | 7.1:-32371886 | MS.gene99489:CDS |
| AGTGATGGCTATCATCATAA+AGG | 0.457503 | 7.1:-32371639 | MS.gene99489:CDS |
| GAGGATTTGATCAAGAACTA+TGG | 0.460555 | 7.1:-32371894 | MS.gene99489:CDS |
| ATCAAAATAATGAACGAAAC+GGG | 0.464863 | 7.1:-32372020 | MS.gene99489:CDS |
| GTCTCAAGAGAGTCACCAAT+TGG | 0.467270 | 7.1:+32372455 | None:intergenic |
| GAAACAGCCTCCAAGAGAAA+AGG | 0.477495 | 7.1:+32372209 | None:intergenic |
| TGCATGTGAAGTGTTGTTTG+TGG | 0.478913 | 7.1:-32371712 | MS.gene99489:CDS |
| GCTCAAGAAGTGACAAATCA+TGG | 0.497130 | 7.1:-32372416 | MS.gene99489:CDS |
| GATCAAAATAATGAACGAAA+CGG | 0.497362 | 7.1:-32372021 | MS.gene99489:CDS |
| CTTCTAACCATTCCCATATG+TGG | 0.507260 | 7.1:+32371954 | None:intergenic |
| TCATCCATGATGATGCCATA+TGG | 0.509020 | 7.1:+32373022 | None:intergenic |
| CATTAGAGATGGAAGTTCCA+AGG | 0.509956 | 7.1:+32372883 | None:intergenic |
| ATCATGTGGTTTGAAATTGA+AGG | 0.512511 | 7.1:-32372078 | MS.gene99489:CDS |
| GATGATGACTATGTTCCATA+TGG | 0.514828 | 7.1:-32373037 | MS.gene99489:CDS |
| CATGGTGAAGCCTTGGAGAA+AGG | 0.516575 | 7.1:-32372533 | MS.gene99489:CDS |
| GGAAGCACATGGTGAAGCCT+TGG | 0.523810 | 7.1:-32372540 | MS.gene99489:CDS |
| TGGTTTGAAATTGAAGGTAG+AGG | 0.525487 | 7.1:-32372072 | MS.gene99489:CDS |
| GGTTTGGAAATGGTGTTCAA+TGG | 0.527955 | 7.1:-32372232 | MS.gene99489:CDS |
| ATGATAGGTCTTCCACATAT+GGG | 0.529724 | 7.1:-32371966 | MS.gene99489:CDS |
| ATCAAGAACTATGGTATCAA+GGG | 0.539287 | 7.1:-32371885 | MS.gene99489:CDS |
| GATTCTAATTCCATTAGAGA+TGG | 0.545913 | 7.1:+32372872 | None:intergenic |
| TATGAGTATGCTAAATCATG+TGG | 0.552563 | 7.1:-32372092 | MS.gene99489:CDS |
| TGTTCCATATGGCATCATCA+TGG | 0.566239 | 7.1:-32373026 | MS.gene99489:CDS |
| TCTTGATTGGTTACAAACAT+GGG | 0.569487 | 7.1:-32371673 | MS.gene99489:CDS |
| ATAGTTCTTGATCAAATCCT+CGG | 0.572634 | 7.1:+32371896 | None:intergenic |
| TCAAGTGTGGAAGACTCACT+TGG | 0.579458 | 7.1:+32372564 | None:intergenic |
| CCATATGGCATCATCATGGA+TGG | 0.582147 | 7.1:-32373067 | None:intergenic |
| CAATCAAGAGAAGATATACA+AGG | 0.583066 | 7.1:+32371687 | None:intergenic |
| AGGTCTTCCACATATGGGAA+TGG | 0.588806 | 7.1:-32371961 | MS.gene99489:CDS |
| TGGGAAGAGATGAAAAGTGA+TGG | 0.608114 | 7.1:-32371654 | MS.gene99489:CDS |
| TTCATCACAATCTTCTAACA+TGG | 0.616759 | 7.1:+32372274 | None:intergenic |
| CCATGTGCTTCCATCAAGTG+TGG | 0.618160 | 7.1:+32372551 | None:intergenic |
| AAAATAATGAACGAAACGGG+TGG | 0.646793 | 7.1:-32372017 | MS.gene99489:CDS |
| CCACACTTGATGGAAGCACA+TGG | 0.654957 | 7.1:-32372551 | MS.gene99489:CDS |
| AATCATGGAGAATACCTCAA+AGG | 0.661739 | 7.1:-32372401 | MS.gene99489:CDS |
| AAGAGAGTCACCAATTGGAG+TGG | 0.663623 | 7.1:+32372460 | None:intergenic |
| TGGAGAATACCTCAAAGGCG+AGG | 0.686092 | 7.1:-32372396 | MS.gene99489:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGACATAATTGATTAT+TGG | - | chr7.1:32372425-32372444 | MS.gene99489:CDS | 15.0% |
| !! | TGAAATTGACATCAATTAAA+TGG | - | chr7.1:32372509-32372528 | MS.gene99489:CDS | 20.0% |
| !!! | AATTTCATGTCATTTTTTGA+AGG | - | chr7.1:32372868-32372887 | MS.gene99489:CDS | 20.0% |
| !!! | ATTTCATGTCATTTTTTGAA+GGG | - | chr7.1:32372869-32372888 | MS.gene99489:CDS | 20.0% |
| !!! | CTTTTAAGGTATTTTATCAA+GGG | - | chr7.1:32372326-32372345 | MS.gene99489:CDS | 20.0% |
| ! | ATCAAAATAATGAACGAAAC+GGG | - | chr7.1:32372658-32372677 | MS.gene99489:intron | 25.0% |
| ! | ATGAAAATTCTGAATGTGTT+TGG | - | chr7.1:32372536-32372555 | MS.gene99489:CDS | 25.0% |
| ! | GATCAAAATAATGAACGAAA+CGG | - | chr7.1:32372657-32372676 | MS.gene99489:intron | 25.0% |
| ! | TCTTGAATATTACCAATTTG+TGG | + | chr7.1:32371851-32371870 | None:intergenic | 25.0% |
| ! | TTTCTTCATCAATTGGAAAT+TGG | + | chr7.1:32371775-32371794 | None:intergenic | 25.0% |
| !! | AAATGCTTATGAGTTTTTGA+AGG | - | chr7.1:32372756-32372775 | MS.gene99489:intron | 25.0% |
| !! | ATCAAGGGAATTATTACTTT+TGG | - | chr7.1:32372808-32372827 | MS.gene99489:intron | 25.0% |
| !! | ATTGCAACAAAGCTTTATAA+TGG | + | chr7.1:32372903-32372922 | None:intergenic | 25.0% |
| !! | GACATAATTGATTATTGGTT+TGG | - | chr7.1:32372430-32372449 | MS.gene99489:CDS | 25.0% |
| !! | TCAATTTCCATATTTTCTTG+TGG | + | chr7.1:32372091-32372110 | None:intergenic | 25.0% |
| !!! | ATTGATTATTGGTTTGGAAA+TGG | - | chr7.1:32372436-32372455 | MS.gene99489:CDS | 25.0% |
| !!! | GCTTTTAAGGTATTTTATCA+AGG | - | chr7.1:32372325-32372344 | MS.gene99489:CDS | 25.0% |
| AATACCAAGAAGAAAGTGAA+GGG | - | chr7.1:32371876-32371895 | MS.gene99489:CDS | 30.0% | |
| ATAGTTCTTGATCAAATCCT+CGG | + | chr7.1:32372785-32372804 | None:intergenic | 30.0% | |
| ATCAAGAACTATGGTATCAA+GGG | - | chr7.1:32372793-32372812 | MS.gene99489:intron | 30.0% | |
| CAATCAAGAGAAGATATACA+AGG | + | chr7.1:32372994-32373013 | None:intergenic | 30.0% | |
| CTTGTATATCTTCTCTTGAT+TGG | - | chr7.1:32372992-32373011 | MS.gene99489:CDS | 30.0% | |
| GAACATAGTCATCATCAATA+TGG | + | chr7.1:32371637-32371656 | None:intergenic | 30.0% | |
| GATATGATCATTGGTGAATA+TGG | + | chr7.1:32371753-32371772 | None:intergenic | 30.0% | |
| GATTCTAATTCCATTAGAGA+TGG | + | chr7.1:32371809-32371828 | None:intergenic | 30.0% | |
| TAAAGGGAAATCATCATAAG+TGG | + | chr7.1:32371987-32372006 | None:intergenic | 30.0% | |
| TACTTTGCCACAAGAAAATA+TGG | - | chr7.1:32372081-32372100 | MS.gene99489:CDS | 30.0% | |
| TATGAGTATGCTAAATCATG+TGG | - | chr7.1:32372586-32372605 | MS.gene99489:CDS | 30.0% | |
| TGGAAATTGGATATGATCAT+TGG | + | chr7.1:32371762-32371781 | None:intergenic | 30.0% | |
| TTCATCACAATCTTCTAACA+TGG | + | chr7.1:32372407-32372426 | None:intergenic | 30.0% | |
| ! | ACATGTGGAAAATTTTGTGA+AGG | + | chr7.1:32371908-32371927 | None:intergenic | 30.0% |
| ! | ATACTCATAAAGTTCCCTTT+TGG | + | chr7.1:32372575-32372594 | None:intergenic | 30.0% |
| ! | ATCATGTGGTTTGAAATTGA+AGG | - | chr7.1:32372600-32372619 | MS.gene99489:intron | 30.0% |
| ! | CATGTGGAAAATTTTGTGAA+GGG | + | chr7.1:32371907-32371926 | None:intergenic | 30.0% |
| ! | GGTATTTTATCAAGGGAATT+TGG | - | chr7.1:32372333-32372352 | MS.gene99489:CDS | 30.0% |
| ! | TCTGATTTCATTGAAAGTGT+TGG | + | chr7.1:32372037-32372056 | None:intergenic | 30.0% |
| ! | TCTTGATTGGTTACAAACAT+GGG | - | chr7.1:32373005-32373024 | MS.gene99489:CDS | 30.0% |
| ! | TGAGACACTTGCATTTTATT+TGG | - | chr7.1:32372240-32372259 | MS.gene99489:CDS | 30.0% |
| ! | TTTTATCAAGGGAATTTGGT+TGG | - | chr7.1:32372337-32372356 | MS.gene99489:CDS | 30.0% |
| !! | GGAATTATTACTTTTGGTGA+TGG | - | chr7.1:32372814-32372833 | MS.gene99489:CDS | 30.0% |
| !! | TGAATGTGTTTGGAATTTTG+AGG | - | chr7.1:32372546-32372565 | MS.gene99489:CDS | 30.0% |
| !! | TGGAAAAATGGCTCATTTTT+CGG | - | chr7.1:32372357-32372376 | MS.gene99489:CDS | 30.0% |
| !! | TTGGCTTTCAAGTTAATGAT+AGG | - | chr7.1:32372697-32372716 | MS.gene99489:intron | 30.0% |
| !!! | GTCATTTTTTGAAGGGAATT+TGG | - | chr7.1:32372876-32372895 | MS.gene99489:CDS | 30.0% |
| AAAATAATGAACGAAACGGG+TGG | - | chr7.1:32372661-32372680 | MS.gene99489:intron | 35.0% | |
| AATCATGGAGAATACCTCAA+AGG | - | chr7.1:32372277-32372296 | MS.gene99489:CDS | 35.0% | |
| AATGATAGGTCTTCCACATA+TGG | - | chr7.1:32372711-32372730 | MS.gene99489:intron | 35.0% | |
| ACCAATTTGTGGACTCAAAA+TGG | + | chr7.1:32371840-32371859 | None:intergenic | 35.0% | |
| AGGGAATTTGGTTGGAAAAA+TGG | - | chr7.1:32372345-32372364 | MS.gene99489:CDS | 35.0% | |
| AGTGATGGCTATCATCATAA+AGG | - | chr7.1:32373039-32373058 | MS.gene99489:CDS | 35.0% | |
| ATGATAGGTCTTCCACATAT+GGG | - | chr7.1:32372712-32372731 | MS.gene99489:intron | 35.0% | |
| CAAAAAGTTACCACTCCAAT+TGG | - | chr7.1:32372208-32372227 | MS.gene99489:CDS | 35.0% | |
| GAAATTGAAGGTAGAGGAAA+AGG | - | chr7.1:32372612-32372631 | MS.gene99489:intron | 35.0% | |
| GAATACCAAGAAGAAAGTGA+AGG | - | chr7.1:32371875-32371894 | MS.gene99489:CDS | 35.0% | |
| GAGGATTTGATCAAGAACTA+TGG | - | chr7.1:32372784-32372803 | MS.gene99489:intron | 35.0% | |
| GATCAAGAACTATGGTATCA+AGG | - | chr7.1:32372792-32372811 | MS.gene99489:intron | 35.0% | |
| GATGATGACTATGTTCCATA+TGG | - | chr7.1:32371641-32371660 | MS.gene99489:CDS | 35.0% | |
| TCCAAGGTTTCTTCATCAAT+TGG | + | chr7.1:32371782-32371801 | None:intergenic | 35.0% | |
| TCCAATTGATGAAGAAACCT+TGG | - | chr7.1:32371778-32371797 | MS.gene99489:CDS | 35.0% | |
| ! | CAATTGGAGTGGTAACTTTT+TGG | + | chr7.1:32372210-32372229 | None:intergenic | 35.0% |
| ! | CACAGGGAGAATTTTGTAAA+GGG | + | chr7.1:32372003-32372022 | None:intergenic | 35.0% |
| ! | CTCTTGATTGGTTACAAACA+TGG | - | chr7.1:32373004-32373023 | MS.gene99489:CDS | 35.0% |
| ! | TCACAGGGAGAATTTTGTAA+AGG | + | chr7.1:32372004-32372023 | None:intergenic | 35.0% |
| ! | TGGTTTGAAATTGAAGGTAG+AGG | - | chr7.1:32372606-32372625 | MS.gene99489:intron | 35.0% |
| !! | GAATTTTGAGGATGCCAAAA+GGG | - | chr7.1:32372558-32372577 | MS.gene99489:CDS | 35.0% |
| !! | TCCATTTTGAGTCCACAAAT+TGG | - | chr7.1:32371836-32371855 | MS.gene99489:CDS | 35.0% |
| !!! | GAATTTTCAGGCTGCTTTTA+AGG | - | chr7.1:32372312-32372331 | MS.gene99489:CDS | 35.0% |
| AAAATTCTCCCTGTGATGCA+TGG | - | chr7.1:32372008-32372027 | MS.gene99489:CDS | 40.0% | |
| AACTCCCTTCACTTTCTTCT+TGG | + | chr7.1:32371883-32371902 | None:intergenic | 40.0% | |
| CATTAGAGATGGAAGTTCCA+AGG | + | chr7.1:32371798-32371817 | None:intergenic | 40.0% | |
| CTTCTAACCATTCCCATATG+TGG | + | chr7.1:32372727-32372746 | None:intergenic | 40.0% | |
| CTTGGAACTTCCATCTCTAA+TGG | - | chr7.1:32371796-32371815 | MS.gene99489:CDS | 40.0% | |
| GAAATCATCATAAGTGGCAC+TGG | + | chr7.1:32371981-32372000 | None:intergenic | 40.0% | |
| GAAGGTAGAGGAAAAGGAAT+TGG | - | chr7.1:32372618-32372637 | MS.gene99489:intron | 40.0% | |
| GATTTGAACTATACCCTTCG+AGG | + | chr7.1:32371931-32371950 | None:intergenic | 40.0% | |
| GCTCAAGAAGTGACAAATCA+TGG | - | chr7.1:32372262-32372281 | MS.gene99489:CDS | 40.0% | |
| GGTTTGGAAATGGTGTTCAA+TGG | - | chr7.1:32372446-32372465 | MS.gene99489:CDS | 40.0% | |
| TGGGAAGAGATGAAAAGTGA+TGG | - | chr7.1:32373024-32373043 | MS.gene99489:CDS | 40.0% | |
| TGTTCCATATGGCATCATCA+TGG | - | chr7.1:32371652-32371671 | MS.gene99489:CDS | 40.0% | |
| ! | AATTTTCCACATGTCCTCGA+AGG | - | chr7.1:32371914-32371933 | MS.gene99489:CDS | 40.0% |
| ! | ATTTTACAACTGTCTCCGAG+GGG | + | chr7.1:32371953-32371972 | None:intergenic | 40.0% |
| ! | ATTTTCCACATGTCCTCGAA+GGG | - | chr7.1:32371915-32371934 | MS.gene99489:CDS | 40.0% |
| ! | CATTTTACAACTGTCTCCGA+GGG | + | chr7.1:32371954-32371973 | None:intergenic | 40.0% |
| ! | CGAGGCATACAAGAATTTTC+AGG | - | chr7.1:32372300-32372319 | MS.gene99489:CDS | 40.0% |
| ! | GGGTGGAAAGAAAGAGTTTT+TGG | - | chr7.1:32372678-32372697 | MS.gene99489:intron | 40.0% |
| ! | TCATCCATGATGATGCCATA+TGG | + | chr7.1:32371659-32371678 | None:intergenic | 40.0% |
| ! | TGTTCAATGGCCTTTTCTCT+TGG | - | chr7.1:32372459-32372478 | MS.gene99489:CDS | 40.0% |
| !! | GGAATTTTGAGGATGCCAAA+AGG | - | chr7.1:32372557-32372576 | MS.gene99489:CDS | 40.0% |
| !! | TGCATGTGAAGTGTTGTTTG+TGG | - | chr7.1:32372966-32372985 | MS.gene99489:CDS | 40.0% |
| !! | TGCTTTTTGTCCTTTCTCCA+AGG | + | chr7.1:32372158-32372177 | None:intergenic | 40.0% |
| AAGAGAGTCACCAATTGGAG+TGG | + | chr7.1:32372221-32372240 | None:intergenic | 45.0% | |
| AGGTCTTCCACATATGGGAA+TGG | - | chr7.1:32372717-32372736 | MS.gene99489:intron | 45.0% | |
| AGTGAGTCTTCCACACTTGA+TGG | - | chr7.1:32372117-32372136 | MS.gene99489:CDS | 45.0% | |
| CCTCGGAGACAGTTGTAAAA+TGG | - | chr7.1:32371952-32371971 | MS.gene99489:CDS | 45.0% | |
| GAAACAGCCTCCAAGAGAAA+AGG | + | chr7.1:32372472-32372491 | None:intergenic | 45.0% | |
| GGGTATAGTTCAAATCCCCT+CGG | - | chr7.1:32371935-32371954 | MS.gene99489:CDS | 45.0% | |
| GTCTCAAGAGAGTCACCAAT+TGG | + | chr7.1:32372226-32372245 | None:intergenic | 45.0% | |
| TCAAGTGTGGAAGACTCACT+TGG | + | chr7.1:32372117-32372136 | None:intergenic | 45.0% | |
| ! | ATCATCATAAGTGGCACTGG+CGG | + | chr7.1:32371978-32371997 | None:intergenic | 45.0% |
| ! | CCATTTTACAACTGTCTCCG+AGG | + | chr7.1:32371955-32371974 | None:intergenic | 45.0% |
| ! | TCAATGGCCTTTTCTCTTGG+AGG | - | chr7.1:32372462-32372481 | MS.gene99489:CDS | 45.0% |
| !! | TGAGTTTTTGAAGGTAGCCG+AGG | - | chr7.1:32372765-32372784 | MS.gene99489:intron | 45.0% |
| CATGGTGAAGCCTTGGAGAA+AGG | - | chr7.1:32372145-32372164 | MS.gene99489:CDS | 50.0% | |
| CCATGTGCTTCCATCAAGTG+TGG | + | chr7.1:32372130-32372149 | None:intergenic | 50.0% | |
| CTATACCCTTCGAGGACATG+TGG | + | chr7.1:32371923-32371942 | None:intergenic | 50.0% | |
| GTTGGACTCCATGCATCACA+GGG | + | chr7.1:32372019-32372038 | None:intergenic | 50.0% | |
| TCTTGTATGCCTCGCCTTTG+AGG | + | chr7.1:32372294-32372313 | None:intergenic | 50.0% | |
| TGGAGAATACCTCAAAGGCG+AGG | - | chr7.1:32372282-32372301 | MS.gene99489:CDS | 50.0% | |
| TGTTGGACTCCATGCATCAC+AGG | + | chr7.1:32372020-32372039 | None:intergenic | 50.0% | |
| ! | CCACACTTGATGGAAGCACA+TGG | - | chr7.1:32372127-32372146 | MS.gene99489:CDS | 50.0% |
| ! | GGAAGCACATGGTGAAGCCT+TGG | - | chr7.1:32372138-32372157 | MS.gene99489:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 32371626 | 32373074 | 32371626 | ID=MS.gene99489 |
| chr7.1 | mRNA | 32371626 | 32373074 | 32371626 | ID=MS.gene99489.t1;Parent=MS.gene99489 |
| chr7.1 | exon | 32372810 | 32373074 | 32372810 | ID=MS.gene99489.t1.exon1;Parent=MS.gene99489.t1 |
| chr7.1 | CDS | 32372810 | 32373074 | 32372810 | ID=cds.MS.gene99489.t1;Parent=MS.gene99489.t1 |
| chr7.1 | exon | 32371626 | 32372605 | 32371626 | ID=MS.gene99489.t1.exon2;Parent=MS.gene99489.t1 |
| chr7.1 | CDS | 32371626 | 32372605 | 32371626 | ID=cds.MS.gene99489.t1;Parent=MS.gene99489.t1 |
| Gene Sequence |
| Protein sequence |
